BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_910157.1| putative small nuclear ribonucleoprotein U... 385 e-105
emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tube... 311 3e-83
ref|NP_182280.1| U1A (SPLICEOSOMAL PROTEIN U1A); RNA bindin... 304 4e-81
ref|NP_180585.1| U2B'; RNA binding / nucleic acid binding [... 237 5e-61
gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B... 235 3e-60
gb|AAA33847.1| spliceosomal protein 229 2e-58
gb|AAF82223.1| Strong similarity to a small nuclear ribonuc... 227 6e-58
ref|NP_850936.1| RNA binding / nucleic acid binding [Arabid... 226 2e-57
ref|NP_172177.3| RNA binding / nucleic acid binding [Arabid... 226 2e-57
gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabido... 225 2e-57
gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cun... 198 4e-49
ref|XP_885291.1| PREDICTED: similar to U2 small nuclear rib... 197 6e-49
ref|XP_885348.1| PREDICTED: similar to U1 small nuclear rib... 197 8e-49
ref|XP_533663.2| PREDICTED: similar to U1 small nuclear rib... 197 8e-49
ref|XP_789234.1| PREDICTED: similar to U1 small nuclear rib... 196 1e-48
gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide ... 196 2e-48
gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide ... 195 2e-48
ref|XP_419331.1| PREDICTED: similar to U2 small nuclear rib... 194 5e-48
gb|AAH84107.1| LOC495019 protein [Xenopus laevis] 192 3e-47
ref|NP_001016784.1| small nuclear ribonucleoprotein polypep... 191 4e-47
gb|AAH44979.1| Snf-prov protein [Xenopus laevis] 191 6e-47
emb|CAA41021.1| U1 A protein [Xenopus laevis] >gi|1173326|s... 191 6e-47
ref|XP_903015.1| PREDICTED: similar to U2 small nuclear rib... 190 8e-47
emb|CAF97424.1| unnamed protein product [Tetraodon nigrovir... 189 1e-46
ref|NP_067310.1| U2 small nuclear ribonucleoprotein B [Mus ... 189 1e-46
ref|XP_925222.1| PREDICTED: similar to U2 small nuclear rib... 189 2e-46
gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide ... 189 2e-46
ref|XP_342529.1| PREDICTED: similar to hypothetical protein... 188 3e-46
dbj|BAB28565.1| unnamed protein product [Mus musculus] 188 4e-46
ref|NP_001011120.1| hypothetical protein LOC496533 [Xenopus... 188 4e-46
ref|XP_857753.1| PREDICTED: similar to U2 small nuclear rib... 187 5e-46
gb|AAH72799.1| MGC80122 protein [Xenopus laevis] 187 8e-46
ref|XP_534338.2| PREDICTED: similar to U2 small nuclear rib... 187 8e-46
gb|AAH64308.1| Unknown (protein for MGC:77810) [Danio rerio... 187 8e-46
emb|CAB38777.2| SNRPB2 [Homo sapiens] >gi|38149981|ref|NP_9... 186 1e-45
ref|XP_857793.1| PREDICTED: similar to U2 small nuclear rib... 186 2e-45
gb|AAH59527.1| LOC402896 protein [Danio rerio] 186 2e-45
emb|CAH93023.1| hypothetical protein [Pongo pygmaeus] 185 2e-45
ref|NP_056597.2| small nuclear ribonucleoprotein polypeptid... 185 3e-45
ref|XP_857709.1| PREDICTED: similar to U2 small nuclear rib... 184 7e-45
gb|EAA00418.2| ENSANGP00000019197 [Anopheles gambiae str. P... 184 7e-45
ref|XP_356179.3| PREDICTED: similar to small nuclear ribonu... 183 1e-44
ref|XP_857629.1| PREDICTED: similar to U2 small nuclear rib... 183 1e-44
ref|NP_511045.1| sans fille CG4528-PA [Drosophila melanogas... 182 3e-44
ref|XP_912677.1| PREDICTED: similar to U2 small nuclear rib... 181 4e-44
ref|XP_636725.1| hypothetical protein DDB0187919 [Dictyoste... 180 8e-44
ref|XP_536409.2| PREDICTED: similar to U2 small nuclear rib... 180 8e-44
ref|XP_857552.1| PREDICTED: similar to U2 small nuclear rib... 180 8e-44
ref|XP_857667.1| PREDICTED: similar to U2 small nuclear rib... 180 1e-43
ref|XP_358059.4| PREDICTED: similar to small nuclear ribonu... 180 1e-43
emb|CAF89828.1| unnamed protein product [Tetraodon nigrovir... 179 2e-43
gb|EAL32469.1| GA18235-PA [Drosophila pseudoobscura] 179 2e-43
ref|XP_897710.1| PREDICTED: similar to small nuclear ribonu... 179 2e-43
ref|XP_925226.1| PREDICTED: similar to small nuclear ribonu... 178 3e-43
ref|XP_911984.1| PREDICTED: similar to small nuclear ribonu... 177 7e-43
ref|XP_857593.1| PREDICTED: similar to U2 small nuclear rib... 176 1e-42
ref|XP_860797.1| PREDICTED: similar to U1 small nuclear rib... 175 3e-42
ref|XP_857512.1| PREDICTED: similar to U2 small nuclear rib... 174 6e-42
ref|XP_890109.1| PREDICTED: similar to U2 small nuclear rib... 173 1e-41
ref|XP_484200.3| PREDICTED: similar to small nuclear ribonu... 172 2e-41
ref|XP_547687.2| PREDICTED: similar to U1 small nuclear rib... 170 1e-40
ref|XP_850163.1| PREDICTED: similar to small nuclear ribonu... 168 3e-40
gb|AAT09091.1| small nuclear ribonucleoprotein [Bigelowiell... 168 4e-40
ref|XP_393440.2| PREDICTED: similar to ENSANGP00000019197 [... 164 5e-39
gb|ABA43713.1| SNF [Bombyx mori] 163 1e-38
ref|XP_354985.4| PREDICTED: similar to U1 small nuclear rib... 159 1e-37
emb|CAE68286.1| Hypothetical protein CBG13971 [Caenorhabdit... 156 1e-36
ref|XP_512674.1| PREDICTED: similar to U1 small nuclear rib... 154 8e-36
gb|AAA98032.2| Rnp (rrm rna binding domain) containing prot... 153 1e-35
gb|EAR82989.1| U1 small nuclear ribonucleoprotein A [Tetrah... 152 2e-35
ref|XP_850387.1| PREDICTED: similar to small nuclear ribonu... 151 4e-35
gb|AAW26245.1| SJCHGC05726 protein [Schistosoma japonicum] 149 2e-34
gb|AAA98033.1| Rnp (rrm rna binding domain) containing prot... 148 4e-34
emb|CAE68287.1| Hypothetical protein CBG13972 [Caenorhabdit... 140 1e-31
emb|CAA19287.1| SPBC4B4.07c [Schizosaccharomyces pombe] >gi... 134 9e-30
ref|XP_657713.1| hypothetical protein AN0109.2 [Aspergillus... 131 6e-29
ref|XP_514523.1| PREDICTED: similar to U2 small nuclear rib... 131 6e-29
gb|EAS07024.1| U1 small nuclear ribonucleoprotein A [Tetrah... 130 7e-29
gb|AAW47016.1| RNA binding protein, putative [Cryptococcus ... 122 3e-26
ref|XP_675204.1| small nuclear ribonucleoprotein [Plasmodiu... 122 3e-26
ref|XP_885269.1| PREDICTED: similar to small nuclear ribonu... 121 4e-26
gb|EAQ87968.1| conserved hypothetical protein [Chaetomium g... 119 2e-25
pdb|1FHT| Rna-Binding Domain Of The U1a Spliceosomal Prote... 118 4e-25
ref|XP_753458.1| small nuclear ribonucleoprotein [Aspergill... 118 4e-25
ref|XP_728920.1| hypothetical protein PY01195 [Plasmodium y... 117 6e-25
emb|CAE85534.1| related to small nuclear ribonucleoprotein ... 116 2e-24
ref|XP_384462.1| hypothetical protein FG04286.1 [Gibberella... 115 3e-24
ref|XP_743519.1| u1 small nuclear ribonucleoprotein a [Plas... 114 9e-24
dbj|BAE62906.1| unnamed protein product [Aspergillus oryzae] 113 2e-23
ref|XP_701289.1| PREDICTED: hypothetical protein XP_696197 ... 112 2e-23
emb|CAD52203.1| u1 small nuclear ribonucleoprotein a, putat... 112 3e-23
gb|AAH08311.1| Similar to small nuclear ribonucleoprotein p... 110 1e-22
pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures 110 1e-22
gb|AAI02329.1| Unknown (protein for IMAGE:7951083) [Bos tau... 110 1e-22
pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Prot... 110 1e-22
ref|XP_679094.1| U1 small nuclear ribonucleoprotein A [Plas... 110 1e-22
gb|AAW78984.1| GekBS138P [Gekko japonicus] 108 5e-22
emb|CAD52025.1| small nuclear ribonucleoprotein (snRNP), pu... 107 1e-21
pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delt... 106 1e-21
dbj|BAB23823.1| unnamed protein product [Mus musculus] 104 7e-21
pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTW... 103 2e-20
pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom ... 103 2e-20
pdb|1OIA|B Chain B, U1a Rnp Domain 1-95 >gi|33357758|pdb|1O... 102 2e-20
gb|AAX27773.2| SJCHGC09182 protein [Schistosoma japonicum] 102 4e-20
ref|XP_726090.1| U1 small nuclear ribonucleoprotein a [Plas... 101 5e-20
pdb|1A9N|D Chain D, U2 B''A'RNA TERNARY COMPLEX >gi|3659937... 100 2e-19
pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme 99 3e-19
pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA... 99 3e-19
ref|XP_756954.1| hypothetical protein UM00807.1 [Ustilago m... 99 3e-19
emb|CAI75278.1| U1 snRNP protein, putative [Theileria annul... 97 2e-18
ref|XP_600315.2| PREDICTED: similar to U2 small nuclear rib... 95 4e-18
emb|CAA44752.1| U2-snRNP-specific b'' [Mus musculus] 93 2e-17
pdb|2U1A| Rna Binding Domain 2 Of Human U1a Protein, Nmr, ... 93 2e-17
ref|XP_656582.1| U1snRNP-specific protein [Entamoeba histol... 93 2e-17
emb|CAA44751.1| U2-snRNP-specific b'' [Mus musculus] 89 2e-16
gb|EAQ93320.1| hypothetical protein CHGG_01555 [Chaetomium ... 89 3e-16
ref|XP_764943.1| U2 small nuclear ribonucleoprotein B [Thei... 89 4e-16
ref|XP_913771.1| PREDICTED: similar to small nuclear ribonu... 87 2e-15
ref|XP_894188.1| PREDICTED: similar to small nuclear ribonu... 87 2e-15
emb|CAI74606.1| U1/2 small nuclear ribonucleoprotein, putat... 87 2e-15
ref|XP_573460.1| PREDICTED: similar to U2 small nuclear rib... 86 3e-15
ref|XP_964275.1| hypothetical protein [Neurospora crassa N1... 84 1e-14
emb|CAG85550.1| unnamed protein product [Debaryomyces hanse... 83 2e-14
ref|XP_896621.1| PREDICTED: similar to U2 small nuclear rib... 83 2e-14
ref|XP_716616.1| hypothetical protein CaO19_7375 [Candida a... 82 4e-14
dbj|BAE57260.1| unnamed protein product [Aspergillus oryzae] 80 1e-13
ref|XP_890384.1| PREDICTED: similar to U2 small nuclear rib... 76 2e-12
ref|XP_919899.1| PREDICTED: similar to U2 small nuclear rib... 76 2e-12
ref|XP_503112.1| hypothetical protein [Yarrowia lipolytica]... 75 5e-12
gb|AAR97868.1| sans fille [Drosophila huaylasi] >gi|4095046... 73 2e-11
gb|AAR97867.1| sans fille [Drosophila mayaguana] >gi|409504... 72 5e-11
gb|AAR97859.1| sans fille [Drosophila arizonae] 71 7e-11
gb|AAR97856.1| sans fille [Drosophila navojoa] >gi|40950443... 71 7e-11
ref|XP_738251.1| small nuclear ribonucleoprotein (snRNP) [P... 69 3e-10
ref|XP_750541.1| U1 small nuclear ribonucleoprotein A [Aspe... 69 3e-10
ref|XP_731718.1| hypothetical protein PC301396.00.0 [Plasmo... 66 2e-09
ref|XP_503188.1| hypothetical protein [Yarrowia lipolytica]... 65 4e-09
ref|XP_761732.1| hypothetical protein UM05585.1 [Ustilago m... 65 5e-09
ref|XP_763055.1| hypothetical protein TP03_0036 [Theileria ... 64 8e-09
ref|XP_868632.1| PREDICTED: similar to Polypyrimidine tract... 64 8e-09
emb|CAA17824.1| SPBC8D2.09c [Schizosaccharomyces pombe] >gi... 64 1e-08
emb|CAA43202.1| pyrimidine binding protein 1 [Rattus norveg... 64 1e-08
dbj|BAA21437.1| spliceosomal protein [Schizosaccharomyces p... 64 1e-08
dbj|BAE43140.1| unnamed protein product [Mus musculus] 63 2e-08
gb|AAL38169.1| polypyrimidine-tract binding protein [Bos ta... 62 3e-08
ref|XP_868641.1| PREDICTED: similar to Polypyrimidine tract... 62 3e-08
emb|CAA43973.1| polypirimidine tract binding protein [Homo ... 62 4e-08
ref|XP_708678.1| PREDICTED: similar to Polypyrimidine tract... 62 5e-08
ref|XP_688958.1| PREDICTED: similar to Polypyrimidine tract... 61 7e-08
dbj|BAC29560.1| unnamed protein product [Mus musculus] 61 9e-08
dbj|BAE29183.1| unnamed protein product [Mus musculus] >gi|... 61 9e-08
ref|XP_663383.1| hypothetical protein AN5779.2 [Aspergillus... 60 1e-07
dbj|BAB86943.1| polypirimidine tract binding protein [Mus m... 60 1e-07
dbj|BAE29899.1| unnamed protein product [Mus musculus] 60 2e-07
emb|CAG85430.1| unnamed protein product [Debaryomyces hanse... 59 5e-07
ref|XP_868637.1| PREDICTED: similar to polypyrimidine tract... 57 1e-06
ref|NP_114367.1| polypyrimidine tract-binding protein 1 iso... 57 2e-06
emb|CAF90432.1| unnamed protein product [Tetraodon nigrovir... 55 4e-06
ref|XP_687132.1| PREDICTED: similar to polypyrimidine tract... 55 7e-06
gb|AAH91854.1| Sb:cb363 protein [Danio rerio] 55 7e-06
gb|AAH28848.1| Ptbp1 protein [Mus musculus] 54 9e-06
ref|XP_709197.1| PREDICTED: similar to polypyrimidine tract... 54 9e-06
ref|XP_709198.1| PREDICTED: similar to polypyrimidine tract... 54 9e-06
gb|AAH07472.1| Ptbp1 protein [Mus musculus] >gi|74191391|db... 54 1e-05
gb|AAH66210.1| Ptbp1 protein [Mus musculus] 54 1e-05
dbj|BAE32096.1| unnamed protein product [Mus musculus] 54 1e-05
dbj|BAC65159.1| polypirimidine tract binding protein [Mus m... 54 1e-05
emb|CAA36321.1| 25kDa nuclear protein [Mus musculus] >gi|66... 54 1e-05
gb|AAH86489.1| Ptbp1 protein [Mus musculus] 53 2e-05
ref|XP_686978.1| PREDICTED: similar to polypyrimidine tract... 53 2e-05
gb|AAH95372.1| Hypothetical protein LOC323490 [Danio rerio]... 53 2e-05
gb|AAX69673.1| U2 small nuclear ribonucleoprotein B, putati... 53 2e-05
gb|AAW41787.1| hypothetical protein CNB00870 [Cryptococcus ... 52 4e-05
ref|XP_818122.1| U2 small nuclear ribonucleoprotein B [Tryp... 51 9e-05
ref|XP_451928.1| unnamed protein product [Kluyveromyces lac... 50 2e-04
gb|AAZ09538.1| hypothetical protein, conserved [Leishmania ... 49 3e-04
ref|XP_500857.1| hypothetical protein [Yarrowia lipolytica]... 49 4e-04
gb|AAH17480.1| Heterogeneous nuclear ribonucleoprotein L-li... 49 5e-04
ref|XP_872202.1| PREDICTED: similar to heterogeneous nuclea... 49 5e-04
emb|CAD98506.1| U1 snrnp, possible [Cryptosporidium parvum] 49 5e-04
ref|XP_233805.3| PREDICTED: similar to heterogeneous nuclea... 49 5e-04
dbj|BAE27500.1| unnamed protein product [Mus musculus] 49 5e-04
sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprote... 49 5e-04
dbj|BAE02506.1| unnamed protein product [Macaca fascicularis] 49 5e-04
gb|AAH12849.2| Heterogeneous nuclear ribonucleoprotein L-li... 49 5e-04
dbj|BAB28521.1| unnamed protein product [Mus musculus] 49 5e-04
gb|AAQ20084.2| stromal RNA regulating factor [Homo sapiens]... 49 5e-04
ref|XP_414998.1| PREDICTED: similar to hypothetical protein... 48 6e-04
ref|XP_667641.1| U1 snrnp [Cryptosporidium hominis TU502] >... 47 0.001
ref|XP_708601.1| PREDICTED: similar to polypyrimidine tract... 47 0.001
emb|CAG58376.1| unnamed protein product [Candida glabrata C... 47 0.001
ref|XP_698115.1| PREDICTED: similar to ROD1 regulator of di... 47 0.002
gb|AAS51549.1| ADL371Cp [Ashbya gossypii ATCC 10895] >gi|45... 47 0.002
emb|CAA50378.1| U1 snRNP A protein [Saccharomyces cerevisia... 45 0.007
ref|XP_723243.1| hypothetical protein CaO19_12210 [Candida ... 45 0.007
emb|CAA55621.1| small nuclear ribonucleoprotein [Saccharomy... 45 0.007
emb|CAA64866.1| mec-8 [Caenorhabditis elegans] 44 0.009
emb|CAB03111.1| Hypothetical protein F46A9.6 [Caenorhabditi... 44 0.009
ref|XP_884642.1| PREDICTED: similar to heterogeneous nuclea... 44 0.009
gb|AAH04763.1| Hnrpll protein [Mus musculus] 44 0.009
ref|XP_723434.1| hypothetical protein CaO19_4748 [Candida a... 44 0.009
gb|AAH99272.1| Unknown (protein for MGC:116464) [Xenopus la... 44 0.015
gb|AAR97857.1| sans fille [Drosophila arizonae] 44 0.015
ref|XP_614044.2| PREDICTED: similar to heterogeneous nuclea... 43 0.020
ref|XP_532938.2| PREDICTED: similar to heterogeneous nuclea... 43 0.020
ref|XP_635793.1| hypothetical protein DDB0188830 [Dictyoste... 43 0.020
ref|XP_455748.1| unnamed protein product [Kluyveromyces lac... 43 0.020
dbj|BAE37269.1| unnamed protein product [Mus musculus] 43 0.026
ref|XP_646953.1| hypothetical protein DDB0202330 [Dictyoste... 43 0.026
ref|XP_707541.1| PREDICTED: similar to Heterogeneous nuclea... 43 0.026
gb|AAH80452.1| MGC89658 protein [Xenopus tropicalis] >gi|56... 42 0.034
emb|CAI75908.1| RNA splicing factor, putative [Theileria an... 42 0.034
ref|XP_762815.1| splicing factor [Theileria parva strain Mu... 42 0.044
ref|XP_753803.1| hypothetical protein Afu5g08330 [Aspergill... 42 0.044
ref|XP_917567.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.044
ref|XP_501900.1| hypothetical protein [Yarrowia lipolytica]... 42 0.044
ref|XP_586588.2| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
ref|XP_880704.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
ref|XP_866411.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
emb|CAA80599.1| hnRNP G protein [Homo sapiens] 42 0.057
dbj|BAE00972.1| unnamed protein product [Macaca fascicularis] 42 0.057
gb|AAH07435.1| RNA binding motif protein, X chromosome [Hom... 42 0.057
gb|AAH03710.1| RNA binding motif protein, X chromosome [Mus... 42 0.057
ref|XP_881201.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
emb|CAB51361.1| heterogeneous nuclear ribonucleoprotein G [... 42 0.057
ref|XP_866389.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
gb|AAH97479.1| Hypothetical protein LOC302855 [Rattus norve... 42 0.057
ref|XP_880849.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
ref|XP_880773.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
ref|XP_452046.1| unnamed protein product [Kluyveromyces lac... 42 0.057
pir||S41766 heterogeneous nuclear ribonucleoprotein G - human 42 0.057
emb|CAG31684.1| hypothetical protein [Gallus gallus] 42 0.057
emb|CAE60190.1| Hypothetical protein CBG03748 [Caenorhabdit... 42 0.057
ref|XP_853786.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] 42 0.057
ref|XP_380712.1| hypothetical protein FG00536.1 [Gibberella... 42 0.057
ref|XP_880626.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
ref|XP_866399.1| PREDICTED: similar to Heterogeneous nuclea... 42 0.057
gb|AAS52227.1| ADR307Wp [Ashbya gossypii ATCC 10895] >gi|45... 41 0.075
ref|NP_701596.1| polyadenylate-binding protein, putative [P... 41 0.075
ref|XP_525735.1| PREDICTED: hypothetical protein XP_525735 ... 41 0.075
dbj|BAC31099.1| unnamed protein product [Mus musculus] >gi|... 41 0.075
ref|XP_520521.1| PREDICTED: similar to Heterogeneous nuclea... 41 0.075
gb|AAD01997.1| heterogeneous nuclear ribonucleoprotein G [M... 41 0.098
ref|NP_683582.2| RNA binding / nucleic acid binding [Arabid... 41 0.098
ref|XP_656357.1| U1 small nuclear ribonucleoprotein subunit... 41 0.098
gb|EAR84555.1| polypyrimidine tract-binding protein [Tetrah... 41 0.098
emb|CAA64070.1| Neosin [Mus musculus] 40 0.13
emb|CAD33925.1| proline rich protein 3 [Cicer arietinum] 40 0.13
ref|NP_001014392.1| hypothetical protein LOC541556 [Danio r... 40 0.17
gb|AAH84231.1| LOC495068 protein [Xenopus laevis] 40 0.17
ref|XP_766017.1| hypothetical protein TP01_0497 [Theileria ... 40 0.17
gb|AAS50387.1| AAR022Wp [Ashbya gossypii ATCC 10895] >gi|45... 40 0.17
emb|CAJ03474.1| hypothetical protein, unknown function [Lei... 40 0.22
dbj|BAE02304.1| unnamed protein product [Macaca fascicularis] 40 0.22
emb|CAJ03470.1| hypothetical protein, unknown function [Lei... 40 0.22
ref|NP_187983.1| RNA binding / nucleic acid binding [Arabid... 40 0.22
sp|P84586|HNRPG_RAT Heterogeneous nuclear ribonucleoprotein... 40 0.22
gb|EAA05544.1| ENSANGP00000012477 [Anopheles gambiae str. P... 40 0.22
ref|NP_850366.1| nucleic acid binding [Arabidopsis thaliana] 40 0.22
gb|AAO37215.1| hypothetical protein [Arabidopsis thaliana] 40 0.22
gb|AAB88654.1| putative RNA-binding protein [Arabidopsis th... 40 0.22
emb|CAI73598.1| ribonucleoprotein, putative [Theileria annu... 40 0.22
ref|XP_752199.1| ribosome biogenesis Nop4 [Aspergillus fumi... 40 0.22
ref|XP_575394.1| PREDICTED: similar to RNA binding motif pr... 40 0.22
gb|AAO37217.1| hypothetical protein [Arabidopsis thaliana] ... 40 0.22
dbj|BAB01919.1| unnamed protein product [Arabidopsis thaliana] 40 0.22
gb|AAO37216.1| hypothetical protein [Arabidopsis thaliana] 40 0.22
dbj|BAD94469.1| putative RNA-binding protein [Arabidopsis t... 40 0.22
ref|XP_680725.1| hypothetical protein AN7456.2 [Aspergillus... 39 0.29
gb|AAW25694.1| SJCHGC05278 protein [Schistosoma japonicum] 39 0.29
dbj|BAB01713.1| unnamed protein product [Arabidopsis thaliana] 39 0.29
ref|XP_964717.1| hypothetical protein [Neurospora crassa N1... 39 0.29
ref|XP_386442.1| hypothetical protein FG06266.1 [Gibberella... 39 0.29
ref|XP_394225.2| PREDICTED: similar to hypothetical protein... 39 0.29
dbj|BAE57203.1| unnamed protein product [Aspergillus oryzae] 39 0.29
gb|EAS00521.1| probable RNA-binding protein [Tetrahymena th... 39 0.29
dbj|BAD96714.1| FUS interacting protein (serine-arginine ri... 39 0.29
ref|XP_480994.1| putative mec-8 [Oryza sativa (japonica cul... 39 0.29
ref|XP_868629.1| PREDICTED: similar to Polypyrimidine tract... 39 0.37
gb|EAS04954.1| polypyrimidine tract-binding protein 1 (PTB)... 39 0.37
gb|EAQ89618.1| hypothetical protein CHGG_06237 [Chaetomium ... 39 0.37
emb|CAI74447.1| RNA binding protein, putative [Theileria an... 39 0.37
ref|NP_610003.1| CG10466-PA [Drosophila melanogaster] >gi|7... 39 0.37
ref|XP_628659.1| U1 small nuclear ribonucleoprotein A, [Cry... 39 0.37
gb|AAH56275.1| Zgc:65772 protein [Danio rerio] >gi|41055271... 36 0.42
emb|CAG12690.1| unnamed protein product [Tetraodon nigrovir... 39 0.49
emb|CAD61910.1| unnamed protein product [Homo sapiens] >gi|... 39 0.49
gb|AAH44487.1| RNA-binding region (RNP1, RRM) containing 2 ... 39 0.49
gb|AAS54452.1| AGL038Cp [Ashbya gossypii ATCC 10895] >gi|45... 39 0.49
ref|XP_868634.1| PREDICTED: similar to polypyrimidine tract... 39 0.49
ref|XP_848788.1| PREDICTED: similar to RNA-binding region (... 39 0.49
ref|XP_680969.1| hypothetical protein AN7700.2 [Aspergillus... 39 0.49
gb|AAG24388.1| PP239 protein [Homo sapiens] 39 0.49
ref|NP_060577.2| hypothetical protein LOC55147 [Homo sapien... 39 0.49
emb|CAF93583.1| unnamed protein product [Tetraodon nigrovir... 39 0.49
ref|XP_537365.2| PREDICTED: similar to RNA-binding region c... 39 0.49
ref|XP_857031.1| PREDICTED: similar to RNA-binding region c... 39 0.49
emb|CAH89665.1| hypothetical protein [Pongo pygmaeus] 39 0.49
gb|AAH24208.1| Hypothetical protein LOC55147 [Homo sapiens] 39 0.49
dbj|BAA91638.1| unnamed protein product [Homo sapiens] 39 0.49
ref|XP_483639.1| putative RNA-binding protein [Oryza sativa... 39 0.49
ref|XP_470149.1| putative RNA binding protein [Oryza sativa... 39 0.49
dbj|BAD46364.1| putative RNA-binding protein [Oryza sativa ... 39 0.49
gb|AAT12330.1| U1 small ribonucleoprotein [Antonospora locu... 39 0.49
ref|XP_513202.1| PREDICTED: similar to TLS-associated prote... 38 0.64
emb|CAI14807.1| FUS interacting protein (serine-arginine ri... 38 0.64
gb|AAH37591.1| Fusip1 protein [Mus musculus] 38 0.64
ref|NP_001026077.1| FUS interacting protein (serine-arginin... 38 0.64
ref|NP_473357.1| FUS interacting protein (serine-arginine r... 38 0.64
dbj|BAE22485.1| unnamed protein product [Mus musculus] 38 0.64
dbj|BAA35092.1| neural specific sr protein NSSR 1 [Mus musc... 38 0.64
ref|XP_865070.1| PREDICTED: similar to RNA-binding region (... 38 0.64
ref|XP_638262.1| hypothetical protein DDB0218709 [Dictyoste... 38 0.64
ref|XP_886631.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_865202.1| PREDICTED: similar to RNA-binding region (... 38 0.64
dbj|BAE32977.1| unnamed protein product [Mus musculus] >gi|... 38 0.64
ref|XP_886717.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_886666.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_886555.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_865304.1| PREDICTED: similar to RNA-binding region c... 38 0.64
gb|AAH04000.1| Rnpc2 protein [Mus musculus] 38 0.64
gb|AAH86645.1| Rnpc2 protein [Mus musculus] >gi|74151058|db... 38 0.64
ref|XP_873382.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_514612.1| PREDICTED: similar to Rnpc2 protein [Pan t... 38 0.64
ref|XP_865289.1| PREDICTED: similar to RNA-binding region c... 38 0.64
gb|AAL32373.1| transcription coactivator CAPER [Mus musculu... 38 0.64
ref|XP_865220.1| PREDICTED: similar to RNA-binding region (... 38 0.64
gb|AAH98831.1| FUS interacting protein (serine-arginine ric... 38 0.64
ref|XP_865185.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|NP_006616.1| FUS interacting protein (serine-arginine r... 38 0.64
ref|XP_886619.1| PREDICTED: similar to RNA-binding region c... 38 0.64
dbj|BAE22085.1| unnamed protein product [Mus musculus] 38 0.64
dbj|BAE29284.1| unnamed protein product [Mus musculus] >gi|... 38 0.64
dbj|BAA35093.1| neural specific sr protein NSSR 2 [Mus musc... 38 0.64
dbj|BAE22477.1| unnamed protein product [Mus musculus] 38 0.64
emb|CAH18281.2| hypothetical protein [Homo sapiens] 38 0.64
gb|AAW46643.1| conserved hypothetical protein [Cryptococcus... 38 0.64
ref|XP_585544.2| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_865090.1| PREDICTED: similar to RNA-binding region (... 38 0.64
emb|CAE45890.1| hypothetical protein [Homo sapiens] 38 0.64
emb|CAE76253.1| related to heterogeneous nuclear ribonucleo... 38 0.64
ref|XP_865145.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_965346.1| hypothetical protein [Neurospora crassa N1... 38 0.64
ref|XP_886657.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_886645.1| PREDICTED: similar to RNA-binding region c... 38 0.64
ref|XP_583691.2| PREDICTED: similar to RNA-binding protein ... 38 0.64
ref|XP_865167.1| PREDICTED: similar to RNA-binding region c... 38 0.64
emb|CAI14804.1| FUS interacting protein (serine-arginine ri... 38 0.64
