BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_467790.1| DNA binding protein-like [Oryza sativa (ja... 130 7e-29
ref|NP_921387.1| hypothetical protein similar to putative D... 104 4e-21
ref|NP_849712.1| transcription regulator [Arabidopsis thali... 91 6e-17
gb|ABB47567.1| BT004686 At1g26948 [Oryza sativa (japonica c... 81 4e-14
ref|NP_974372.1| transcription regulator [Arabidopsis thali... 77 9e-13
ref|NP_198802.1| DNA binding / transcription factor [Arabid... 76 1e-12
ref|XP_474070.1| OSJNBb0079B02.12 [Oryza sativa (japonica c... 75 3e-12
gb|AAM67002.1| DNA-binding protein-like [Arabidopsis thaliana] 74 5e-12
ref|NP_197020.1| DNA binding / transcription factor [Arabid... 74 8e-12
ref|NP_177590.1| DNA binding / transcription factor [Arabid... 70 7e-11
emb|CAB41854.1| hypothetical protein [Arabidopsis thaliana] 66 2e-09
ref|NP_190355.2| DNA binding / transcription factor [Arabid... 66 2e-09
gb|ABD32218.1| Helix-loop-helix DNA-binding [Medicago trunc... 60 7e-08
gb|ABA94608.1| expressed protein [Oryza sativa (japonica cu... 55 2e-06
gb|AAS88824.2| unknown protein [Oryza sativa (japonica cult... 36 1.8
emb|CAA22432.1| SPBC29A10.04 [Schizosaccharomyces pombe] >g... 35 3.0
ref|ZP_00577010.1| conserved hypothetical protein [Sphingop... 35 4.0
>ref|XP_467790.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
dbj|BAD16450.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
Length = 88
Score = 130 bits (326), Expect = 7e-29
Identities = 64/72 (88%), Positives = 71/72 (98%)
Frame = -1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
INELIS+LQ+LLP++RRRG SQASTTKLLKETC+YIKSLHREVDDLSDRLSDLMA+MDHN
Sbjct: 16 INELISKLQSLLPNSRRRGSSQASTTKLLKETCNYIKSLHREVDDLSDRLSDLMATMDHN 75
Query: 534 SPGAEIIRSLLR 499
SPGAEIIRS+LR
Sbjct: 76 SPGAEIIRSILR 87
>ref|NP_921387.1| hypothetical protein similar to putative DNA binding proteins
[Oryza sativa (japonica cultivar-group)]
gb|AAM74282.1| Hypothetical protein similar to putative DNA binding proteins
[Oryza sativa (japonica cultivar-group)]
gb|AAP53674.1| hypothetical protein LOC_Os10g26410 [Oryza sativa (japonica
cultivar-group)]
Length = 88
Score = 104 bits (259), Expect = 4e-21
Identities = 57/74 (77%), Positives = 66/74 (89%), Gaps = 2/74 (2%)
Frame = -1
Query: 714 INELISRLQTLLP-SARRRGG-SQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
INELIS+LQ+LLP S+RRRG S++ TKLLKE CSYIKSLHREVDDLS+RLS+LMA+MD
Sbjct: 15 INELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMATMD 74
Query: 540 HNSPGAEIIRSLLR 499
NSP A+IIRSLLR
Sbjct: 75 SNSPQADIIRSLLR 88
>ref|NP_849712.1| transcription regulator [Arabidopsis thaliana]
gb|AAO42932.1| At1g26948 [Arabidopsis thaliana]
dbj|BAC43682.1| unknown protein [Arabidopsis thaliana]
Length = 94
Score = 90.5 bits (223), Expect = 6e-17
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = -1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I++L+S+LQ L+P RRR + S +K+L+ETC+YI++LHREVDDLSDRLS+L+AS D N
Sbjct: 22 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 81
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 82 SAEAAIIRSLL 92
>gb|ABB47567.1| BT004686 At1g26948 [Oryza sativa (japonica cultivar-group)]
Length = 91
Score = 81.3 bits (199), Expect = 4e-14
Identities = 38/71 (53%), Positives = 55/71 (77%)
Frame = -1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I +L+S+LQ LLP AR R + + ++L+ETCSYI+SLHREVDDLS+RL++L+A+ D +
Sbjct: 20 IGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHREVDDLSERLAELLAAADVS 79
Query: 534 SPGAEIIRSLL 502
+ A +IR LL
Sbjct: 80 TAQAAVIRGLL 90
>ref|NP_974372.1| transcription regulator [Arabidopsis thaliana]
gb|ABD57465.1| At3g28857 [Arabidopsis thaliana]
