BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_467805.1| putative SEC6 [Oryza sativa (japonica cult... 283 3e-75
ref|NP_565026.1| unknown protein [Arabidopsis thaliana] >gi... 252 1e-65
gb|AAF43235.1| EST gb|AA712174 comes from this gene. [Arabi... 252 1e-65
gb|AAL87122.1| SEC6 [Arabidopsis thaliana] 252 1e-65
ref|XP_629106.1| hypothetical protein DDB0219867 [Dictyoste... 52 2e-05
ref|XP_656804.1| Sec6 protein [Entamoeba histolytica HM-1:I... 49 2e-04
emb|CAG60791.1| unnamed protein product [Candida glabrata C... 40 0.064
emb|CAC84363.1| hypothetical protein [Saimiriine herpesviru... 36 1.2
ref|NP_040268.1| unnamed protein product [Saimiriine herpes... 36 1.6
gb|EAR99845.1| hypothetical protein TTHERM_00660270 [Tetrah... 35 2.0
ref|ZP_01153717.1| Phosphoesterase, RecJ-like:DHHA2 [Methan... 35 2.0
emb|CAG13175.1| unnamed protein product [Tetraodon nigrovir... 35 2.7
gb|AAO22907.1| adventurous gliding motility protein K [Myxo... 35 3.5
ref|XP_502576.1| hypothetical protein [Yarrowia lipolytica]... 34 4.6
gb|EAS07592.1| hypothetical protein TTHERM_00678580 [Tetrah... 34 5.9
ref|NP_048037.1| orf 66 [Ateline herpesvirus 3] >gi|4019292... 34 5.9
gb|AAX20126.1| tripartite motif protein L-TRIM [Lymnaea sta... 33 7.8
>ref|XP_467805.1| putative SEC6 [Oryza sativa (japonica cultivar-group)]
dbj|BAD15629.1| putative SEC6 [Oryza sativa (japonica cultivar-group)]
Length = 637
Score = 283 bits (725), Expect = 3e-75
Identities = 139/152 (91%), Positives = 147/152 (96%)
Frame = -3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+E+TIVVYVDHLL+QK +IKEETIERMRLDEEVLMDFFREHINVTKVE+RVRILAD
Sbjct: 486 VEACLEQTIVVYVDHLLTQKGHIKEETIERMRLDEEVLMDFFREHINVTKVETRVRILAD 545
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLDSFTLIYTNILEHQPDCPPEV KLV MREGIP+KEAKEVVQECKEIYEN
Sbjct: 546 LRELASAESLDSFTLIYTNILEHQPDCPPEVVEKLVGMREGIPRKEAKEVVQECKEIYEN 605
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKGIWRKLGQ 237
SLVDGNPQKSGFVFGKLKCLTA+KGIW KLGQ
Sbjct: 606 SLVDGNPQKSGFVFGKLKCLTARKGIWSKLGQ 637
>ref|NP_565026.1| unknown protein [Arabidopsis thaliana]
gb|AAM91753.1| unknown protein [Arabidopsis thaliana]
gb|AAK76688.1| unknown protein [Arabidopsis thaliana]
Length = 752
Score = 252 bits (643), Expect = 1e-65
Identities = 120/151 (79%), Positives = 142/151 (94%), Gaps = 1/151 (0%)
Frame = -3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 601 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 660
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 661 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 720
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG-IWRKL 243
+LVDGNP K+GFVF ++KCLTA KG +WRKL
Sbjct: 721 TLVDGNPPKTGFVFPRVKCLTASKGSMWRKL 751
>gb|AAF43235.1| EST gb|AA712174 comes from this gene. [Arabidopsis thaliana]
Length = 739
Score = 252 bits (643), Expect = 1e-65
Identities = 120/151 (79%), Positives = 142/151 (94%), Gaps = 1/151 (0%)
Frame = -3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 588 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 647
