BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_477949.1| putative 1,4-beta-D xylan xylanohydrolase ... 322 7e-87
gb|AAX33301.1| putative endo-1,4-beta-xylanase [Populus tre... 163 5e-39
ref|NP_172476.1| hydrolase, hydrolyzing O-glycosyl compound... 155 1e-36
gb|AAZ79232.1| putative xylanase Xyn1 [Nicotiana tabacum] 154 2e-36
gb|AAG50641.1| xylan endohydrolase isoenzyme, putative [Ara... 152 1e-35
gb|AAZ79233.1| putative xylanase Xyn2 [Nicotiana tabacum] 151 2e-35
ref|NP_176133.1| RXF12; hydrolase, hydrolyzing O-glycosyl c... 149 6e-35
ref|XP_469240.1| putative xylan xylanohydrolase isoenzyme [... 101 2e-20
dbj|BAB39757.1| putative xylanase containing two cellulose ... 89 1e-16
ref|NP_001031593.1| hydrolase, hydrolyzing O-glycosyl compo... 89 1e-16
gb|AAO64897.1| At4g08160 [Arabidopsis thaliana] >gi|2644979... 89 1e-16
ref|NP_192556.2| hydrolase, hydrolyzing O-glycosyl compound... 89 1e-16
ref|ZP_00503824.1| Glycoside hydrolase, family 10:Clostridi... 73 7e-12
emb|CAE51307.1| beta-1,4-xylanase [Clostridium thermocellum] 72 2e-11
gb|AAD27896.1| putative xylan endohydrolase [Arabidopsis th... 69 1e-10
gb|AAB95325.1| family 10 xylanase [Caldicellulosiruptor sp.... 62 2e-08
gb|AAT48119.1| xylanase [Ruminococcus albus] 55 1e-06
emb|CAA90745.1| endoxylanase [Cellulomonas fimi] 53 7e-06
emb|CAH60863.1| endo-1,4-beta-xylanase [Hordeum vulgare sub... 52 2e-05
emb|CAH60862.1| endo-1,4-beta-xylanase [Hordeum vulgare] 52 2e-05
dbj|BAB39493.1| xylanase B [Ruminococcus albus] 52 2e-05
emb|CAB65753.1| xylanase 10B precursor [Polyplastron multiv... 49 1e-04
gb|EAM76095.1| Endo-1,4-beta-xylanase [Kineococcus radiotol... 47 4e-04
sp|P36917|XYNA_THESA Endo-1,4-beta-xylanase A precursor (Xy... 47 4e-04
pir||A48490 endo-1,4-beta-xylanase (EC 3.2.1.8) A precursor... 47 4e-04
ref|ZP_00504483.1| Glycoside hydrolase, family 10:Clostridi... 47 4e-04
gb|AAB08046.1| XynA precursor [Thermoanaerobacterium thermo... 47 7e-04
gb|AAA85198.1| XynA [Ruminococcus albus] 46 9e-04
emb|CAA07173.1| endo-1,4-beta-xylanase [Bacillus sp. BP-23] 45 0.002
gb|AAK73567.1| 1,4-beta-D xylan xylanohydrolase [Hordeum vu... 44 0.003
gb|AAF61649.1| beta-1,4-xylanase XynA precursor [Caldibacil... 44 0.003
gb|AAK73557.1| truncated 1,4-beta-D xylan xylanohydrolase [... 44 0.006
gb|AAK73564.1| truncated 1,4-beta-D xylan xylanohydrolase [... 44 0.006
gb|AAK73562.1| 1,4-beta-D xylan xylanohydrolase [Hordeum vu... 44 0.006
gb|AAK73563.1| truncated 1,4-beta-D xylan xylanohydrolase [... 44 0.006
gb|AAK73561.1| truncated 1,4-beta-D xylan xylanohydrolase [... 44 0.006
gb|AAK73566.1| endo-xylanase GFP fusion protein [Expression... 44 0.006
gb|AAB95326.1| family 10 xylanase [Caldicellulosiruptor sp.... 43 0.008
gb|AAT37531.1| xylanase B [Clostridium cellulovorans] 43 0.008
emb|CAH60861.1| endo-1,4-beta-xylanase [Hordeum vulgare sub... 42 0.017
dbj|BAB20931.1| xylanase A [Clostridium josui] 42 0.022
gb|AAD54768.1| endo-1,4-beta-xylanase [Cellulomonas pachnodae] 41 0.029
gb|AAG06171.1| hypothetical protein PA2783 [Pseudomonas aer... 41 0.029
gb|AAW62373.1| endo-1,4-beta-xylanase [Cellulomonas flavigena] 40 0.049
gb|AAD30363.1| XynA [Caldicellulosiruptor sp. Tok7B.1] 40 0.049
gb|AAK73559.1| 1,4-beta-D xylan xylanohydrolase [Hordeum vu... 40 0.049
gb|AAB87372.1| xylanase [Caldicellulosiruptor saccharolytic... 40 0.049
ref|ZP_00968829.1| hypothetical protein PaerC_01001778 [Pse... 40 0.064
ref|ZP_00136102.1| hypothetical protein Paer03000379 [Pseud... 40 0.084
gb|AAD32594.1| family 10 xylanase XynC [Thermotoga sp. stra... 40 0.084
gb|AAD32593.2| family 10 xylanase XynB [Thermotoga sp. stra... 40 0.084
emb|CAA87069.1| xylanase [Thermotoga neapolitana] >gi|24943... 40 0.084
emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus tropicalis] 38 0.32
gb|AAC43719.1| endoxylanase precursor >gi|1588792|prf||2209... 38 0.32
gb|AAH61416.1| Pseudouridylate synthase 3 [Xenopus tropical... 37 0.71
ref|NP_920933.1| putative 1,4-beta-xylanase [Oryza sativa (... 37 0.71
ref|NP_195577.2| hydrolase, hydrolyzing O-glycosyl compound... 37 0.71
emb|CAA86406.1| xylanase [Thermotoga maritima] >gi|2494333|... 37 0.71
ref|ZP_00525276.1| Endo-1,4-beta-xylanase [Solibacter usita... 37 0.71
gb|AAB87371.1| xylanase [Caldicellulosiruptor saccharolyticus] 36 1.2
ref|ZP_00884869.1| Cellulose binding, type IV [Caldicellulo... 36 1.2
emb|CAD48314.1| celloxylanase CelX [Clostridium stercorarium] 35 2.1
sp|Q03745|CR1EB_BACTA Pesticidal crystal protein cry1Eb (In... 35 2.7
dbj|BAA82143.1| xylanase C [Clostridium stercorarium] 35 2.7
emb|CAE13637.1| unnamed protein product [Photorhabdus lumin... 33 7.9
dbj|BAC45001.1| xylanase 5 [Paenibacillus sp. W-61] 33 7.9
>ref|XP_477949.1| putative 1,4-beta-D xylan xylanohydrolase [Oryza sativa (japonica
cultivar-group)]
dbj|BAC57375.2| putative 1,4-beta-D xylan xylanohydrolase [Oryza sativa (japonica
cultivar-group)]
Length = 1101
Score = 322 bits (825), Expect = 7e-87
Identities = 159/207 (76%), Positives = 175/207 (84%), Gaps = 4/207 (1%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYKKTASS----VGGTENIILNYDFSKGLHPWNPIRC 184
RRL EGPPPGVDLLIDSVTISYKKT + V GTENII NYDFS+GLH WNPI C
Sbjct: 180 RRLVFYIEGPPPGVDLLIDSVTISYKKTERAASKLVSGTENIISNYDFSEGLHLWNPICC 239
Query: 185 HAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDG 364
HAY ASQWSGFLDGIRG+SGENYAVVSKRTE WQGLEQDIT++VS GT Y VSA+VRVDG
Sbjct: 240 HAYVASQWSGFLDGIRGSSGENYAVVSKRTESWQGLEQDITDKVSAGTAYAVSAYVRVDG 299
Query: 365 IVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPP 544
+ +VEVKATLRL N D STHY+PVGS++ASKEKW K+EGSF LTNMPK VVFYLEGPP
Sbjct: 300 NIHTKVEVKATLRLHNTDDSTHYSPVGSLLASKEKWEKMEGSFCLTNMPKRVVFYLEGPP 359
Query: 545 AGVDLVIDSVTVACSRHKQSKEVKVPA 625
AGVDL+IDSV V CS ++Q KEVKVP+
Sbjct: 360 AGVDLIIDSVNVTCSGYQQLKEVKVPS 386
Score = 180 bits (457), Expect = 3e-44
Identities = 84/161 (52%), Positives = 118/161 (73%)
Frame = +2
Query: 122 ENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQD 301
ENI+ N DFS+GLH W+P CH + A + SG+ GIR +SG NYAV+++RT +WQGLEQD
Sbjct: 50 ENILSNNDFSEGLHLWHPNGCHGFVAVEGSGYHHGIRPHSGSNYAVLTRRTHNWQGLEQD 109
Query: 302 ITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKL 481
IT +V+ GT Y+V+A VRV G + V ++ATL+L+ ST+Y V + ASK+ W KL
Sbjct: 110 ITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKLEGDGSSTNYQSVARISASKDCWEKL 169
Query: 482 EGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQS 604
EGSF L +P+ +VFY+EGPP GVDL+IDSVT++ + +++
Sbjct: 170 EGSFELKTLPRRLVFYIEGPPPGVDLLIDSVTISYKKTERA 210
Score = 101 bits (252), Expect = 2e-20
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 5/197 (2%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYK-----KTASSVGGTENIILNYDFSKGLHPWNPIR 181
+R+ EGPP GVDL+IDSV ++ K G + I+ N F +GL+ W+
Sbjct: 349 KRVVFYLEGPPAGVDLIIDSVNVTCSGYQQLKEVKVPSGVDTIVKNPHFDEGLNNWSGRG 408
Query: 182 CHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVD 361
C+ + ++ +G +A + R +W G++QDIT +V +Y +S+ VR+
Sbjct: 409 CNICRHELTA--YGNVKPLNGSYFASATGRVHNWNGIQQDITGRVQRKVLYEISSAVRIF 466
Query: 362 GIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGP 541
G EV TL +Q G Y + AS ++W L+G F L V ++EGP
Sbjct: 467 GSAN-DTEVCVTLWVQEY-GRERYVSLAKNPASDKQWTHLKGKFLLHAPFSKAVIFVEGP 524
Query: 542 PAGVDLVIDSVTVACSR 592
PAG+D+++D + ++ +R
Sbjct: 525 PAGIDILVDGLVLSPAR 541
Score = 88.2 bits (217), Expect = 2e-16
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISYKKTA--------SSVGGTENIILNYDFSKGLHPWNP-----I 178
EGPP G+D+L+D + +S + +V N+I N FS GL W+P +
Sbjct: 522 EGPPAGIDILVDGLVLSPARKLHAAPRPRIENVSYGANVIHNSAFSHGLSGWSPMGSCRL 581
Query: 179 RCHAYAASQWSGFLDG------IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVV 340
H + S L IRG+ Y + + RT+ W G Q IT+++ T Y V
Sbjct: 582 SIHTESPHMLSAILKDPSAKQHIRGS----YILATNRTDVWMGPSQLITDKLRLHTTYRV 637
Query: 341 SAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNV 520
SA+VR G+ V L + + + G V A ++W +L+G+F L P V
Sbjct: 638 SAWVRAGSGGHGRYHVNVCLAVDH-----QWVNGGQVEADGDQWYELKGAFKLEKKPSKV 692
Query: 521 VFYLEGPPAGVDL 559
Y++GPP GVDL
Sbjct: 693 TAYVQGPPPGVDL 705
>gb|AAX33301.1| putative endo-1,4-beta-xylanase [Populus tremula x Populus
tremuloides]
Length = 915
Score = 163 bits (412), Expect = 5e-39
Identities = 88/172 (51%), Positives = 110/172 (63%)