dbj|BAB02128.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 76.6 bits (187), Expect = 9e-13
Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = -1
Query: 708 ELISRLQTLLPSAR-RRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNS 532
+L+S+L+ LP RR + S +K+L+ETC+YI+ LHREVD+LSDRLS L+ S+D +S
Sbjct: 22 DLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDS 81
Query: 531 PGAEIIRSLL 502
P A +IRSLL
Sbjct: 82 PEAAVIRSLL 91
>ref|NP_198802.1| DNA binding / transcription factor [Arabidopsis thaliana]
gb|AAM65786.1| DNA-binding protein-like [Arabidopsis thaliana]
dbj|BAB10210.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 76.3 bits (186), Expect = 1e-12
Identities = 37/70 (52%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = -1
Query: 708 ELISRLQTLLPS-ARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNS 532
+L+S+L+ +LP +RR +AS +K+L+ETC+YI++L+REVD+LS+RLS L+ S+D +S
Sbjct: 22 DLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDS 81
Query: 531 PGAEIIRSLL 502
P A +IRSLL
Sbjct: 82 PEAAVIRSLL 91
>ref|XP_474070.1| OSJNBb0079B02.12 [Oryza sativa (japonica cultivar-group)]
emb|CAE05966.1| OSJNBa0063C18.7 [Oryza sativa (japonica cultivar-group)]
emb|CAD41853.2| OSJNBb0079B02.12 [Oryza sativa (japonica cultivar-group)]
emb|CAC09463.1| putative DNA binding protein [Oryza sativa (indica cultivar-group)]
Length = 104
Score = 75.1 bits (183), Expect = 3e-12
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = -1
Query: 714 INELISRLQTLLPSARRRGGS-QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDH 538
I EL+S+LQ LLP ++ R G+ + S ++L+ETCSYI+SLH+EVD+LS+ L+ L+AS D
Sbjct: 32 IAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNLSETLAQLLASPDV 91
Query: 537 NSPGAEIIRSLL 502
S A +IRSLL
Sbjct: 92 TSDQAAVIRSLL 103
>gb|AAM67002.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 74.3 bits (181), Expect = 5e-12
Identities = 37/70 (52%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = -1
Query: 708 ELISRLQTLLPSAR-RRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNS 532
+L+S+L+ LP RR + S + +L+ETC+YI+ LHREVD+LSDRLS L+ S+D +S
Sbjct: 22 DLVSKLRQFLPEIHERRRSDKVSASXVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDS 81
Query: 531 PGAEIIRSLL 502
P A +IRSLL
Sbjct: 82 PEAAVIRSLL 91
>ref|NP_197020.1| DNA binding / transcription factor [Arabidopsis thaliana]
emb|CAB89326.1| putative protein [Arabidopsis thaliana]
gb|AAO63880.1| putative bHLH protein [Arabidopsis thaliana]
dbj|BAC43472.1| unknown protein [Arabidopsis thaliana]
Length = 94
Score = 73.6 bits (179), Expect = 8e-12
Identities = 36/72 (50%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = -1
Query: 714 INELISRLQTLLPSARR-RGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDH 538
I +LIS+L+ +P R+ R + S +K+L+ETC+YI++L++E DDLSDRL+ L+ S+D
Sbjct: 21 ITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDP 80
Query: 537 NSPGAEIIRSLL 502
NSP A +IRSL+
Sbjct: 81 NSPQAAVIRSLI 92
>ref|NP_177590.1| DNA binding / transcription factor [Arabidopsis thaliana]
gb|AAM65825.1| putative DNA-binding protein [Arabidopsis thaliana]
gb|AAG52350.1| putative DNA-binding protein; 54988-54618 [Arabidopsis thaliana]
gb|AAO23611.1| At1g74500 [Arabidopsis thaliana]
Length = 93
Score = 70.5 bits (171), Expect = 7e-11
Identities = 38/72 (52%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -1
Query: 714 INELISRLQTLLPSAR-RRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDH 538
IN+LI +LQ LLP R R + S ++L++TC+YI++LHREVDDLS+RLS+L+A+ D
Sbjct: 22 INDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD- 80
Query: 537 NSPGAEIIRSLL 502
+ A +IRSLL
Sbjct: 81 -TAQAALIRSLL 91
>emb|CAB41854.1| hypothetical protein [Arabidopsis thaliana]
Length = 78
Score = 65.9 bits (159), Expect = 2e-09
