BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_470502.1| putative ABC transporter [Oryza sativa (ja... 94 1e-18
gb|AAM15328.1| putative ABC transporter [Arabidopsis thalia... 75 5e-13
ref|NP_850111.1| ATPase, coupled to transmembrane movement ... 75 5e-13
gb|ABA97862.1| ABC transporter, putative [Oryza sativa (jap... 44 0.001
gb|ABA97845.1| ABC transporter, putative [Oryza sativa (jap... 40 0.025
ref|XP_450138.1| ABC transporter-like protein [Oryza sativa... 36 0.27
ref|NP_173226.2| ATPase, coupled to transmembrane movement ... 36 0.35
gb|AAF97264.1| Contains similarity to ATP dependent transme... 36 0.35
ref|XP_450985.1| putative ABC transporter [Oryza sativa (ja... 35 0.46
gb|AAY28856.1| white-brown complex protein 11 [Arabidopsis ... 35 0.60
ref|XP_477522.1| putative ABC transporter family protein [O... 33 2.3
ref|NP_922132.1| putative ABC transporter [Oryza sativa (ja... 32 5.1
ref|XP_429916.1| PREDICTED: hypothetical protein XP_429916 ... 31 8.7
gb|AAP80385.1| ABC transporter [Gossypium hirsutum] 31 8.7
>ref|XP_470502.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
gb|AAP44750.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 687
Score = 93.6 bits (231), Expect = 1e-18
Identities = 44/52 (84%), Positives = 48/52 (92%)
Frame = -2
Query: 402 LSFISFHTYAVQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKW 247
LS++SFH YAV+GL+ENEYVGTSFAVG IRTIPGVQAV GSYDISSS NAKW
Sbjct: 618 LSYVSFHVYAVEGLLENEYVGTSFAVGAIRTIPGVQAVGGSYDISSSANAKW 669
>gb|AAM15328.1| putative ABC transporter [Arabidopsis thaliana]
gb|AAC98459.1| putative ABC transporter [Arabidopsis thaliana]
Length = 705
Score = 75.1 bits (183), Expect = 5e-13
Identities = 31/53 (58%), Positives = 44/53 (83%)
Frame = -2
Query: 399 SFISFHTYAVQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
++ISFHTY+++GL+ENEY+G FAVG++R+I G QA++G+Y IS NAKW N
Sbjct: 607 AYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRN 659
>ref|NP_850111.1| ATPase, coupled to transmembrane movement of substances
[Arabidopsis thaliana]
Length = 730
Score = 75.1 bits (183), Expect = 5e-13
Identities = 31/53 (58%), Positives = 44/53 (83%)
Frame = -2
Query: 399 SFISFHTYAVQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
++ISFHTY+++GL+ENEY+G FAVG++R+I G QA++G+Y IS NAKW N
Sbjct: 636 AYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRN 688
>gb|ABA97862.1| ABC transporter, putative [Oryza sativa (japonica cultivar-group)]
Length = 560
Score = 44.3 bits (103), Expect = 0.001
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Frame = -2
Query: 396 FISFHTYAVQGLVENEYVGTSFAVGQI----RTIPGVQAVRGSYDISSSPNAKWVN 241
+ISFH YAVQG +NE++G SF Q+ TI G+Q ++ + +KWVN
Sbjct: 468 YISFHKYAVQGFYKNEFIGLSFPSDQLIEANATISGLQVLKERLQVEMG-YSKWVN 522
>gb|ABA97845.1| ABC transporter, putative [Oryza sativa (japonica cultivar-group)]
Length = 572
Score = 39.7 bits (91), Expect = 0.025
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -2
Query: 396 FISFHTYAVQGLVENEYVGTSFAVGQI----RTIPGVQAVRGSYDISSSPNAKWVN 241
+ISFH YAVQG +NE+VG +FA Q+ TI G Q + +KWVN
Sbjct: 482 YISFHKYAVQGFYKNEFVGQTFASDQLIMANATITGHQVLEALQ--VEMWYSKWVN 535
>ref|XP_450138.1| ABC transporter-like protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAD22442.1| ABC transporter-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 525
Score = 36.2 bits (82), Expect = 0.27
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -2
Query: 396 FISFHTYAVQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+ISFH YA+QG +NE++G + T+ G + + + + + ++KWV+
Sbjct: 424 YISFHKYALQGFYKNEFLGLVLNLEGPITVSGEKVIAELFQVETG-HSKWVD 474
>ref|NP_173226.2| ATPase, coupled to transmembrane movement of substances
[Arabidopsis thaliana]
gb|AAN12898.1| putative ABC transporter protein [Arabidopsis thaliana]
gb|AAL87274.1| putative ABC transporter protein [Arabidopsis thaliana]
Length = 703
Score = 35.8 bits (81), Expect = 0.35