ref|XP_425690.1| PREDICTED: similar to RNA-binding region c... 38 0.64
gb|AAI05542.1| Unknown (protein for IMAGE:8120827) [Bos tau... 38 0.64
emb|CAI14806.1| FUS interacting protein (serine-arginine ri... 38 0.64
emb|CAI14805.1| FUS interacting protein (serine-arginine ri... 38 0.64
ref|XP_550643.1| RNA-binding protein-like [Oryza sativa (ja... 38 0.83
emb|CAA44805.1| nucleolin [Xenopus laevis] >gi|464252|sp|P2... 38 0.83
ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containi... 38 0.83
gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA inter... 38 0.83
ref|XP_779742.1| RNA-binding protein [Giardia lamblia ATCC ... 38 0.83
sp|O35479|HNRPG_MOUSE Heterogeneous nuclear ribonucleoprote... 38 0.83
ref|XP_642125.1| hypothetical protein DDB0204424 [Dictyoste... 38 0.83
gb|EAA04971.3| ENSANGP00000018775 [Anopheles gambiae str. P... 38 0.83
gb|AAT43620.1| sugar ABC transporter 1, permease protein [P... 38 0.83
gb|AAC65342.1| RNA-binding protein, putative [Treponema pal... 38 0.83
gb|EAQ93201.1| conserved hypothetical protein [Chaetomium g... 38 0.83
ref|XP_522797.1| PREDICTED: similar to RNA binding motif pr... 37 1.1
emb|CAI20446.1| RP1-3J17.2 [Homo sapiens] 37 1.1
emb|CAI20447.1| RP1-3J17.2 [Homo sapiens] >gi|62897111|dbj|... 37 1.1
dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA inte... 37 1.1
gb|AAD38198.1| NSAP1 protein [Homo sapiens] 37 1.1
gb|AAK59705.1| hnRNP Q1 [Homo sapiens] 37 1.1
gb|AAK59703.1| hnRNP Q3 [Homo sapiens] >gi|44888320|sp|O605... 37 1.1
ref|XP_453427.1| unnamed protein product [Kluyveromyces lac... 37 1.1
gb|AAL57515.1| SRrp35 [Homo sapiens] >gi|47606193|sp|Q8WXF0... 37 1.1
gb|AAH21715.1| Serine-arginine repressor protein (35 kDa) [... 37 1.1
ref|XP_518621.1| PREDICTED: similar to Syncrip protein [Pan... 37 1.1
ref|XP_532223.2| PREDICTED: similar to NS1-associated prote... 37 1.1
dbj|BAE62423.1| unnamed protein product [Aspergillus oryzae] 37 1.1
ref|XP_589665.2| PREDICTED: similar to synaptotagmin bindin... 37 1.1
ref|NP_982813.1| ABL134Cp [Eremothecium gossypii] >gi|44980... 37 1.1
gb|AAH40844.1| SYNCRIP protein [Homo sapiens] 37 1.1
gb|AAH15575.1| SYNCRIP protein [Homo sapiens] 37 1.1
emb|CAJ06452.1| hypothetical protein, conserved [Leishmania... 37 1.1
gb|AAH70529.1| MGC78820 protein [Xenopus laevis] 37 1.1
ref|YP_503875.1| RNA-binding region RNP-1 (RNA recognition ... 37 1.1
emb|CAD52364.1| splicing factor, putative [Plasmodium falci... 37 1.1
emb|CAA76346.1| putative arginine/serine-rich splicing fact... 37 1.1
emb|CAG33538.1| RNPC4 [Homo sapiens] 37 1.1
emb|CAD97833.1| hypothetical protein [Homo sapiens] 37 1.1
gb|AAI03101.1| Unknown (protein for MGC:128430) [Bos taurus] 37 1.1
emb|CAH92974.1| hypothetical protein [Pongo pygmaeus] 37 1.4
gb|AAA82270.1| Sr protein (splicing factor) protein 6, isof... 37 1.4
gb|AAH93451.1| RNA-binding region (RNP1, RRM) containing 2 ... 37 1.4
ref|XP_508578.1| PREDICTED: similar to RBM4-like protein [P... 37 1.4
dbj|BAE00342.1| unnamed protein product [Macaca fasciculari... 37 1.4
ref|XP_591446.1| PREDICTED: similar to Probable RNA-binding... 37 1.4
ref|XP_343447.2| PREDICTED: similar to NS1-associated prote... 37 1.4
sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprote... 37 1.4
emb|CAD70621.1| polypyrimidine track-binding protein homolo... 37 1.4
ref|NP_062770.1| NS1-associated protein 1 isoform 2 [Mus mu... 37 1.4
ref|NP_190296.1| RNA binding / nucleic acid binding [Arabid... 37 1.4
gb|AAH80309.1| NS1-associated protein 1 [Mus musculus] >gi|... 37 1.4
ref|XP_887098.1| PREDICTED: similar to zinc responsive prot... 37 1.4
ref|XP_865386.1| PREDICTED: similar to zinc responsive prot... 37 1.4
gb|AAH55863.1| Syncrip protein [Mus musculus] 37 1.4
gb|EAA09129.2| ENSANGP00000003770 [Anopheles gambiae str. P... 37 1.4
dbj|BAE65113.1| unnamed protein product [Aspergillus oryzae] 37 1.4
emb|CAJ83230.1| FUS interacting protein (serine/arginine-ri... 37 1.4
ref|XP_872013.1| PREDICTED: similar to RNA-binding region (... 37 1.4
gb|AAH58807.1| Syncrip protein [Mus musculus] 37 1.4
gb|AAI08364.1| Unknown (protein for IMAGE:4239809) [Mus mus... 37 1.4
gb|AAH75146.1| MGC81970 protein [Xenopus laevis] 37 1.4
gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens] ... 37 1.4
ref|XP_582093.2| PREDICTED: similar to zinc responsive prot... 37 1.4
ref|XP_533216.1| PREDICTED: similar to zinc responsive prot... 37 1.4
gb|AAH41148.1| Syncrip protein [Mus musculus] 37 1.4
ref|NP_062640.1| NS1-associated protein 1 isoform 1 [Mus mu... 37 1.4
ref|NP_033058.2| RNA binding motif protein 4 [Mus musculus]... 37 1.4
gb|AAL11726.1| RRM RNA binding protein NSAP1 [Mus musculus] 37 1.4
gb|AAK14991.1| RNA-binding protein lark [Oryctolagus cunicu... 37 1.4
gb|AAH77813.1| Rnpc2-prov protein [Xenopus laevis] 37 1.4
gb|AAC53171.1| Mlark [Mus musculus] 37 1.4
ref|XP_884271.1| PREDICTED: similar to RNA-binding region (... 37 1.4
ref|XP_884345.1| PREDICTED: similar to Probable RNA-binding... 37 1.4
gb|AAH50079.1| Syncrip protein [Mus musculus] 37 1.4
ref|XP_677383.1| polyadenylate-binding protein [Plasmodium ... 37 1.4
emb|CAG11305.1| unnamed protein product [Tetraodon nigrovir... 37 1.4
gb|AAI04571.1| Unknown (protein for MGC:128953) [Bos taurus] 37 1.4
gb|AAP06440.1| similar to NM_006276 splicing factor, argini... 37 1.4
ref|XP_637842.1| hypothetical protein DDB0186914 [Dictyoste... 37 1.4
ref|XP_725855.1| hypothetical protein PY05398 [Plasmodium y... 37 1.4
gb|AAL32214.1| Sr protein (splicing factor) protein 6, isof... 37 1.4
ref|NP_002887.1| RNA binding motif protein 4 [Homo sapiens]... 37 1.4
ref|NP_001006309.2| heterogeneous nuclear ribonucleoprotein... 37 1.4
gb|AAL32213.1| Sr protein (splicing factor) protein 6, isof... 37 1.4
gb|AAP92603.1| Ab2-339 [Rattus norvegicus] >gi|44888314|sp|... 37 1.4
gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus] 37 1.4
gb|AAW27244.1| SJCHGC09413 protein [Schistosoma japonicum] 37 1.4
ref|NP_079993.2| 4921506I22Rik protein [Mus musculus] >gi|1... 37 1.4
ref|XP_865469.1| PREDICTED: similar to RNA-binding protein ... 37 1.4
ref|NP_001007015.2| zinc responsive protein ZD7 [Rattus nor... 37 1.4
dbj|BAE36923.1| unnamed protein product [Mus musculus] 37 1.4
ref|XP_215201.3| PREDICTED: similar to RNA binding motif pr... 37 1.4
ref|XP_508576.1| PREDICTED: similar to RNA binding motif pr... 37 1.4
gb|AAH64960.1| RBM4 protein [Homo sapiens] >gi|73982926|ref... 37 1.4
gb|AAH86338.1| LOC474154 protein [Rattus norvegicus] >gi|60... 37 1.4
ref|XP_887082.1| PREDICTED: similar to zinc responsive prot... 37 1.4
dbj|BAE34743.1| unnamed protein product [Mus musculus] >gi|... 37 1.4
emb|CAE70885.1| Hypothetical protein CBG17675 [Caenorhabdit... 37 1.4
emb|CAH10593.1| hypothetical protein [Homo sapiens] >gi|180... 37 1.4
gb|AAT09814.1| MEG5 [Zea mays] 37 1.8
emb|CAE85545.1| related to translation initiation factor eI... 37 1.8
gb|AAH66570.1| NS1-associated protein 1 [Danio rerio] 37 1.8
gb|AAH46902.1| NS1-associated protein 1 [Danio rerio] >gi|4... 37 1.8
ref|XP_655058.1| hypothetical protein 37.t00027 [Entamoeba ... 37 1.8
ref|XP_864466.1| PREDICTED: similar to squamous cell carcin... 37 1.8
ref|XP_962716.1| hypothetical protein [Neurospora crassa N1... 37 1.8
ref|XP_864427.1| PREDICTED: similar to squamous cell carcin... 37 1.8
gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio] 37 1.8
emb|CAH90660.1| hypothetical protein [Pongo pygmaeus] 37 1.8
ref|XP_547294.2| PREDICTED: similar to FUS interacting prot... 37 1.8
ref|XP_385241.1| hypothetical protein FG05065.1 [Gibberella... 37 1.8
gb|EAQ86664.1| hypothetical protein CHGG_07917 [Chaetomium ... 37 1.8
emb|CAG02236.1| unnamed protein product [Tetraodon nigrovir... 37 1.8
ref|XP_518634.1| PREDICTED: similar to 35 kDa SR repressor ... 37 1.8
ref|XP_543445.2| PREDICTED: similar to squamous cell carcin... 37 1.8
emb|CAE59624.1| Hypothetical protein CBG03033 [Caenorhabdit... 37 1.8
ref|XP_941333.1| PREDICTED: similar to FUS interacting prot... 37 1.8
ref|ZP_00989270.1| RNA-binding protein [Vibrio splendidus 1... 37 1.8
gb|AAH84490.1| FUS interacting protein (serine-arginine ric... 37 1.8
gb|EAA14200.2| ENSANGP00000015053 [Anopheles gambiae str. P... 37 1.8
ref|XP_755320.1| eukaryotic translation initiation factor 3... 37 1.8
ref|XP_680098.1| cyclophilin [Plasmodium berghei strain ANK... 36 2.4
ref|XP_766553.1| hypothetical protein TP01_1032 [Theileria ... 36 2.4
gb|AAN36708.1| hypothetical protein [Plasmodium falciparum ... 36 2.4
ref|NP_695218.1| developmentally regulated RNA-binding prot... 36 2.4
ref|XP_884672.1| PREDICTED: similar to heterogeneous nuclea... 36 2.4
ref|XP_216364.3| PREDICTED: similar to 35 kDa SR repressor ... 36 2.4
ref|XP_663621.1| hypothetical protein AN6017.2 [Aspergillus... 36 2.4
gb|AAF88006.1| contains similarity to Pfam family PF00076 (... 36 2.4
dbj|BAD43393.1| putative protein [Arabidopsis thaliana] 36 2.4
dbj|BAD42910.1| putative protein [Arabidopsis thaliana] 36 2.4
ref|NP_192643.2| RNA binding / nucleic acid binding [Arabid... 36 2.4
gb|EAA03881.3| ENSANGP00000017132 [Anopheles gambiae str. P... 36 2.4
ref|XP_505328.1| hypothetical protein [Yarrowia lipolytica]... 36 2.4
ref|NP_193001.2| RNA binding / nucleic acid binding [Arabid... 36 2.4
emb|CAF97577.1| unnamed protein product [Tetraodon nigrovir... 36 2.4
ref|XP_656069.1| cyclophilin [Entamoeba histolytica HM-1:IM... 36 2.4
ref|XP_765110.1| U1 small nuclear ribonucleoprotein [Theile... 36 2.4
gb|AAQ20083.1| stromal RNA regulating factor [Homo sapiens] 36 2.4
dbj|BAC37152.1| unnamed protein product [Mus musculus] 36 2.4
emb|CAF89932.1| unnamed protein product [Tetraodon nigrovir... 36 2.4
ref|NP_190834.1| RNA binding / nucleic acid binding [Arabid... 36 2.4
ref|NP_198191.2| RNA binding / nucleic acid binding [Arabid... 36 2.4
dbj|BAE62863.1| unnamed protein product [Aspergillus oryzae] 36 3.2
gb|EAL32810.1| GA10331-PA [Drosophila pseudoobscura] 36 3.2
gb|AAN41644.1| putative RNA binding protein RB-1 [Mus muscu... 36 3.2
ref|XP_641693.1| hypothetical protein DDB0205840 [Dictyoste... 36 3.2
ref|XP_886886.1| PREDICTED: similar to RNA-binding protein ... 36 3.2
ref|XP_886844.1| PREDICTED: similar to RNA-binding protein ... 36 3.2
emb|CAH89770.1| hypothetical protein [Pongo pygmaeus] 36 3.2
>ref|NP_910157.1| putative small nuclear ribonucleoprotein U1A [Oryza sativa]
Length = 253
Score = 385 bits (989), Expect = e-105
Identities = 193/236 (81%), Positives = 205/236 (86%)
Frame = +2
Query: 119 PPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 298
PPNVTIY SL AVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 299 EALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDA 478
EALK MQ FPF++K MRIQYAKTKSDIIAKADGTFVPRERRKR DEK EKKQKRE HHD
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM 658
SQ+G+GV AYPGVYGAP L+Q+P AG Q+VMMPEIIVPNNILFVQNLPHETTPMMLQM
Sbjct: 140 --SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQM 197
Query: 659 LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
LFCQYPGFKEVRM+EAKPGIAFVEYGDE QATAAMN+LQ FKITK+NQM+I+YAKK
Sbjct: 198 LFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
Length = 253
Score = 311 bits (797), Expect = 3e-83
Identities = 160/239 (66%), Positives = 187/239 (78%), Gaps = 3/239 (1%)
Frame = +2
Query: 119 PPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 298
PPNVTIY S+ AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+SA+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSAS 79
Query: 299 EALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDA 478
AL++MQGFPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR ++K KK+ ++
Sbjct: 80 NALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQ----- 134
Query: 479 GASQIGMGVT-AYPGVYG-APQLTQIPIAGGQRVMMPEI-IVPNNILFVQNLPHETTPMM 649
++Q GMG+ AY G YG AP +QIP GG + +PE PN+ILFVQNLPH++TPMM
Sbjct: 135 DSNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMM 194
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
LQMLFCQYPGFKEVRMIEAKPGIAF+EYGDE Q+T AM LQ FKIT EN M+ITYAKK
Sbjct: 195 LQMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253
>ref|NP_182280.1| U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding
[Arabidopsis thaliana]
emb|CAA90283.1| U1snRNP-specific protein [Arabidopsis thaliana]
gb|AAM98334.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gb|AAM13340.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gb|AAC62852.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gb|AAL24357.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gb|AAK96567.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
Length = 250
Score = 304 bits (779), Expect = 4e-81
Identities = 157/240 (65%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL AVFSQFGKIL++LAFKT KHKGQAWVVF++ SA
Sbjct: 14 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 73
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+ +M FPFYDK MRIQYAKTKSD++AKADGTFVPRE+RKR +EK K+K++ HHD
Sbjct: 74 STAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHD 133
Query: 476 AGASQIGMGV-TAYPGVYG-APQLTQIPIAGGQRVMMPEI-IVPNNILFVQNLPHETTPM 646
++Q+GM + +AYPGVYG AP L+Q+P GG + MPE PNNILFVQNLPHETTPM
Sbjct: 134 --STQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPM 191
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LQMLFCQY GFKEVRMIEAKPGIAFVE+ DE Q+T AM LQ FKI ++NQM+ITYAKK
Sbjct: 192 VLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
>ref|NP_180585.1| U2B'; RNA binding / nucleic acid binding [Arabidopsis thaliana]
gb|AAC16931.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gb|AAO23633.1| At2g30260 [Arabidopsis thaliana]
Length = 232
Score = 237 bits (605), Expect = 5e-61
Identities = 126/237 (53%), Positives = 161/237 (67%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 6 IPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FPFYDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 66 GHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPN 125
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G +A GV AP GQ E + PNNILF+QNLPHETT MMLQ
Sbjct: 126 TANGPSANGPSANNGV-PAPSFQ----PSGQ-----ETMPPNNILFIQNLPHETTSMMLQ 175
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM LQ FKIT +N MVI++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 235 bits (599), Expect = 3e-60
Identities = 125/237 (52%), Positives = 160/237 (67%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG+ILDV+A KT K +GQAWV F +V +A
Sbjct: 6 IPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
A+++MQ FP YDK MR+QYAK KSD +AKA+GTFVP++++++ +EK E+K++ +
Sbjct: 66 GHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREESQRPN 125
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G +A GV AP GQ E + PNNILF+QNLPHETT MMLQ
Sbjct: 126 TANGPSANGPSANNGV-PAPSFQ----PSGQ-----ETMPPNNILFIQNLPHETTSMMLQ 175
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMI+AKPGIAFVEY D+ QA+ AM LQ FKIT +N MVI++AKK
Sbjct: 176 LLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gb|AAA33847.1| spliceosomal protein
Length = 231
Score = 229 bits (583), Expect = 2e-58
Identities = 123/237 (51%), Positives = 162/237 (68%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN TIY SL +FSQ+G+I+D++A KT K +GQ+WVVF +V +A
Sbjct: 7 IPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFSEVTAA 66
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD IAKA+GT+ +++K+ DEK EK+++ E
Sbjct: 67 SNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTY---DKKKKQDEKVEKRKRTEETPQ 123
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
GA+ G + G A + + P A ++ PNNILF+QNLPHETT MML+
Sbjct: 124 TGAAN-GPRTDSNGGPAAASRQGK-PSA-------QDVAEPNNILFIQNLPHETTSMMLE 174
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGF+EVRMIEAKPGIAFVE+ D+ Q++ AM LQ FKIT +N M ITYAKK
Sbjct: 175 VLFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>gb|AAF82223.1| Strong similarity to a small nuclear ribonucleoprotein U2B'' -
potato from Solanum tuberosum gb|M72892. It contains an
RNA recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene. [Arabidopsis thaliana]
Length = 247
Score = 227 bits (579), Expect = 6e-58
Identities = 123/249 (49%), Positives = 162/249 (65%), Gaps = 12/249 (4%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQI------------PIAGGQRVMMPEIIVPNNILFVQ 619
+ G T G+ A L++I P + MP PNNILF+
Sbjct: 123 TQQPSMPNGATTQNGMPVAISLSRIIPTIQYYLLTDPPFQPSGQDTMP----PNNILFIH 178
Query: 620 NLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKEN 799
NLP ET MMLQ+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT +N
Sbjct: 179 NLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQN 238
Query: 800 QMVITYAKK 826
MV+++AKK
Sbjct: 239 PMVVSFAKK 247
>ref|NP_850936.1| RNA binding / nucleic acid binding [Arabidopsis thaliana]
gb|AAN13038.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
Length = 229
Score = 226 bits (575), Expect = 2e-57
Identities = 121/237 (51%), Positives = 157/237 (66%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ G T G+ P GQ M PNNILF+ NLP ET MMLQ
Sbjct: 123 TQQPSMPNGATTQNGMPVPPFQ-----PSGQDTM-----PPNNILFIHNLPIETNSMMLQ 172
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT +N MV+++AKK
Sbjct: 173 LLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>ref|NP_172177.3| RNA binding / nucleic acid binding [Arabidopsis thaliana]
Length = 228
Score = 226 bits (575), Expect = 2e-57
Identities = 120/237 (50%), Positives = 157/237 (66%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ G T G+ P + MP PNNILF+ NLP ET MMLQ
Sbjct: 123 TQQPSMPNGATTQNGM-------PPPFQPSGQDTMP----PNNILFIHNLPIETNSMMLQ 171
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT +N MV+++AKK
Sbjct: 172 LLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228
>gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
Length = 228
Score = 225 bits (574), Expect = 2e-57
Identities = 120/237 (50%), Positives = 156/237 (65%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN +IY SL +FSQFG++LDV+A KT K +GQAWVVF +V +A
Sbjct: 6 IPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ A+++MQ FPFYDK MRIQYAK+KSD + KA+G+FVP+E++ + +EK E+K+ H +
Sbjct: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEE 122
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ G T G+ P + MP PNNILF+ NLP ET MMLQ
Sbjct: 123 TQQPSMPNGATTQNGM-------PPPFQPSGQDTMP----PNNILFIHNLPIETNSMMLQ 171
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+LF QYPGFKE+RMIEAKPGIAFVEY D+ Q++ AM LQ FKIT N MV+++AKK
Sbjct: 172 LLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPRNPMVVSFAKK 228
>gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
Length = 282
Score = 198 bits (503), Expect = 4e-49
Identities = 122/276 (44%), Positives = 161/276 (58%), Gaps = 41/276 (14%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDA 478
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R R++ KS++ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVMM 580
GA+ +G P V G P +TQ P +A GQ M
Sbjct: 128 GAAAPVVGAVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMP 186
Query: 581 PEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGI 718
P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + I
Sbjct: 187 PQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 719 AFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
AFVE+ +E QA AA ++LQ FKIT+ N M I++AKK
Sbjct: 247 AFVEFDNEVQAGAARDSLQGFKITQNNAMKISFAKK 282
>ref|XP_885291.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
3 [Bos taurus]
Length = 222
Score = 197 bits (501), Expect = 6e-49
Identities = 113/235 (48%), Positives = 146/235 (62%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R K EK++ + A
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDR------KREKRKPKSQETPAA 121
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
+ G A P+ G + + E PN+ILF+ NLP ET +ML ML
Sbjct: 122 KKAVQGGAAA-------------PVVGTVQGPLSE-NPPNHILFLTNLPEETNELMLSML 167
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F Q+PGFKEVR++ + IAFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 168 FNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 222
>ref|XP_885348.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A) isoform 4 [Bos
taurus]
ref|XP_586842.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A) isoform 1 [Bos
taurus]
gb|AAI12545.1| Unknown (protein for MGC:137110) [Bos taurus]
Length = 282
Score = 197 bits (500), Expect = 8e-49
Identities = 122/276 (44%), Positives = 160/276 (57%), Gaps = 41/276 (14%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDA 478
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R R++ KS++ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVMM 580
GA+ +G P V G P +TQ P +A GQ M
Sbjct: 128 GAAAPVVGTVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLPPGAMP 186
Query: 581 PEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGI 718
P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + I
Sbjct: 187 PQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 719 AFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
AFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>ref|XP_533663.2| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A) [Canis familiaris]
Length = 282
Score = 197 bits (500), Expect = 8e-49
Identities = 122/276 (44%), Positives = 160/276 (57%), Gaps = 41/276 (14%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDA 478
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R R++ KS++ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVMM 580
GA+ +G P V G P +TQ P +A GQ M
Sbjct: 128 GAAAPVVGAVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMP 186
Query: 581 PEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGI 718
P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + I
Sbjct: 187 PQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 246
Query: 719 AFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
AFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 247 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>ref|XP_789234.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A), partial
[Strongylocentrotus purpuratus]
Length = 240
Score = 196 bits (498), Expect = 1e-48
Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 14/228 (6%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
SL A+FSQFG+ILD++A KTLK +GQA+V+F D+ SAT AL+ MQGFPFYDK MRI Y K
Sbjct: 13 SLYAIFSQFGQILDIVALKTLKMRGQAFVIFRDITSATSALRSMQGFPFYDKPMRIGYCK 72
Query: 365 TKSDIIAKADGTFVPRERR---KRTDEKSEKKQKREHHHD----AGASQIGMGVTAYPGV 523
TKSD IAK GT+VPRE+R K+ +E + ++ R++ H SQI M
Sbjct: 73 TKSDAIAKMQGTYVPREKRVEKKKVEEPVKGRKNRQNRHADVVIPPPSQIPMPGAPPAAN 132
Query: 524 YGAPQLTQIPIAGGQRVMM----PEIIV---PNNILFVQNLPHETTPMMLQMLFCQYPGF 682
P L ++P+ GQ + P +V PNNILF+ NLP ET +ML++LF Q+ G+
Sbjct: 133 QPPPLLGEMPMQMGQPPIQVPTAPAPVVPDEPNNILFLTNLPEETNELMLEVLFKQFNGY 192
Query: 683 KEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
KEVR++ + IAFVE+ +E Q+ A + LQ FKIT N + I YAKK
Sbjct: 193 KEVRLVPGRHDIAFVEFANEQQSGTAKDALQGFKITPTNTLKIAYAKK 240
>gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gb|AAH08290.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
ref|NP_004587.1| small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A
protein) (U1-A)
emb|CAA29653.1| unnamed protein product [Homo sapiens]
gb|AAA61245.1| U1 snRNP-specific protein A
Length = 282
Score = 196 bits (497), Expect = 2e-48
Identities = 122/277 (44%), Positives = 160/277 (57%), Gaps = 42/277 (15%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHD 475
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R+ KR + E ++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVM 577
GA+ + +G P V G P +TQ P +A GQ M
Sbjct: 128 GGATPV-VGAVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAM 185
Query: 578 MPEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG 715
P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ +
Sbjct: 186 PPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD 245
Query: 716 IAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
IAFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 246 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
>gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide A (predicted) [Rattus
norvegicus]
ref|NP_001008304.1| small nuclear ribonucleoprotein polypeptide A (predicted) [Rattus
norvegicus]
Length = 281
Score = 195 bits (496), Expect = 2e-48
Identities = 122/276 (44%), Positives = 160/276 (57%), Gaps = 41/276 (14%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDA 478
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R R++ KS++ +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVMM 580
GA+ +G A V G P +TQ P +A GQ M