Frame = +2
Query: 74 SVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENY 253
S T+S SS NIILN+DFS+GL+ W+P C + S SG G G NY
Sbjct: 13 SETVSQNMIDSSNSNAPNIILNHDFSRGLNSWHPNCCDGFVLSADSGH-SGFSTKPGGNY 71
Query: 254 AVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHY 433
AVVS R E WQGLEQDIT+++S + Y +SA V V G VQ +V ATL+L+ + +T Y
Sbjct: 72 AVVSNRKECWQGLEQDITSRISPCSTYSISARVGVSGPVQYPTDVLATLKLEYQNSATSY 131
Query: 434 NPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACS 589
VG + SKE W KLEG+FSL MP +VVFYLEGP GVDL+I+SV + CS
Sbjct: 132 LLVGEISVSKEGWEKLEGTFSLATMPDHVVFYLEGPAPGVDLLIESVIITCS 183
Score = 112 bits (281), Expect = 8e-24
Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISYKKTAS-------SVGGTENIILNYDFSKGLHPWNPIRCHAYA 196
EGP PGVDLLI+SV I+ + + G NIILN F GL+ W+ C
Sbjct: 165 EGPAPGVDLLIESVIITCSCPSECNNARPCAGDGDGNIILNPQFDDGLNNWSGRGCKI-- 222
Query: 197 ASQWSGFLDG-IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQ 373
+ DG I SG+ A ++RT+ W G++Q+IT +V Y +A VR+ G
Sbjct: 223 -AIHDSIADGKIVPLSGKVLATATERTQSWNGIQQEITERVQRKLAYEATAVVRIFGNNV 281
Query: 374 GQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGV 553
+++ATL +Q + Y + ++ A+ + W +L+G F L PK VV Y+EGPPAG
Sbjct: 282 TSADIRATLWVQTPNLREQYIGIANLQATDKDWVQLQGKFLLNGSPKRVVIYIEGPPAGT 341
Query: 554 DLVIDSVTV 580
D++++S V
Sbjct: 342 DILVNSFVV 350
Score = 81.6 bits (200), Expect = 2e-14
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYKK--------TASSVGGTENIILNYDFSKGLHPWN 172
+R+ EGPP G D+L++S + + + + NII N + S G + W
Sbjct: 328 KRVVIYIEGPPAGTDILVNSFVVKHAEKIPPSPPPVIENPAFGVNIIQNSNLSDGTNGWF 387
Query: 173 PI-RCHAYAASQWSGFLDGIRGNS-------GENYAVVSKRTEHWQGLEQDITNQVSTGT 328
P+ C A+ L + +S +V+KRT+ W G Q IT+++
Sbjct: 388 PLGNCTLTVATGSPHILPPMARDSLGPHEPLSGRCILVTKRTQTWMGPAQMITDKLKLLL 447
Query: 329 VYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNM 508
Y VSA+V++ G V L + N + G V + ++W+++ GSF +
Sbjct: 448 TYQVSAWVKIGSGANGPQNVNVALGVDN-----QWVNGGQVEINDDRWHEIGGSFRIEKQ 502
Query: 509 PKNVVFYLEGPPAGVDLVIDSVTV 580
P V+ Y++GP AGVDL++ + +
Sbjct: 503 PSKVMVYVQGPAAGVDLMLAGLQI 526
>ref|NP_172476.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
gb|AAC34334.1| Similar to endoxylanases [Arabidopsis thaliana]
Length = 1063
Score = 155 bits (391), Expect = 1e-36
Identities = 90/207 (43%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTISYKKTASSVGGTE-------------NIILNYDFSKGL 160
R+ EGP PG DLLI SVT+ T+S TE NII N+DFS GL
Sbjct: 136 RVVLYLEGPAPGKDLLIRSVTVR-SSTSSDFQETEKNTDASNVFPLALNIIKNHDFSDGL 194
Query: 161 HPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVV 340
+ WN C ++ S L E+ AVV+ R+E WQGLEQDIT+ VS G Y V
Sbjct: 195 YSWNTNGCDSFVVSSNDCNL--------ESNAVVNNRSETWQGLEQDITDNVSPGFSYKV 246
Query: 341 SAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNV 520
SA V V G V G +V ATL+L++ +T + +G ASK+ W LEG+F ++ P V
Sbjct: 247 SASVSVSGPVLGSAQVLATLKLEHKSSATEFQLIGKTYASKDIWKTLEGTFEVSGRPDRV 306
Query: 521 VFYLEGPPAGVDLVIDSVTVACSRHKQ 601
VF+LEGPP G+DL++ SVT+ C Q
Sbjct: 307 VFFLEGPPPGIDLLVKSVTIHCESDNQ 333
Score = 137 bits (346), Expect = 2e-31
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = +2
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQ--WSGFLDGIRGNSGENYAVVSKRTEHWQGLEQ 298
NI++N DF G+ PW P C A+ S +S + +SG Y VV+ R E WQGLEQ
Sbjct: 5 NIVMNGDFFAGIEPWYPNGCEAFVVSSDPFSSEVMSADSSSG-GYVVVTNRKETWQGLEQ 63
Query: 299 DITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNK 478
DIT +V++G Y VS V V G EV +T+RL++ D T Y +G AS++KW
Sbjct: 64 DITTRVASGMNYTVSTCVGVSGPFNESAEVLSTVRLEHEDSPTEYLCIGKTYASRDKWVD 123
Query: 479 LEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQSKEVK 616
LEG+FS++NMP VV YLEGP G DL+I SVTV S +E +
Sbjct: 124 LEGTFSISNMPDRVVLYLEGPAPGKDLLIRSVTVRSSTSSDFQETE 169
Score = 113 bits (283), Expect = 5e-24
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 10/197 (5%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTISY---------KKTASSVGGTENIILNYDFSKGLHPWN 172
R+ EGPPPG+DLL+ SVTI ++ S+ +I LN FS GL+ W+
Sbjct: 305 RVVFFLEGPPPGIDLLVKSVTIHCESDNQFERSREFCSAPESDNHIFLNSSFSDGLNHWS 364
Query: 173 PIRCHAYAASQWSGFLDG-IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAF 349
C+ + DG I +SG +A S+RT W G+EQDIT +V +Y S+
Sbjct: 365 GRGCNLMLHESLA---DGKILPDSGTCFASASERTHKWSGIEQDITERVQRKLIYEASSV 421
Query: 350 VRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFY 529
VR+ V+ATL +Q D Y + SV + + W +L+G F L P V Y
Sbjct: 422 VRLS---HSHHTVQATLYVQYLDQREEYIGISSVQGTHDDWVELKGKFLLNGSPARAVVY 478
Query: 530 LEGPPAGVDLVIDSVTV 580
+EGPP G+D+ +D V
Sbjct: 479 IEGPPPGIDVFVDHFAV 495
Score = 68.6 bits (166), Expect = 2e-10
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTI--SYKKTASSVGGTE------NIILNYDFSKG-LHPWNPIR-CH 187
EGPPPG+D+ +D + + K+T S E NI+ N S G + W P+ CH
Sbjct: 480 EGPPPGIDVFVDHFAVKPAEKETPSGRPYIESHAFGMNIVSNSHLSDGTIEGWFPLGDCH 539
Query: 188 AYAASQWSGFL-----DGIRGNSGE---NYAVVSKRTEHWQGLEQDITNQVSTGTVYVVS 343
L D +R G Y + + R+ W G Q IT++V Y VS
Sbjct: 540 LKVGDGSPRILPPLARDSLRKTQGYLSGRYVLATNRSGTWMGPAQTITDKVKLFVTYQVS 599
Query: 344 AFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVV 523
A+V++ G+ + + DG+ + G V W+++ GSF + K V+
Sbjct: 600 AWVKIGS--GGRTSPQDVNIALSVDGN--WVNGGKVEVDDGDWHEVVGSFRIEKEAKEVM 655
Query: 524 FYLEGPPAGVDLVIDSVTV 580
+++GP GVDL++ + +
Sbjct: 656 LHVQGPSPGVDLMVAGLQI 674
>gb|AAZ79232.1| putative xylanase Xyn1 [Nicotiana tabacum]
Length = 918
Score = 154 bits (390), Expect = 2e-36
Identities = 82/169 (48%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Frame = +2
Query: 86 SYKKTASSVGG--TENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAV 259
S K+ +G NI+LN++FS GL+ W P C A+ SG+ G+ G YAV
Sbjct: 17 SSKENGEEIGSDAATNIVLNHEFSDGLNSWQPNCCDAFVVPASSGYHKGLTTEKGCCYAV 76
Query: 260 VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNP 439
V+ R E WQGLEQDIT+ VS G Y VSA V G QG V+V ATL+L + T+Y
Sbjct: 77 VTNRKECWQGLEQDITSGVSAGLTYTVSACVGASGTFQGSVDVLATLKLVYQNSETNYLF 136
Query: 440 VGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVAC 586
+ ASKE W LEG FSL+ MP V+FYLEGPPAG DL+I SV + C
Sbjct: 137 IAKKSASKECWEILEGLFSLSTMPDQVIFYLEGPPAGADLLIKSVVITC 185
Score = 117 bits (294), Expect = 2e-25
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 9/190 (4%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISY-KKTASSVGGT-------ENIILNYDFSKGLHPWNPIRCHAY 193
EGPP G DLLI SV I+ TA GT +NII+N F GL+ W+ C
Sbjct: 168 EGPPAGADLLIKSVVITCPSSTACDSSGTSSVSTDDDNIIVNPQFDDGLNSWSGRGCKVV 227
Query: 194 AASQWSGFLDG-IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIV 370
+ + DG I SG+ +A ++RT+ W G++QDIT +V Y V+A VR+ G
Sbjct: 228 SHDSMA---DGKITPMSGKYFASATERTQTWNGIQQDITGRVKRKLAYEVTAVVRIYGNN 284
Query: 371 QGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAG 550
+++ TL ++ AD Y + SV A+ + W KL+G F + + P VV +LEGPP G
Sbjct: 285 VTNADLRGTLYVKAADNRERYIGIASVQATDKDWVKLQGKFLINDSPSQVVVFLEGPPPG 344
Query: 551 VDLVIDSVTV 580
D+++++ +
Sbjct: 345 TDILLNNCVI 354
Score = 80.1 bits (196), Expect = 6e-14
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISYKKTA--------SSVGGTENIILNYDFSKGLHPWNPIRCHAY 193
EGPPPG D+L+++ I + A NI+ N + G + W P+
Sbjct: 339 EGPPPGTDILLNNCVIKHASKAPPPSPPVIEDAAFGVNIVTNTSLNDGTNGWFPLGNCTM 398
Query: 194 AASQWSGFLD--------GIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAF 349
+ S + G Y +V+ RT++W G Q IT++V Y VSA+
Sbjct: 399 SVQTGSPHIMPPMARDSLGAHEPLSGRYILVTNRTQNWMGPAQMITDKVKLYLTYQVSAW 458
Query: 350 VRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFY 529
V++ G G V L DG + G + S ++W+++ GSF + V+ Y
Sbjct: 459 VKI-GQASGPQSVNVAL---GVDGQ--WVNGGQIEISDDRWHEIGGSFRIEKQAAKVMVY 512
Query: 530 LEGPPAGVDLVIDSVTV------ACSRHKQSKEVKVPAR 628
++GP AGVDL++ + + A RH + + K+ R
Sbjct: 513 IQGPAAGVDLMVAGLQIFPVDRRARFRHLKRQTAKIRKR 551
>gb|AAG50641.1| xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana]
Length = 915
Score = 152 bits (383), Expect = 1e-35
Identities = 82/177 (46%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Frame = +2
Query: 101 ASSVGGTE-NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSG-ENYAVVSKRT 274
AS +G N+I+N+DFS G+H W+P C A+ + S G+ S +Y VV R
Sbjct: 20 ASIIGSDRTNVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGVLDPSKCGSYVVVKNRK 79
Query: 275 EHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVV 454
E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T+Y +