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = -1
Query: 714 INELISRLQTLLPS-ARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDH 538
IN+L+ +L LLP A R + S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 7 INDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD- 65
Query: 537 NSPGAEIIRSLL 502
S A +IRSLL
Sbjct: 66 -SAQAALIRSLL 76
>ref|NP_190355.2| DNA binding / transcription factor [Arabidopsis thaliana]
Length = 92
Score = 65.9 bits (159), Expect = 2e-09
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = -1
Query: 714 INELISRLQTLLPS-ARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDH 538
IN+L+ +L LLP A R + S +++L+ETCSYI++L +EVDDLS+RLS L+ S D
Sbjct: 21 INDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD- 79
Query: 537 NSPGAEIIRSLL 502
S A +IRSLL
Sbjct: 80 -SAQAALIRSLL 90
>gb|ABD32218.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 53
Score = 60.5 bits (145), Expect = 7e-08
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = -1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
Q +K+L+ETC+YI++L REVDDLS RLS L+A++D +S A IIRSLL
Sbjct: 2 QVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 51
>gb|ABA94608.1| expressed protein [Oryza sativa (japonica cultivar-group)]
Length = 101
Score = 55.5 bits (132), Expect = 2e-06
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 9/78 (11%)
Frame = -1
Query: 708 ELISRLQTLLPSARRRGGS----QASTTKLLKETCSYIKSLHREVDDLSDRLSD--LMAS 547
ELIS+LQ +LP+ RGG QAS+ ++L+E C YI+ LHRE D LS+RL++ L+
Sbjct: 26 ELISKLQAVLPT---RGGEANAKQASSAEVLQEACRYIRRLHREADALSERLAELLLLQP 82
Query: 546 MDHNSPGAEI---IRSLL 502
D GA++ IRSLL
Sbjct: 83 SDLAINGADVPDLIRSLL 100
>gb|AAS88824.2| unknown protein [Oryza sativa (japonica cultivar-group)]
gb|AAW56931.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 339
Score = 35.8 bits (81), Expect = 1.8
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = -1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I+E + LQ+L+P + G +L E SY++SL +V+ LS +L+ L M
Sbjct: 202 ISERMKMLQSLVPGCDKVTGKAL----MLDEIISYVQSLQNQVEFLSMKLASLSPLMYEF 257
Query: 534 SPGAEIIRSLLR 499
PG ++ +LR
Sbjct: 258 GPGIDMHPDVLR 269
>emb|CAA22432.1| SPBC29A10.04 [Schizosaccharomyces pombe]
ref|NP_596049.1| hypothetical protein SPBC29A10.04 [Schizosaccharomyces pombe 972h-]
sp|O94383|SMC1_SCHPO Structural maintenance of chromosome 1 (Cohesin complex subunit
psm1) (Chromosome segregation protein smc1)
Length = 1233
Score = 35.0 bits (79), Expect = 3.0
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -1
Query: 711 NELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNS 532
+ L+ +LQTL + + S+ S T ++ + S IKSLH V L +DL+A ++
Sbjct: 395 SNLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSLDTERADLLAKINEKI 454
Query: 531 PGAEI 517
E+
Sbjct: 455 ESLEL 459
>ref|ZP_00577010.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
gb|EAN48019.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
Length = 317
Score = 34.7 bits (78), Expect = 4.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +1
Query: 322 LGYIQLLYAWVHTHTRQCAEIWR--WREA----GRRPWMERDSARADAAYMRRAWPAGRT 483
LG +L+A VH ++W W+ R P D +RA +A ++ W AGRT
Sbjct: 252 LGSFNILWAAVHEWVGIAKDVWHAPWKHKLDYIWREPGWSHDGSRATSAMIKERWAAGRT 311
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,165,163,651
Number of Sequences: 3454138
Number of extensions: 19657828
Number of successful extensions: 58457
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 56836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58425
length of database: 1,185,965,366
effective HSP length: 127
effective length of database: 747,289,840
effective search space used: 96400389360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)