Sbjct: 128 GAAAPVVG--AVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMP 185
Query: 581 PEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGI 718
P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + I
Sbjct: 186 PQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDI 245
Query: 719 AFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
AFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 246 AFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281
>ref|XP_419331.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Gallus
gallus]
Length = 226
Score = 194 bits (493), Expect = 5e-48
Identities = 113/238 (47%), Positives = 148/238 (62%), Gaps = 1/238 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E+RK EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRK------EKKKAKSLEQS 116
Query: 476 AGASQIGMGVTAYPGVYGAPQ-LTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMML 652
A A+ + + GA Q T P Q +P+ PN ILF+ NLP ET MML
Sbjct: 117 ANAANKKI-------IQGATQNSTSAPGTSPQNQQVPD-NPPNYILFLNNLPEETNEMML 168
Query: 653 QMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ +E QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 SMLFNQFPGFKEVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>gb|AAH84107.1| LOC495019 protein [Xenopus laevis]
Length = 223
Score = 192 bits (487), Expect = 3e-47
Identities = 107/237 (45%), Positives = 147/237 (62%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN T+Y SL A+FSQFG ++D++A KT+K +GQ +V+F++++SA
Sbjct: 3 IRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQGFVIFKELSSA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SD++ K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYSKPMRIQYAKTDSDVVLKMKGTFADKEKKK------EKKKAKAQEQA 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A+ + AP +P A Q +P+ PN ILF+ NLP ET MML
Sbjct: 117 ANAANKKPAL--------APNANNVPSA-SQNPQVPD-NPPNYILFLNNLPEETNEMMLS 166
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ +ET+A +A + LQ FKIT N M IT+AKK
Sbjct: 167 MLFNQFPGFKEVRLVPGRHDIAFVEFDNETEAGSARDALQGFKITPSNAMKITFAKK 223
>ref|NP_001016784.1| small nuclear ribonucleoprotein polypeptide A [Xenopus tropicalis]
gb|AAH90598.1| Small nuclear ribonucleoprotein polypeptide A [Xenopus tropicalis]
emb|CAJ82017.1| small nuclear ribonucleoprotein polypeptide A [Xenopus tropicalis]
Length = 282
Score = 191 bits (485), Expect = 4e-47
Identities = 119/283 (42%), Positives = 157/283 (55%), Gaps = 46/283 (16%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++++SA
Sbjct: 6 VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+ MQGFPFYDK MRIQY+K+ SDIIAK GT+V R+R K ++K+K +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDR------KRQEKRKVKGQEA 119
Query: 476 AGASQIGMGVTAYPGVYG-------APQLTQIP----IAG-------------------- 562
G + G PGV G P +TQ P +AG
Sbjct: 120 PGVKKALPGAALLPGVPGQMAGMQNIPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQ 179
Query: 563 -------------GQRVMMPEII--VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRM 697
GQ M I PN+ILF+ NLP ET +ML MLF Q+PGFKEVR+
Sbjct: 180 IPPGGMPHGHLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239
Query: 698 IEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ + IAFVE+ +E QA AA +LQ FKIT+ N M I++AKK
Sbjct: 240 VPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gb|AAH44979.1| Snf-prov protein [Xenopus laevis]
Length = 282
Score = 191 bits (484), Expect = 6e-47
Identities = 121/283 (42%), Positives = 154/283 (54%), Gaps = 46/283 (16%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL A+FSQFG+ILD+L + LK +GQA+V+F++ +SA
Sbjct: 6 VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+ MQGFPFYDK MRIQY+KT SDIIAK GTFV R+R K ++K+K +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDR------KRQEKRKVKVPEV 119
Query: 476 AGASQIGMGVTAYPGVYG-------APQLTQIP----IAG-------------------- 562
G G PGV G P +TQ P +AG
Sbjct: 120 QGVKNAMPGAALLPGVPGQMAAMQNMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQ 179
Query: 563 -------------GQRVMMPEII--VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRM 697
GQ M I PN+ILF+ NLP ET +ML MLF Q+PGFKEVR+
Sbjct: 180 MPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239
Query: 698 IEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ + IAFVE+ +E QA AA +LQ FKIT+ N M I++AKK
Sbjct: 240 VPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>emb|CAA41021.1| U1 A protein [Xenopus laevis]
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A
protein) (U1-A)
Length = 282
Score = 191 bits (484), Expect = 6e-47
Identities = 121/283 (42%), Positives = 154/283 (54%), Gaps = 46/283 (16%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL A+FSQFG+ILD+L + LK +GQA+V+F++ +SA
Sbjct: 6 VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSA 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+ MQGFPFYDK MRIQY+KT SDIIAK GTFV R+R K ++K+K +
Sbjct: 66 TNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDR------KRQEKRKVKVPEV 119
Query: 476 AGASQIGMGVTAYPGVYG-------APQLTQIP----IAG-------------------- 562
G G PGV G P +TQ P +AG
Sbjct: 120 QGVKNAMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQ 179
Query: 563 -------------GQRVMMPEII--VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRM 697
GQ M I PN+ILF+ NLP ET +ML MLF Q+PGFKEVR+
Sbjct: 180 MPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239
Query: 698 IEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ + IAFVE+ +E QA AA +LQ FKIT+ N M I++AKK
Sbjct: 240 VPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>ref|XP_903015.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
2 [Mus musculus]
Length = 230
Score = 190 bits (483), Expect = 8e-47
Identities = 108/237 (45%), Positives = 144/237 (60%), Gaps = 2/237 (0%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY S A+FSQFG+ILD+L ++LK +GQ++V+F++V+S
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHD 475
AL+ MQGFPFY K M IQYAKT SDIIAK GTFV R+R+ KR + EK ++
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQEKPAVKKGCSG 127
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G++ + V PG+ PQ + P PN+ILF+ NLP ET +ML
Sbjct: 128 WGSAPVVGAVQPVPGMPPMPQAPRNP--------------PNHILFLTNLPEETNELMLS 173
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + I FVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 174 MLFTQFPGFKEVRLVPGRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 230
>emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 189 bits (481), Expect = 1e-46
Identities = 115/264 (43%), Positives = 152/264 (57%), Gaps = 30/264 (11%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L + +K KGQA+V+F++V SA+ A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMKGQAFVIFKEVNSASNA 68
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L+ MQGFPFYDK MRIQYAK SDIIAK GT+V R+R+K + + + A A
Sbjct: 69 LRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSGSKKNAQAAA 128
Query: 485 SQIGMGV----TAYPGVYGAPQLTQIP----------------IAGGQR---VMMPEII- 592
+ + GV P + AP++ +P +A GQ MMP +
Sbjct: 129 ASMVAGVPGAMAGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPPGAMMPGQMP 188
Query: 593 ------VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQAT 754
PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IAFVE+ +E QA
Sbjct: 189 QQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAA 248
Query: 755 AAMNNLQSFKITKENQMVITYAKK 826
AA LQ FKIT+ N M I++AKK
Sbjct: 249 AAREALQGFKITQTNAMKISFAKK 272
>ref|NP_067310.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gb|AAH26794.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
dbj|BAB29026.1| unnamed protein product [Mus musculus]
dbj|BAB27510.1| unnamed protein product [Mus musculus]
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B"
Length = 225
Score = 189 bits (481), Expect = 1e-46
Identities = 108/237 (45%), Positives = 143/237 (60%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTMEQA 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A+ G G P +P+ PN ILF+ NLP ET MML
Sbjct: 117 AAAANKKPG-------QGTPNAANTQGTAAPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>ref|XP_925222.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
2 [Mus musculus]
Length = 225
Score = 189 bits (479), Expect = 2e-46
Identities = 108/235 (45%), Positives = 140/235 (59%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY S A+FSQFG+ILD+L ++LK +GQ++V+F++V+S
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
AL+ MQGFPFY K M IQYAKT SDIIAK GTFV R D K EK++ + A
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVER------DHKREKRKPKSQEKPAA 121
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
++ V A V G P + Q P PN+ILF+ NLP ET +ML ML
Sbjct: 122 KKRLAPVVGAVQPVPGMPPMPQAPRN-----------PPNHILFLTNLPEETNELMLSML 170
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F Q+PGFKEVR++ + I FVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 171 FTQFPGFKEVRLVPGRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 225
>gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gb|AAH96648.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gb|AAH94006.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A
protein) (U1-A)
gb|AAC37611.1| small nuclear RNA
Length = 287
Score = 189 bits (479), Expect = 2e-46
Identities = 116/273 (42%), Positives = 154/273 (56%), Gaps = 39/273 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L + +K +GQA+V+F++V SAT A
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHDA 478
L+ MQGFPFYDK MRIQYAKT SDIIAK GT+V R+R+ KR + E ++
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 134
Query: 479 GASQIGMGVTAYPGVYGAPQLTQI--------------------PIAGGQ---RVMMPEI 589
A+ + V PG+ PQ +I +A GQ M P+
Sbjct: 135 AAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 194
Query: 590 IV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 727
++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IAFV
Sbjct: 195 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 254
Query: 728 EYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 255 EFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>ref|XP_342529.1| PREDICTED: similar to hypothetical protein [Rattus norvegicus]
Length = 225
Score = 188 bits (478), Expect = 3e-46
Identities = 108/237 (45%), Positives = 143/237 (60%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTMEQA 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A+ G G P +P+ PN ILF+ NLP ET MML
Sbjct: 117 AAAANKKPG-------QGTPNSANTQGNAAPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 188 bits (477), Expect = 4e-46
Identities = 108/237 (45%), Positives = 142/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTMEQA 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A+ G G P +P+ PN ILF+ NLP ET MML
Sbjct: 117 AAAANKKPG-------QGTPNAANTQGTAAPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ + QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFEYDGQAGAARDALQGFKITPSHAMKITYAKK 225
>ref|NP_001011120.1| hypothetical protein LOC496533 [Xenopus tropicalis]
emb|CAJ82680.1| small nuclear ribonucleoprotein polypeptide B [Xenopus tropicalis]
gb|AAH84519.1| Hypothetical LOC496533 [Xenopus tropicalis]
Length = 223
Score = 188 bits (477), Expect = 4e-46
Identities = 107/238 (44%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN T+Y SL A+FSQFG ++D++A KT+K +GQA+V+F++++SA
Sbjct: 3 IRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY+K MRIQYAK+ SD+I K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFADKEKKK------EKKKAKAQEQA 116
Query: 476 AGASQIGMGVTAYP-GVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMML 652
A A+ + + GA Q Q+P PN ILF+ NLP ET MML
Sbjct: 117 ANAANKKPALASNANNAPGASQNQQVPDN-----------PPNYILFLNNLPEETNEMML 165
Query: 653 QMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ +ET+A AA + LQ FKIT + M ITYA K
Sbjct: 166 SMLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223
>ref|XP_857753.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
8 [Canis familiaris]
Length = 250
Score = 187 bits (476), Expect = 5e-46
Identities = 108/237 (45%), Positives = 143/237 (60%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTVEQT 151
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A + G A P Y +P+ PN ILF+ NLP ET MML
Sbjct: 152 ATTASKKPGQPASPSAY-----------------VPD-YPPNYILFLNNLPEETNEMMLS 193
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 194 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 250
>gb|AAH72799.1| MGC80122 protein [Xenopus laevis]
Length = 223
Score = 187 bits (474), Expect = 8e-46
Identities = 104/237 (43%), Positives = 145/237 (61%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN T+Y SL A+FSQFG ++D++A KT+K +GQA+V+F++++SA
Sbjct: 3 IRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSSA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAK+ SD++ K GTF +E++ K +KK K +
Sbjct: 63 TNALRQLQGFPFYSKPMRIQYAKSDSDVVLKMKGTFADKEKK-----KEKKKAKAQEQAA 117
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A++ + A Q TQ+ + PN ILF+ NLP ET MML
Sbjct: 118 NAANKKSAPASNANNAPAASQNTQV-----------QDNPPNYILFLNNLPEETNEMMLS 166
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ +ET+A +A + LQ FKIT + M ITYAKK
Sbjct: 167 MLFNQFPGFKEVRLVPGRHDIAFVEFENETEAGSARDALQGFKITPSHAMKITYAKK 223
>ref|XP_534338.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
1 [Canis familiaris]
Length = 260
Score = 187 bits (474), Expect = 8e-46
Identities = 108/237 (45%), Positives = 143/237 (60%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKT---- 147
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
Q + PG G P +P+ PN ILF+ NLP ET MML
Sbjct: 148 --VEQTATTASKKPG-QGTPNAANTQGNSTPNPQVPD-YPPNYILFLNNLPEETNEMMLS 203
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 204 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 260
>gb|AAH64308.1| Unknown (protein for MGC:77810) [Danio rerio]
ref|NP_955965.1| small nuclear ribonucleoprotein polypeptide A [Danio rerio]
Length = 281
Score = 187 bits (474), Expect = 8e-46
Identities = 116/275 (42%), Positives = 152/275 (55%), Gaps = 41/275 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L +TLK KGQA+V+F+++ SA+ A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNA 68
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L+ MQGFPFYDK MRIQY+K SDIIAK GTFV R+R+K + + +GA
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGKKGGSGA 128
Query: 485 SQIGMGVTAYPGVYGAPQLTQIP----------------------IAGGQRV-------- 574
+ GV A + G P ++Q P +A GQ
Sbjct: 129 TPAMAGVPA--AIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPGAMPPGG 186
Query: 575 --------MMPEII---VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIA 721
MP+ + PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IA
Sbjct: 187 MMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIA 246
Query: 722 FVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
FVE+ +E QA AA LQ FKIT+ N M I++AKK
Sbjct: 247 FVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK 281
>emb|CAB38777.2| SNRPB2 [Homo sapiens]
ref|NP_937863.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
ref|NP_003083.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B"
gb|AAH36737.1| SNRPB2 protein [Homo sapiens]
gb|AAH18022.1| SNRPB2 protein [Homo sapiens]
gb|AAA36796.1| U2 small nuclear ribonucleoprotein B''
Length = 225
Score = 186 bits (472), Expect = 1e-45
Identities = 108/237 (45%), Positives = 142/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKT---- 112
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
Q PG G P +P+ PN ILF+ NLP ET MML
Sbjct: 113 --VEQTATTTNKKPG-QGTPNSANTQGNSTPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>ref|XP_857793.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
9 [Canis familiaris]
Length = 253
Score = 186 bits (471), Expect = 2e-45
Identities = 107/237 (45%), Positives = 141/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EK + K +
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK---EKKKAKTVEQTATT 154
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A + P PQ+ P PN ILF+ NLP ET MML
Sbjct: 155 ASKKPANTQGNSTPN----PQVPDYP--------------PNYILFLNNLPEETNEMMLS 196
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 197 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 253
>gb|AAH59527.1| LOC402896 protein [Danio rerio]
Length = 229
Score = 186 bits (471), Expect = 2e-45
Identities = 106/238 (44%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG+I+D++A KT++ +GQA+V+F+++++A
Sbjct: 12 IRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAA 71
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY+K MRIQYAKT SD+++K GT+ +E++K EKK+K +
Sbjct: 72 TNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKK------EKKKKAQEQAA 125
Query: 476 AGASQIGMG-VTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMML 652
A A++ G V P Q+ P PN ILF+ NLP ET MML
Sbjct: 126 ANANKKPAGAVNTQPPPPATVQIPDNP--------------PNYILFLNNLPEETNEMML 171
Query: 653 QMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ K I+FVE+ E QA A + LQ F+IT M ITYAKK
Sbjct: 172 SMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 229
>emb|CAH93023.1| hypothetical protein [Pongo pygmaeus]
Length = 225
Score = 185 bits (470), Expect = 2e-45
Identities = 107/237 (45%), Positives = 141/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF ++K++KRE
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF------------ADKEKKREKKKA 110
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
Q + PG G P +P+ PN ILF+ NLP ET MML
Sbjct: 111 KTVEQTATTTSKKPG-QGTPNSANTQGNSTPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 169 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>ref|NP_056597.2| small nuclear ribonucleoprotein polypeptide A [Mus musculus]
dbj|BAB29037.1| unnamed protein product [Mus musculus]
Length = 287
Score = 185 bits (469), Expect = 3e-45
Identities = 116/273 (42%), Positives = 156/273 (57%), Gaps = 39/273 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L + +K +GQA+V+F++V SAT A
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDAG 481
L+ MQGFPFYDK MRIQYAKT SDIIAK GT+V R+R R++ KS++ + G
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQVG 134
Query: 482 ASQIGMGVT-AYPGVYGAPQLTQI--------------------PIAGGQ---RVMMPEI 589
+ G++ PG+ PQ +I +A GQ M P+
Sbjct: 135 QLRPWWGLSQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQ 194
Query: 590 IV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 727
++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IAFV
Sbjct: 195 LMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 254
Query: 728 EYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 255 EFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
>ref|XP_857709.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
7 [Canis familiaris]
Length = 262
Score = 184 bits (466), Expect = 7e-45
Identities = 110/243 (45%), Positives = 144/243 (59%), Gaps = 6/243 (2%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++ K +KK K
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK-----KEKKKAKTVEQTA 152
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRV--MMPEIIV----PNNILFVQNLPHET 637
AS+ P P +G + V P V PN ILF+ NLP ET
Sbjct: 153 TTASK-------------KPDPGSNPTSGSRCVEPASPSAYVPDYPPNYILFLNNLPEET 199
Query: 638 TPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITY 817
MML MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITY
Sbjct: 200 NEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITY 259
Query: 818 AKK 826
AKK
Sbjct: 260 AKK 262
>gb|EAA00418.2| ENSANGP00000019197 [Anopheles gambiae str. PEST]
ref|XP_320869.2| ENSANGP00000019197 [Anopheles gambiae str. PEST]
Length = 216
Score = 184 bits (466), Expect = 7e-45
Identities = 109/243 (44%), Positives = 143/243 (58%), Gaps = 6/243 (2%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG+ILD++A+KTLK +GQA+++F++++SA
Sbjct: 3 IRPNHTIYINNLNEKINKVELKKSLYAIFSQFGQILDIVAYKTLKMRGQAFIIFKEISSA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR------TDEKSEKKQK 457
T A++ MQGFPFYDK MRI+Y+KT SD+IAK GTF R +R + T++K KK K
Sbjct: 63 TNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRVKQPKPIQTEDKKAKKLK 122
Query: 458 REHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHET 637
+AG +G T P PN ILF+ NLP ET
Sbjct: 123 -----NAGE----VGATNNSATAEQP--------------------PNQILFLTNLPEET 153
Query: 638 TPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITY 817
MML MLF Q+PGFKEVR++ + IAFVE+ E Q+ AA LQ FKIT + M I++
Sbjct: 154 NEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISF 213
Query: 818 AKK 826
AKK
Sbjct: 214 AKK 216
>ref|XP_356179.3| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
(predicted) isoform 1 [Mus musculus]
Length = 281
Score = 183 bits (464), Expect = 1e-44
Identities = 112/274 (40%), Positives = 153/274 (55%), Gaps = 39/274 (14%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY S A+FSQFG+ILD+L ++LK +GQ++V+F++V+S
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHD 475
AL+ MQGFPFY K M IQYAKT SDIIAK GTFV R+R+ KR + EK ++
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQEKPAVKKGCSG 127
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQI--------------------PIAGGQ---RVMMPE 586
G++ + V PG+ PQ ++ + GQ R M P+
Sbjct: 128 WGSAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPPQ 187
Query: 587 IIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAF 724
++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + I F
Sbjct: 188 QLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDIDF 247
Query: 725 VEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
VE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 248 VEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 281
>ref|XP_857629.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
5 [Canis familiaris]
Length = 251
Score = 183 bits (464), Expect = 1e-44
Identities = 106/237 (44%), Positives = 142/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKT---- 147
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
Q + PG + + +P PN ILF+ NLP ET MML
Sbjct: 148 --VEQTATTASKKPGQVRWTKSSVVP-----------DYPPNYILFLNNLPEETNEMMLS 194
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 195 MLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 251
>ref|NP_511045.1| sans fille CG4528-PA [Drosophila melanogaster]
gb|AAL29039.1| LD45302p [Drosophila melanogaster]
gb|AAF46017.1| CG4528-PA [Drosophila melanogaster]
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1-A)
(Sex determination protein snf)
gb|AAA28903.1| nuclear protein
gb|AAA28441.1| small nuclear ribonucleoprotein
Length = 216
Score = 182 bits (461), Expect = 3e-44
Identities = 106/242 (43%), Positives = 139/242 (57%), Gaps = 7/242 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD++A KTLK +GQA+V+F+++ SA+
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR-------TDEKSEKKQKR 460
AL+ MQGFPFYDK M+I Y+K+ SDI+AK GTF R ++ + TDEK +KK+K
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKP 124
Query: 461 EHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETT 640
++ + T P PN ILF+ NLP ET
Sbjct: 125 SSAENSNPN----AQTEQP--------------------------PNQILFLTNLPEETN 154
Query: 641 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYA 820
MML MLF Q+PGFKEVR++ + IAFVE+ E Q+ AA LQ FKIT + M IT+A
Sbjct: 155 EMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFA 214
Query: 821 KK 826
KK
Sbjct: 215 KK 216
>ref|XP_912677.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Mus
musculus]
Length = 224
Score = 181 bits (460), Expect = 4e-44
Identities = 112/234 (47%), Positives = 139/234 (59%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A FSQFG+ILD+L ++LK + QA+V+F++V SAT A
Sbjct: 12 NHTIYINNLNEKIKKDELKKSLYAFFSQFGQILDILVSRSLKMRSQAFVIFKEVTSATNA 71
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R K EK++ + A
Sbjct: 72 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMTGTFVERDR------KGEKRKPKSQETPAAK 125
Query: 485 SQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 664
+ G A V GA Q P+ G MP P ILF N P ET +ML M F
Sbjct: 126 KAVQGGAAA--PVVGAVQ----PVPG-----MP----PAIILFFTNQPEETNELMLSMFF 170
Query: 665 CQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
Q+P FKEV +I + IAFVE+ +E QA AA++ LQ FKIT+ N M I++AKK
Sbjct: 171 TQFPVFKEVHLIPGRHDIAFVEFDNEVQAGAAIDALQGFKITQNNAMKISFAKK 224
>ref|XP_636725.1| hypothetical protein DDB0187919 [Dictyostelium discoideum]
gb|EAL63221.1| hypothetical protein DDB0187919 [Dictyostelium discoideum]
Length = 241
Score = 180 bits (457), Expect = 8e-44
Identities = 98/238 (41%), Positives = 142/238 (59%), Gaps = 3/238 (1%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L +FS++G IL+++ K+LK +GQA++VF+D+ SA
Sbjct: 8 IPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSA 67
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEK--SEKKQKREHH 469