Sbjct: 80 ETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQTNYQFIAKTC 139
Query: 455 ASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQSKEVKVPA 625
KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+ H++S+ +V A
Sbjct: 140 VFKEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI----HRESEPERVTA 192
Score = 117 bits (293), Expect = 3e-25
Identities = 68/183 (37%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISYKKTASSVGGT-ENIILNYDFSKGLHPWNPIRCHAYAASQWSG 214
EGP PG+DLLI SVTI + V E I++N +F GL+ W+ C +
Sbjct: 166 EGPSPGIDLLIQSVTIHRESEPERVTAEDETIVVNPNFEDGLNNWSGRSCKIVLHDSMA- 224
Query: 215 FLDG-IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVK 391
DG I SG+ +A ++RT++W G++Q+IT +V VY +A VR+ G V+
Sbjct: 225 --DGKIVPESGKVFASATERTQNWNGIQQEITGKVQRKRVYEATAVVRIYGNNVTTATVQ 282
Query: 392 ATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDS 571
ATL +QN + Y + +V A+ ++W L+G F L VV Y+EGPP G D++++S
Sbjct: 283 ATLWVQNPNQRDQYIGISTVQATDKEWIHLKGKFLLNGSASRVVIYIEGPPPGTDILLNS 342
Query: 572 VTV 580
+TV
Sbjct: 343 LTV 345
Score = 70.1 bits (170), Expect = 6e-11
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTI------------SYKKTASSVGGTENIILNYDFSKGLH 163
R+ EGPPPG D+L++S+T+ S + A V N L+ D + G
Sbjct: 324 RVVIYIEGPPPGTDILLNSLTVKHAEKIPPSPPPSIENPAFGVNILTNSHLSDDTTNG-- 381
Query: 164 PWNPI-RCHAYAASQWSGFLDGIRGNS-------GENYAVVSKRTEHWQGLEQDITNQVS 319
W + C A L + +S Y +V+ RT+ W G Q IT+++
Sbjct: 382 -WFSLGNCTLSVAEGSPRILPPMARDSLGAHERLSGRYILVTNRTQTWMGPAQMITDKLK 440
Query: 320 TGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSL 499
Y +S +V+V + V L + + + G V + ++W+++ GSF +
Sbjct: 441 LFLTYQISVWVKVGSGINSPQNVNVALGIDS-----QWVNGGQVEINDDRWHEIGGSFRI 495
Query: 500 TNMPKNVVFYLEGPPAGVDLVIDSVTV 580
P + Y++GP +G+DL++ + +
Sbjct: 496 EKNPSKALVYVQGPSSGIDLMVAGLQI 522
>gb|AAZ79233.1| putative xylanase Xyn2 [Nicotiana tabacum]
Length = 918
Score = 151 bits (381), Expect = 2e-35
Identities = 79/154 (51%), Positives = 97/154 (62%)
Frame = +2
Query: 125 NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDI 304
NIILN++FS GL+ W+P C A+ S + G+ G YAVV+ R E WQGLEQDI
Sbjct: 32 NIILNHEFSDGLNSWHPNCCDAFVVPASSEYHKGLTTEEGCCYAVVTNRKECWQGLEQDI 91
Query: 305 TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLE 484
T+ VS G+ Y VSA V G QG EV ATL+L + T Y + ASKE W LE
Sbjct: 92 TSGVSAGSTYTVSACVGASGTFQGSAEVIATLKLVYQNSETSYLFIAKKSASKECWEILE 151
Query: 485 GSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVAC 586
GSFSL+ MP V+FYLEGPP+G DL+I SV + C
Sbjct: 152 GSFSLSTMPDQVIFYLEGPPSGADLLIKSVMITC 185
Score = 115 bits (288), Expect = 1e-24
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 9/190 (4%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISY-KKTASSVGGT-------ENIILNYDFSKGLHPWNPIRCHAY 193
EGPP G DLLI SV I+ TA GT +NII+N F G++ W+ C
Sbjct: 168 EGPPSGADLLIKSVMITCPSSTACDRSGTSSVSTDDDNIIVNPQFDDGINSWSGRGCKV- 226
Query: 194 AASQWSGFLDG-IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIV 370
+ DG I SG+ +A ++RT+ W G++QDIT +V Y V+A R+ G
Sbjct: 227 --ASHDSMADGKITPMSGKYFASATERTQTWNGIQQDITGRVKRKLAYEVTAVARIYGNN 284
Query: 371 QGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAG 550
+++ TL ++ AD Y + SV A+ + W KL+G F + + P VV +LEGPP G
Sbjct: 285 VTSADLRGTLYVKAADNRERYIGIASVQATDKDWVKLQGKFLINDSPSQVVVFLEGPPPG 344
Query: 551 VDLVIDSVTV 580
D++++++ +
Sbjct: 345 TDILLNNLVI 354
Score = 83.2 bits (204), Expect = 7e-15
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISYKKTA--SSVGGTE------NIILNYDFSKGLHPWNPIRCHAY 193
EGPPPG D+L++++ I + A SS E NII N + G + W P+
Sbjct: 339 EGPPPGTDILLNNLVIKHASKAPPSSPPVIEDAAFGVNIITNTSLNDGTNGWFPLGNCTM 398
Query: 194 AASQWSGFLD--------GIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAF 349
+ S + G Y +V+KRT++W G Q IT++V Y VSA+
Sbjct: 399 SVQTGSPHIMPPMARDSLGAHEPLSGRYILVTKRTQNWMGPAQMITDKVKLYLTYQVSAW 458
Query: 350 VRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFY 529
V++ G G V L + + + G + S ++W+++ GSF + V+ Y
Sbjct: 459 VKI-GQASGPQSVNVALGVDS-----QWVNGGQIEISDDRWHEIGGSFRIEKQAAKVMVY 512
Query: 530 LEGPPAGVDLVIDSVTV------ACSRHKQSKEVKVPAR 628
++GP AGVDL++ + + A RH + + K+ R
Sbjct: 513 IQGPAAGVDLMVAGLQIFPVDRRARFRHLKRQTAKIRKR 551
>ref|NP_176133.1| RXF12; hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis
thaliana]
gb|AAF82251.1| Identical to gene RXF12 from Arabidopsis thaliana gb|AB008015 and
contains three Cellulose binding PF|02018 domains and is
a member of Glycosyl hydrolase PF|00331 family
dbj|BAA88262.1| RXF12 [Arabidopsis thaliana]
dbj|BAB83869.1| xylan endohydrolase [Arabidopsis thaliana]
Length = 917
Score = 149 bits (377), Expect = 6e-35
Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Frame = +2
Query: 101 ASSVGGTE-NIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSG-ENYAVVSKRT 274
AS +G N+I+N+DFS G+H W+P C A+ + S G+ S +Y VV R
Sbjct: 20 ASIIGSDRTNVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGVLDPSKCGSYVVVKNRK 79
Query: 275 EHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVV 454
E WQGLEQDITN+V ++Y VSA V V G V G VEV ATL+L++ T+Y +
Sbjct: 80 ETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQSQTNYQFIAKTC 139
Query: 455 ASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQSK 607
KEKW +LEG FSL ++P+ VVFYLEGP G+DL+I SVT+ H++S+
Sbjct: 140 VFKEKWVRLEGMFSLPSLPEKVVFYLEGPSPGIDLLIQSVTI----HRESE 186
Score = 115 bits (289), Expect = 9e-25
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 4/185 (2%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTI---SYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQW 208
EGP PG+DLLI SVTI S + E I++N +F GL+ W+ C
Sbjct: 166 EGPSPGIDLLIQSVTIHRESEPELERVTAEDETIVVNPNFEDGLNNWSGRSCKIVLHDSM 225
Query: 209 SGFLDG-IRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVE 385
+ DG I SG+ +A ++RT++W G++Q+IT +V VY +A VR+ G
Sbjct: 226 A---DGKIVPESGKVFASATERTQNWNGIQQEITGKVQRKRVYEATAVVRIYGNNVTTAT 282
Query: 386 VKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVI 565
V+ATL +QN + Y + +V A+ ++W L+G F L VV Y+EGPP G D+++
Sbjct: 283 VQATLWVQNPNQRDQYIGISTVQATDKEWIHLKGKFLLNGSASRVVIYIEGPPPGTDILL 342
Query: 566 DSVTV 580
+S+TV
Sbjct: 343 NSLTV 347
Score = 70.1 bits (170), Expect = 6e-11
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTI------------SYKKTASSVGGTENIILNYDFSKGLH 163
R+ EGPPPG D+L++S+T+ S + A V N L+ D + G
Sbjct: 326 RVVIYIEGPPPGTDILLNSLTVKHAEKIPPSPPPSIENPAFGVNILTNSHLSDDTTNG-- 383
Query: 164 PWNPI-RCHAYAASQWSGFLDGIRGNS-------GENYAVVSKRTEHWQGLEQDITNQVS 319
W + C A L + +S Y +V+ RT+ W G Q IT+++
Sbjct: 384 -WFSLGNCTLSVAEGSPRILPPMARDSLGAHERLSGRYILVTNRTQTWMGPAQMITDKLK 442
Query: 320 TGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSL 499
Y +S +V+V + V L + + + G V + ++W+++ GSF +
Sbjct: 443 LFLTYQISVWVKVGSGINSPQNVNVALGIDS-----QWVNGGQVEINDDRWHEIGGSFRI 497
Query: 500 TNMPKNVVFYLEGPPAGVDLVIDSVTV 580
P + Y++GP +G+DL++ + +
Sbjct: 498 EKNPSKALVYVQGPSSGIDLMVAGLQI 524
>ref|XP_469240.1| putative xylan xylanohydrolase isoenzyme [Oryza sativa (japonica
cultivar-group)]
gb|AAR87197.1| putative xylan xylanohydrolase [Oryza sativa (japonica
cultivar-group)]
gb|AAP03380.1| putative xylan xylanohydrolase isoenzyme [Oryza sativa (japonica
cultivar-group)]
Length = 756
Score = 101 bits (251), Expect = 2e-20
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Frame = +2
Query: 116 GTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDG-IRGNSGENYAVVSKRTEHWQGL 292
G +NIILN +F GL W+ C DG + SG+ + + RT+ W G+
Sbjct: 19 GDDNIILNPEFDSGLDNWSGSGCKIELHDSLD---DGKVLAVSGKYFVAATGRTDTWNGV 75
Query: 293 EQDITNQVSTGTVYVVSAFVRVDGIVQ--GQVEVKATLRLQNADGSTHYNPVG-SVVASK 463
+QD+T+++ +Y V+A VR+ G EV+AT+ +QN DG Y V S S
Sbjct: 76 QQDVTSRLQRKLLYEVAATVRLSGAAATPSPCEVRATVAVQNTDGRQQYISVAKSPAVSD 135
Query: 464 EKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQSKEVKVPA 625
++W +L+G F L Y+EGPPAGVDL++DS+ V +H Q K PA
Sbjct: 136 KEWVQLQGKFLLNGTVAKAAIYIEGPPAGVDLLLDSLVV---KHAQ-KATPAPA 185
Score = 81.3 bits (199), Expect = 3e-14
Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
Frame = +2
Query: 38 EGPPPGVDLLIDSVTISYKKTASSVGGTE--------NIILNYDFSKGLHPWNPIRCHAY 193
EGPP GVDLL+DS+ + + + A+ + NI+ N D G++ W + A
Sbjct: 159 EGPPAGVDLLLDSLVVKHAQKATPAPAPDFKNLEYGANILQNSDLDDGVNGWFGLGSCAL 218
Query: 194 A------------ASQWSGFLDGIRGNSGE----NYAVVSKRTEHWQGLEQDITNQVSTG 325