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 648 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 707
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG-IWRKL 243
+LVDGNP K+GFVF ++KCLTA KG +WRKL
Sbjct: 708 TLVDGNPPKTGFVFPRVKCLTASKGSMWRKL 738
>gb|AAL87122.1| SEC6 [Arabidopsis thaliana]
Length = 751
Score = 252 bits (643), Expect = 1e-65
Identities = 120/151 (79%), Positives = 142/151 (94%), Gaps = 1/151 (0%)
Frame = -3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 600 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 659
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 660 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 719
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG-IWRKL 243
+LVDGNP K+GFVF ++KCLTA KG +WRKL
Sbjct: 720 TLVDGNPPKTGFVFPRVKCLTASKGSMWRKL 750
>ref|XP_629106.1| hypothetical protein DDB0219867 [Dictyostelium discoideum]
gb|EAL60695.1| hypothetical protein DDB0219867 [Dictyostelium discoideum]
Length = 783
Score = 52.4 bits (124), Expect = 2e-05
Identities = 31/122 (25%), Positives = 64/122 (52%)
Frame = -3
Query: 647 LLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILADMRELASAESLDSFTL 468
L+ KN E T + + D + L+DFF++++ ++ V ++V+IL D +++ ++ S+D +
Sbjct: 655 LIGGKNKFNENTYKILSNDCDKLLDFFKKYLRLSVVTAKVQILEDFKQMITS-SIDMVPV 713
Query: 467 IYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYENSLVDGNPQKSGFVFG 288
+ +++ D V ++ R I K E EV+ + K I E D +G +F
Sbjct: 714 YFRSVINFHKDINERVVELVLYQRTDISKSEITEVLGQIKTIVETVHTDPTNPPTG-IFS 772
Query: 287 KL 282
++
Sbjct: 773 RM 774
>ref|XP_656804.1| Sec6 protein [Entamoeba histolytica HM-1:IMSS]
gb|EAL51418.1| Sec6 protein, putative [Entamoeba histolytica HM-1:IMSS]
Length = 766
Score = 48.5 bits (114), Expect = 2e-04
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Frame = -3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEE----TIERMRLDEEVLMDFFREHINVTKVESRVR 525
V+ C+ + I Y+ L+++K+ + T + + D E + F ++ +N K+ +
Sbjct: 616 VDKCVVDLINKYITQLITKKHKFNRKDRTNTGDMIAKDSETINSFLQDFVNKKKLMGHLN 675
Query: 524 ILADMRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKE 345
+L +L E+ DS Y IL+ DCP E+ L++ R+ + + +
Sbjct: 676 VLRGFSQLLKEEA-DSVRSGYNIILQDYKDCPVEIVRFLISERDDFGSSDKDTAYEGLQN 734
Query: 344 IYENSLVD 321
+Y+ VD
Sbjct: 735 VYDQLNVD 742
>emb|CAG60791.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_447842.1| unnamed protein product [Candida glabrata]
Length = 813
Score = 40.4 bits (93), Expect = 0.064
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Frame = -3
Query: 692 VEACIEETIVVYV-----DHLLSQKNYIKEETIERMRLDEEVLMDFFREHIN-----VTK 543
+E IE TI+ Y+ +H + KN + +E ++ D E+ F +I +
Sbjct: 653 MERLIENTILGYIGALKYEHSIKNKN---NKFLESVKRDFEIFYKLFATYIGSSDETIEI 709
Query: 542 VESRVRILADMRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEV 363
V+ + ++ +L E +DS I+ N L+ PD P + ++ R+ I + K++
Sbjct: 710 VKEKFEVMDYFMDLC-CEPIDSVMGIWDNFLQRYPDVPVVILEFVLKSRKDIDRSRRKKL 768
Query: 362 VQECKEI 342
VQ ++
Sbjct: 769 VQRAIDL 775
>emb|CAC84363.1| hypothetical protein [Saimiriine herpesvirus 2]
Length = 435
Score = 36.2 bits (82), Expect = 1.2
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = +3