+ AL+ M GF F D+ M+IQY K+KSD ++K DGT++ ++R + ++K S KKQ R+
Sbjct: 68 SNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKKGSNKKQDRKST 127
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIP-IAGGQRVMMPEIIVPNNILFVQNLPHETTPM 646
Q PG + T P + G + P PN LFV+NLP + M
Sbjct: 128 GQQQQQQ------KRPGAPTSTTSTTSPTTSNGTVSLQPRDDPPNKTLFVENLPDKCDSM 181
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYA 820
ML MLF Q+ GFKEV M+E+K GIAF+E+ DE ++ AM NLQ FK+T E MV+++A
Sbjct: 182 MLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>ref|XP_536409.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Canis
familiaris]
Length = 421
Score = 180 bits (457), Expect = 8e-44
Identities = 106/237 (44%), Positives = 140/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 199 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 258
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K G F +E++K EKK+ +
Sbjct: 259 TNALRQLQGFPFYGKPMRIQYAKTHSDIISKMCGAFADKEKKK------EKKKAKT---- 308
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
Q PG G P +P+ PN ILF+ NLP ET MML
Sbjct: 309 --VEQTATTANKKPG-QGTPNAANTQGNSTPNPQVPD-YPPNYILFLNNLPEETNKMMLS 364
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEV ++ + IAFVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 365 MLFNQFPGFKEVCLVPGRHDIAFVEFENDGQAGAAGDALQGFKITPSHAMKITYAKK 421
>ref|XP_857552.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
3 [Canis familiaris]
Length = 301
Score = 180 bits (457), Expect = 8e-44
Identities = 112/265 (42%), Positives = 154/265 (58%), Gaps = 28/265 (10%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK---------RTDEKSEK 448
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K +T + K
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTASK 157
Query: 449 KQKR------------EHHHDAGASQIGMGVTAY------PGVYGA-PQLTQIPIAGGQR 571
K + ++ + +GM +A PG G+ P L + A
Sbjct: 158 KPGQVRWTKVPWFVGVKNMMEMSVFHLGMQFSAAFGPGCDPGDPGSSPTLGSLHGACFSS 217
Query: 572 VMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQA 751
+P+ PN ILF+ NLP ET MML MLF Q+PGFKEVR++ + IAFVE+ ++ QA
Sbjct: 218 ACVPDY-PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 276
Query: 752 TAAMNNLQSFKITKENQMVITYAKK 826
AA + LQ FKIT + M ITYAKK
Sbjct: 277 GAARDALQGFKITPSHAMKITYAKK 301
>ref|XP_857667.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
6 [Canis familiaris]
Length = 297
Score = 180 bits (456), Expect = 1e-43
Identities = 112/265 (42%), Positives = 151/265 (56%), Gaps = 28/265 (10%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK---------RTDEKSEK 448
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K +T + K
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTASK 157
Query: 449 KQKREH--------HHDAG--ASQIGMGVTAYP-------GVYGAPQLTQIPIAGGQRVM 577
K + HD G S G P +G P +P+ +
Sbjct: 158 KPGQVRWTKVPWFVGHDPGDPGSNPTSGSRDPPYCFPQWLDQFGFPPTVVLPLQ-----L 212
Query: 578 MPEI--IVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQA 751
P++ PN ILF+ NLP ET MML MLF Q+PGFKEVR++ + IAFVE+ ++ QA
Sbjct: 213 TPDVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 272
Query: 752 TAAMNNLQSFKITKENQMVITYAKK 826
AA + LQ FKIT + M ITYAKK
Sbjct: 273 GAARDALQGFKITPSHAMKITYAKK 297
>ref|XP_358059.4| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
[Mus musculus]
Length = 257
Score = 180 bits (456), Expect = 1e-43
Identities = 108/236 (45%), Positives = 138/236 (58%), Gaps = 2/236 (0%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L ++LK +GQ +V+F++V AT A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNA 68
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L+ M GFPFYDK MRIQYAKT SDIIAK GTFV R D K EK++ + A
Sbjct: 69 LRSMLGFPFYDKPMRIQYAKTDSDIIAKMKGTFVER------DYKGEKRKPKSQETPAAK 122
Query: 485 SQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEII--VPNNILFVQNLPHETTPMMLQM 658
+ G PG QL GQ P + PN+ILF+ NLP ET +ML M
Sbjct: 123 KGLAPGQIP-PGAMPPQQLMP-----GQMPPAPPLSENPPNHILFLTNLPEETNELMLSM 176
Query: 659 LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
LF Q+ GFKE ++ + IAFVE+ +E QA AA++ LQ FKIT+ N M I++ KK
Sbjct: 177 LFTQFRGFKEAGLVPGRLDIAFVEFDNEVQAGAALDALQGFKITQNNAMKISFVKK 232
>emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 179 bits (453), Expect = 2e-43
Identities = 104/237 (43%), Positives = 141/237 (59%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+ SQFG+I+D++A KT+K +GQA+V+F+++ +A
Sbjct: 3 IRPNHTIYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTAA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY+K MRIQYAKT S++IAK GT+ +E++K K++K+
Sbjct: 63 TNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKK-------KEKKKAQELP 115
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A + V A P A Q+ P PN ILF+ NLP ET MML
Sbjct: 116 ANQMKKAAVVPAVPLHSPAAQVPDNP--------------PNYILFLTNLPEETNEMMLS 161
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ K IAFVE+ + QA A + LQ F+IT M IT+AKK
Sbjct: 162 MLFNQFPGFKEVRLVPGKHDIAFVEFESDLQAGVAKDALQGFRITATCAMKITFAKK 218
>gb|EAL32469.1| GA18235-PA [Drosophila pseudoobscura]
Length = 216
Score = 179 bits (453), Expect = 2e-43
Identities = 106/244 (43%), Positives = 139/244 (56%), Gaps = 7/244 (2%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY SL A+FSQFG+ILD++A KTLK +GQA+VVF+++ SA
Sbjct: 3 VRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGSA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR-------TDEKSEKKQ 454
+ AL+ MQGFPFYDK MRI Y+K SDI+AK GTF R ++ + D+K +KK+
Sbjct: 63 SNALRTMQGFPFYDKPMRIAYSKCDSDIVAKLKGTFKERPKKVKPPKPTPGIDDKKDKKK 122
Query: 455 KREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHE 634
K ++ + T+ P PN ILF+ NLP E
Sbjct: 123 KPVTTENSNPN----------------TQTEQP--------------PNQILFLTNLPEE 152
Query: 635 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVIT 814
T MML MLF Q+PGFKEVR++ + IAFVE+ E Q+ AA LQ FKIT + M IT
Sbjct: 153 TNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKIT 212
Query: 815 YAKK 826
+AKK
Sbjct: 213 FAKK 216
>ref|XP_897710.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
[Mus musculus]
Length = 269
Score = 179 bits (453), Expect = 2e-43
Identities = 107/236 (45%), Positives = 137/236 (58%), Gaps = 2/236 (0%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L ++LK +GQ +V+F++V AT A
Sbjct: 12 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNA 71
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L M GFPFYDK MRIQY KT+SD IAK GTFV R D K EK++ + A
Sbjct: 72 LWSMLGFPFYDKPMRIQYTKTESDNIAKMKGTFVER------DHKGEKRKPKSQETPAAT 125
Query: 485 SQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEII--VPNNILFVQNLPHETTPMMLQM 658
+ + G PG QL GQ P + PN+ILF+ NLP ET +ML M
Sbjct: 126 TGLAPGQIP-PGAMPPQQLMP-----GQMPPAPPLSENPPNHILFLTNLPEETNELMLSM 179
Query: 659 LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
LF Q+PGFKE ++ IAFVE+ +E QA AA++ LQ FKIT+ N M I++ KK
Sbjct: 180 LFTQFPGFKEAHLVPGCHDIAFVEFDNEVQAGAALDALQGFKITQNNAMKISFVKK 235
>ref|XP_925226.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
(predicted) isoform 3 [Mus musculus]
Length = 230
Score = 178 bits (452), Expect = 3e-43
Identities = 106/237 (44%), Positives = 143/237 (60%), Gaps = 2/237 (0%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY S A+FSQFG+ILD+L ++LK +GQ++V+F++V+S
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRE-RRKRTDEKSEKKQKREHHHDA 478
AL+ MQGFPFY K M IQYAKT SDIIAK GTFV R+ +R++ KS++K +
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKRLFR 127
Query: 479 GASQIGMGVTAYPG-VYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
S+ PG + A L++ P PN+ILF+ NLP ET +ML
Sbjct: 128 IPSRAMPPQQLIPGQMPHAQPLSENP--------------PNHILFLTNLPEETNELMLS 173
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR++ + I FVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 174 MLFTQFPGFKEVRLVPGRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 230
>ref|XP_911984.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
isoform 1 [Mus musculus]
Length = 288
Score = 177 bits (449), Expect = 7e-43
Identities = 114/281 (40%), Positives = 150/281 (53%), Gaps = 46/281 (16%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY S A+FSQFG+ILD+L ++LK +GQ++V+F++V+S
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRE--RRKRTDEKSEKKQKREHHHD 475
AL+ MQGFPFY K M IQYAKT SDIIAK GTFV R+ R KR + EK ++
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKRLFR 127
Query: 476 AGASQ----IGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ-- 568
G + V A V G P + Q P + GQ
Sbjct: 128 VGQLPPWWVLAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIP 187
Query: 569 -RVMMPEIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
R M P+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++
Sbjct: 188 SRAMPPQQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVP 247
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ I FVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 248 GRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 288
>ref|XP_857593.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
4 [Canis familiaris]
Length = 309
Score = 176 bits (446), Expect = 1e-42
Identities = 110/275 (40%), Positives = 148/275 (53%), Gaps = 38/275 (13%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EK + K +
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK---EKKKAKTVEQTATT 154
Query: 476 AGASQIGMGVTAY--------------------PGVYG--APQLTQIPIAGGQRVMMPEI 589
A + G + PG + P +P++ V P
Sbjct: 155 ASKKESLGGAAVWRLTLAQGMILETRDRIPRQAPGAWSLLLPLPMSLPLSLSLSVDPPYC 214
Query: 590 I----------------VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIA 721
PN ILF+ NLP ET MML MLF Q+PGFKEVR++ + IA
Sbjct: 215 FPQWLDQFGFPPTVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIA 274
Query: 722 FVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
FVE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 275 FVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 309
>ref|XP_860797.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1-A) (Sex determination protein snf)
isoform 3 [Canis familiaris]
Length = 229
Score = 175 bits (444), Expect = 3e-42
Identities = 105/235 (44%), Positives = 133/235 (56%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+IL +L ++LK +GQA+V+F++V+ AT
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFKEVSRATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
AL+ MQGFPFYDK M IQYAKT SDIIAK GTFV R R ++ ++
Sbjct: 68 ALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFVSRTASGRRGSLRARRPQQPRRQ--- 124
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
PG QL + Q + PN+ LF+ NLP ET +ML ML
Sbjct: 125 -------CRIPPGAMPPQQLMPGQMPPAQPLSENP---PNHFLFLTNLPEETNELMLSML 174
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F Q+PGFKEVR+ IAFVE+ +E QA A N LQ FKIT+ N M I++AKK
Sbjct: 175 FNQFPGFKEVRLDPGWHDIAFVEFDNEVQAEDARNALQGFKITQNNAMKISFAKK 229
>ref|XP_857512.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
2 [Canis familiaris]
Length = 308
Score = 174 bits (441), Expect = 6e-42
Identities = 112/274 (40%), Positives = 149/274 (54%), Gaps = 37/274 (13%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 38 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 97
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EK + K +
Sbjct: 98 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK---EKKKAKTVEQTATT 154
Query: 476 AGASQIGMGVTAYPGVYG---------APQL---------TQIPIAGGQ----------- 568
A + T P G AP P +G +
Sbjct: 155 ASKKPGQVRWTKVPWFVGGIPGWRSGLAPDFGPGHDPGDPGSNPTSGSRDPPYCFPQWLD 214
Query: 569 -----RVMMPEII---VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAF 724
+P+ I PN ILF+ NLP ET MML MLF Q+PGFKEVR++ + IAF
Sbjct: 215 QFGFPPTQIPKEIQHQPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAF 274
Query: 725 VEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
VE+ ++ QA AA + LQ FKIT + M ITYAKK
Sbjct: 275 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 308
>ref|XP_890109.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Mus
musculus]
Length = 222
Score = 173 bits (438), Expect = 1e-41
Identities = 105/237 (44%), Positives = 136/237 (57%), Gaps = 3/237 (1%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A FSQFG+ILD+L ++LK + QA+V+F++V SAT A
Sbjct: 12 NHTIYINNLNEKIKKDELKKSLYAFFSQFGQILDILVSRSLKMRSQAFVIFKEVTSATNA 71
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
L+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R K EK++ + A
Sbjct: 72 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMTGTFVERDR------KGEKRKPKSQETPAAK 125
Query: 485 SQIGMGVTA---YPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ G A P + +P++ I ILF N P ET +ML
Sbjct: 126 KAVQGGAAAPCRLPSL--SPRIHAI------------------ILFFTNQPEETNELMLS 165
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
M F Q+P FKEV ++ + IAFVE+ +E QA AA++ LQ FKIT+ N M I++AKK
Sbjct: 166 MFFTQFPVFKEVHLVPGRHDIAFVEFDNEVQAGAAIDALQGFKITQNNAMKISFAKK 222
>ref|XP_484200.3| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
[Mus musculus]
Length = 318
Score = 172 bits (437), Expect = 2e-41
Identities = 111/273 (40%), Positives = 147/273 (53%), Gaps = 39/273 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L ++LK +GQ +V+F++V AT A
Sbjct: 12 NHTIYINNLNEKIKNDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNA 71
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR--KRTDEKSEKKQKREHHHDA 478
L M GFPFYDK MRIQY KT+SD IAK GTFV R+ + KR + E ++
Sbjct: 72 LWSMLGFPFYDKPMRIQYTKTESDNIAKMKGTFVERDHKGEKRKPKSQETPAAKKAVQGG 131
Query: 479 GASQIGMGVTAYPGVYGAPQLTQI-----------PIAG---------GQ---RVMMPEI 589
A+ + V PG+ PQ +I P AG GQ M P+
Sbjct: 132 AAAPVVGAVQPVPGMPPMPQAPRIMHHVPGQPPYMPPAGMIPPTGLAPGQIPPGAMPPQQ 191
Query: 590 IV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 727
++ PN+ILF+ NLP ET +ML MLF Q+PGFKE ++ IAFV
Sbjct: 192 LMPGQMPPAPPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEAHLVPGCHDIAFV 251
Query: 728 EYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E+ +E QA AA++ LQ FKIT+ N M I++ KK
Sbjct: 252 EFDNEVQAGAALDALQGFKITQNNAMKISFVKK 284
>ref|XP_547687.2| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1-A) (Sex determination protein snf)
isoform 1 [Canis familiaris]
Length = 215
Score = 170 bits (430), Expect = 1e-40
Identities = 106/235 (45%), Positives = 130/235 (55%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+IL +L ++LK +GQA+V+F++V+ AT
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFKEVSRATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
AL+ MQGFPFYDK M IQYAKT SDIIAK GTFV R
Sbjct: 68 ALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFVSRTA------------------SLA 109
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
QI PG QL + Q + PN+ LF+ NLP ET +ML ML
Sbjct: 110 PGQIP------PGAMPPQQLMPGQMPPAQPLSENP---PNHFLFLTNLPEETNELMLSML 160
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F Q+PGFKEVR+ IAFVE+ +E QA A N LQ FKIT+ N M I++AKK
Sbjct: 161 FNQFPGFKEVRLDPGWHDIAFVEFDNEVQAEDARNALQGFKITQNNAMKISFAKK 215
>ref|XP_850163.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
isoform 2 [Canis familiaris]
Length = 217
Score = 168 bits (426), Expect = 3e-40
Identities = 104/237 (43%), Positives = 131/237 (55%), Gaps = 2/237 (0%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+IL +L ++LK +GQA+V+F++V+ AT
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFKEVSRATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
AL+ MQGFPFYDK M IQYAKT SDIIAK GTF R+ R
Sbjct: 68 ALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFPRRQCR-------------------- 107
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEII--VPNNILFVQNLPHETTPMMLQ 655
V P +G + + GQ + PN+ LF+ NLP ET +ML
Sbjct: 108 -------VGPPPLWWGLSRALSRQLMPGQMPPAQPLSENPPNHFLFLTNLPEETNELMLS 160
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+PGFKEVR+ IAFVE+ +E QA A N LQ FKIT+ N M I++AKK
Sbjct: 161 MLFNQFPGFKEVRLDPGWHDIAFVEFDNEVQAEDARNALQGFKITQNNAMKISFAKK 217
>gb|AAT09091.1| small nuclear ribonucleoprotein [Bigelowiella natans]
Length = 227
Score = 168 bits (425), Expect = 4e-40
Identities = 97/239 (40%), Positives = 134/239 (56%), Gaps = 2/239 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN TIY +L FSQFG IL+V A K +GQAW+VF+D++ A
Sbjct: 7 VRPNQTIYIQNLNEKLKRDELRINLYHAFSQFGNILEVFASKKGNKRGQAWIVFDDLSGA 66
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRT--DEKSEKKQKREHH 469
T++++ MQ F+ K MR+ YAK KSDII+K DG++VPRE+RK D K E K ++
Sbjct: 67 TKSVRGMQNVDFFGKKMRLSYAKEKSDIISKRDGSYVPREKRKMNSGDMKIEPKVQKT-- 124
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMM 649
A A+ G G P + PN ILF +NLP + T M
Sbjct: 125 -TAVATAKGEGA---------------PAMETDEPEEEDSSPPNKILFARNLPPQATKKM 168
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
L+ LF QY GFKEVR+++ KP IAF+E+ D ++ A LQ+FKIT +N M +T+AK+
Sbjct: 169 LETLFKQYDGFKEVRLVDGKPDIAFIEFNDAQESALAKEGLQNFKITSQNAMKLTFAKQ 227
>ref|XP_393440.2| PREDICTED: similar to ENSANGP00000019197 [Apis mellifera]
Length = 230
Score = 164 bits (416), Expect = 5e-39
Identities = 104/244 (42%), Positives = 139/244 (56%), Gaps = 7/244 (2%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG+ILD++A KTLK +GQA+V+ +
Sbjct: 3 IRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVILRKLL-V 61
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR-----TDEKSEKKQKR 460
+ L YDK MRIQYAKT SDIIAK GT+ R ++ + DE++++ +KR
Sbjct: 62 PQMLYDQCKDSHYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKKR 121
Query: 461 EHHHDAGASQIGM--GVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHE 634
+ QIG GV +PG+ T +P PN ILF+ NLP E
Sbjct: 122 AKEQAKHSQQIGYHTGVQQHPGLVN----TAVPEQP-----------PNQILFLTNLPDE 166
Query: 635 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVIT 814
T+ MML MLF Q+PGFKEVR++ + IAFVE+ +E Q+ AA + LQ FKIT + M I+
Sbjct: 167 TSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKIS 226
Query: 815 YAKK 826
+AKK
Sbjct: 227 FAKK 230
>gb|ABA43713.1| SNF [Bombyx mori]
Length = 209
Score = 163 bits (412), Expect = 1e-38
Identities = 100/209 (47%), Positives = 125/209 (59%), Gaps = 4/209 (1%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG+ILD++A KTLK +GQA+V+F++++SA
Sbjct: 5 IRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSA 64
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR----KRTDEKSEKKQKRE 463
T AL+ MQGFPFYDK MRIQY+K SDIIAK+ GTF R +R K TD+ +KK K
Sbjct: 65 TVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLPKGTDDGKKKKNKDP 124
Query: 464 HHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTP 643
+ IG G+ PG I P PN ILF+ NLP ET+
Sbjct: 125 ------SRLIGHGI---PGA---------GILNNVNAEQP----PNQILFLTNLPDETSE 162
Query: 644 MMLQMLFCQYPGFKEVRMIEAKPGIAFVE 730
MML MLF Q+PGFKEVR++ + IAFVE
Sbjct: 163 MMLSMLFNQFPGFKEVRLVPNRHDIAFVE 191
>ref|XP_354985.4| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A) [Mus musculus]
ref|XP_918637.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A) [Mus musculus]
Length = 275
Score = 159 bits (403), Expect = 1e-37
Identities = 112/275 (40%), Positives = 149/275 (54%), Gaps = 41/275 (14%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL A+FSQFG+ILD+L +++K +GQA+V+F++V
Sbjct: 12 NDTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSMKMRGQAFVIFKEV------ 65
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDAG 481
+K MQGFPFY K M IQYAKT SDIIAK GTF R+R R++ KS++ + G
Sbjct: 66 MKPMQGFPFY-KPMHIQYAKTDSDIIAKMKGTFEERDRKREKRKPKSQETPAAKKAVQGG 124
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIP-----------------------IAGGQ---RVMMP 583
A+ +G A V G P + Q P +A GQ M P
Sbjct: 125 AAAPMVG--AVQPVLGMPPMPQAPRVMHHTLGQSPYMPPPDMIPPPGLAPGQILPGAMPP 182
Query: 584 EIIV--------------PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIA 721
+ ++ PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IA
Sbjct: 183 QQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--RHDIA 240
Query: 722 FVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
FVE+ +E QA AA + LQ FKIT+ N M I+ AKK
Sbjct: 241 FVEFDNEVQAGAARDALQGFKITQNNAMKISLAKK 275
>emb|CAE68286.1| Hypothetical protein CBG13971 [Caenorhabditis briggsae]
Length = 206
Score = 156 bits (395), Expect = 1e-36
Identities = 94/237 (39%), Positives = 130/237 (54%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN T+Y SL AVF QFG+ILDV+ F+TLK +GQA ++F ++ A
Sbjct: 4 IQPNSTLYINNLNEKIKIDELRKSLFAVFKQFGEILDVMCFRTLKMRGQAHIIFAEIPHA 63
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A + + GFPFY+K M+IQ+A+ +D IAK GT+V R + K EK +KK K + D
Sbjct: 64 TAAKEALSGFPFYEKPMKIQFAREDADRIAKEKGTYVER-KPKYMSEKVQKKPKSK-KRD 121
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
AG G AP PN ILF NLP T ML+
Sbjct: 122 AG------------GEGPAP--------------------PNKILFCTNLPDSATAEMLE 149
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
++F Q+PG K++RM+ +PGIAFVE+ ++ A A L +F+I+ E+ M + YAKK
Sbjct: 150 IMFNQFPGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>ref|XP_512674.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
snRNP protein A) (U1A protein) (U1-A) [Pan troglodytes]
Length = 296
Score = 154 bits (388), Expect = 8e-36
Identities = 106/291 (36%), Positives = 148/291 (50%), Gaps = 56/291 (19%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKS-----------DIIAKADGTFVPR-----ERRKRTD 433
AL+ MQGFPFYDK M + + +++ D P +R KR
Sbjct: 68 ALRSMQGFPFYDKPMWCHLSSLQPLPPGFKRFFCLSLLSSWDYRCAPPCPAKIQREKRKP 127
Query: 434 EKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIP-------------------- 553
+ E ++ GA+ + +G P V G P +TQ P
Sbjct: 128 KSQETPATKKAVQGGGAAPV-VGAVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 185
Query: 554 ---IAGGQ---RVMMPEIIVP--------------NNILFVQNLPHETTPMMLQMLFCQY 673
+A GQ M P+ ++P N+ILF+ NLP ET +ML MLF Q+
Sbjct: 186 PPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF 245
Query: 674 PGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
PGFKEVR++ + IAFVE+ +E QA AA + LQ FKIT+ N M I++AKK
Sbjct: 246 PGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 296
>gb|AAA98032.2| Rnp (rrm rna binding domain) containing protein 2 [Caenorhabditis
elegans]
ref|NP_500504.1| RNP (RRM RNA binding domain) containing family member (rnp-2)
[Caenorhabditis elegans]
Length = 206
Score = 153 bits (386), Expect = 1e-35
Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 2/239 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ PN T+Y SL AVF QFG+I+ V+ F+TLK +GQA V+F+++ +A
Sbjct: 4 VAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAA 63
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDE--KSEKKQKREHH 469
+ A + + GFPFY+K MRIQ+A+ SD++A+ GT++ RE + +++ K K +K+E+
Sbjct: 64 SAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKILKKPKSRKKENG 123
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMM 649
D A PN ILF NLP T M
Sbjct: 124 GDGPAP------------------------------------PNKILFCTNLPDSATAEM 147
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
L+++F Q+ G K++RM+ +PGIAFVE+ ++ A A L +FKI+ E+ M + YAKK
Sbjct: 148 LEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
>gb|EAR82989.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 270
Score = 152 bits (384), Expect = 2e-35
Identities = 85/234 (36%), Positives = 135/234 (57%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y L +F QFG+ILD++ K+ +GQAW++F+D+ +AT
Sbjct: 51 PKETLYINNLNDKINQEDMKYGLYFLFQQFGEILDIILKKSNTLRGQAWIIFKDITAATN 110
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
A K + GF F+DK ++I +AK +S+I+ K +G +VP++++K+ + + KK G
Sbjct: 111 AKKNLNGFLFFDKELKINFAKQRSEILDKLEGRWVPKKKQKKENNNNAKK--------VG 162
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
+I G QL QIP+ + E+ PNN+L +++LP T +L+ L
Sbjct: 163 EQEI--GTEQKEQQQQKQQLQQIPL----NIQQNELNQPNNVLILEDLPSFVTTDILKAL 216
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAK 823
F QYPGFKEVR+I A +AFVE+ E +AT A+N LQ+F++T + + + YAK
Sbjct: 217 FGQYPGFKEVRLI-APRKVAFVEFSQEDEATVALNGLQNFQLTPQVFLKLNYAK 269
>ref|XP_850387.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
(predicted) [Canis familiaris]
Length = 233
Score = 151 bits (382), Expect = 4e-35
Identities = 102/246 (41%), Positives = 138/246 (56%), Gaps = 11/246 (4%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++ +SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEASSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEKKQKREHHHDA 478
YAKT SDIIAK GTFV R+R R++ KS++ +
Sbjct: 68 ------------------YAKTDSDIIAKIKGTFVERDRKREKRKPKSQETPAAKKTVQG 109
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIPI-AGGQRVMMPEIIVP---------NNILFVQNLP 628
GA+ +G P AP+ QIP A + +MP + P N+ILF+ NLP
Sbjct: 110 GAAAPVVGALQGPVPDLAPR--QIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP 167
Query: 629 HETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMV 808
ET +M MLF Q+PGFKEVR++ + IAFVE+ +E QA AA + LQ FKIT+ N M
Sbjct: 168 EETNELMPSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 227
Query: 809 ITYAKK 826
I++AKK
Sbjct: 228 ISFAKK 233
>gb|AAW26245.1| SJCHGC05726 protein [Schistosoma japonicum]