+ A Q LDG G+ E + V+ R + W G Q IT++V+
Sbjct: 219 SVHGGAPRVLPPMARQSLSPLDGDDGDGDEPLNGKHIHVTNRAQTWMGPAQVITDRVTPY 278
Query: 326 TVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSF---S 496
Y VSA+VRV G Q + + A S N G V+A E+W ++ GSF S
Sbjct: 279 ATYQVSAWVRVGG--QQAAGKPQNINVAVAVDSQWLNG-GQVMALDERWYEIGGSFRVES 335
Query: 497 LTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+ P V+ Y++GP GVDL++ + V
Sbjct: 336 SSTPPSRVMLYVQGPDPGVDLMVAGLRV 363
>dbj|BAB39757.1| putative xylanase containing two cellulose binding domains
[Arabidopsis thaliana]
Length = 232
Score = 89.0 bits (219), Expect = 1e-16
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Frame = +2
Query: 122 ENIILNYDFSKGLHPWNPIRCHAYA-ASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQ 298
E IILN +F GL+ W C S SG + + SG+ +A ++R + W G++Q
Sbjct: 25 EKIILNPNFEDGLNNWTGRACKIVLHESMDSGKIVPL---SGKVFAAATQRKDTWNGIQQ 81
Query: 299 DITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNK 478
+I+ + VY V+A VR+ G V+ATL + NA+ Y + +V A+ + W +
Sbjct: 82 EISGRFRRKRVYEVTAVVRIFGNNVTSATVQATLWVLNANKREQYIVIANVQATDKNWVE 141
Query: 479 LEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
L+G F + P V+ YLEGPP D++++S+ V
Sbjct: 142 LKGKFVIHGSPSRVILYLEGPPPRADILLNSLVV 175
>ref|NP_001031593.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
Length = 661
Score = 89.0 bits (219), Expect = 1e-16
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Frame = +2
Query: 122 ENIILNYDFSKGLHPWNPIRCHAYA-ASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQ 298
E IILN +F GL+ W C S SG + + SG+ +A ++R + W G++Q
Sbjct: 25 EKIILNPNFEDGLNNWTGRACKIVLHESMDSGKIVPL---SGKVFAAATQRKDTWNGIQQ 81
Query: 299 DITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNK 478
+I+ + VY V+A VR+ G V+ATL + NA+ Y + +V A+ + W +
Sbjct: 82 EISGRFRRKRVYEVTAVVRIFGNNVTSATVQATLWVLNANKREQYIVIANVQATDKNWVE 141
Query: 479 LEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
L+G F + P V+ YLEGPP D++++S+ V
Sbjct: 142 LKGKFVIHGSPSRVILYLEGPPPRADILLNSLVV 175
Score = 78.6 bits (192), Expect = 2e-13
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 17/204 (8%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTISYKKTA--------SSVGGTENIILNYD-FSKGLHPWN 172
R+ EGPPP D+L++S+ + + K + G NI+ N + G PW
Sbjct: 154 RVILYLEGPPPRADILLNSLVVQHAKRNRPSPPPFYENPGFGVNIVENSEVLDGGTKPWF 213
Query: 173 PI-RCHAYAASQWSGFLDGIRGNS-------GENYAVVSKRTEHWQGLEQDITNQVSTGT 328
+ C L + ++ G NY VV+ RT+ W G Q IT+++
Sbjct: 214 TLGNCKLSVGQGAPRTLPPMARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFL 273
Query: 329 VYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNM 508
Y +SA+V++ V G + + + + N V + W+++ GSF L
Sbjct: 274 TYQISAWVKLGVGVSGSSMSPQNVNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQ 333
Query: 509 PKNVVFYLEGPPAGVDLVIDSVTV 580
P+NV+ Y++GP AG+DL+I ++ +
Sbjct: 334 PQNVMVYVQGPGAGIDLMIAALQI 357
>gb|AAO64897.1| At4g08160 [Arabidopsis thaliana]
dbj|BAC42019.1| putative xylan endohydrolase [Arabidopsis thaliana]
Length = 752
Score = 89.0 bits (219), Expect = 1e-16
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Frame = +2
Query: 122 ENIILNYDFSKGLHPWNPIRCHAYA-ASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQ 298
E IILN +F GL+ W C S SG + + SG+ +A ++R + W G++Q
Sbjct: 25 EKIILNPNFEDGLNNWTGRACKIVLHESMNSGKIVPL---SGKVFAAATQRKDTWNGIQQ 81
Query: 299 DITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNK 478
+I+ + VY V+A VR+ G V+ATL + NA+ Y + +V A+ + W +
Sbjct: 82 EISGRFRRKRVYEVTAVVRIFGNNVTSATVQATLWVLNANKREQYIVIANVQATDKNWVE 141
Query: 479 LEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
L+G F + P V+ YLEGPP D++++S+ V
Sbjct: 142 LKGKFVIHGSPSRVILYLEGPPPRADILLNSLVV 175
Score = 78.6 bits (192), Expect = 2e-13
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 17/204 (8%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTISYKKTA--------SSVGGTENIILNYD-FSKGLHPWN 172
R+ EGPPP D+L++S+ + + K + G NI+ N + G PW
Sbjct: 154 RVILYLEGPPPRADILLNSLVVQHAKRNRPSPPPFYENPGFGVNIVENSEVLDGGTKPWF 213
Query: 173 PI-RCHAYAASQWSGFLDGIRGNS-------GENYAVVSKRTEHWQGLEQDITNQVSTGT 328
+ C L + ++ G NY VV+ RT+ W G Q IT+++
Sbjct: 214 TLGNCKLSVGQGAPRTLPPMARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFL 273
Query: 329 VYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNM 508
Y +SA+V++ V G + + + + N V + W+++ GSF L
Sbjct: 274 TYQISAWVKLGVGVSGSSMSPQNVNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQ 333
Query: 509 PKNVVFYLEGPPAGVDLVIDSVTV 580
P+NV+ Y++GP AG+DL+I ++ +
Sbjct: 334 PQNVMVYVQGPGAGIDLMIAALQI 357
>ref|NP_192556.2| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
Length = 752
Score = 89.0 bits (219), Expect = 1e-16
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Frame = +2
Query: 122 ENIILNYDFSKGLHPWNPIRCHAYA-ASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQ 298
E IILN +F GL+ W C S SG + + SG+ +A ++R + W G++Q
Sbjct: 25 EKIILNPNFEDGLNNWTGRACKIVLHESMDSGKIVPL---SGKVFAAATQRKDTWNGIQQ 81
Query: 299 DITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNK 478
+I+ + VY V+A VR+ G V+ATL + NA+ Y + +V A+ + W +
Sbjct: 82 EISGRFRRKRVYEVTAVVRIFGNNVTSATVQATLWVLNANKREQYIVIANVQATDKNWVE 141
Query: 479 LEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
L+G F + P V+ YLEGPP D++++S+ V
Sbjct: 142 LKGKFVIHGSPSRVILYLEGPPPRADILLNSLVV 175
Score = 78.6 bits (192), Expect = 2e-13
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 17/204 (8%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTISYKKTA--------SSVGGTENIILNYD-FSKGLHPWN 172
R+ EGPPP D+L++S+ + + K + G NI+ N + G PW
Sbjct: 154 RVILYLEGPPPRADILLNSLVVQHAKRNRPSPPPFYENPGFGVNIVENSEVLDGGTKPWF 213
Query: 173 PI-RCHAYAASQWSGFLDGIRGNS-------GENYAVVSKRTEHWQGLEQDITNQVSTGT 328
+ C L + ++ G NY VV+ RT+ W G Q IT+++
Sbjct: 214 TLGNCKLSVGQGAPRTLPPMARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFL 273
Query: 329 VYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNM 508
Y +SA+V++ V G + + + + N V + W+++ GSF L
Sbjct: 274 TYQISAWVKLGVGVSGSSMSPQNVNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQ 333
Query: 509 PKNVVFYLEGPPAGVDLVIDSVTV 580
P+NV+ Y++GP AG+DL+I ++ +
Sbjct: 334 PQNVMVYVQGPGAGIDLMIAALQI 357
>ref|ZP_00503824.1| Glycoside hydrolase, family 10:Clostridium cellulosome enzyme,
dockerin type I:Carbohydrate-binding, CenC-like
[Clostridium thermocellum ATCC 27405]
gb|EAM47104.1| Glycoside hydrolase, family 10:Clostridium cellulosome enzyme,
dockerin type I:Carbohydrate-binding, CenC-like
[Clostridium thermocellum ATCC 27405]
Length = 639
Score = 73.2 bits (178), Expect = 7e-12
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = +2
Query: 224 GIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLR 403
G +SG V+ RT+ W G+ QD+ ++++ G Y VSA+V+V G G +VK +++
Sbjct: 57 GTEAHSGNYSVFVTDRTQDWNGVAQDMLDKLTVGMTYQVSAWVKVAG--TGSHQVKISMK 114
Query: 404 LQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNM-PKNVVFYLEGPPAGVDLVIDSVTV 580
Y+ + S+ +W +L G +S T N+ Y+EGP GV +D VTV
Sbjct: 115 KVETGKEPVYDNIASITVEGSEWYRLSGPYSYTGTNVTNLELYIEGPQPGVSYYVDDVTV 174
>emb|CAE51307.1| beta-1,4-xylanase [Clostridium thermocellum]
Length = 639
Score = 71.6 bits (174), Expect = 2e-11
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +2
Query: 224 GIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLR 403
G +SG V+ RT+ W G+ QD+ ++++ G Y VSA+V+V G G +VK ++
Sbjct: 57 GTEAHSGNYSVFVTDRTQDWNGVAQDMLDKLTVGMTYQVSAWVKVAG--TGSHQVKIPMK 114
Query: 404 LQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNM-PKNVVFYLEGPPAGVDLVIDSVTV 580
Y+ + S+ +W +L G +S T N+ Y+EGP GV +D VTV
Sbjct: 115 KVETGKEPVYDNIPSITVEGSEWYRLSGPYSYTGTNVTNLELYIEGPQPGVSYYVDDVTV 174
>gb|AAD27896.1| putative xylan endohydrolase [Arabidopsis thaliana]
emb|CAB81152.1| putative xylan endohydrolase [Arabidopsis thaliana]
Length = 520
Score = 68.9 bits (167), Expect = 1e-10
Identities = 36/113 (31%), Positives = 62/113 (54%)
Frame = +2
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADG 421
G NY VV+ RT+ W G Q IT+++ Y +SA+V++ V G + + +
Sbjct: 13 GGNYIVVTNRTQTWMGPAQMITDKIKLFLTYQISAWVKLGVGVSGSSMSPQNVNIALSVD 72
Query: 422 STHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+ N V + W+++ GSF L P+NV+ Y++GP AG+DL+I ++ +
Sbjct: 73 NQWVNGGQVEVTVGDTWHEIAGSFRLEKQPQNVMVYVQGPGAGIDLMIAALQI 125
>gb|AAB95325.1| family 10 xylanase [Caldicellulosiruptor sp. Rt69B.1]
