BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_473307.1| OSJNBb0020O11.16 [Oryza sativa (japonica c... 71 2e-17
ref|NP_565064.1| calcium ion binding [Arabidopsis thaliana]... 51 4e-07
ref|NP_191925.1| unknown protein [Arabidopsis thaliana] >gi... 47 3e-04
ref|NP_859016.1| keratin associated protein 10-10 [Homo sap... 33 5.2
emb|CAF27663.1| Nitrogenase cofactor synthesis protein nifS... 33 6.8
>ref|XP_473307.1| OSJNBb0020O11.16 [Oryza sativa (japonica cultivar-group)]
emb|CAD41515.3| OSJNBb0020O11.16 [Oryza sativa (japonica cultivar-group)]
Length = 288
Score = 70.9 bits (172), Expect(2) = 2e-17
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKGY WD ERMAT++DFIWTDSEISKM+ CFDSD D K
Sbjct: 226 GKGYITPWDLERMATVHDFIWTDSEISKMIHCFDSDRDGK 265
Score = 40.8 bits (94), Expect(2) = 2e-17
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -2
Query: 385 INLEDFRSIVSQCNMLQEHEK*G 317
INLEDFR+IVS+CNMLQE EK G
Sbjct: 266 INLEDFRTIVSRCNMLQEPEKSG 288
>ref|NP_565064.1| calcium ion binding [Arabidopsis thaliana]
gb|AAG40381.1| At1g73440 [Arabidopsis thaliana]
gb|AAG30974.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 51.2 bits (121), Expect(2) = 4e-07
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKG+ D +MAT++DF WT+ E+ M+RCFD D D K
Sbjct: 196 GKGFITLRDVAKMATVHDFTWTEEELQDMIRCFDMDKDGK 235
Score = 25.4 bits (54), Expect(2) = 4e-07
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -2
Query: 385 INLEDFRSIVSQCNMLQ 335
++L++FR IVS+C ML+
Sbjct: 236 LSLDEFRKIVSRCRMLK 252
>ref|NP_191925.1| unknown protein [Arabidopsis thaliana]
emb|CAB80772.1| hypothetical protein [Arabidopsis thaliana]
gb|AAC19311.1| contains similarity to EF-hand calcium-binding domain (Pfam:
efhand.hmm, score; 16.10) [Arabidopsis thaliana]
Length = 257
Score = 47.4 bits (111), Expect = 3e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1
Query: 500 GKGYXXXWDXERMATINDFIWTDSEISKMVRCFDSDGDDK 381
GKG+ D +MAT++DF WT+ E+ M+R FD D D K
Sbjct: 93 GKGFITRRDVAKMATVHDFTWTEEELQDMIRSFDMDKDGK 132
>ref|NP_859016.1| keratin associated protein 10-10 [Homo sapiens]
emb|CAD97467.1| keratin associated protein KAP10.10 [Homo sapiens]
dbj|BAD01545.1| keratin associated protein [Homo sapiens]
sp|P60014|KR10A_HUMAN Keratin-associated protein 10-10 (Keratin-associated protein 10.10)
(High sulfur keratin-associated protein 10.10)
(Keratin-associated protein 18-10) (Keratin-associated
protein 18.10)
Length = 251
Score = 33.1 bits (74), Expect = 5.2
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 205 LCSMALCPLLSQQC*CNFTG*AMQN*STSICRPATLVILTSH--APATCCIEIQCCGNPR 378
+C + +C S C C + + S CRP++ V L H +TCC+ + CG
Sbjct: 155 VCYVPVCSGASTSC-CQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASA 213
Query: 379 GLSSPSLSKQRTILDI 426
PS + + + +
Sbjct: 214 SSCQPSCCRTASCVSL 229
>emb|CAF27663.1| Nitrogenase cofactor synthesis protein nifS [Bartonella henselae
str. Houston-1]
ref|YP_033669.1| Nitrogenase cofactor synthesis protein nifS [Bartonella henselae
str. Houston-1]
Length = 384
Score = 32.7 bits (73), Expect = 6.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 204 VMFNGSMSATIPTVLMQFHRLGHAKLEYKHLQTSNTRHP 320
V+F S T+L F+ +G +K+++ HL T HP
Sbjct: 66 VVFTSGASEAAMTLLTPFYNMGSSKVQFSHLYIGATEHP 104
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 997,598,836
Number of Sequences: 3454138
Number of extensions: 18616030
Number of successful extensions: 43632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43627
length of database: 1,185,965,366
effective HSP length: 122
effective length of database: 764,560,530
effective search space used: 43579950210
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)