Length = 226
Score = 149 bits (376), Expect = 2e-34
Identities = 91/237 (38%), Positives = 133/237 (56%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN T+Y +L +F Q G+++D++A KT+K +GQA+++++D+A A
Sbjct: 3 IRPNHTLYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIACA 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T+A + +QGF + + MR+ YAK S I G V E +KR +E+ EK+++++
Sbjct: 63 TQAYRSLQGFQLFQRPMRVTYAKKDSLQIISLKG--VSAEVQKRREEEREKRKRKKMAQR 120
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A A A + A Q P AG + + PN+ILFV NLP ETT ML
Sbjct: 121 AAA--------AAAALQAANQSVNGP-AGTGGDINALLDQPNHILFVSNLPEETTDAMLT 171
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
MLF Q+ GFKE R A G+ FVEY E+QA AA + + FK+T + M IT+AKK
Sbjct: 172 MLFSQFSGFKEAR--RAAGGVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gb|AAA98033.1| Rnp (rrm rna binding domain) containing protein 3 [Caenorhabditis
elegans]
ref|NP_500505.1| RNP (RRM RNA binding domain) containing family member (rnp-3)
[Caenorhabditis elegans]
Length = 217
Score = 148 bits (373), Expect = 4e-34
Identities = 89/237 (37%), Positives = 127/237 (53%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL VF+QFG+I+ +++F+ K +GQA +VF++V+SA
Sbjct: 4 INPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSA 63
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ AL+ +QGFPFY K MRIQYA+ SD+I++A GTFV + +KS K K+ +
Sbjct: 64 SNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKR------QKSTKIAKKPYEKP 117
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A G +A PQ T P +PNNILF N+P T P +Q
Sbjct: 118 A-----KNGKSAAEPTQKEPQETDGP------------GLPNNILFCSNIPEGTEPEQIQ 160
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+F Q+PG +EVR + AF+EY E + A L +F+IT Q+ + +A K
Sbjct: 161 TIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>emb|CAE68287.1| Hypothetical protein CBG13972 [Caenorhabditis briggsae]
Length = 220
Score = 140 bits (352), Expect = 1e-31
Identities = 84/237 (35%), Positives = 128/237 (54%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL +F+Q+G+I+ +++F+ + +GQA +VF++V+SA
Sbjct: 4 INPNHTIYVNNLNEKVKRDELKRSLHMIFAQYGEIIQLMSFRKERMRGQAHIVFKEVSSA 63
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+ AL+ +QGFPFY K MRIQYA+ SD+IA+A G++V E+R +T ++ KK + +
Sbjct: 64 SNALRALQGFPFYGKPMRIQYAREDSDVIARAKGSYV--EKRAKTTARAAKKPYEKPKN- 120
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G G + T G +PNNILF N+P T P +Q
Sbjct: 121 --------GEKRPEGEEKEKETTAENEGPG---------LPNNILFCSNIPDGTDPDQIQ 163
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+F Q+PG +EVR + AFVEY E + A L +F+IT +Q+ + +A K
Sbjct: 164 HIFGQFPGLREVRWMPNTKDFAFVEYESEDMSEPARQALDNFRITPSHQIKVKFATK 220
>emb|CAA19287.1| SPBC4B4.07c [Schizosaccharomyces pombe]
ref|NP_596424.1| hypothetical protein SPBC4B4.07c [Schizosaccharomyces pombe 972h-]
Length = 249
Score = 134 bits (336), Expect = 9e-30
Identities = 81/235 (34%), Positives = 128/235 (54%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P+ T+Y L +F +GK++DV A KTL+ +GQA+VVF+++ +A+
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASR 83
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
ALK +QG+P Y K M IQY+K+KSDII + + P E R K ++K +RE
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSKSDIIVQRES---PEEIETR---KKDRKNRREMLKRTS 137
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
A Q A + P + A + + +++ PN +L +QN+P E +L +
Sbjct: 138 ALQ----PAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQI 193
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F + GF+EVRM+ + GIAFVEY + +AT A N ++ NQ+ +T+A+K
Sbjct: 194 FEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS-GNQIKVTFARK 247
>ref|XP_657713.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gb|EAA65287.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
Length = 252
Score = 131 bits (329), Expect = 6e-29
Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 8/245 (3%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y +L+ +FS++G IL+++A + LK KGQA++VF++V SA
Sbjct: 10 IPPNPTVYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDNVDSA 69
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A+ + GF +DK M + YAKT+SD + +G E KR + +K++R+ H
Sbjct: 70 TRAIDEVNGFDLFDKPMVLDYAKTRSDATVRREGGDEELEAHKR--RRLAEKERRQAHEA 127
Query: 476 AGA----SQIGMGVTAYPG--VYGAPQLTQIPIAGGQRVMMP-EIIVPNNILFVQNLPHE 634
A + +G PG V A P +G ++P E + PN ILF++ LP
Sbjct: 128 LEAQKKLKRPPVGAPEAPGRPVKAAKGAGLKPTSGAAAAVIPDEYLPPNKILFLRELPDT 187
Query: 635 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMV-I 811
L +F ++ GF+EVR++ + GIAFVEY +E+ A +A + E + + +
Sbjct: 188 ADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGPEGKPIRV 247
Query: 812 TYAKK 826
TY ++
Sbjct: 248 TYQRQ 252
>ref|XP_514523.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Pan
troglodytes]
Length = 173
Score = 131 bits (329), Expect = 6e-29
Identities = 78/185 (42%), Positives = 104/185 (56%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EKK+ +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAKTVEQT 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
A + G G P +P+ PN ILF+ NLP ET MML
Sbjct: 117 AATTNKKPG-------QGTPNSANTQGNSTPNPQVPD-YPPNYILFLNNLPEETNEMMLS 168
Query: 656 MLFCQ 670
MLF Q
Sbjct: 169 MLFNQ 173
>gb|EAS07024.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 241
Score = 130 bits (328), Expect = 7e-29
Identities = 82/242 (33%), Positives = 127/242 (52%), Gaps = 6/242 (2%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+PPN TIY L +FS++G IL++ A K ++ +GQA+VVFE +A A
Sbjct: 28 LPPNNTIYINNLNERISIDDLKQELFKLFSEYGSILEIKAKKNIRMRGQAFVVFEQIACA 87
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRT------DEKSEKKQK 457
+A++ + FY K + + +AKTKSD I K +G + PR+ + + +S KKQK
Sbjct: 88 QKAIEALNRKNFYGKALHLNFAKTKSDAILKREGAYAPRQPKIFNAADFIEERQSNKKQK 147
Query: 458 REHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHET 637
+ A+ + A P +VP++ LF++NLP +
Sbjct: 148 ENLKNKESAT---AKLAAQP------------------------LVPHHTLFLENLPINS 180
Query: 638 TPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITY 817
+++ F +PGFKEVR++ K +AFVEY DE +ATAA+ +LQSFKI + + Y
Sbjct: 181 NTEVIKAFFATFPGFKEVRLVPQK-RVAFVEYEDENKATAALASLQSFKI-GDQTVTANY 238
Query: 818 AK 823
AK
Sbjct: 239 AK 240
>gb|AAW47016.1| RNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_568533.1| RNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
gb|EAL17193.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 285
Score = 122 bits (306), Expect = 3e-26
Identities = 84/237 (35%), Positives = 124/237 (52%), Gaps = 4/237 (1%)
Frame = +2
Query: 116 IPPNV--TIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 289
IP N T+Y +L +F + + ++A ++ +GQA+V F D+
Sbjct: 53 IPDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFSDIE 112
Query: 290 SATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEK-SEKKQKREH 466
SA EA K + FP Y K+++I++AK SD I K G +E + T + EKK KR++
Sbjct: 113 SANEARKDVNEFPLYGKSIQIKFAKGLSDSIVKRKGD--EKEFEEHTKRRLEEKKLKRKN 170
Query: 467 HHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMP-EIIVPNNILFVQNLPHETTP 643
+ +Q + G G P A QR+ MP E + PN++LFVQNLP TT
Sbjct: 171 NPLRQKAQAKLRADTTAGTAG-------PAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTS 223
Query: 644 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVIT 814
L+ +F +PG E+R I AK IAFVE+ DE AT A + L +FKI E +M ++
Sbjct: 224 EDLREVFEVHPGLIEIRTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVS 280
>ref|XP_675204.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
emb|CAH97133.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
berghei]
Length = 192
Score = 122 bits (305), Expect = 3e-26
Identities = 80/235 (34%), Positives = 112/235 (47%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L F +G +LDV+ K+ K +GQA+V+F ++AS+
Sbjct: 6 IPPNQTLYVNNLEEKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASS 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A K ++G PF +K + I YAKTKS II K DGT+ P K K ++++
Sbjct: 66 TLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNP-----------IKNYKPANNYE 114
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+Q LFVQNLP E L+
Sbjct: 115 NNINQF-------------------------------------TLFVQNLPDEINKNALE 137
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYA 820
+LF QYPGF EVR I + +AF+++ AMN LQSFKIT E+ M I+++
Sbjct: 138 ILFNQYPGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFKITPEHPMKISWS 191
>ref|XP_885269.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
(predicted) isoform 2 [Bos taurus]
Length = 163
Score = 121 bits (304), Expect = 4e-26
Identities = 71/143 (49%), Positives = 90/143 (62%), Gaps = 5/143 (3%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER-RKRTDEKSEK--KQKREHHH 472
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R R++ KS++ K+
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 473 DAGASQIG--MGVTAYPGVYGAP 535
A A +G G P V G P
Sbjct: 128 GAAAPVVGTVQGPVPVPWVQGGP 150
>gb|EAQ87968.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 247
Score = 119 bits (299), Expect = 2e-25
Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 7/242 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y +L A+FS++G ++D++A LK KGQA+VVF+ SA
Sbjct: 6 PIATVYVRNLEERVKPEPLKEALRALFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 65
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHD 475
A++ + GF +DK M++ A+T+SD G +R+R EK +KK
Sbjct: 66 AIEDIHGFELFDKPMQLALARTRSDATVMQTGNEEEFDAHKRRRMAEKDKKKALETAEEQ 125
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPI----AGGQRVMMPEIIVPNNILFVQNLPHETTP 643
+ G A G A + AG V+ E + PN ILFVQNLP +
Sbjct: 126 KRLKRPMPGAAAEVGARPAKNARGAGLKSTGAGATAVVPDEYLPPNRILFVQNLPDDFDK 185
Query: 644 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYA 820
L +F ++ GF+EVR + + GIAFVEY E A A N + E M +TY
Sbjct: 186 DALNAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPLKNGEKMMKVTYQ 245
Query: 821 KK 826
++
Sbjct: 246 RQ 247
>pdb|1FHT| Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117, Nmr, 43
Structures
Length = 116
Score = 118 bits (296), Expect = 4e-25
Identities = 61/112 (54%), Positives = 80/112 (71%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQK 457
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV R+R++ +++ K Q+
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR--EKRKPKSQE 116
>ref|XP_753458.1| small nuclear ribonucleoprotein [Aspergillus fumigatus Af293]
gb|EAL91420.1| small nuclear ribonucleoprotein [Aspergillus fumigatus Af293]
Length = 255
Score = 118 bits (296), Expect = 4e-25
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 7/199 (3%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
+L +FS++G I++++A LK KGQA++VF++V SAT A++ + GF +DK M + YAK
Sbjct: 38 ALEEIFSEYGNIVEIVAKTNLKAKGQAFIVFDNVESATRAIEEVNGFELFDKPMVLDYAK 97
Query: 365 TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQI----GMGVTAYPG--VY 526
TKSD +G E KR +EK++K+ H ++ G TA P V
Sbjct: 98 TKSDATVLREGGTEELEVHKRR-RLAEKERKQAHEALEAQKKLKRPPGPADTARPAKTVK 156
Query: 527 GAPQLTQIPIAGGQRVMMP-EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
GA P +G ++P E + PN ILF+++LP L +F ++ GF+EVR++
Sbjct: 157 GAGLK---PTSGAAAAVIPDEYLPPNKILFLRDLPDTADQESLTAIFGRFEGFQEVRLVP 213
Query: 704 AKPGIAFVEYGDETQATAA 760
+ GIAFVEY +E+ A +A
Sbjct: 214 GRKGIAFVEYENESGAISA 232
>ref|XP_728920.1| hypothetical protein PY01195 [Plasmodium yoelii yoelii str. 17XNL]
gb|EAA20485.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 189
Score = 117 bits (294), Expect = 6e-25
Identities = 77/233 (33%), Positives = 106/233 (45%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L F +G +LDV+ K+ K +GQA+V+F ++AS+
Sbjct: 6 IPPNQTLYVNNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASS 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A K ++G PF +K + I YAKTKS II K DGT+ P + K + K
Sbjct: 66 TLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNPIKNYKSANNYENK--------- 116
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+ LFVQNLP E L+
Sbjct: 117 ---------------------------------------INQFTLFVQNLPDEINKNALE 137
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVIT 814
+LF QYPGF EVR I + +AF+++ AMN LQSF IT ++ M I+
Sbjct: 138 ILFNQYPGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFXITPDHPMKIS 189
>emb|CAE85534.1| related to small nuclear ribonucleoprotein snRNP U1A [Neurospora
crassa]
ref|XP_962704.1| hypothetical protein [Neurospora crassa N150]
ref|XP_328740.1| hypothetical protein [Neurospora crassa]
gb|EAA33468.1| hypothetical protein [Neurospora crassa]
Length = 247
Score = 116 bits (290), Expect = 2e-24
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 5/240 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y +L +FS++G ++D++A LK KGQA+VVF+ SA
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSD--IIAKADGTFVPRERRKRTDEKSEKK--QKREHH 469
A+ +QGF ++K M + A+T+SD +I + + +R+R EK +K+ + E
Sbjct: 68 AIDELQGFELFEKPMVVTLARTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEVAEQQ 127
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMM 649
+ G A P + G V+ E + PN ILFVQNLP + T
Sbjct: 128 NRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPDEYLPPNRILFVQNLPDDFTKDD 187
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYAKK 826
L +F ++ GF+EVR + + GIAFVEY E A A N + E M +TY ++
Sbjct: 188 LTTIFSRFDGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKIMKVTYQRQ 247
>ref|XP_384462.1| hypothetical protein FG04286.1 [Gibberella zeae PH-1]
gb|EAA73612.1| hypothetical protein FG04286.1 [Gibberella zeae PH-1]
Length = 242
Score = 115 bits (288), Expect = 3e-24
Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 3/235 (1%)
Frame = +2
Query: 131 TIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALK 310
T+Y +L +FS+FG ++D++A K L+ KGQA++V+++ SA EA++
Sbjct: 9 TVYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAIE 68
Query: 311 RMQGFPFYDKTMRIQYAKTKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGA 484
+ GF +DK M++ A+++SD + G+ + +R R EK ++K + +
Sbjct: 69 EINGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHRQAEKDKRKAEEAAEEQRQS 128
Query: 485 SQIGMGVT-AYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
++ G T P + A ++ E + PN ILFVQNLP + L +
Sbjct: 129 NKRASGATDNRPAKAAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNLPEDYDIEALTSV 188
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
F ++ G +EVR++ + GIAF+EY E A A N + + + +TY ++
Sbjct: 189 FGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNL-GDKPIKVTYQRQ 242
>ref|XP_743519.1| u1 small nuclear ribonucleoprotein a [Plasmodium chabaudi chabaudi]
emb|CAH75488.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium chabaudi]
Length = 444
Score = 114 bits (284), Expect = 9e-24
Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 51/288 (17%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y SL +F+Q+G I D++ K+ KGQAW+V++ + S+
Sbjct: 159 IPPNETLYVKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESS 218
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPR-----------ERRKRTDEKS 442
T+AL +QGF + K M+I Y+ KSD+ K +GTFV R ER ++ E
Sbjct: 219 TKALNALQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIERERKQKEIF 278
Query: 443 EKKQK----------REHHHDA-------GASQIGMGVTAYPGVYGAPQ-----LTQIPI 556
EK Q+ + H+DA SQ+ A + + P+
Sbjct: 279 EKMQQNYFEMQMNQIKAMHNDALDKNKNFDLSQMDKEALIARAQQKANEEKKRKKGEDPL 338
Query: 557 AGGQRVMMPEI------------------IVPNNILFVQNLPHETTPMMLQMLFCQYPGF 682
+P I ++P ILFV+N+ +F + GF
Sbjct: 339 QNNLNYNIPNIHHPQFYAMNAFAQIQANPVIPYRILFVENVDENVNTEAFNDIFKAFSGF 398
Query: 683 KEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E R+I + +AFV+Y DE+ AT+AM LQ +++ + +++ I+YAK+
Sbjct: 399 VEARIIPQR-NVAFVDYTDESSATSAMKALQDYEL-QGSKLKISYAKR 444
>dbj|BAE62906.1| unnamed protein product [Aspergillus oryzae]
Length = 248
Score = 113 bits (282), Expect = 2e-23
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
+L +FS++G ++D++A LK KGQA++VF+ V SA+ A+ + GF +DK M + +AK
Sbjct: 31 ALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESASNAIDEINGFELFDKPMVLDFAK 90
Query: 365 TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLT 544
T+SD +G E KR +EK++K+ H A + + P GAP T
Sbjct: 91 TRSDATVLREGGEDELEAHKRR-RLAEKERKQAHE----ALEAQKKLKRPP---GAPDST 142
Query: 545 Q----------IPIAGGQRVMMP-EIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEV 691
+ P +G ++P E + PN ILF+++LP L +F ++ GF+EV
Sbjct: 143 RPAKTAKGAGLKPTSGATAAVIPDEYLPPNKILFLRDLPDTADQESLTAVFGRFEGFQEV 202
Query: 692 RMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMV-ITYAKK 826
R++ + GIAFVEY +E+ A +A + + + + +TY ++
Sbjct: 203 RLVPGRKGIAFVEYENESGAISAKEATSGMPMGESGKPIRVTYQRQ 248
>ref|XP_701289.1| PREDICTED: hypothetical protein XP_696197 [Danio rerio]
Length = 145
Score = 112 bits (281), Expect = 2e-23
Identities = 70/161 (43%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Frame = +2
Query: 347 RIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG-VTAYPGV 523
RIQYAKT SD+++K GT+ +E++K EKK+K + A A++ G V P
Sbjct: 5 RIQYAKTDSDLVSKMRGTYGDKEKKK------EKKKKAQEQAAANANKKPAGAVNTQPPP 58
Query: 524 YGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
Q+ P PN ILF+ NLP ET MML MLF Q+PGFKEVR++
Sbjct: 59 PATVQIPDNP--------------PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVP 104
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
K I+FVE+ E QA A + LQ F+IT M ITYAKK
Sbjct: 105 GKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 145
>emb|CAD52203.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium falciparum
3D7]
ref|NP_704968.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium falciparum
3D7]
Length = 453
Score = 112 bits (279), Expect = 3e-23
Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 44/281 (15%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y +L +F+ +G+I D++ K+ KGQAWVV++D A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEK-SEKKQK-REHH 469
T+AL +QG+ + K M+I ++ KSDI AK DGTFV R + + +K E++QK +E
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFVERSKEPKKPKKILEREQKQKEIF 290
Query: 470 HDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEII-----------------VP 598
+ + M + + G ++ + I ++ +I +P
Sbjct: 291 EQMHKNYLEMQKNNFNMLNGNKEINKPEIIDLSQMDKQTLIAKAQAKANEDKNKKNEELP 350
Query: 599 NN-------------------------ILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIE 703
NN ILFV+N+ LF Y GF E R+I
Sbjct: 351 NNNIFSSYYQMNNIAPVQNYPVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIP 410
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
+ +AFV++ DET AT AM +Q++++ + +++ I+YAK+
Sbjct: 411 QR-NVAFVDFTDETTATFAMKAVQNYEL-QGSKLKISYAKR 449
>gb|AAH08311.1| Similar to small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 109
Score = 110 bits (275), Expect = 1e-22
Identities = 53/104 (50%), Positives = 74/104 (71%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR 427
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K+
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKK 106
>pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
Length = 101
Score = 110 bits (275), Expect = 1e-22
Identities = 56/95 (58%), Positives = 69/95 (72%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFV 406
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 101
>gb|AAI02329.1| Unknown (protein for IMAGE:7951083) [Bos taurus]
Length = 106
Score = 110 bits (275), Expect = 1e-22
Identities = 53/104 (50%), Positives = 74/104 (71%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR 427
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K+
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKK 106
>pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 110 bits (275), Expect = 1e-22
Identities = 56/95 (58%), Positives = 69/95 (72%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFV 406
AL+ MQGFPFYDK MRIQYAKT SDIIAK GTFV
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 101
>ref|XP_679094.1| U1 small nuclear ribonucleoprotein A [Plasmodium berghei strain
ANKA]
emb|CAH97936.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium berghei]
Length = 371
Score = 110 bits (275), Expect = 1e-22
Identities = 81/288 (28%), Positives = 131/288 (45%), Gaps = 51/288 (17%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y SL +F+Q+G I D++ K+ KGQAW+V++ + S+
Sbjct: 86 IPPNETLYIKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESS 145
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPR-----------ERRKRTDEKS 442
T+AL +QGF + K M+I Y+ KSD+ K +GTF+ R ER K+ E
Sbjct: 146 TKALNSLQGFVLFGKIMQINYSHNKSDVHTKRNGTFIERSKDPKKPKQIIEREKKQKEIF 205
Query: 443 EKKQKR-----------------EHHHDAGASQIGMGVTAYPGVYGA-----PQLTQIPI 556
EK Q+ E + + SQ+ A + + P+
Sbjct: 206 EKMQQNYFEMQINHIKAMHNDELEKNKNFDLSQMDKETLIARAQQKAIEEKKRKKGEDPL 265
Query: 557 AGGQRVMMPEIIVPN------------------NILFVQNLPHETTPMMLQMLFCQYPGF 682
+P I P+ ILFV+N+ +F + GF
Sbjct: 266 QNNANYNIPSIHPPHFYAMNSYAPIQNNPVIPYKILFVENVDENVNTEAFNDIFKAFSGF 325
Query: 683 KEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 826
E R+I + +AFV+Y DE+ AT+AM LQ++++ + +++ I+YAK+
Sbjct: 326 VEARIIPQR-NVAFVDYTDESSATSAMKALQNYEL-QGSKLKISYAKR 371
>gb|AAW78984.1| GekBS138P [Gekko japonicus]
Length = 132
Score = 108 bits (269), Expect = 5e-22
Identities = 55/112 (49%), Positives = 76/112 (67%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN IY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHAIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKK 451
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +E++K EK + K
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK---EKKKAK 111
>emb|CAD52025.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
ref|NP_704882.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 193
Score = 107 bits (266), Expect = 1e-21
Identities = 78/234 (33%), Positives = 106/234 (45%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L F +G I+D+ K+ K +GQA++VF ++AS+
Sbjct: 6 IPPNQTLYVNNLEDKINVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFNNIASS 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T A K ++G F K + I YAKTKS II K +GT+ P K K EH +
Sbjct: 66 TLAYKNLKGKMFLKKNININYAKTKSTIIQKIEGTYNPLLNYK-------SKHNIEHKSN 118
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
+Y L VQNLP E L+
Sbjct: 119 L--------------IY--------------------------TLLVQNLPDEINKNALE 138
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITY 817
+LF QYPGF EVR I K IAFV++ + A +M LQ+FKIT + M I++
Sbjct: 139 ILFNQYPGFYEVRYIPGK-NIAFVDFTAQEHAEISMTGLQNFKITPHHPMKISW 191
>pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
Length = 100
Score = 106 bits (265), Expect = 1e-21
Identities = 54/93 (58%), Positives = 67/93 (72%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGT 400
AL+ MQGFPFYDK MRIQYAKT SDIIAK GT
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGT 100
>dbj|BAB23823.1| unnamed protein product [Mus musculus]
Length = 101
Score = 104 bits (259), Expect = 7e-21
Identities = 51/99 (51%), Positives = 69/99 (69%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPR 412
T AL+++QGFPFY K MRIQYAKT SDII+K GTF +
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADK 101
>pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
Length = 98
Score = 103 bits (256), Expect = 2e-20
Identities = 52/89 (58%), Positives = 65/89 (73%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAK 388
AL+ MQGFPFYDK MRIQYAKT SDIIAK
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
>pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre-Organized C-Terminal Helix
pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre-Organized C-Terminal Helix
pdb|1URN|C Chain C, U1aRNA COMPLEX
pdb|1URN|B Chain B, U1aRNA COMPLEX
pdb|1URN|A Chain A, U1aRNA COMPLEX
Length = 97
Score = 103 bits (256), Expect = 2e-20
Identities = 52/89 (58%), Positives = 65/89 (73%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAK 388
AL+ MQGFPFYDK MRIQYAKT SDIIAK
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 95
>pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
Length = 95
Score = 102 bits (255), Expect = 2e-20
Identities = 52/88 (59%), Positives = 64/88 (72%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FSQFG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIA 385
AL+ MQGFPFYDK MRIQYAKT SDIIA
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIA 95
>gb|AAX27773.2| SJCHGC09182 protein [Schistosoma japonicum]
Length = 239
Score = 102 bits (253), Expect = 4e-20
Identities = 52/99 (52%), Positives = 66/99 (66%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL AVF QFG+ILD++ +TLK +GQA+VVF+D+ SA+
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRER 418
AL+ MQGFP Y+K MRI +AK SD+IAK GTFV R +
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
>ref|XP_726090.1| U1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii str.