Length = 1595
Score = 62.0 bits (149), Expect = 2e-08
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = +2
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA 415
+SG VS R + WQG D+TN + G Y S +V + + E+ T++ +NA
Sbjct: 229 HSGSKSLYVSGRADTWQGARIDMTNLLEKGKDYQFSIWVYQNS--GSEQEITLTMQRKNA 286
Query: 416 DGSTHYNPVG--SVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
D ST Y+ + VAS W ++ GS+++ ++FY+E P A +D +D TV
Sbjct: 287 DDSTKYDTIKWRQKVASGV-WTEVSGSYTVPQTATQLIFYVESPNATLDFYLDDFTV 342
Score = 60.5 bits (145), Expect = 5e-08
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Frame = +2
Query: 218 LDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKAT 397
+D + +S VS R + WQG + D+TN + G Y S +V + ++ T
Sbjct: 380 VDNVYYHSETKALYVSGRADTWQGAQIDMTNLLEKGKDYQFSIWVYQNS--GSDQKITLT 437
Query: 398 LRLQNADGSTHYNPVG-SVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSV 574
++ +NAD ST+Y+ + W ++ GS+++ ++FY+E P A +D +D
Sbjct: 438 MQRKNADDSTNYDTIKWQQTVPSGVWTEVSGSYTVPQTATQLIFYVESPNATLDFYLDDF 497
Query: 575 TVACSRHKQSKEVKVPARA 631
TV V +PA A
Sbjct: 498 TVI-----DKNPVTIPAAA 511
Score = 41.6 bits (96), Expect = 0.022
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +2
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADG 421
G+ VS R+ W G D+T+ VS T+Y VS FV + + + V A ++ + +
Sbjct: 74 GDYSLKVSGRSAAWDGAIVDVTSSVSVNTMYTVSLFVYHNDVKPQRFSVYAYVKDSSGE- 132
Query: 422 STHYNPVGSVVASKEKWNKLEGSFSLT 502
Y V V + W ++ G F++T
Sbjct: 133 --RYIQVADKVVMPQYWKQIFGRFTIT 157
>gb|AAT48119.1| xylanase [Ruminococcus albus]
Length = 542
Score = 55.5 bits (132), Expect = 1e-06
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Frame = +2
Query: 218 LDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQ---GQVEV 388
LD SG VS RT W G + ST T S + G++Q E+
Sbjct: 299 LDNKNYYSGNQSLFVSGRTSEWNGAAIPL----STSTFVPGSTYSFSTGVMQMSGSATEM 354
Query: 389 KATLRLQNADGSTHYNPVGSVVASKEKWNKLEG-SFSLTNMPKNVVFYLEGPPAGVDLVI 565
K T++ +++ G+T Y+ V S AS W KLE ++++ + +++ Y+E P + D I
Sbjct: 355 KLTMQYKDSSGTTQYDQVASATASNGVWTKLENKAYTIPSGASDLILYVEAPDSLTDFYI 414
Query: 566 DS 571
D+
Sbjct: 415 DN 416
>emb|CAA90745.1| endoxylanase [Cellulomonas fimi]
Length = 1187
Score = 53.1 bits (126), Expect = 7e-06
Identities = 33/152 (21%), Positives = 67/152 (44%)
Frame = +2
Query: 134 LNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQ 313
L+ DF GL W P S + G A+V+ RT+ W G+ +T+
Sbjct: 253 LSNDFEAGLGVWGPRGDATVTLSD--------DAHGGAQAALVAGRTQAWHGIGATVTDV 304
Query: 314 VSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSF 493
TG Y V A+V++ +++ +++ NA ST+ + + + W ++ +
Sbjct: 305 FQTGRTYTVDAWVKLAAGATEPADLRISVQRDNAGESTYDTVTTATGVTADAWTHVQAQY 364
Query: 494 SLTNMPKNVVFYLEGPPAGVDLVIDSVTVACS 589
++ ++ + Y+E + ++D V V+ S
Sbjct: 365 TMA-AAESALLYVESSSSLASFLVDDVVVSGS 395
>emb|CAH60863.1| endo-1,4-beta-xylanase [Hordeum vulgare subsp. vulgare]
Length = 554
Score = 52.0 bits (123), Expect = 2e-05
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDITNQVSTGTV-YVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +VS R + GL Q IT V Y V+ ++ + V+ L + + DG+
Sbjct: 52 YILVSGRADEKDGLCQAITTAALKPRVTYRVAGWISLGARAARGATVRVNLGVSDDDGNG 111
Query: 428 HYNPV--GSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+ V G+V A + W ++ G+F L+ P++ Y++G PAGVD+ + + V
Sbjct: 112 DESLVECGAVCAGSDGWTEIMGAFRLSTEPRSAAVYVQGAPAGVDVKVMDLRV 164
>emb|CAH60862.1| endo-1,4-beta-xylanase [Hordeum vulgare]
Length = 554
Score = 52.0 bits (123), Expect = 2e-05
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDITNQVSTGTV-YVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +VS R + GL Q IT V Y V+ ++ + V+ L + + DG+
Sbjct: 52 YILVSGRADEKDGLCQAITTAALKPRVTYRVAGWISLGARAARGATVRVNLGVSDDDGNG 111
Query: 428 HYNPV--GSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+ V G+V A + W ++ G+F L+ P++ Y++G PAGVD+ + + V
Sbjct: 112 DESLVECGAVCAGSDGWTEIMGAFRLSTEPRSTAVYVQGAPAGVDVKVMDLRV 164
>dbj|BAB39493.1| xylanase B [Ruminococcus albus]
Length = 828
Score = 52.0 bits (123), Expect = 2e-05
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 2/168 (1%)
Frame = +2
Query: 122 ENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQD 301
E + + F G + W+ + A+S + G VS RT++W G E +
Sbjct: 267 EGTLYSATFENGTNYWSGRGSASVASSSSKAY-------EGSKSLYVSGRTDNWNGGEVE 319
Query: 302 I-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNK 478
+ T+ G Y SA V Q+ ++ + +G+T Y + + KW K
Sbjct: 320 VNTSTFKPGNSYSFSAMVNPAESTTVQLSMQ-----YDQNGTTKYTQIAEGSCTAGKWTK 374
Query: 479 LEG-SFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHKQSKEVKV 619
LE SF++ + NV Y+E P + D+ +D +A + S + V
Sbjct: 375 LENTSFTIPSGASNVKMYVEAPDSLCDIYVDRAIIADKGYVASGDTPV 422
>emb|CAB65753.1| xylanase 10B precursor [Polyplastron multivesiculatum]
Length = 533
Score = 49.3 bits (116), Expect = 1e-04
Identities = 28/112 (25%), Positives = 53/112 (47%)
Frame = +2
Query: 233 GNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQN 412
G +G++Y V++R ++W G + D+ + + G Y+VSA+++ + ++ +
Sbjct: 65 GKTGDSYLAVTEREKNWNGAQYDLGKKCTPGGQYLVSAWLK----TPWYCNICLSMPYTD 120
Query: 413 ADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVID 568
G HYN + VV+ + E FS+ + +V Y E D ID
Sbjct: 121 GSGEAHYNNLKCVVSQGDWVEIKEYKFSMPSGCTDVFLYFENTSGNNDFYID 172
>gb|EAM76095.1| Endo-1,4-beta-xylanase [Kineococcus radiotolerans SRS30216]
ref|ZP_00616199.1| Endo-1,4-beta-xylanase [Kineococcus radiotolerans SRS30216]
Length = 974
Score = 47.4 bits (111), Expect = 4e-04
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 2/189 (1%)
Frame = +2
Query: 20 RLXXXXEGPPPGVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAA 199
+L E P +D V I+ + A GT + F G W R A A
Sbjct: 216 QLELYLESPDATQAFYVDDVRITGETAAPVQPGTTPPVTTA-FDGGPDGWTA-RGDATVA 273
Query: 200 SQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQ 379
+G G SG +V S RT+ W G D+T ++ G S + R + G
Sbjct: 274 HVTAG------GRSGGALSV-SGRTQTWHGPALDVTPNLAVGRTVEASVWAR---LAPGS 323
Query: 380 VEVKATLRLQN--ADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGV 553
+ TL +Q A T Y + + + W ++ G+++L + Y+EG AG
Sbjct: 324 APAQLTLSIQRDRAGTQTAYENIAGAEVTADAWTRIRGTYTLGSPVDRAQVYVEG-TAGA 382
Query: 554 DLVIDSVTV 580
+ID T+
Sbjct: 383 AFLIDDFTL 391
>sp|P36917|XYNA_THESA Endo-1,4-beta-xylanase A precursor (Xylanase A) (1,4-beta-D-xylan
xylanohydrolase A)
Length = 1157
Score = 47.4 bits (111), Expect = 4e-04
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 9/197 (4%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYA 196
+ L E P P ++ ID V ++ + VG N+I N F G
Sbjct: 164 KTLYMYVESPDPTLEYYIDDVVVTTQNPIQ-VG---NVIANETFENG------------N 207
Query: 197 ASQWSG----FLDGIRG--NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVR- 355
S W G + + G +SG+ + + RT +W G D+T ++ G Y V +V+
Sbjct: 208 TSGWIGTGSSVVKAVYGVAHSGDYSLLTTGRTANWNGPSYDLTGKIVPGQQYNVDFWVKF 267
Query: 356 VDGIVQGQVEVKATLR-LQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMP-KNVVFY 529
V+G ++KAT++ + D N +V +K +W +++GSF+L + Y
Sbjct: 268 VNG--NDTEQIKATVKATSDKDNYIQVNDFANV--NKGEWTEIKGSFTLPVADYSGISIY 323
Query: 530 LEGPPAGVDLVIDSVTV 580
+E ++ ID +V
Sbjct: 324 VESQNPTLEFYIDDFSV 340
>pir||A48490 endo-1,4-beta-xylanase (EC 3.2.1.8) A precursor -
Thermoanaerobacterium saccharolyticum (strain B6A-RI)
gb|AAA21812.1| endoxylanase
Length = 1231
Score = 47.4 bits (111), Expect = 4e-04
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 9/197 (4%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYA 196
+ L E P P ++ ID V ++ + VG N+I N F G
Sbjct: 164 KTLYMYVESPDPTLEYYIDDVVVTTQNPIQ-VG---NVIANETFENG------------N 207
Query: 197 ASQWSG----FLDGIRG--NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVR- 355
S W G + + G +SG+ + + RT +W G D+T ++ G Y V +V+
Sbjct: 208 TSGWIGTGSSVVKAVYGVAHSGDYSLLTTGRTANWNGPSYDLTGKIVPGQQYNVDFWVKF 267
Query: 356 VDGIVQGQVEVKATLR-LQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMP-KNVVFY 529
V+G ++KAT++ + D N +V +K +W +++GSF+L + Y
Sbjct: 268 VNG--NDTEQIKATVKATSDKDNYIQVNDFANV--NKGEWTEIKGSFTLPVADYSGISIY 323
Query: 530 LEGPPAGVDLVIDSVTV 580
+E ++ ID +V
Sbjct: 324 VESQNPTLEFYIDDFSV 340
>ref|ZP_00504483.1| Glycoside hydrolase, family 10:Clostridium cellulosome enzyme,
dockerin type I:Carbohydrate-binding, CenC-like
[Clostridium thermocellum ATCC 27405]
gb|EAM46439.1| Glycoside hydrolase, family 10:Clostridium cellulosome enzyme,