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 LSFISFHTYAVQGLVENEYVGTSF-AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+S+ISFH +A+QG +N+ G +F + G IPG + + I +KW+N
Sbjct: 576 MSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLH-RSKWIN 629
>gb|AAF97264.1| Contains similarity to ATP dependent transmembrane transporter
protein (wh3) from Bombyx mori gb|AF229609 and contains
an ABC transporter PF|00005 domain. ESTs gb|Z18062,
gb|AI999375, gb|N96732, gb|F14058, gb|AV528782,
gb|AV559526, gb|AV556190, gb|AV562800, gb|AV559560,
gb|AV523165, gb|AV565094, gb|AV566285 come from this
gene. [Arabidopsis thaliana]
Length = 659
Score = 35.8 bits (81), Expect = 0.35
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 LSFISFHTYAVQGLVENEYVGTSF-AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+S+ISFH +A+QG +N+ G +F + G IPG + + I +KW+N
Sbjct: 532 MSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLH-RSKWIN 585
>ref|XP_450985.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
dbj|BAD22237.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 721
Score = 35.4 bits (80), Expect = 0.46
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -2
Query: 396 FISFHTYAVQGLVENEYVGTSF---AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+I+FH YA QG +NE++G +F G TI G + +R + + +KWV+
Sbjct: 616 YIAFHKYANQGFYKNEFLGLTFPNNQAGGAATITGHEILRDYWQVQLG-YSKWVD 669
>gb|AAY28856.1| white-brown complex protein 11 [Arabidopsis halleri subsp.
gemmifera]
Length = 687
Score = 35.0 bits (79), Expect = 0.60
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 402 LSFISFHTYAVQGLVENEYVGTSF-AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+S+ISFH +A+QG +N+ G F + G IPG + + I +KW+N
Sbjct: 568 MSYISFHFWALQGQYQNDLRGLMFDSQGSAFKIPGEYVLENVFQIDLH-RSKWIN 621
>ref|XP_477522.1| putative ABC transporter family protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAC84399.1| putative ABC transporter family protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAC79956.1| putative ABC transporter family protein [Oryza sativa (japonica
cultivar-group)]
Length = 729
Score = 33.1 bits (74), Expect = 2.3
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 396 FISFHTYAVQGLVENEYVGTSF--AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
FIS+H YA QGL +NE +G F G TI G ++ + S +KWV+
Sbjct: 639 FISYHKYATQGLYKNELLGLVFEDIGGGGLTISGEYILKNYLQVELS-YSKWVD 691
>ref|NP_922132.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
gb|AAP54419.1| ABC transporter, putative [Oryza sativa (japonica cultivar-group)]
Length = 723
Score = 32.0 bits (71), Expect = 5.1
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 402 LSFISFHTYAVQGLVENEYVGTSF--AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+S+ISFH +A+QG +N+ G F ++ IPG + + I S +KW++
Sbjct: 597 MSYISFHYWALQGQYQNDLKGLVFDNQDDELPKIPGEYILENVFQIDVS-RSKWLD 651
>ref|XP_429916.1| PREDICTED: hypothetical protein XP_429916 [Gallus gallus]
Length = 134
Score = 31.2 bits (69), Expect = 8.7
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 267 TKCRTSLERLGHQVWS*SVQQQ---TMCPRTRSPPSPAQRMCGTR 392
T+ ++ E G QV S S ++ T CP SP PA R CG R
Sbjct: 82 TRLESAAENPGMQVRSCSASRRPAVTSCPPGSSPACPAMRACGRR 126
>gb|AAP80385.1| ABC transporter [Gossypium hirsutum]
Length = 705
Score = 31.2 bits (69), Expect = 8.7
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 402 LSFISFHTYAVQGLVENEYVGTSF--AVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
+S+ISFH +A+QG +N+ G F ++ IPG + + I +KW++
Sbjct: 578 MSYISFHFWALQGQYQNDLKGLLFDNQPPELPKIPGEYILENVFQIDVG-RSKWID 632
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 881,268,981
Number of Sequences: 3454138
Number of extensions: 15496796
Number of successful extensions: 52603
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 51473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52597
length of database: 1,185,965,366
effective HSP length: 112
effective length of database: 799,101,910
effective search space used: 19178445840
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)