17XNL]
gb|EAA17655.1| u1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii]
Length = 508
Score = 101 bits (252), Expect = 5e-20
Identities = 78/267 (29%), Positives = 116/267 (43%), Gaps = 51/267 (19%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y SL +F+Q+G I D++ K+ KGQAW+V++ + S+
Sbjct: 183 IPPNETLYIKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIVYDTIESS 242
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPR-----------ERRKRTDEKS 442
T+AL +QGF + K M+I Y+ KSD+ K +GTFV R ER K+ E
Sbjct: 243 TKALNALQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIEREKKQKEIF 302
Query: 443 EKKQKR-----------------EHHHDAGASQIGMGVTAYPGVYGAPQ-----LTQIPI 556
EK Q+ E + + SQ+ A + + P+
Sbjct: 303 EKMQQNYFEMQINHIKAMHNEGLERNKNFDLSQMDKETLIARAQQKANEEKKRKKGEDPL 362
Query: 557 AGGQRVMMPEIIVP-----NN-------------ILFVQNLPHETTPMMLQMLFCQYPGF 682
+P I P NN ILFV+N+ +F + GF
Sbjct: 363 QNNTNYNIPNIHPPQFYAMNNFAPIQNNPVIPYKILFVENVDENVNTEAFNDIFKAFSGF 422
Query: 683 KEVRMIEAKPGIAFVEYGDETQATAAM 763
E R+I + +AFV+Y DE+ AT+AM
Sbjct: 423 VEARIIPQR-NVAFVDYTDESSATSAM 448
>pdb|1A9N|D Chain D, U2 B''A'RNA TERNARY COMPLEX
pdb|1A9N|B Chain B, U2 B''A'RNA TERNARY COMPLEX
Length = 96
Score = 99.8 bits (247), Expect = 2e-19
Identities = 49/94 (52%), Positives = 66/94 (70%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN TIY SL A+FSQFG ++D++A KT+K +GQA+V+F+++ S+
Sbjct: 3 IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADG 397
T AL+++QGFPFY K MRIQYAKT SDII+K G
Sbjct: 63 TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRG 96
>pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme
Length = 95
Score = 99.0 bits (245), Expect = 3e-19
Identities = 50/89 (56%), Positives = 63/89 (70%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATN 64
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAK 388
AL+ QGFPFYDK RIQYAKT SDIIAK
Sbjct: 65 ALRSXQGFPFYDKPXRIQYAKTDSDIIAK 93
>pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC
Ribozyme Complex
Length = 97
Score = 99.0 bits (245), Expect = 3e-19
Identities = 50/89 (56%), Positives = 63/89 (70%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN TIY SL A+FS+FG+ILD+L ++LK +GQA+V+F++V+SAT
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATN 66
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAK 388
AL+ QGFPFYDK RIQYAKT SDIIAK
Sbjct: 67 ALRSXQGFPFYDKPXRIQYAKTDSDIIAK 95
>ref|XP_756954.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
gb|EAK80901.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
Length = 314
Score = 99.0 bits (245), Expect = 3e-19
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 7/224 (3%)
Frame = +2
Query: 131 TIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALK 310
T+Y +LT +FS + +L V A L+ +GQA+V +DV +A +A +
Sbjct: 52 TLYVQNLNEKVKLETMKATLTNLFSNYATVLSVTAHTNLRMRGQAFVSLDDVHAADKARR 111
Query: 311 RMQGFPFYDKTMRIQYAKTKSDIIA----KADGTFVPRERRKRTDEKSEKKQKREHHHDA 478
FP Y K M+I +AK+KSD + K +G ++ +++ + K+K +
Sbjct: 112 EAHLFPLYGKAMKISFAKSKSDAVVLQKLKDEGGHESEMFKQHKEQRLQHKKKARRDNVL 171
Query: 479 GASQIGMGVTAYPGVYGAPQLTQIPIAGGQRV---MMPEIIVPNNILFVQNLPHETTPMM 649
++ + A G +++Q A +R M E + PN +LF+QN+P
Sbjct: 172 RRKELEKKIRAKKAATG--EISQPEKAAPKRTQQQMPDEYLPPNKMLFLQNIPEGVGKGE 229
Query: 650 LQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSF 781
L+ LF YPG+ +V+ I K IAFVE+ D + A L +
Sbjct: 230 LESLFSAYPGYVDVQTIPGKAEIAFVEFADIPSSATARGALNGY 273
>emb|CAI75278.1| U1 snRNP protein, putative [Theileria annulata]
ref|XP_954754.1| U1 snRNP protein [Theileria annulata strain Ankara]
Length = 346
Score = 96.7 bits (239), Expect = 2e-18
Identities = 75/263 (28%), Positives = 112/263 (42%), Gaps = 54/263 (20%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L +F ++GKIL ++A K+ +GQAW+VF++V S+
Sbjct: 46 IPPNQTLYIKNINDRIKIDVLKRDLMELFGKYGKILQIVAMKSFWRRGQAWIVFDNVESS 105
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
T+A+ +QGF Y T++I YA KSDI++ +GTFV R K KK K+ +
Sbjct: 106 TQAMNELQGFKIYGHTLQINYALEKSDIVSIPEGTFVQR-------PKGPKKPKKILQRE 158
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVM-MPEII-------------------- 592
Q+ Y P LTQ P+ +M PE
Sbjct: 159 MMLKQL------YNSNPSNPLLTQNPVNPAHNLMGNPESFGFSDAPVNNLNMGTMELQGQ 212
Query: 593 VPNNI---------------------------------LFVQNLPHETTPMMLQMLFCQY 673
V NN+ LFV+NLP + + LF
Sbjct: 213 VVNNLNLPYQPHNLTHPFPTHHSPGFSDDPSLMKRNRTLFVENLPDNISHNDVNNLFHNM 272
Query: 674 PGFKEVRMIEAKPGIAFVEYGDE 742
PGF E ++I +K +AF+++ +E
Sbjct: 273 PGFVETKLIASK-HVAFIDFDNE 294
>ref|XP_600315.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Bos
taurus]
Length = 132
Score = 95.1 bits (235), Expect = 4e-18
Identities = 56/129 (43%), Positives = 73/129 (56%)
Frame = +2
Query: 440 SEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQ 619
++K++K+E Q V PG G P +P+ PN ILF+
Sbjct: 6 ADKEKKKEKKKAKTVEQTATTVNKKPG-QGTPNSANTQGNATPNPQVPDY-PPNYILFLN 63
Query: 620 NLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKEN 799
NLP ET MML MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT +
Sbjct: 64 NLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSH 123
Query: 800 QMVITYAKK 826
M ITYAKK
Sbjct: 124 AMKITYAKK 132
>emb|CAA44752.1| U2-snRNP-specific b'' [Mus musculus]
Length = 123
Score = 93.2 bits (230), Expect = 2e-17
Identities = 56/130 (43%), Positives = 71/130 (54%)
Frame = +2
Query: 437 KSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFV 616
K EKK+ + A A+ G G P +P+ PN ILF+
Sbjct: 2 KKEKKKAKTMEQAAAAANKKPG-------QGTPNAANTQGTAAPNPQVPDY-PPNYILFL 53
Query: 617 QNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKE 796
NLP ET MML MLF Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ FKIT
Sbjct: 54 NNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPS 113
Query: 797 NQMVITYAKK 826
+ M ITYAKK
Sbjct: 114 HAMKITYAKK 123
>pdb|2U1A| Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20 Structures
Length = 88
Score = 93.2 bits (230), Expect = 2e-17
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN+ILF+ NLP ET +ML MLF Q+PGFKEVR++ + IAFVE+ +E QA AA + LQ
Sbjct: 12 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 71
Query: 776 SFKITKENQMVITYAKK 826
FKIT+ N M I++AKK
Sbjct: 72 GFKITQNNAMKISFAKK 88
>ref|XP_656582.1| U1snRNP-specific protein [Entamoeba histolytica HM-1:IMSS]
gb|EAL51198.1| U1snRNP-specific protein, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 232
Score = 93.2 bits (230), Expect = 2e-17
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 2/218 (0%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IP + T+Y SL VF +G +L V K+LK +GQA+V+++ SA
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR-KRTDEKSEKKQKREHHH 472
A++ +Q +D+ M I Y+K +SDII K G + RER+ K+ + EK + E
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQIKVQIEKTLEHEE-- 134
Query: 473 DAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMML 652
S I + T++P + NN LF++++P + L
Sbjct: 135 ----SPINQDIEKKES-----NETKLPPNSPTK-------YTNNRLFIKSVPQNVSKQRL 178
Query: 653 QMLFCQYPGFKEVRMIEAK-PGIAFVEYGDETQATAAM 763
+ LF Q GF EVR I K +AF+E+ DE + AM
Sbjct: 179 EELFKQQEGFVEVRYIVIKGNAVAFIEFKDEISSEKAM 216
>emb|CAA44751.1| U2-snRNP-specific b'' [Mus musculus]
Length = 97
Score = 89.4 bits (220), Expect = 2e-16
Identities = 45/77 (58%), Positives = 55/77 (71%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN ILF+ NLP ET MML ML Q+PGFKEVR++ + IAFVE+ ++ QA AA + LQ
Sbjct: 21 PNYILFLNNLPEETNEMMLSMLLNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQ 80
Query: 776 SFKITKENQMVITYAKK 826
FKIT + M ITYAKK
Sbjct: 81 GFKITPSHAMKITYAKK 97
>gb|EAQ93320.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
Length = 196
Score = 89.0 bits (219), Expect = 3e-16
Identities = 41/97 (42%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Frame = +2
Query: 116 IPPNVTIYXXXX-XXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVAS 292
+PPN T+Y +L +FS +G +LDV+A KT+K +GQA +V++D+ +
Sbjct: 17 VPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKDIQT 76
Query: 293 ATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTF 403
AT+A++ + GF F+ + M+I YAK+KS++IAK DGTF
Sbjct: 77 ATQAMRSLDGFEFFGQEMKISYAKSKSNVIAKLDGTF 113
>ref|XP_764943.1| U2 small nuclear ribonucleoprotein B [Theileria parva strain
Muguga]
gb|EAN32660.1| U2 small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 206
Score = 88.6 bits (218), Expect = 4e-16
Identities = 60/211 (28%), Positives = 104/211 (49%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKT 367
L +F +G I+D++A +T +GQA+VVF +++SAT ALK + G +K ++I+YAK
Sbjct: 34 LYELFVPYGIIVDIVARRTKTLRGQAFVVFSEISSATAALKGLNGRKVLNKVLKIEYAKN 93
Query: 368 KSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQ 547
+S K + K K + + H ++
Sbjct: 94 RSYKTLKPSDYY-----------KMSKANRAKLKH----------------------VSD 120
Query: 548 IPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFV 727
+P + + ++ LFVQN+PH+ + L++LF QYPGF+ R IE + +AFV
Sbjct: 121 LP-----EDLRSSLTDESHALFVQNIPHDMSKESLELLFKQYPGFRGCRFIEGR-FVAFV 174
Query: 728 EYGDETQATAAMNNLQSFKITKENQMVITYA 820
+Y +QA A+ L F+++ + + I+ A
Sbjct: 175 DYSMASQAEIALEGLNGFRVSHTHALQISLA 205
>ref|XP_913771.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
(predicted) [Mus musculus]
Length = 140
Score = 86.7 bits (213), Expect = 2e-15
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN+ILF+ NLP ET +M MLF Q+ GFKEVR++ + IAF+E+ +E QA AA + LQ
Sbjct: 64 PNHILFLTNLPEETNKLMFSMLFNQFLGFKEVRLVPGRHDIAFLEFDNEVQAGAARDALQ 123
Query: 776 SFKITKENQMVITYAKK 826
FKIT+ N M I++AKK
Sbjct: 124 GFKITQNNTMKISFAKK 140
>ref|XP_894188.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
(predicted) [Mus musculus]
Length = 140
Score = 86.7 bits (213), Expect = 2e-15
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN+ILF+ NLP ET +M MLF Q+ GFKEVR++ + IAF+E+ +E QA AA + LQ
Sbjct: 64 PNHILFLTNLPEETNKLMFSMLFNQFLGFKEVRLVPGRHDIAFLEFDNEVQAGAARDALQ 123
Query: 776 SFKITKENQMVITYAKK 826
FKIT+ N M I++AKK
Sbjct: 124 GFKITQNNTMKISFAKK 140
>emb|CAI74606.1| U1/2 small nuclear ribonucleoprotein, putative [Theileria annulata]
ref|XP_952338.1| U1/2 small nuclear ribonucleoprotein [Theileria annulata strain
Ankara]
Length = 206
Score = 86.7 bits (213), Expect = 2e-15
Identities = 60/208 (28%), Positives = 101/208 (48%)
Frame = +2
Query: 197 VFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSD 376
+F +G I+D++A KT +GQA+V+F +++SAT ALK + G +K ++I+YAK +S
Sbjct: 37 LFVPYGIIVDIVARKTKTLRGQAFVIFSEISSATAALKGLNGRKILNKVLKIEYAKNRSY 96
Query: 377 IIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPI 556
T P + K + K + PI
Sbjct: 97 ------KTLKPSDYYKMSKANRGKFK--------------------------------PI 118
Query: 557 AGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYG 736
+ + ++ LFVQN+PH+ + L++LF QYPGF+ R IE + +AFV+Y
Sbjct: 119 SDFPDELRSSGTDESHSLFVQNIPHDMSRESLELLFKQYPGFRGCRFIEGR-FVAFVDYS 177
Query: 737 DETQATAAMNNLQSFKITKENQMVITYA 820
+QA A+ L F+++ + + I+ A
Sbjct: 178 MASQAEIALEGLNGFRVSHTHALQISLA 205
>ref|XP_573460.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Rattus
norvegicus]
Length = 140
Score = 85.9 bits (211), Expect = 3e-15
Identities = 47/103 (45%), Positives = 66/103 (64%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I N TIY SL A+FSQFG ++DV+A K K +GQA V+F+++ S+
Sbjct: 3 IRQNHTIYINNMNDKIKQEELKRSLYALFSQFGHVVDVVALK--KARGQACVIFKELGSS 60
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK 424
T AL+++ G PF K MRIQYAKT S+II+K GTF +E+++
Sbjct: 61 TNALRQLLGLPFSGKPMRIQYAKTDSNIISKMCGTFADKEKKE 103
>ref|XP_964275.1| hypothetical protein [Neurospora crassa N150]
ref|XP_329968.1| hypothetical protein [Neurospora crassa]
gb|EAA35039.1| hypothetical protein [Neurospora crassa]
Length = 198
Score = 83.6 bits (205), Expect = 1e-14
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +2
Query: 119 PPNVTIYXXXX-XXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
PPN T+Y +L +FS +G +LDV+A KT+K +GQA +V+ D+ +A
Sbjct: 19 PPNQTLYVTNLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTA 78
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVP 409
T+A++ + G F + M+I YAK +S+IIAK DGT VP
Sbjct: 79 TQAMRSLDGMEFLGRKMKITYAKGRSNIIAKLDGTLVP 116
>emb|CAG85550.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_457541.1| hypothetical protein DEHA0B13783g [Debaryomyces hansenii CBS767]
Length = 252
Score = 83.2 bits (204), Expect = 2e-14
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 6/238 (2%)
Frame = +2
Query: 131 TIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALK 310
T+Y L +VF ++GKI+ + A K LK KGQA+V FE+ ++ A+
Sbjct: 45 TVYVNNLNDKVSVNKLKGELESVFQKYGKIIQITAHKNLKMKGQAFVTFENKTASEAAIH 104
Query: 311 RMQGFPFYDKTMRIQYAKTKS-----DIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 475
+Q + K M ++YA++ S DI+ + + ++ + + +E++ K
Sbjct: 105 GLQEHELFGKPMHVEYARSNSDNYYRDILKDEEAIEIRKQLKMKANEQAAGDAK------ 158
Query: 476 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 655
G ++G+ ++ + I PN IL +QNL E T L
Sbjct: 159 -GVKKLGV----------------------KKAQTWKAIPPNKILLIQNLKPEITNGDLL 195
Query: 656 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYAKK 826
F Y GF R+++ + ++F+E+ +E AT + +L K+ + ++TYAKK
Sbjct: 196 EFFEAYGGFINSRLVKVR-NLSFIEFENEMSATNCLEDLTKEKLEQFGTDALVTYAKK 252
>ref|XP_896621.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Mus
musculus]
ref|XP_919783.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Mus
musculus]
Length = 194
Score = 82.8 bits (203), Expect = 2e-14
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN LF+ NLP ET M+L MLF Q PGFKEVR++ + I FVE+ ++ QA AA + LQ
Sbjct: 118 PNYSLFLNNLPEETNEMVLSMLFKQCPGFKEVRLVPGRHDIVFVEFENDGQAGAARDALQ 177
Query: 776 SFKITKENQMVITYAKK 826
FK+T + M ITYAKK
Sbjct: 178 GFKMTLSHAMKITYAKK 194
>ref|XP_716616.1| hypothetical protein CaO19_7375 [Candida albicans SC5314]
gb|EAK97621.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
Length = 204
Score = 82.0 bits (201), Expect = 4e-14
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 1/236 (0%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P TIY L F+ GKIL + A KTLK KGQA++ FED+ SAT+
Sbjct: 4 PRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATK 63
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG 481
AL+ + + K M + YAK+ +D+I+ D +RK+ K K K +D
Sbjct: 64 ALE-LNKKDLFSKPMNVTYAKSDADVISTDDNI----AQRKKLRSKKRKLDKSGTKNDKQ 118
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQML 661
++ + ++P PN+IL +QNL L++
Sbjct: 119 IKKL------------RDEWKELP--------------PNHILLIQNLEKFDD---LKIY 149
Query: 662 FCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYAKK 826
F ++ GF VR+++ K +AF+E+ E A + ++ + + + +++++AKK
Sbjct: 150 FEKFAGFDNVRLVKVK-NLAFIEFESEDLAKSCLDQTTEDDLKQFGHDVILSFAKK 204
>dbj|BAE57260.1| unnamed protein product [Aspergillus oryzae]
Length = 193
Score = 80.1 bits (196), Expect = 1e-13
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
PN T+Y SL +FS +G +LDV+A KT + +GQA +VF+DV ++T+
Sbjct: 23 PNQTLYCANLPDKLPKYDLRLSLYMLFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQ 82
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTF 403
A++ +QGF F+ K ++I YAK SD+IAK G +
Sbjct: 83 AMRALQGFEFFGKQLKIVYAKGTSDVIAKLRGAY 116
>ref|XP_890384.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Mus
musculus]
Length = 142
Score = 76.3 bits (186), Expect = 2e-12
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN LF+++LP T MML ML Q+PGFKEV ++ + IAFVE+ ++ QA A + LQ
Sbjct: 66 PNYSLFLKDLPEWTNEMMLSMLLKQFPGFKEVHLVPGRHDIAFVEFENDGQAGAVRDALQ 125
Query: 776 SFKITKENQMVITYAK 823
FKIT M ITYAK
Sbjct: 126 GFKITLSQAMEITYAK 141
>ref|XP_919899.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Mus
musculus]
Length = 211
Score = 76.3 bits (186), Expect = 2e-12
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN LF+++LP T MML ML Q+PGFKEV ++ + IAFVE+ ++ QA A + LQ
Sbjct: 135 PNYSLFLKDLPEWTNEMMLSMLLKQFPGFKEVHLVPGRHDIAFVEFENDGQAGAVRDALQ 194
Query: 776 SFKITKENQMVITYAK 823
FKIT M ITYAK
Sbjct: 195 GFKITLSQAMEITYAK 210
>ref|XP_503112.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG81306.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 226
Score = 75.1 bits (183), Expect = 5e-12
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 4/241 (1%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I P TIY +L + ++G +LDV+A L+ +GQA+VVF+ + SA
Sbjct: 4 IAPCETIYIRNINEKIKIPTLKTTLKEICKEYGDVLDVVAHGNLRLRGQAFVVFDSIDSA 63
Query: 296 TEALKRMQGFP---FYDKTMRIQYAKTKSD-IIAKADGTFVPRERRKRTDEKSEKKQKRE 463
A+ + + + YAK+ SD +AK + R R +K E KQ +
Sbjct: 64 ESAISALNSTKVDGLKGSVVEVTYAKSPSDATMAKKGDKELDAHVRARVAQK-ELKQLSD 122
Query: 464 HHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTP 643
+ A + T + + T P+ + IL +QNLP +
Sbjct: 123 -SNKRRAEPVRTAETPAKKAKTSTETTYNPV--------------HKILLLQNLPKSASQ 167
Query: 644 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAK 823
+ LF PG+ EVR++ A+ + F E+ E QA A Q I E +++++YAK
Sbjct: 168 DTVAALFSDLPGYVEVRLVPARQ-VGFAEFETEAQAVVAKEKSQGADIDGE-KLIVSYAK 225
Query: 824 K 826
K
Sbjct: 226 K 226
>gb|AAR97868.1| sans fille [Drosophila huaylasi]
gb|AAR97865.1| sans fille [Drosophila parisiena]
gb|AAR97864.1| sans fille [Drosophila parisiena]
Length = 98
Score = 73.2 bits (178), Expect = 2e-11
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Frame = +2
Query: 266 WVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR------ 427
+V+F+++ SA+ AL+ MQGFPFYDK MRI Y+KT SDI+AK GT+ R ++ +
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 428 -TDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+EK +KK+K+ +A + T+ P PN
Sbjct: 61 GVEEKKDKKKKQSSAENANPNT----------------QTEQP--------------PNQ 90
Query: 605 ILFVQNLP 628
ILF+ NLP
Sbjct: 91 ILFLTNLP 98
>gb|AAR97867.1| sans fille [Drosophila mayaguana]
gb|AAR97866.1| sans fille [Drosophila straubae]
gb|AAR97863.1| sans fille [Drosophila mulleri]
gb|AAR97862.1| sans fille [Drosophila mulleri]
gb|AAR97861.1| sans fille [Drosophila arizonae]
gb|AAR97860.1| sans fille [Drosophila arizonae]
gb|AAR97858.1| sans fille [Drosophila arizonae]
gb|AAR97850.1| sans fille [Drosophila mojavensis]
gb|AAR97849.1| sans fille [Drosophila mojavensis]
gb|AAR97848.1| sans fille [Drosophila mojavensis]
gb|AAR97847.1| sans fille [Drosophila mojavensis]
gb|AAR97846.1| sans fille [Drosophila mojavensis]
gb|AAR97845.1| sans fille [Drosophila mojavensis]
gb|AAR97844.1| sans fille [Drosophila mojavensis]
gb|AAR97843.1| sans fille [Drosophila mojavensis]
gb|AAR97842.1| sans fille [Drosophila mojavensis]
gb|AAR97841.1| sans fille [Drosophila mojavensis]
gb|AAR97840.1| sans fille [Drosophila mojavensis]
gb|AAR97839.1| sans fille [Drosophila mojavensis]
gb|AAR97838.1| sans fille [Drosophila mojavensis]
gb|AAR97837.1| sans fille [Drosophila mojavensis]
gb|AAR97836.1| sans fille [Drosophila mojavensis]
gb|AAR97835.1| sans fille [Drosophila mojavensis]
gb|AAR97834.1| sans fille [Drosophila mojavensis]
gb|AAR97833.1| sans fille [Drosophila mojavensis]
gb|AAR97832.1| sans fille [Drosophila mojavensis]
gb|AAR97831.1| sans fille [Drosophila mojavensis]
gb|AAR97830.1| sans fille [Drosophila mojavensis]
gb|AAR97829.1| sans fille [Drosophila mojavensis]
gb|AAR97828.1| sans fille [Drosophila mojavensis]
gb|AAR97827.1| sans fille [Drosophila mojavensis]
gb|AAR97826.1| sans fille [Drosophila mojavensis]
gb|AAR97825.1| sans fille [Drosophila mojavensis]
Length = 98
Score = 71.6 bits (174), Expect = 5e-11
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Frame = +2
Query: 266 WVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR------ 427
+V+F+++ SA+ AL+ MQGFPFYDK MRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 428 -TDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+EK +KK+K+ +A + T+ P PN
Sbjct: 61 GVEEKKDKKKKQSSAENANPNT----------------QTEQP--------------PNQ 90
Query: 605 ILFVQNLP 628
ILF+ NLP
Sbjct: 91 ILFLTNLP 98
>gb|AAR97859.1| sans fille [Drosophila arizonae]
Length = 97
Score = 71.2 bits (173), Expect = 7e-11
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Frame = +2
Query: 269 VVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR------- 427
V+F+++ SA+ AL+ MQGFPFYDK MRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 VIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPG 60
Query: 428 TDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNI 607
+EK +KK+K+ +A + T+ P PN I
Sbjct: 61 VEEKKDKKKKQSSAENANPNT----------------QTEQP--------------PNQI 90
Query: 608 LFVQNLP 628
LF+ NLP
Sbjct: 91 LFLTNLP 97
>gb|AAR97856.1| sans fille [Drosophila navojoa]
gb|AAR97855.1| sans fille [Drosophila navojoa]
gb|AAR97854.1| sans fille [Drosophila navojoa]
gb|AAR97853.1| sans fille [Drosophila navojoa]
gb|AAR97852.1| sans fille [Drosophila navojoa]
gb|AAR97851.1| sans fille [Drosophila navojoa]
Length = 98
Score = 71.2 bits (173), Expect = 7e-11
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Frame = +2
Query: 266 WVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKR------ 427
+V+F+++ SA+ AL+ MQGFPFYDK MRI Y+K+ SDI+AK GT+ R ++ +
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 428 -TDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNN 604
+EK +KK+K+ +A + T+ P PN
Sbjct: 61 GVEEKKDKKKKQTSAENANPNT----------------QTEQP--------------PNQ 90
Query: 605 ILFVQNLP 628
ILF+ NLP
Sbjct: 91 ILFLTNLP 98
>ref|XP_738251.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium chabaudi
chabaudi]
emb|CAH82541.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
chabaudi]
Length = 107
Score = 69.3 bits (168), Expect = 3e-10
Identities = 50/155 (32%), Positives = 65/155 (41%)
Frame = +2
Query: 356 YAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAP 535
YAKTKS II K +GT+ P + K + K
Sbjct: 1 YAKTKSRIIEKLEGTYNPIKNYKSANNYENK----------------------------- 31