dockerin type I:Carbohydrate-binding, CenC-like
[Clostridium thermocellum ATCC 27405]
dbj|BAA21516.2| xylanase [Clostridium thermocellum]
Length = 619
Score = 47.4 bits (111), Expect = 4e-04
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 8/153 (5%)
Frame = +2
Query: 143 DFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVST 322
DF GL+ W P + + SG VS RT W G D T+ ++
Sbjct: 39 DFETGLNGWGPRGPETVELTTEEAY-------SGRYSLKVSGRTSTWNGPMVDKTDVLTL 91
Query: 323 GTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTH-YNPVGSVVASKEKWNKLEGSFSL 499
G Y + +V+ G E + +L+LQ DG+ Y + + K W LEG ++
Sbjct: 92 GESYKLGVYVKFVGDSYSN-EQRFSLQLQYNDGAGDVYQNIKTATVYKGTWTLLEGQLTV 150
Query: 500 TNMPKNVVFYLE-------GPPAGVDLVIDSVT 577
+ K+V Y+E P +D ID T
Sbjct: 151 PSHAKDVKIYVETEFKNSPSPQDLMDFYIDDFT 183
>gb|AAB08046.1| XynA precursor [Thermoanaerobacterium thermosulfurigenes]
Length = 1234
Score = 46.6 bits (109), Expect = 7e-04
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYA 196
+ L E P P ++ ID V ++ + VG N+I N F G
Sbjct: 163 KTLYMYVESPDPTLEYYIDDVVVT-PQNPIQVG---NVITNGTFENG------------N 206
Query: 197 ASQWSG----FLDGIRG--NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVR- 355
S W G + + G +SG + + RT +W G D+T ++ G Y V +V+
Sbjct: 207 TSGWVGTGSSVVKAVYGVAHSGGYSLLTTGRTANWNGPSYDLTGKIVPGQQYNVDFWVKF 266
Query: 356 VDGIVQGQVEVKATLR-LQNADGSTHYNPVGSVVASKEKWNKLEGSFSL-TNMPKNVVFY 529
V+G ++KAT++ N D N +V +K +W +++GSF+L V Y
Sbjct: 267 VNG--NDTEQIKATVKATSNKDNYIQVNDFVNV--NKGEWTEIKGSFTLPVTDYSGVSIY 322
Query: 530 LEGPPAGVDLVIDSVTV 580
+E ++ ID +V
Sbjct: 323 VESQNPTLEFYIDDFSV 339
>gb|AAA85198.1| XynA [Ruminococcus albus]
Length = 680
Score = 46.2 bits (108), Expect = 9e-04
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAF-VRVDGIVQGQVE--VKATLRL 406
+ G VS RT++W G ++ +GT S + + D + + E +K T++
Sbjct: 320 SEGRGSLFVSGRTDNWNGASIEL----DSGTFKQGSTYSFKTDAMQKSGKEATLKFTMQY 375
Query: 407 QNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVT 577
ADG HY+ + A +W LEG +++ + +V Y+E P + D ID+ +
Sbjct: 376 TAADGD-HYDQIAQQTAPDGEWITLEGDYTIPDDATKLVLYVESPDSLTDFYIDNAS 431
>emb|CAA07173.1| endo-1,4-beta-xylanase [Bacillus sp. BP-23]
Length = 1086
Score = 45.1 bits (105), Expect = 0.002
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +2
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQV--EVKATLRLQNA 415
G+ + RTE W G +T+ V V +S +V+ +V G ++K T+ ++
Sbjct: 69 GKQSLQTTGRTEAWNGPSLSLTDVVHKNEVVEISGYVK---LVAGSAPPDLKFTVERRDR 125
Query: 416 DGSTHYNPVGSV-VASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
+G T Y+ V + + +KW KL+G +S +++ YLE A ++D +
Sbjct: 126 NGDTQYDQVNAAEQVTDQKWVKLQGQYSY-EQGSSLLLYLESTDAKAAYLLDEFQI 180
>gb|AAK73567.1| 1,4-beta-D xylan xylanohydrolase [Hordeum vulgare]
Length = 556
Score = 44.3 bits (103), Expect = 0.003
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + +GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEEGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAF61649.1| beta-1,4-xylanase XynA precursor [Caldibacillus cellulovorans]
Length = 921
Score = 44.3 bits (103), Expect = 0.003
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Frame = +2
Query: 239 SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA- 415
SG VS RTE W G DIT+ + G Y SA+V+ + G + ++ +Q
Sbjct: 69 SGAYGLSVSGRTETWHGPTLDITSYIQVGKTYQFSAWVK---LPSGSSNTRISMTMQRTM 125
Query: 416 DGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPP-AGVDLVIDSVTV 580
+ +Y + A W +L+ + L N+ Y E P A ID V +
Sbjct: 126 QDTVYYEQIYFDTALSGNWIQLKAQYKLYEPAVNLQVYFEAPDHATQSFYIDDVRI 181
>gb|AAK73557.1| truncated 1,4-beta-D xylan xylanohydrolase [Expression vector
pFL726]
Length = 546
Score = 43.5 bits (101), Expect = 0.006
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAK73564.1| truncated 1,4-beta-D xylan xylanohydrolase [Expression vector
pFL728]
Length = 501
Score = 43.5 bits (101), Expect = 0.006
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAK73562.1| 1,4-beta-D xylan xylanohydrolase [Hordeum vulgare]
gb|AAK73560.1| 1,4-beta-D xylan xylanohydrolase [Expression vector pFL723]
Length = 556
Score = 43.5 bits (101), Expect = 0.006
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAK73563.1| truncated 1,4-beta-D xylan xylanohydrolase [Expression vector
pFL727]
Length = 536
Score = 43.5 bits (101), Expect = 0.006
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAK73561.1| truncated 1,4-beta-D xylan xylanohydrolase [Expression vector
pFL725]
Length = 551
Score = 43.5 bits (101), Expect = 0.006
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAK73566.1| endo-xylanase GFP fusion protein [Expression vector pFL747]
Length = 515
Score = 43.5 bits (101), Expect = 0.006
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 168
>gb|AAB95326.1| family 10 xylanase [Caldicellulosiruptor sp. Rt69B.1]
Length = 1779
Score = 43.1 bits (100), Expect = 0.008
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Frame = +2
Query: 239 SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNAD 418
+G++ VS R+ W G+ D+ N ++ GT +VVSA+V+ Q V + D
Sbjct: 63 NGKSSIRVSNRSSIWDGVAVDVKNIMNNGTTWVVSAYVK----HSYQKPVAFGISAVYDD 118
Query: 419 GS-THYNPVGSVVASKEKWNKLEGSF--SLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
GS +G VVA W K+ G + +++N+ ++ +GVD +D + +
Sbjct: 119 GSGVKSTLIGEVVAIPNYWKKIVGKWTPNISNVRNLLIVVHTIVESGVDYNVDYIQI 175
>gb|AAT37531.1| xylanase B [Clostridium cellulovorans]
Length = 607
Score = 43.1 bits (100), Expect = 0.008
Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 2/174 (1%)
Frame = +2
Query: 62 LLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNS 241
+L + S A+ V + ++++ F G W+ + + S S +S
Sbjct: 11 VLSAGIVASAFAVATPVYAEDALLISSTFEGGTDGWSTMGTTTISPSTLS--------HS 62
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVE-VKATLRLQNAD 418
G VS R W G T+ + G Y +S++V + + + L+ ++
Sbjct: 63 GNGSLYVSGRAASWAGPCNIRTDVLKAGNTYNLSSYVMYNDASAADTQPISFMLKYTDST 122
Query: 419 GSTHYNPVGSVVASKEKWNKLEG-SFSLTNMPKNVVFYLEGPPAGVDLVIDSVT 577
Y P+ +V +K +W K+E ++ + + + Y E ++ +D VT
Sbjct: 123 NKAFYVPIATVTVNKGEWTKIENTAYKIPAEATSAMIYWETTGTMINYYVDDVT 176
>emb|CAH60861.1| endo-1,4-beta-xylanase [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 42.0 bits (97), Expect = 0.017
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 YAVVSKRTEHWQGLEQDI-TNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
Y +V+ R + GL I + + Y V+ ++ + V+ L +++ +G+
Sbjct: 53 YVLVAGRADEEDGLRLPIPVDTLKPRLTYRVAGWISLGAARGTSHPVRIDLGVED-NGNE 111
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ ++ G PAGVD+ + + V HK
Sbjct: 112 TLVECGAVCAKEGGWSEIMGAFRLRTEPRSAAVFVHGAPAGVDVKVMDLRVYPVDHK 168
>dbj|BAB20931.1| xylanase A [Clostridium josui]
Length = 1050
Score = 41.6 bits (96), Expect = 0.022
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Frame = +2
Query: 248 NYAV-VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGS 424
+YA+ V RT W G + VS G+ Y V+A+V++ I +++ + ++ N +
Sbjct: 233 SYALKVENRTMTWHGPSLHVEKNVSQGSEYKVTAWVKL--ISPESTQLQLSTQVGNGGSA 290
Query: 425 THYNPVGSVVASKEKWNKLEGSFSLTNMPKN-VVFYLE-GPPAGVDLVIDSVT 577
++ + +++ + W K EG++ N+ + Y+E A ID ++
Sbjct: 291 SYVSLAAKTISTADGWVKFEGTYRYNNVSSGYITIYVESASSANASFYIDDIS 343
>gb|AAD54768.1| endo-1,4-beta-xylanase [Cellulomonas pachnodae]
Length = 1183
Score = 41.2 bits (95), Expect = 0.029
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Frame = +2
Query: 62 LLIDSVTISYKKTASSVG-GTENIILNYDFS-KGLHPWNPIRCHAYAASQWSGFLDGIRG 235
LL+D + ++ +T++ G +I + DF + L W P + A + + G G
Sbjct: 194 LLVDDIVVTTTETSTGEGPAAGTVIADTDFDDQTLQGWVPRQPDDTAPTL--AVVAG--G 249
Query: 236 NSGENYAV-VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVR-VDGIVQGQVEVKATLRLQ 409
G YA VS R GL+ D+ +G A+VR DG G++ + A R
Sbjct: 250 ADGTGYAAQVSDRDSDGDGLQYDVAAAGVSGATLQYEAWVRFADGEPAGEMTLSA--RTV 307
Query: 410 NADGSTHYNPVGSVV-ASKEKWNKLEGSFSL 499
NA G+T Y+ + S+ A+ + W K+ G+F++
Sbjct: 308 NA-GATAYSNLSSISGATNDGWTKVGGTFTM 337
>gb|AAG06171.1| hypothetical protein PA2783 [Pseudomonas aeruginosa PAO1]
ref|NP_251473.1| hypothetical protein PA2783 [Pseudomonas aeruginosa PAO1]
Length = 599
Score = 41.2 bits (95), Expect = 0.029
Identities = 36/153 (23%), Positives = 52/153 (33%)
Frame = +2
Query: 53 GVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIR 232
G LL+D + + + A + YDF G+ W+ + A A S