Query: 231 HLLPKLPPYAFLCCQALQFAKHKTGLL----RVAIHKRVLVYLFAFLYNLLGFLFWNAFP 398
H LP P + C +F G++ R +HK L+ L L+ + W FP
Sbjct: 57 HCLPSWPYFLDRCSTISEFLSFWCGIVWDTRRTQVHKSKLIKLTQCLFRAYIVVVWVVFP 116
Query: 399 HCHKLIKNLRRAIRLMFQYISVNESKAI 482
C K + + ++YI++ KAI
Sbjct: 117 KCRSDFKPKKFLENVWYKYINMPFYKAI 144
>ref|NP_040268.1| unnamed protein product [Saimiriine herpesvirus 2]
emb|CAA45689.1| unnamed protein product [Saimiriine herpesvirus 2]
sp|Q01046|UL49_SHV21 Gene 66 protein
pir||A36813 hypothetical protein ORF66 - saimiriine herpesvirus 1 (strain 11)
gb|AAA46142.1| first methionine codon in the ECLF6 ORF
Length = 435
Score = 35.8 bits (81), Expect = 1.6
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +3
Query: 231 HLLPKLPPYAFLCCQALQFAKHKTGLL----RVAIHKRVLVYLFAFLYNLLGFLFWNAFP 398
H LP P + C +F G++ R +HK L+ L L+ + W FP
Sbjct: 57 HCLPSWPYFLDRCSTISEFLSFWCGIVWDTRRTQVHKFKLIKLTQCLFRAYIVVVWVVFP 116
Query: 399 HCHKLIKNLRRAIRLMFQYISVNESKAIQT 488
C K + + ++YI++ KAI T
Sbjct: 117 KCRLDFKPKKFLENVWYKYINMPFYKAIVT 146
>gb|EAR99845.1| hypothetical protein TTHERM_00660270 [Tetrahymena thermophila
SB210]
Length = 483
Score = 35.4 bits (80), Expect = 2.0
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = -3
Query: 626 IKEETIERMRLDEEVLMDFFR---------EHINVTKVESRVRILADMRELASAESLDSF 474
+K + ++ M L ++ L +FFR +HIN VES +++ + ++L +D+F
Sbjct: 70 LKAKALQYMPLFQDHLKEFFRKFLENCVENDHINFMTVESITKLVTEKQDLIGNFPVDTF 129
Query: 473 TLIYTNILEHQPDCPPEVFYKLVAM 399
I T I P P F + + +
Sbjct: 130 VFINTQIDILGPQLEPNQFIEFLRL 154
>ref|ZP_01153717.1| Phosphoesterase, RecJ-like:DHHA2 [Methanosaeta thermophila PT]
gb|EAR49290.1| Phosphoesterase, RecJ-like:DHHA2 [Methanosaeta thermophila PT]
Length = 311
Score = 35.4 bits (80), Expect = 2.0
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Frame = -3
Query: 647 LLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVE---------SRVRILADMRELAS 495
+L K+ IK +T + + + DF V ++E R ILA+MR+
Sbjct: 184 MLKAKSDIKSKTAKDILFGDFKKFDFSGVKAGVGQIEVMDLADLAPKREEILAEMRKALE 243
Query: 494 AESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYENSLVDGN 315
+E LD L+ T++++ D +F A +EG K +V IY+ ++
Sbjct: 244 SEKLDMIVLMLTDVIKEASDL---LFVGTAAAKEGFEKAFGGKVTN--NSIYKEKVLSRK 298
Query: 314 PQ 309
Q
Sbjct: 299 KQ 300
>emb|CAG13175.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 35.0 bits (79), Expect = 2.7
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -3
Query: 701 YAGVEACIEETIVVYVDHLLSQKNYIKEETIERMRL--DEEVLMDFFREHINVTKVESRV 528
Y+G +A + + + H+L +KN E ER RL D + D + H+ VT +V
Sbjct: 81 YSGTKAALAGGTTMVIGHVLPEKNESLLEAFERYRLAADAKSCCD-YALHVGVTWWGPKV 139
Query: 527 RILADMRELASAESLDSFTL 468
R A+M +L E ++SF +
Sbjct: 140 R--AEMEKLVREEGVNSFQM 157
>gb|AAO22907.1| adventurous gliding motility protein K [Myxococcus xanthus]
Length = 2516
Score = 34.7 bits (78), Expect = 3.5
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 557 INVTKVESRVRILADMRELASAESLDSFTLI--YTNILEHQPDCPPEVFYKLVAMREGIP 384
+ V + E+R ++ ++ +A E D + I +TN L+ QPD P + V +RE
Sbjct: 1940 VGVLEGEARAKVCLELGRIARDELHDPYMAIDAFTNALKSQPDAPEVMDQLYVLLRETRQ 1999