Query: 536 QLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG 715
V LFVQNLP E L++LF QYPGF EVR I +
Sbjct: 32 -------------------VNQFTLFVQNLPDEINKNALEILFNQYPGFSEVRYIPGR-N 71
Query: 716 IAFVEYGDETQATAAMNNLQSFKITKENQMVITYA 820
+AF+++ AMN LQSFKIT E+ M I+++
Sbjct: 72 VAFIDFNSYQNGEVAMNGLQSFKITPEHPMKISWS 106
>ref|XP_750541.1| U1 small nuclear ribonucleoprotein A [Aspergillus fumigatus Af293]
gb|EAL88503.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus Af293]
Length = 294
Score = 68.9 bits (167), Expect = 3e-10
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 20/111 (18%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTM------ 346
SL +FS +G +LDV+A KT K +GQA +VF+DV ++T+A++ +QGF F+ K M
Sbjct: 124 SLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRALQGFEFFGKEMVSHFFF 183
Query: 347 -------------RIQYAKTKSDIIAKADGTF-VPRERRKRTDEKSEKKQK 457
+I YAK SD+IA+ GT+ VP + S QK
Sbjct: 184 NGLATALNTVNFQKIVYAKGTSDVIARLRGTYNVPTTTATQATGASTDLQK 234
>ref|XP_731718.1| hypothetical protein PC301396.00.0 [Plasmodium chabaudi chabaudi]
emb|CAH85078.1| hypothetical protein PC301396.00.0 [Plasmodium chabaudi]
Length = 90
Score = 66.2 bits (160), Expect = 2e-09
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
IPPN T+Y L F +G +LDV+ K+ K +GQA+V+F ++AS+
Sbjct: 6 IPPNQTLYINNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIASS 65
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTK 370
T A K ++G PF +K + I YAKTK
Sbjct: 66 TLAYKNLKGKPFLNKNININYAKTK 90
>ref|XP_503188.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG81388.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 146
Score = 65.5 bits (158), Expect = 4e-09
Identities = 36/94 (38%), Positives = 51/94 (54%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P+ T+Y L FS +G ILD++A K + +GQA VVF D+ ++
Sbjct: 29 PSPTLYVKNLTDKCTKSDLKRYLYMRFSSYGHILDIVAMKNERMRGQAHVVFNDIDASIS 88
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTF 403
AL +Q F K M I+YA++KS IAK DG+F
Sbjct: 89 ALNGLQKSEFMGKEMVIEYARSKSHAIAKLDGSF 122
>ref|XP_761732.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
gb|EAK86451.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
Length = 303
Score = 65.1 bits (157), Expect = 5e-09
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK- 364
L A+FS +G++LDV+A + +GQA+VVFE V+ ++ A + ++GFPFY K++ I+Y+
Sbjct: 93 LLALFSTYGRVLDVVATRAPSMRGQAFVVFESVSFSSAAKRGLEGFPFYGKSLHIEYSTG 152
Query: 365 TKSDIIAKAD---GTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAP 535
TKS + K + + R+ + S + +KR+ A +
Sbjct: 153 TKSKALLKRELGHEALMERDWERSHTLVSRRSEKRDLLSQQDAEE--------------D 198
Query: 536 QLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEV----RMIE 703
+ T + + + +L + +P +LQ LF + GF +V R +
Sbjct: 199 ENTTVQAQDDEATRRKRAKLDKILLVAERIPATIQLHILQTLFQSHSGFVDVIPADRTQQ 258
Query: 704 AKP------GIAFVEYGDETQATAAMNNLQSFKI 787
P A + + + A AA N L ++
Sbjct: 259 DDPKQNNDDWTAHIHFDSKAHAEAARNTLDGVQL 292
>ref|XP_763055.1| hypothetical protein TP03_0036 [Theileria parva strain Muguga]
gb|EAN30772.1| hypothetical protein TP03_0036 [Theileria parva]
Length = 288
Score = 64.3 bits (155), Expect = 8e-09
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 15/75 (20%)
Frame = +2
Query: 239 KTLKHKGQAWVVFEDVASATEALKRMQG---------------FPFYDKTMRIQYAKTKS 373
K+ +GQAWV+++++ SATEALK +QG + MRI YA KS
Sbjct: 2 KSFWRRGQAWVIYDNINSATEALKELQGTLHTISTLFLHLFYRHKLFGHVMRINYALEKS 61
Query: 374 DIIAKADGTFVPRER 418
D+++KADGTFVPR +
Sbjct: 62 DVVSKADGTFVPRPK 76
Score = 39.3 bits (90), Expect = 0.29
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 581 PEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAA 760
P I N +LFV++LP + LF PGF E ++I +K +AF+++ +E + A
Sbjct: 196 PSITRRNRVLFVEDLPDGIAHEDVNNLFHHMPGFVETKLINSK-HVAFIDFDNEFNSNYA 254
Query: 761 MNNLQSFKIT 790
+ + T
Sbjct: 255 LQRILPISYT 264
>ref|XP_868632.1| PREDICTED: similar to Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1) isoform 4 [Canis
familiaris]
Length = 537
Score = 64.3 bits (155), Expect = 8e-09
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K S + + R S+ + G + +G++ P V+GA
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGTQTLDLGLSV-PNVHGALAP 316
Query: 542 TQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A I +P N++L V NL P TP L +LF Y + V+++
Sbjct: 317 LAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL 376
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 377 FNKKENALVQMADGSQAQLAMSHLNGHKL 405
>emb|CAA17824.1| SPBC8D2.09c [Schizosaccharomyces pombe]
ref|NP_595571.1| U2 snRNP protein [Schizosaccharomyces pombe 972h-]
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B"
Length = 111
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/68 (45%), Positives = 48/68 (70%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
+L +FS +G ++D++A KT K +GQA VVF D ++A A+K ++ F F+ K M+IQYA
Sbjct: 23 ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAH 82
Query: 365 TKSDIIAK 388
+KS II +
Sbjct: 83 SKSKIIER 90
>emb|CAA43202.1| pyrimidine binding protein 1 [Rattus norvegicus]
ref|NP_071961.1| polypyrimidine tract binding protein 1 isoform b [Rattus
norvegicus]
Length = 530
Score = 63.5 bits (153), Expect = 1e-08
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 258 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 309
Query: 542 TQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A I +P N++L V NL P TP L +LF Y + V+++
Sbjct: 310 LAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL 369
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A VE D +QA AM++L K+
Sbjct: 370 FNKKENALVEMADGSQAQLAMSHLNGHKL 398
>dbj|BAA21437.1| spliceosomal protein [Schizosaccharomyces pombe]
Length = 216
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/68 (45%), Positives = 48/68 (70%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
+L +FS +G ++D++A KT K +GQA VVF D ++A A+K ++ F F+ K M+IQYA
Sbjct: 23 ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAH 82
Query: 365 TKSDIIAK 388
+KS II +
Sbjct: 83 SKSKIIER 90
>dbj|BAE43140.1| unnamed protein product [Mus musculus]
Length = 530
Score = 62.8 bits (151), Expect = 2e-08
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 258 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 309
Query: 542 TQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A I +P N++L V NL P TP L +LF Y + V+++
Sbjct: 310 LAIPSAAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL 369
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 370 FNKKENALVQMADGSQAQLAMSHLNGHKL 398
>gb|AAL38169.1| polypyrimidine-tract binding protein [Bos taurus]
ref|NP_776867.1| polypyrimidine tract binding protein 1 [Bos taurus]
Length = 531
Score = 62.4 bits (150), Expect = 3e-08
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 259 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 310
Query: 542 TQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A I +P N++L V NL P TP L +LF Y + V+++
Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVL 370
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 371 FNKKENALVQMADGSQAQLAMSHLNGHKL 399
>ref|XP_868641.1| PREDICTED: similar to Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1) isoform 8 [Canis
familiaris]
Length = 531
Score = 62.4 bits (150), Expect = 3e-08
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 259 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 310
Query: 542 TQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A I +P N++L V NL P TP L +LF Y + V+++
Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL 370
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 371 FNKKENALVQMADGSQAQLAMSHLNGHKL 399
>emb|CAA43973.1| polypirimidine tract binding protein [Homo sapiens]
emb|CAA43056.1| polypyrimidine tract-binding protein (pPTB) [Homo sapiens]
ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]
sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
protein PPTB-1)
gb|AAC99798.1| PTB_HUMAN; PTB; HETEROGENEOUS NUCLEA; HNRNP I; 57 KD RNA-BINDING
PROTEIN PPTB-1 [Homo sapiens]
gb|AAH04383.1| PTBP1 protein [Homo sapiens]
Length = 531
Score = 62.0 bits (149), Expect = 4e-08
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 259 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 310
Query: 542 TQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A I +P N++L V NL P TP L +LF Y + V+++
Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL 370
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D QA AM++L K+
Sbjct: 371 FNKKENALVQMADGNQAQLAMSHLNGHKL 399
>ref|XP_708678.1| PREDICTED: similar to Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1) isoform 2 [Danio
rerio]
Length = 538
Score = 61.6 bits (148), Expect = 5e-08
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 9/209 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L V+ F T ++ QA + F D +A A + G Y+ T+RI ++
Sbjct: 207 LHQIFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFS 265
Query: 362 K-TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQ 538
K T ++ D + R+ + + + EHH A A G+T PGV GA
Sbjct: 266 KLTSLNVKYNNDKS---RDYTRPDLPTGDSQPALEHHAVAAA----FGLTI-PGVPGALA 317
Query: 539 LTQIP-----IAGGQRVMMPEIIVPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMI 700
IP A R+ P + + ++ V NL P TP L +LF Y V+++
Sbjct: 318 SLTIPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIM 377
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A ++ D TQA AM++L K+
Sbjct: 378 FNKKENALIQMSDGTQAQLAMSHLNGQKL 406
>ref|XP_688958.1| PREDICTED: similar to Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
(57 kDa RNA-binding protein PPTB-1) isoform 1 [Danio
rerio]
Length = 543
Score = 61.2 bits (147), Expect = 7e-08
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 9/206 (4%)
Frame = +2
Query: 197 VFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYAK-T 367
+FS+FG +L V+ F T ++ QA + F D +A A + G Y+ T+RI ++K T
Sbjct: 215 IFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFSKLT 273
Query: 368 KSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQLTQ 547
++ D + R+ + + + EHH A A G+T PGV GA
Sbjct: 274 SLNVKYNNDKS---RDYTRPDLPTGDSQPALEHHAVAAA----FGLTI-PGVPGALASLT 325
Query: 548 IP-----IAGGQRVMMPEIIVPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMIEAK 709
IP A R+ P + + ++ V NL P TP L +LF Y V+++ K
Sbjct: 326 IPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNK 385
Query: 710 PGIAFVEYGDETQATAAMNNLQSFKI 787
A ++ D TQA AM++L K+
Sbjct: 386 KENALIQMSDGTQAQLAMSHLNGQKL 411
>dbj|BAC29560.1| unnamed protein product [Mus musculus]
Length = 489
Score = 60.8 bits (146), Expect = 9e-08
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 159 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 217
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 218 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 269
Query: 542 TQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMIE 703
IP A R+ +P + N++L V NL P TP L +LF Y + V+++
Sbjct: 270 LAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF 329
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 330 NKKENALVQMADGSQAQLAMSHLNGHKL 357
>dbj|BAE29183.1| unnamed protein product [Mus musculus]
dbj|BAE40295.1| unnamed protein product [Mus musculus]
dbj|BAC34712.1| unnamed protein product [Mus musculus]
dbj|BAC32158.1| unnamed protein product [Mus musculus]
dbj|BAC38544.1| unnamed protein product [Mus musculus]
Length = 529
Score = 60.8 bits (146), Expect = 9e-08
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 258 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 309
Query: 542 TQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMIE 703
IP A R+ +P + N++L V NL P TP L +LF Y + V+++
Sbjct: 310 LAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF 369
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 370 NKKENALVQMADGSQAQLAMSHLNGHKL 397
>ref|XP_663383.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
gb|EAA62872.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
Length = 127
Score = 60.5 bits (145), Expect = 1e-07
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = +2
Query: 254 KGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFV 406
+GQA VVF+D+ ++T+A++ +QGF F+ K M+I YAK SD+IA+ GT+V
Sbjct: 2 RGQAHVVFKDIQASTQAMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 52
>dbj|BAB86943.1| polypirimidine tract binding protein [Mus musculus]
Length = 528
Score = 60.5 bits (145), Expect = 1e-07
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+R+ ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRVDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 258 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 309
Query: 542 TQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMIE 703
IP A R+ +P + N++L V NL P TP L +LF Y + V+++
Sbjct: 310 LAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF 369
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 370 NKKENALVQMADGSQAQLAMSHLNGHKL 397
>dbj|BAE29899.1| unnamed protein product [Mus musculus]
Length = 529
Score = 60.1 bits (144), Expect = 2e-07
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLGGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 258 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 309
Query: 542 TQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMIE 703
IP A R+ +P + N++L V NL P TP L +LF Y + V+++
Sbjct: 310 LAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF 369
Query: 704 AKPGIAFVEYGDETQATAAMNNLQSFKI 787
K A V+ D +QA AM++L K+
Sbjct: 370 NKKENALVQMADGSQAQLAMSHLNGHKL 397
>emb|CAG85430.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_457426.1| hypothetical protein DEHA0B11066g [Debaryomyces hansenii CBS767]
Length = 116
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = +2
Query: 131 TIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALK 310
T+Y +L FS +G I+D++ K +GQA ++F +V AT A+K
Sbjct: 24 TLYVNNLNDKIQLATLKHNLYVYFSTYGDIIDIVMKAQGKMRGQAHIIFANVMHATNAMK 83
Query: 311 RMQGFPFYDKTMRIQYAKTKSDIIAKAD 394
+QG PF++K + I+Y+ KS II+ +
Sbjct: 84 SLQGKPFFEKDLHIEYSLKKSKIISNLE 111
>ref|XP_868637.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform b isoform 6 [Canis familiaris]
Length = 550
Score = 57.0 bits (136), Expect = 1e-06
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGV-----------T 508
K S + + R S+ + + G G
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGL 318
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFC 667
+ P V+GA IP A I +P N++L V NL P TP L +LF
Sbjct: 319 SVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFG 378
Query: 668 QYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 379 VYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 418
>ref|NP_114367.1| polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
emb|CAA46443.1| polypirimidine tract binding protein [Homo sapiens]
Length = 550
Score = 56.6 bits (135), Expect = 2e-06
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 20/220 (9%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGV-----------T 508
K S + + R S+ + + G G
Sbjct: 259 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGL 318
Query: 509 AYPGVYGAPQLTQIPIAGGQRVMMPEIIVP------NNILFVQNL-PHETTPMMLQMLFC 667
+ P V+GA IP A I +P N++L V NL P TP L +LF
Sbjct: 319 SVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFG 378
Query: 668 QYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
Y + V+++ K A V+ D QA AM++L K+
Sbjct: 379 VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL 418
>emb|CAF90432.1| unnamed protein product [Tetraodon nigroviridis]
Length = 499
Score = 55.5 bits (132), Expect = 4e-06
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + G +L ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 141 LYTVCNPVGNVLRIVIFK--RNGIQAMVEFESVHCAQKAKAALNGADIYAGCCTLKIEYA 198
Query: 362 KTKSDIIAKADGT---FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGA 532
+ + K D + +R K ++Q H A S+ G G
Sbjct: 199 RPTRLNVIKNDNESWDYTKPYLVRRDRGKGRQRQAILGEHPASYSENGYG---------- 248
Query: 533 PQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHET-------TPMMLQM----------- 658
P +P+ R + + VP+ + + LP + TP + M
Sbjct: 249 PPCPLLPLPSNSRYKLSPLDVPDMVSYP--LPQSSSYSYSGHTPSSVAMVSGLHPSKMNC 306
Query: 659 -----LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
LFC Y ++V+ +++ PG A VE GDE A+ +L S K+
Sbjct: 307 TRIFNLFCLYGNIEKVKFMKSVPGTALVEMGDEYAVDRAITHLNSIKV 354
>ref|XP_687132.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform a isoform 1 [Danio rerio]
Length = 547
Score = 54.7 bits (130), Expect = 7e-06
Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L V+ F T ++ QA + F D +A A + G Y+ T+RI ++
Sbjct: 190 LHQIFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFS 248
Query: 362 K-TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA--------- 511
K T ++ D + R D + Q HH A+ G+ +
Sbjct: 249 KLTSLNVKYNNDKS----RDYTRPDLPTGDSQPALEHHAVAAAFAAPGIISAAPYASAHA 304
Query: 512 -------------YPGVYGAPQLTQIP-----IAGGQRVMMPEIIVPNNILFVQNL-PHE 634
PGV GA IP A R+ P + + ++ V NL P
Sbjct: 305 FPPAFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPER 364
Query: 635 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
TP L +LF Y V+++ K A ++ D TQA AM++L K+
Sbjct: 365 VTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKL 415
>gb|AAH91854.1| Sb:cb363 protein [Danio rerio]
Length = 586
Score = 54.7 bits (130), Expect = 7e-06
Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L V+ F T ++ QA + F D +A A + G Y+ T+RI ++
Sbjct: 229 LHQIFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFS 287
Query: 362 K-TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA--------- 511
K T ++ D + R D + Q HH A+ G+ +
Sbjct: 288 KLTSLNVKYNNDKS----RDYTRPDLPTGDSQPALEHHAVAAAFAAPGIISAAPYASAHA 343
Query: 512 -------------YPGVYGAPQLTQIP-----IAGGQRVMMPEIIVPNNILFVQNL-PHE 634
PGV GA IP A R+ P + + ++ V NL P
Sbjct: 344 FPPAFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPER 403
Query: 635 TTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
TP L +LF Y V+++ K A ++ D TQA AM++L K+
Sbjct: 404 VTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKL 454
>gb|AAH28848.1| Ptbp1 protein [Mus musculus]
Length = 555
Score = 54.3 bits (129), Expect = 9e-06
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 377 SLLILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 423
>ref|XP_709197.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform a isoform 2 [Danio rerio]
Length = 564
Score = 54.3 bits (129), Expect = 9e-06
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 31/228 (13%)
Frame = +2
Query: 197 VFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYAK-T 367
+FS+FG +L V+ F T ++ QA + F D +A A + G Y+ T+RI ++K T
Sbjct: 210 IFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFSKLT 268
Query: 368 KSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA------------ 511
++ D + R D + Q HH A+ G+ +
Sbjct: 269 SLNVKYNNDKS----RDYTRPDLPTGDSQPALEHHAVAAAFAAPGIISAAPYASAHAFPP 324
Query: 512 ----------YPGVYGAPQLTQIP-----IAGGQRVMMPEIIVPNNILFVQNL-PHETTP 643
PGV GA IP A R+ P + + ++ V NL P TP
Sbjct: 325 AFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPERVTP 384
Query: 644 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y V+++ K A ++ D TQA AM++L K+
Sbjct: 385 HCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKL 432
>ref|XP_709198.1| PREDICTED: similar to polypyrimidine tract-binding protein 1
isoform a isoform 3 [Danio rerio]
Length = 572
Score = 54.3 bits (129), Expect = 9e-06
Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 31/228 (13%)
Frame = +2
Query: 197 VFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYAK-T 367
+FS+FG +L V+ F T ++ QA + F D +A A + G Y+ T+RI ++K T
Sbjct: 218 IFSKFGTVLKVITF-TKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFSKLT 276
Query: 368 KSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA------------ 511
++ D + R D + Q HH A+ G+ +
Sbjct: 277 SLNVKYNNDKS----RDYTRPDLPTGDSQPALEHHAVAAAFAAPGIISAAPYASAHAFPP 332
Query: 512 ----------YPGVYGAPQLTQIP-----IAGGQRVMMPEIIVPNNILFVQNL-PHETTP 643
PGV GA IP A R+ P + + ++ V NL P TP
Sbjct: 333 AFAIQQAGLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPERVTP 392
Query: 644 MMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y V+++ K A ++ D TQA AM++L K+
Sbjct: 393 HCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKL 440
>gb|AAH07472.1| Ptbp1 protein [Mus musculus]
dbj|BAE30277.1| unnamed protein product [Mus musculus]
dbj|BAC40383.1| unnamed protein product [Mus musculus]
dbj|BAC34292.1| unnamed protein product [Mus musculus]
dbj|BAC31665.1| unnamed protein product [Mus musculus]
dbj|BAC28230.1| unnamed protein product [Mus musculus]
dbj|BAC30837.1| unnamed protein product [Mus musculus]
Length = 555
Score = 53.9 bits (128), Expect = 1e-05
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 377 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 423
>gb|AAH66210.1| Ptbp1 protein [Mus musculus]
Length = 555
Score = 53.9 bits (128), Expect = 1e-05
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLYPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 377 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 423
>dbj|BAE32096.1| unnamed protein product [Mus musculus]
Length = 555
Score = 53.9 bits (128), Expect = 1e-05
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 377 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 423
>dbj|BAC65159.1| polypirimidine tract binding protein [Mus musculus]
Length = 554
Score = 53.9 bits (128), Expect = 1e-05
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 377 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 423