Sbjct: 429 GASLLVDEMNLQEAQAAPPSVPPAPKRIAYDFESGIGGWSGVHASARATRVAS------- 481
Query: 233 GNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQN 412
+G +R G + + G Y SA VRV Q A L L++
Sbjct: 482 --AGRLALEAYQRRYAGTGASTSLLGNLEAGRTYAFSADVRVGDGRGSQAMTYAYLYLES 539
Query: 413 ADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMP 511
Y P+G V +W L G L P
Sbjct: 540 QGRPGEYLPLGYKVVENGRWASLRGQVQLPKGP 572
>gb|AAW62373.1| endo-1,4-beta-xylanase [Cellulomonas flavigena]
Length = 185
Score = 40.4 bits (93), Expect = 0.049
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Frame = +2
Query: 251 YAV-VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGST 427
YAV VS R QG++ D+T++ + G Y VSA+V+ +G G + + ++ + D +
Sbjct: 46 YAVRVSDRVSQGQGIQFDVTDKATPGASYDVSAWVKFEG-TPGDMTL-SSRTVTGEDSAA 103
Query: 428 HYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVD------LVIDSVTV 580
N V S +W + G+F++ Y E A + V+D VTV
Sbjct: 104 FSNLVQFTGLSSSQWVNVTGTFTMPAFDTAAEIYFETKWAQGEAGNTSTFVVDDVTV 160
>gb|AAD30363.1| XynA [Caldicellulosiruptor sp. Tok7B.1]
Length = 1770
Score = 40.4 bits (93), Expect = 0.049
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 239 SGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNAD 418
+G++ VS R+ W G+ D+ N ++ GT +VVSA+V+ Q V + D
Sbjct: 63 NGKSSVRVSNRSSIWDGVAVDVKNIMNNGTTWVVSAYVK----HSYQKPVAFGISAVYDD 118
Query: 419 GS-THYNPVGSVVASKEKWNKLEGSFS 496
GS +G VVA W K+ G ++
Sbjct: 119 GSGVKSTLIGEVVAIPNYWKKIVGKWT 145
>gb|AAK73559.1| 1,4-beta-D xylan xylanohydrolase [Hordeum vulgare]
Length = 497
Score = 40.4 bits (93), Expect = 0.049
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 443 GSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTVACSRHK 598
G+V A + W+++ G+F L P++ Y+ G PAGVD+ + + V HK
Sbjct: 58 GAVCAKEGGWSEIMGAFRLRTEPRSAAVYVHGAPAGVDVKVMDLRVYPVDHK 109
>gb|AAB87372.1| xylanase [Caldicellulosiruptor saccharolyticus]
ref|ZP_00884870.1| Glycoside hydrolase, family 10 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gb|EAP43335.1| Glycoside hydrolase, family 10 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 700
Score = 40.4 bits (93), Expect = 0.049
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Frame = +2
Query: 218 LDGIRGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKAT 397
LD + + G VS RT W G + I V G Y S +V + + +
Sbjct: 218 LDNSKFHEGNESLYVSGRTAFWHGAKIPIIKYVVPGKRYKFSIWVYHTSMDLKRFSILVQ 277
Query: 398 LRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPK--NVVFYLEGPPAGVDLVIDS 571
++ + + Y+ + S + + W ++ GS+ + + K + FY+E P + +D
Sbjct: 278 RKMAD-EAQYRYDWITSKEVAGDGWEEISGSYVVPDNGKIEELEFYIESPDPTLSFWVDD 336
Query: 572 VTVACSRHKQSKEVKVPA 625
T++ + Q +P+
Sbjct: 337 FTISDTMKLQQPNYSLPS 354
>ref|ZP_00968829.1| hypothetical protein PaerC_01001778 [Pseudomonas aeruginosa C3719]
Length = 599
Score = 40.0 bits (92), Expect = 0.064
Identities = 35/153 (22%), Positives = 52/153 (33%)
Frame = +2
Query: 53 GVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIR 232
G LL+D + + ++A + YDF G+ W+ + A S
Sbjct: 429 GASLLVDEMNLQEAQSAPPSVPPAPKRIAYDFESGIGGWSGVHASTRATRVAS------- 481
Query: 233 GNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQN 412
+G +R G + + G Y SA VRV Q A L L++
Sbjct: 482 --AGRLALEAYQRRYAGTGASTSLLGNLEAGRTYAFSADVRVGDGRGSQAMTYAYLYLES 539
Query: 413 ADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMP 511
Y P+G V +W L G L P
Sbjct: 540 QGRPGEYLPLGYKVVENGRWASLRGQVQLPKGP 572
>ref|ZP_00136102.1| hypothetical protein Paer03000379 [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 602
Score = 39.7 bits (91), Expect = 0.084
Identities = 35/153 (22%), Positives = 51/153 (33%)
Frame = +2
Query: 53 GVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIR 232
G LL+D + + + A + YDF G+ W+ + A S
Sbjct: 432 GASLLVDEMNLQEAQAAPPSVPPAPKRIAYDFESGIGGWSGVHASTRATRVAS------- 484
Query: 233 GNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQN 412
+G +R G + + G Y SA VRV Q A L L++
Sbjct: 485 --AGRLALEAYQRRYAGTGASTSLLGNLEAGRTYAFSADVRVGDGRGSQAMTYAYLYLES 542
Query: 413 ADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMP 511
Y P+G V +W L G L P
Sbjct: 543 QGRPGEYLPLGYKVVENGRWASLRGQVQLPKGP 575
>gb|AAD32594.1| family 10 xylanase XynC [Thermotoga sp. strain FjSS3-B.1]
Length = 1020
Score = 39.7 bits (91), Expect = 0.084
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +2
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA 415
++G N +S+R+ W+G + D+ + V G Y +V D + ++ T + +N
Sbjct: 202 HTGRNALFISERSASWEGTQFDLKSIVKPGKTYTFEMWVYQDSGSPVGILMRMTRKFENE 261
Query: 416 DGSTHYNPVGSVVASKEKWNKLEGSFSLTN--MPKNVVFYLEGPPAGVDLVIDSVTV 580
+ H + KW KL G F L +V Y+ + D +D V +
Sbjct: 262 ITTKHPIWLYGRTVPSGKWVKLFGIFGLPEGIDVDQLVLYVYTDGSNTDFYVDDVKI 318
>gb|AAD32593.2| family 10 xylanase XynB [Thermotoga sp. strain FjSS3-B.1]
Length = 1055
Score = 39.7 bits (91), Expect = 0.084
Identities = 31/110 (28%), Positives = 45/110 (40%)
Frame = +2
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADG 421
GE V RT W G+E D+T +V+TGT Y++S V ++ + L +
Sbjct: 78 GEYSLKVENRTSVWDGVEIDLTGKVNTGTDYLLSFHVYQ---TSDSPQLFSVLARTEDEK 134
Query: 422 STHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDS 571
Y + V W ++ FS T EG PA L+I S
Sbjct: 135 GERYKILADKVVVPNYWKEILVPFSPT---------FEGTPAKFSLIITS 175
>emb|CAA87069.1| xylanase [Thermotoga neapolitana]
sp|Q60042|XYNA_THENE Endo-1,4-beta-xylanase A precursor (Xylanase A) (1,4-beta-D-xylan
xylanohydrolase A) (Endoxylanase)
Length = 1055
Score = 39.7 bits (91), Expect = 0.084
Identities = 31/110 (28%), Positives = 45/110 (40%)
Frame = +2
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADG 421
GE V RT W G+E D+T +V+TGT Y++S V ++ + L +
Sbjct: 78 GEYSLKVENRTSVWDGVEIDLTGKVNTGTDYLLSFHVYQ---TSDSPQLFSVLARTEDEK 134
Query: 422 STHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDS 571
Y + V W ++ FS T EG PA L+I S
Sbjct: 135 GERYKILADKVVVPNYWKEILVPFSPT---------FEGTPAKFSLIITS 175
>emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus tropicalis]
Length = 505
Score = 37.7 bits (86), Expect = 0.32
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +2
Query: 107 SVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQ 286
++GG ++I ++ + + L PWN C G ++G+ S +Y + KR Q
Sbjct: 345 AIGGLDSIPISLETGQDLVPWN--LCKPTVCDLSGGLVEGV---SARSYTPLMKR-HLCQ 398
Query: 287 GLEQDITNQVSTGTVYVVSAFVRVDG---IVQGQVEVKATLRLQNADGSTHYN--PVGSV 451
GLE+ + + V G + + S R++ +G+ EV A ++QN H N G V
Sbjct: 399 GLEERVQHYVKRGRITLPSDRDRLEDKTPTEKGEKEV-ADNQVQNNGQLPHSNTQSKGGV 457
Query: 452 VASKEKWNKLEGSFSLT 502
+ + EG+FS T
Sbjct: 458 KLDQSRDYNKEGAFSQT 474
>gb|AAC43719.1| endoxylanase precursor
prf||2209349A endoxylanase
Length = 1348
Score = 37.7 bits (86), Expect = 0.32
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Frame = +2
Query: 260 VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVR-VDGIVQGQVEVKATLRLQNADGSTHYN 436
V+ RT+ ++G ++ G Y VS VR V + T+ ++ DG +
Sbjct: 76 VTGRTQTYEGPAYSFLGKMQKGESYNVSLKVRLVSEQNSSNPFITVTMFREDDDGKHYDT 135
Query: 437 PVGSVVASKEKWNKLEGSFSL--TNMPKNVVFYLEGPPAGVDLVIDSVTV 580
V S++ W + G+++L T K + Y+E P ++ ID V V
Sbjct: 136 IVCQKQVSEDSWTTVSGTYTLDYTGTLKTLYMYVESPDPTLEYYIDDVVV 185
Score = 37.4 bits (85), Expect = 0.42
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Frame = +2
Query: 17 RRLXXXXEGPPPGVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYA 196
+ L E P P ++ ID V ++ + VG N+I N F G
Sbjct: 163 KTLYMYVESPDPTLEYYIDDVVVT-PQNPIQVG---NVITNGTFENG------------N 206
Query: 197 ASQWSG----FLDGIRGNS--GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVR- 355
S W G + + G S G + + RT +W G D+T ++ G + V +V+
Sbjct: 207 TSGWVGTGSSVVKAVYGVSHIGGYSLLTTGRTANWNGPSYDLTAKIVPGQQHNVDFWVKF 266
Query: 356 VDGIVQGQVEVKATLRLQNADGS-THYNPVGSVVASKEKWNKLEGSFSL 499
V+G ++KAT++ + G+ N +V ++ +W +++GSF+L
Sbjct: 267 VNG--NDTEQIKATVKSTSDKGNYIRVNDFANV--NRGEWTEIKGSFTL 311
>gb|AAH61416.1| Pseudouridylate synthase 3 [Xenopus tropicalis]
ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus tropicalis]
Length = 505
Score = 36.6 bits (83), Expect = 0.71
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Frame = +2
Query: 107 SVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQ 286
++GG + I ++ + + L PWN C G ++G+ S +Y + KR Q
Sbjct: 345 AIGGLDYIPISLETGQDLVPWN--LCKPTVCDLSGGLVEGV---SARSYTPLMKR-HLCQ 398