Query: 383 KKEAKEVVQECKEIYENSLVDGNPQKSGFVFGKLK 279
++A +V+ + L ++ F G+L+
Sbjct: 2000 GQKAADVLARMLALPALGLEPHKAKRVWFALGELR 2034
>ref|XP_502576.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG80764.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 807
Score = 34.3 bits (77), Expect = 4.6
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Frame = -3
Query: 680 IEETIVVYVDHLLSQKNYIKEETIER----MRLDEEVLMDFFREHINVTKVESRVRILAD 513
++ET++ Y+ L S K++ + + ++ D + DFF EH + + +V + +
Sbjct: 669 LDETVLHYLQSLRSGKHHKVSLKLPKASVQIKQDIGKMYDFFDEHHSSREHVQQVFKVFE 728
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
++ YT + DCP F +V R+ I K AKE++ +
Sbjct: 729 HLLWILESPIEELGDKYTQLKAEFWDCPLSFFEAVVNARKDIDSKMAKELI---SVVRSE 785
Query: 332 SLVDGNPQK 306
+L+ G P++
Sbjct: 786 ALLGGGPEE 794
>gb|EAS07592.1| hypothetical protein TTHERM_00678580 [Tetrahymena thermophila
SB210]
Length = 726
Score = 33.9 bits (76), Expect = 5.9
Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = -3
Query: 674 ETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILADMRELAS 495
E ++ + + SQ+ K++ +E+ + E +D + + K+ +++ I+ + ++AS
Sbjct: 56 EELIEFEEQAQSQEKSKKQKFLEKFNIQETNEVDEQSQAKRLAKIPNKINIIQNQSQIAS 115
Query: 494 AESL----DSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQE-CKEIYENS 330
A + D L+ T+I E ++E + KK KE+V++ KEI+ N
Sbjct: 116 AFNSHFDKDFKELLSTDIEE--------------IIKEKVEKKSQKEIVRDKMKEIF-NI 160
Query: 329 LVDGNPQK 306
DGN ++
Sbjct: 161 GNDGNSEE 168
>ref|NP_048037.1| orf 66 [Ateline herpesvirus 3]
gb|AAC95590.1| orf 66 [Ateline herpesvirus 3]
Length = 444
Score = 33.9 bits (76), Expect = 5.9
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +3
Query: 240 PKLPPYAFLCCQALQFAKHKTGLL----RVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCH 407
P P + C +F G++ R +HK L+ L +L+ + W FP C
Sbjct: 60 PMWPYFLDRCNTISEFLSIWCGIVWDTRRTQVHKVKLIKLTQYLFRAYLVVLWIVFPKCR 119
Query: 408 KLIKNLRRAIRLMFQYISVNESKAIQT 488
K + + + ++YI++ KAI T
Sbjct: 120 ADFKPRKFSENIWYKYINMPFYKAIAT 146
>gb|AAX20126.1| tripartite motif protein L-TRIM [Lymnaea stagnalis]
Length = 816
Score = 33.5 bits (75), Expect = 7.8
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Frame = -3
Query: 680 IEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILADMREL 501
+ E + + L S +++ T E R EEV + + H N T ES+++ L D EL
Sbjct: 228 LSEAVTEHKTTLTSLVARVRQMTPEVERAIEEVEVMQNQLHANTTDAESKIKELFD--EL 285
Query: 500 ASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEV------VQECKEIY 339
+ ILE + E K+ A++E + ++ K + + C E+
Sbjct: 286 VT-------------ILEERKQSAIEELAKVSAVKEYVLDEQKKALHKHLSCISSCCELT 332
Query: 338 ENSLVDGN 315
E+SL+ GN
Sbjct: 333 EDSLLHGN 340
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,487,751,715
Number of Sequences: 3454138
Number of extensions: 30244696
Number of successful extensions: 85630
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 81761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85594
length of database: 1,185,965,366
effective HSP length: 126
effective length of database: 750,743,978
effective search space used: 84834069514
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)