Query: 287 GLEQDITNQVSTGTVYVVSAFVRVDG---IVQGQVEVKATLRLQNADGSTHYN--PVGSV 451
GLE+ + + V G + + S R++ +G+ EV A ++QN H N G V
Sbjct: 399 GLEERVQHYVKRGRITLPSDRDRLEDKTPTEKGEKEV-ADNQVQNNGQLPHSNTQSKGGV 457
Query: 452 VASKEKWNKLEGSFSLT 502
+ + EG+FS T
Sbjct: 458 KLDQSRDYNKEGAFSQT 474
>ref|NP_920933.1| putative 1,4-beta-xylanase [Oryza sativa (japonica cultivar-group)]
gb|AAM10753.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
gb|AAM08566.1| Putative 1,4-beta-xylanase [Oryza sativa]
gb|AAP53220.1| Glycosyl hydrolase family 10, putative [Oryza sativa (japonica
cultivar-group)]
Length = 541
Score = 36.6 bits (83), Expect = 0.71
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Frame = +2
Query: 128 IILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDIT 307
II N +F+ GL W+ R S SG +AVV +R + G
Sbjct: 9 IIQNGEFNSGLMGWSTHRDIKAGLSS---------SPSGNKFAVV-QRADSLSGAAVPSR 58
Query: 308 N-----QVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKW 472
+ Q+ T Y +SA+++V G VKA ++ N + GSV A W
Sbjct: 59 SVYQKIQLQGDTHYSLSAWLQVSA---GAAHVKAFVKTPNGERVV----AGSVSAQSGCW 111
Query: 473 NKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV------ACSRHKQSKEVKV 619
+ L+G + + +F+ P VD+ +DSV++ H+Q KV
Sbjct: 112 SMLKGGMTAYSSGPGQIFFESDAP--VDIWMDSVSLQPFTFDEWDAHRQQSAAKV 164
>ref|NP_195577.2| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
gb|AAO42885.1| At4g38650 [Arabidopsis thaliana]
Length = 562
Score = 36.6 bits (83), Expect = 0.71
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +2
Query: 302 ITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKL 481
I + ++ T+Y S +V+++ V+A LR NA N VGSV A W+ L
Sbjct: 81 ILHNLTQNTIYCFSIWVKIEAGA-ASAHVRARLRADNAT----LNCVGSVTAKHGCWSFL 135
Query: 482 EGSFSLTNMPKNVVFYLE 535
+G F L + K + + E
Sbjct: 136 KGGFLLDSPCKQSILFFE 153
>emb|CAA86406.1| xylanase [Thermotoga maritima]
sp|Q60037|XYNA_THEMA Endo-1,4-beta-xylanase A precursor (Xylanase A) (1,4-beta-D-xylan
xylanohydrolase A)
gb|AAD35155.1| endo-1,4-beta-xylanase A [Thermotoga maritima MSB8]
ref|NP_227877.1| endo-1,4-beta-xylanase A [Thermotoga maritima MSB8]
Length = 1059
Score = 36.6 bits (83), Expect = 0.71
Identities = 31/108 (28%), Positives = 45/108 (41%)
Frame = +2
Query: 242 GENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNADG 421
GE V RT W G+E D+T +V +G Y++S V V A R ++ G
Sbjct: 83 GEYSLKVENRTSPWDGVEIDLTGKVKSGADYLLSFQVYQSSDAPQLFNVVA--RTEDEKG 140
Query: 422 STHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVI 565
Y+ + V + W ++ FS T EG PA L+I
Sbjct: 141 E-RYDVILDKVVVSDHWKEILVPFSPT---------FEGTPAKYSLII 178
>ref|ZP_00525276.1| Endo-1,4-beta-xylanase [Solibacter usitatus Ellin6076]
gb|EAM55701.1| Endo-1,4-beta-xylanase [Solibacter usitatus Ellin6076]
Length = 785
Score = 36.6 bits (83), Expect = 0.71
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Frame = +2
Query: 236 NSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKATLRLQNA 415
++G + + RT +QG ++TN + G+ YVVS + + + G+ + + LQ
Sbjct: 217 HTGTFSLLTTGRTAAFQGPAINVTNIMFNGSRYVVSVWAK---LAPGEPTSQLRVSLQRN 273
Query: 416 DGS--THYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAGVDLVIDSVTV 580
GS T + VG+ + W L ++ +V Y+E ID ++
Sbjct: 274 IGSMTTFHTVVGNTQVTSGAWVHLSTTYDFALANSSVTLYVESASGTSSFYIDDASI 330
>gb|AAB87371.1| xylanase [Caldicellulosiruptor saccharolyticus]
Length = 1347
Score = 35.8 bits (81), Expect = 1.2
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Frame = +2
Query: 224 GIRGNSGENYAVVSK----------RTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQ 373
G +G G VVS+ RT G++Q++T +V G Y A RV +
Sbjct: 390 GWKGREGAKLEVVSEGNKNIIHVYNRTGPRSGIQQNLTGRVEKGKKY--KAVFRVKYVKG 447
Query: 374 GQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAG- 550
+ ++G Y + A+K +W + G+F+++ + V +++ P
Sbjct: 448 PDTKEFILAAKITSNGKESYQELIKGFANKNEWTSISGTFTISQDIETVYLFIQTPVTEK 507
Query: 551 -------VDLVIDSVTV--ACSRHKQSKEV 613
VD ++ V+V K+S+EV
Sbjct: 508 PDKNNDLVDYFVEYVSVKEVLVTQKESEEV 537
>ref|ZP_00884869.1| Cellulose binding, type IV [Caldicellulosiruptor saccharolyticus
DSM 8903]
gb|EAP43334.1| Cellulose binding, type IV [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 1347
Score = 35.8 bits (81), Expect = 1.2
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Frame = +2
Query: 224 GIRGNSGENYAVVSK----------RTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQ 373
G +G G VVS+ RT G++Q++T +V G Y A RV +
Sbjct: 390 GWKGREGAKLEVVSEGNKNIIHVYNRTGPRSGIQQNLTGRVEKGKKY--KAVFRVKYVKG 447
Query: 374 GQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYLEGPPAG- 550
+ ++G Y + A+K +W + G+F+++ + V +++ P
Sbjct: 448 PDTKEFILAAKITSNGKESYQELIKGFANKNEWTSISGTFTISQDIETVYLFIQTPVTEK 507
Query: 551 -------VDLVIDSVTV--ACSRHKQSKEV 613
VD ++ V+V K+S+EV
Sbjct: 508 PDKNNDLVDYFVEYVSVKEVLVTQKESEEV 537
>emb|CAD48314.1| celloxylanase CelX [Clostridium stercorarium]
Length = 1032
Score = 35.0 bits (79), Expect = 2.1
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Frame = +2
Query: 221 DGIRGNSGENYAV-VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKAT 397
D G Y++ V R + W G + V G Y V+ +VR+ I +++ +
Sbjct: 222 DEANHTDGGRYSLKVGGRNDTWHGPALGVEKYVDQGYEYKVAVYVRL--ISPESAQLQLS 279
Query: 398 LRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKN-VVFYLEGP 541
++ +++ N VA + W LEG++ N+ + Y+E P
Sbjct: 280 TQIGEGTSASYVNLAKKNVAISDGWVLLEGTYRYDNLGGGYLTIYVESP 328
>sp|Q03745|CR1EB_BACTA Pesticidal crystal protein cry1Eb (Insecticidal delta-endotoxin
CryIE(b)) (Crystaline entomocidal protoxin) (134 kDa
crystal protein)
gb|AAA22346.1| cryIE(b)
Length = 1174
Score = 34.7 bits (78), Expect = 2.7
Identities = 29/113 (25%), Positives = 49/113 (43%)
Frame = +2
Query: 50 PGVDLLIDSVTISYKKTASSVGGTENIILNYDFSKGLHPWNPIRCHAYAASQWSGFLDGI 229
PG++++I + TA S+ N+I N DF+ GL WN G +D +
Sbjct: 942 PGINVVIFEELENRISTALSLYDARNVIKNGDFNNGLSCWNV-----------KGHVDVV 990
Query: 230 RGNSGENYAVVSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEV 388
N+ + VV + W+ E T +V G Y++ +G +G V +
Sbjct: 991 EQNNHRSVLVVPE----WEA-EVSQTIRVCPGRGYILRVTAYKEGYGEGCVTI 1038
>dbj|BAA82143.1| xylanase C [Clostridium stercorarium]
Length = 1031
Score = 34.7 bits (78), Expect = 2.7
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Frame = +2
Query: 221 DGIRGNSGENYAV-VSKRTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQGQVEVKAT 397
D G Y++ V R + W G + V G Y V+ +VR+ I +++ +
Sbjct: 222 DEANHTDGGRYSLKVGGRNDTWHGPALRVEKYVDQGYEYKVAVYVRL--ISPESAQLQLS 279
Query: 398 LRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKN-VVFYLEGP 541
++ +++ N VA + W LEG++ N+ + Y+E P
Sbjct: 280 TQIGEGTSASYVNLAKKNVAISDGWVLLEGTYRYDNLGGGYLTIYVESP 328
>emb|CAE13637.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
ref|NP_928648.1| hypothetical protein plu1344 [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 4070
Score = 33.1 bits (74), Expect = 7.9
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +2
Query: 92 KKTASSVGGTENIILNYDFSKGLHPWNPIR-CHAYAASQWSGFLDGIRGNSGENYAVVSK 268
+KT S EN+I+N DF +G W AY + G LD + V K
Sbjct: 1422 QKTLSVSDQDENLIVNGDFEQGELGWQSTHGIEAYNPASDYG-LDNTGDGERVSKFDVDK 1480
Query: 269 RTEHWQGLEQDITNQVSTGTVYVVSAFVRVDGIVQG 376
T WQ L+ +V + T +S F RVD + G
Sbjct: 1481 NTVIWQELQNLSEGEVVSLTFDFMSHFERVDRDLSG 1516
>dbj|BAC45001.1| xylanase 5 [Paenibacillus sp. W-61]
Length = 1326
Score = 33.1 bits (74), Expect = 7.9
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Frame = +2
Query: 218 LDGIRGNSGENYAVVSKRTEHWQGLEQ---------------DITNQVSTGTVYVVSAFV 352
LDG + +G +S+ H +Q D T +++ Y +SA+V
Sbjct: 218 LDGFKARNGRETVALSQEANHTPDGKQSLLVTTTAQYDAALVDATGKMAKNHEYELSAWV 277
Query: 353 RVDGIVQGQVEVKATLRLQNADGSTHYNPVGSVVASKEKWNKLEGSFSLTNMPKNVVFYL 532
++ G+ + +Q A+ S + N + + + W L G ++LT P + Y+
Sbjct: 278 KM---APGEAPTTLRISVQYAE-SGYANVSQNATVTNQDWVHLTGKYTLTTTPSVLNAYI 333
Query: 533 E 535
E
Sbjct: 334 E 334
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,355,753,349
Number of Sequences: 3454138
Number of extensions: 28053119
Number of successful extensions: 73647
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 71152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73570
length of database: 1,185,965,366
effective HSP length: 124
effective length of database: 757,652,254
effective search space used: 65915746098
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)