>emb|CAA36321.1| 25kDa nuclear protein [Mus musculus]
ref|NP_032982.1| polypyrimidine tract binding protein 1 [Mus musculus]
sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I)
Length = 527
Score = 53.5 bits (127), Expect = 1e-05
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 8/196 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAPQL 541
K + + + + R T + A+ G+ V P V+GA
Sbjct: 258 K-----LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSV---PNVHGALAP 309
Query: 542 TQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPMMLQMLFCQYPGFKEVRMIE 703
IP A R+ +P + N++L V NL P TP L +LF Y + V+++
Sbjct: 310 LAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF 369
Query: 704 AKPGIAFVEYGDETQA 751
K A V+ D +QA
Sbjct: 370 NKKENALVQMADGSQA 385
>gb|AAH86489.1| Ptbp1 protein [Mus musculus]
Length = 555
Score = 53.1 bits (126), Expect = 2e-05
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIGFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
L +LF Y + V+++ K A V+ D +QA AM++L K+
Sbjct: 377 SLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKL 423
>ref|XP_686978.1| PREDICTED: similar to polypyrimidine tract binding protein 2
isoform 1 [Danio rerio]
Length = 518
Score = 53.1 bits (126), Expect = 2e-05
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 11/211 (5%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG ++ ++ F T ++ QA + F D +A +A + G Y+ T+RI ++
Sbjct: 191 LQQIFSKFGTVMKIITF-TKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFS 249
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA-----YPGVY 526
K + + K ++KS + E G + + A P +
Sbjct: 250 KLVNLNV-------------KYNNDKSRDYTRPELPAGDGQPPVDPSMAAALSKDSPSLL 296
Query: 527 GA---PQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHE-TTPMMLQMLFCQYPGFKEVR 694
GA A RV + VP +L V NL E TP L LF Y + V+
Sbjct: 297 GAISPLSAAAAAAAAAGRVALSGHSVPGGVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVK 356
Query: 695 MIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++ K A ++ D QA AM++L K+
Sbjct: 357 ILYNKKDSALIQMSDGNQAQLAMSHLNGQKM 387
>gb|AAH95372.1| Hypothetical protein LOC323490 [Danio rerio]
ref|XP_701862.1| PREDICTED: hypothetical protein XP_696770 [Danio rerio]
ref|NP_001018313.1| hypothetical protein LOC323490 [Danio rerio]
Length = 574
Score = 52.8 bits (125), Expect = 2e-05
Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 37/237 (15%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA V + D +A A + G Y+ T+RI ++
Sbjct: 210 LHQIFSKFGTVLKIITF-TKNNQFQALVQYSDGMTAQHAKLSLDGQNIYNACCTLRISFS 268
Query: 362 K-TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA---YPGVYG 529
K T ++ D + R+ + + + + A A+ G+ + Y G +G
Sbjct: 269 KLTSLNVKYNNDKS---RDYTRPDLPTGDSQPSFDAQTMAAAALTAPGIISASPYAGAHG 325
Query: 530 APQLTQIPIAGGQRVM------MPEIIVP------------------------NNILFVQ 619
PQ I A G + + + VP N++L V
Sbjct: 326 FPQAFAIQQAAGLSLQGMPAGALASLSVPGAAAAAAAAAAAGRLGLSGLTAAGNSVLLVS 385
Query: 620 NL-PHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
NL P TP L +LF Y V+++ K A V+ D TQA AM++L K+
Sbjct: 386 NLNPESVTPQCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQAQLAMSHLNGQKL 442
>gb|AAX69673.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma brucei]
gb|AAZ10381.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma brucei]
ref|XP_823893.1| U2 small nuclear ribonucleoprotein B [Trypanosoma brucei TREU927]
Length = 117
Score = 52.8 bits (125), Expect = 2e-05
Identities = 36/94 (38%), Positives = 52/94 (55%)
Frame = +2
Query: 203 SQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKTKSDII 382
+QFG ++DVL K+ GQA+VVF DVA+AT A + + FY + ++ YAK +S
Sbjct: 31 TQFGPVIDVLYCKSKSMYGQAFVVFTDVATATNARRELHERQFYGRIIQAFYAKRQS--- 87
Query: 383 AKADGTFVPRERRKRTDEKSEKKQKREHHHDAGA 484
AD P ERR+R D + E+ + D A
Sbjct: 88 FSAD----PGERRRR-DLRQERVSGGKRRRDTQA 116
>gb|AAW41787.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_569094.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
gb|EAL22309.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 282
Score = 52.0 bits (123), Expect = 4e-05
Identities = 29/100 (29%), Positives = 51/100 (51%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P+ T+Y L A+FS +G+++DV+A K +GQA+VVFE+ +AT
Sbjct: 25 PSPTLYVSGLETKTKKPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATA 84
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERR 421
AL+ + G FY++ + + + + + P+ RR
Sbjct: 85 ALRGLTGETFYNRELARLFISLPAIRLTPSREYHTPKNRR 124
>ref|XP_818122.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
ref|XP_810168.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gb|EAN96271.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma cruzi]
gb|EAN88317.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma cruzi]
Length = 114
Score = 50.8 bits (120), Expect = 9e-05
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y +L +QFG +L+V K+ GQA+VVF DVA+AT
Sbjct: 4 PKQTLYIRGLPDKVSEKEMRRALYLYCTQFGPVLEVSYRKSRDMYGQAFVVFSDVATATS 63
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRK---RTDEKSEKKQKRE 463
A + + FY + ++ YAK +S AD P ERR+ R + +S K+ RE
Sbjct: 64 ARRELNERQFYGRLVQAFYAKRQS---FSAD----PGERRRRDLRRERESAAKRLRE 113
>ref|XP_451928.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH02321.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 305
Score = 50.1 bits (118), Expect = 2e-04
Identities = 30/77 (38%), Positives = 41/77 (53%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
P+++L VQNLP + T L+ LF GFKEVR++ + + FVEY AT + L
Sbjct: 231 PHHVLLVQNLPKDVTQQELEKLFVS-DGFKEVRLVSVR-NLCFVEYDSTANATKVVETLG 288
Query: 776 SFKITKENQMVITYAKK 826
K + I YAKK
Sbjct: 289 HDHPFKNVTIKIGYAKK 305
>gb|AAZ09538.1| hypothetical protein, conserved [Leishmania major strain Friedlin]
ref|XP_847746.1| hypothetical protein LMJ_0723 [Leishmania major strain Friedlin]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04
Identities = 36/113 (31%), Positives = 54/113 (47%)
Frame = +2
Query: 122 PNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATE 301
P T+Y +L +QFG + VL K+ + GQA+VVF DV +AT
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 302 ALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKR 460
A + + FY + ++ YA ++ +A P ERR+R D EKK+ R
Sbjct: 64 ARRSLHDRMFYGRRIQAFYAHKQAFCVA-------PGERRRR-DLAREKKRLR 108
>ref|XP_500857.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG83108.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 113
Score = 48.9 bits (115), Expect = 4e-04
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKP--GIAFVEYGDETQATAAMNN 769
PNNILFV+NLP+E+T L LF ++ +++R K G AFV Y D AT A+
Sbjct: 9 PNNILFVKNLPYESTSDELYELFGRFGAVRQIRAGSEKDTRGTAFVVYEDIDDATEAVKT 68
Query: 770 LQSF 781
L F
Sbjct: 69 LSGF 72
Score = 39.7 bits (91), Expect = 0.22
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK 340
L +F +FG + + A +G A+VV+ED+ ATEA+K + GF + ++
Sbjct: 27 LYELFGRFGAVRQIRAGSEKDTRGTAFVVYEDIDDATEAVKTLSGFNYKNR 77
>gb|AAH17480.1| Heterogeneous nuclear ribonucleoprotein L-like [Homo sapiens]
ref|NP_612403.2| heterogeneous nuclear ribonucleoprotein L-like [Homo sapiens]
gb|AAY24302.1| unknown [Homo sapiens]
sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like (Stromal
RNA-regulating factor) (BLOCK24 protein)
Length = 542
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 185 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 242
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 243 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPS 302
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 303 RYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 361
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 362 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 397
>ref|XP_872202.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
L-like isoform 2 [Bos taurus]
Length = 536
Score = 48.5 bits (114), Expect = 5e-04
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA ++FE V A +A + G Y T++I+YA
Sbjct: 179 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 236
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 237 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPS 296
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 297 RYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 355
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 356 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 391
>emb|CAD98506.1| U1 snrnp, possible [Cryptosporidium parvum]
Length = 267
Score = 48.5 bits (114), Expect = 5e-04
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY SL +F+++GKI + F + KGQAW+ F + SA A
Sbjct: 25 NKTIYINNLNDSISIPKQKLSLEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAVSAVNA 84
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSD 376
+ G + K + + +A +S+
Sbjct: 85 VNNEIGTQIFGKHVNVSFAAKESE 108
>ref|XP_233805.3| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L-like
[Rattus norvegicus]
Length = 770
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 413 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 470
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 471 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPS 530
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 531 RYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 589
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 590 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 625
>dbj|BAE27500.1| unnamed protein product [Mus musculus]
Length = 670
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 313 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 370
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 371 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPS 430
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 431 RYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 489
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 490 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 525
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like
Length = 591
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 234 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 291
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 292 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPS 351
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 352 RYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 410
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 411 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 446
>dbj|BAE02506.1| unnamed protein product [Macaca fascicularis]
Length = 437
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 80 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 137
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 138 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPS 197
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 198 RYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 256
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 257 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 292
>gb|AAH12849.2| Heterogeneous nuclear ribonucleoprotein L-like [Mus musculus]
ref|NP_659051.2| heterogeneous nuclear ribonucleoprotein L-like [Mus musculus]
Length = 594
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 237 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 294
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 295 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPS 354
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 355 RYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 413
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 414 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 449
>dbj|BAB28521.1| unnamed protein product [Mus musculus]
Length = 588
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 231 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 288
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 289 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPS 348
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 349 RYRMGSRDTPELVAYPLPQASSSYMHGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 407
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 408 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 443
>gb|AAQ20084.2| stromal RNA regulating factor [Homo sapiens]
gb|AAN76189.1| BLOCK24 variant [Homo sapiens]
Length = 537
Score = 48.5 bits (114), Expect = 5e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 180 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 237
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 238 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPS 297
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 298 RYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 356
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 357 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 392
>ref|XP_414998.1| PREDICTED: similar to hypothetical protein BC008217, partial
[Gallus gallus]
Length = 479
Score = 48.1 bits (113), Expect = 6e-04
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA V FE V A +A + G Y T++I+YA
Sbjct: 122 LYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVFCAQKAKAALNGADIYAGCCTLKIEYA 179
Query: 362 K-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTAYPG 520
+ T+ ++I + + + +R K ++Q H + G G + P
Sbjct: 180 RPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPS 239
Query: 521 VY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPG 679
Y P+L P+ M +++ V L H+ ++ LFC Y
Sbjct: 240 RYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGN 298
Query: 680 FKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 299 IEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 334
>ref|XP_667641.1| U1 snrnp [Cryptosporidium hominis TU502]
gb|EAL37403.1| U1 snrnp [Cryptosporidium hominis]
Length = 267
Score = 47.4 bits (111), Expect = 0.001
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +2
Query: 125 NVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEA 304
N TIY +L +F+++GKI + F + KGQAW+ F + SA A
Sbjct: 25 NKTIYVNNLNDSISIPKQKLALEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAVSAVNA 84
Query: 305 LKRMQGFPFYDKTMRIQYAKTKSD 376
+ G + K + + +A +S+
Sbjct: 85 VNNEIGTQIFGKHVNVSFAAEESE 108
>ref|XP_708601.1| PREDICTED: similar to polypyrimidine tract binding protein 2
isoform 4 [Danio rerio]
Length = 512
Score = 47.0 bits (110), Expect = 0.001
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 11/199 (5%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG ++ ++ F T ++ QA + F D +A +A + G Y+ T+RI ++
Sbjct: 191 LQQIFSKFGTVMKIITF-TKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFS 249
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTA-----YPGVY 526
K + + K ++KS + E G + + A P +
Sbjct: 250 KLVNLNV-------------KYNNDKSRDYTRPELPAGDGQPPVDPSMAAALSKDSPSLL 296
Query: 527 GA---PQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHE-TTPMMLQMLFCQYPGFKEVR 694
GA A RV + VP +L V NL E TP L LF Y + V+
Sbjct: 297 GAISPLSAAAAAAAAAGRVALSGHSVPGGVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVK 356
Query: 695 MIEAKPGIAFVEYGDETQA 751
++ K A ++ D QA
Sbjct: 357 ILYNKKDSALIQMSDGNQA 375
>emb|CAG58376.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_445465.1| unnamed protein product [Candida glabrata]
Length = 301
Score = 47.0 bits (110), Expect = 0.001
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Frame = +2
Query: 338 KTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYP 517
K +R +Y K + T R +++R K K + A + + VTA
Sbjct: 141 KALRTKYRKEDLENNQHKLETLKLRRKQRRLRSKLRSKGVDDEQIKAAVTGLTQKVTATI 200
Query: 518 GVYGAPQLTQIPIAGGQRVMMPE-----IIVPNNILFVQNLPHETTPMMLQMLFCQYPGF 682
+ +P+A Q P+ ++ PN+IL + +LP T +++
Sbjct: 201 N-----EKKPVPLALKQETRPPKQDNEKLVEPNSILLLTDLPSGCTSDQIKVNI-PTKEL 254
Query: 683 KEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITK-ENQMVITYAKK 826
KE+R++ + +AFVEY D AT A+ + K+TK N + +TYAKK
Sbjct: 255 KEIRLVSVR-NVAFVEYEDIEAATVALKEMVP-KLTKLGNNIKVTYAKK 301
>ref|XP_698115.1| PREDICTED: similar to ROD1 regulator of differentiation 1 [Danio
rerio]
Length = 469
Score = 46.6 bits (109), Expect = 0.002
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 13/204 (6%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
+ +FS+FG +L ++ F T ++ QA + + D +A A + G Y+ T+R++++
Sbjct: 176 INVIFSKFGTVLKIITF-TKNNQFQALLQYADPMNAHHAKVALDGQNIYNGCCTLRVEFS 234
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAG--------ASQIGMGVTAYP 517
K S + K ++KS + + G + G+ + A P
Sbjct: 235 KLTSLNV-------------KYNNDKSRDFTRLDLPSGDGQPTLDPTMQTAFGLSMQAMP 281
Query: 518 GVYGAPQLTQIPIAGGQRV--MMPEIIVPNNILFVQNL-PHETTPMMLQMLFCQYPGFKE 688
G G + + G + M P I +++L V NL P +P L +LF Y
Sbjct: 282 GALGPLTIPSSAMTGRMAIHGMTPTAI--HSVLLVSNLNPDSISPHELFILFGVYGDVHR 339
Query: 689 VRMIEAKPGIAFVEYGDETQATAA 760
V+++ K A ++ D TQA A
Sbjct: 340 VKILFNKKENALIQMADATQAQLA 363
>gb|AAS51549.1| ADL371Cp [Ashbya gossypii ATCC 10895]
ref|NP_983725.1| ADL371Cp [Eremothecium gossypii]
Length = 284
Score = 46.6 bits (109), Expect = 0.002
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN +L VQ+LP + T L +F +VR+++ + +AFV+Y D ATA N L
Sbjct: 211 PNKVLLVQDLPTDITEQELVDIFAN-DKLLQVRLVQVRQ-LAFVDYADVQSATAVKNKLG 268
Query: 776 SFKITKENQMVITYAK 823
+ + K +I YAK
Sbjct: 269 TNYVIKNQTTIIGYAK 284
>emb|CAA50378.1| U1 snRNP A protein [Saccharomyces cerevisiae]
emb|CAA85076.1| MUD1 [Saccharomyces cerevisiae]
ref|NP_009677.1| U1 snRNP A protein, homolog of human U1-A; involved in nuclear mRNA
splicing; Mud1p [Saccharomyces cerevisiae]
sp|P32605|RU1A_YEAST U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1-A)
Length = 298
Score = 44.7 bits (104), Expect = 0.007
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN +L +QNLP TT +L + E+R++ + +AFVEY AT N L
Sbjct: 225 PNKVLLIQNLPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLG 282
Query: 776 SFKITKENQMVITYAK 823
S + N + I +AK
Sbjct: 283 STYKLQNNDVTIGFAK 298
>ref|XP_723243.1| hypothetical protein CaO19_12210 [Candida albicans SC5314]
gb|EAL04539.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
Length = 131
Score = 44.7 bits (104), Expect = 0.007
Identities = 28/111 (25%), Positives = 54/111 (48%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ P+ T+Y +L +FS FG I+ + G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINL-----QNGFAFIIFSNLNSA 82
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEK 448
T AL+ ++ F+DK + + YA +S +I+ +E++K D+ E+
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKVIS--------QEKQKLQDDNDEE 125
>emb|CAA55621.1| small nuclear ribonucleoprotein [Saccharomyces cerevisiae]
Length = 301
Score = 44.7 bits (104), Expect = 0.007
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
PN +L +QNLP TT +L + E+R++ + +AFVEY AT N L
Sbjct: 228 PNKVLLIQNLPSGTTEQLLSQILGN-EALVEIRLVSVR-NLAFVEYETVADATKIKNQLG 285
Query: 776 SFKITKENQMVITYAK 823
S + N + I +AK
Sbjct: 286 STYKLQNNDVTIGFAK 301
>emb|CAA64866.1| mec-8 [Caenorhabditis elegans]
Length = 312
Score = 44.3 bits (103), Expect = 0.009
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +2
Query: 608 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG-IAFVEYGDETQATAAMNNLQSFK 784
LFV NL E L+ +F + GF +R+ +AFVEY D +AT AM +LQ F+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 785 ITKENQ--MVITYAK 823
IT ++ + I YA+
Sbjct: 290 ITANDRGGLRIEYAR 304
>emb|CAB03111.1| Hypothetical protein F46A9.6 [Caenorhabditis elegans]
emb|CAA64867.1| mec-8 [Caenorhabditis elegans]
ref|NP_492508.1| MEChanosensory abnormality family member (mec-8) [Caenorhabditis
elegans]
emb|CAB02754.1| Hypothetical protein F46A9.6 [Caenorhabditis elegans]
Length = 312
Score = 44.3 bits (103), Expect = 0.009
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +2
Query: 608 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG-IAFVEYGDETQATAAMNNLQSFK 784
LFV NL E L+ +F + GF +R+ +AFVEY D +AT AM +LQ F+
Sbjct: 230 LFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQ 289
Query: 785 ITKENQ--MVITYAK 823
IT ++ + I YA+
Sbjct: 290 ITANDRGGLRIEYAR 304
>ref|XP_884642.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
L-like isoform 5 [Bos taurus]
Length = 512
Score = 44.3 bits (103), Expect = 0.009
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 6/206 (2%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L V + GK+ ++ FK ++ QA ++FE V A +A + G Y T++I+YA
Sbjct: 179 LYTVCNPVGKVQRIVIFK--RNGIQAMLMFESVLCAQKAKAALNGADIYAGCCTLKIEYA 236
Query: 362 K-TKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYP-GVYGAP 535
+ T+ ++I R D S K + Y G P
Sbjct: 237 RPTRLNVI--------------RNDNDSWDYTKPYLGRRGNFGGVPSSACRYRMGSRDTP 282
Query: 536 QLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPGFKEVRMIEAK 709
+L P+ M +++ V L H+ ++ LFC Y ++V+ ++
Sbjct: 283 ELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGNIEKVKFMKTI 341
Query: 710 PGIAFVEYGDETQATAAMNNLQSFKI 787
PG A VE GDE A+ +L + K+
Sbjct: 342 PGTALVEMGDEYAVERAVTHLNNVKL 367
>gb|AAH04763.1| Hnrpll protein [Mus musculus]
Length = 340
Score = 44.3 bits (103), Expect = 0.009
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Frame = +2
Query: 260 QAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYAK-TKSDIIAKADGT--FVPRERRK 424
QA V FE V A +A + G Y T++I+YA+ T+ ++I + + + +
Sbjct: 5 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGR 64
Query: 425 RTDEKSEKKQKREHHHDAGASQIGMG----VTAYPGVY-----GAPQLTQIPIAGGQRVM 577
R K ++Q H + G G + P Y P+L P+
Sbjct: 65 RDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSY 124
Query: 578 MPEIIVPNNILFVQNLPHETTPMMLQM--LFCQYPGFKEVRMIEAKPGIAFVEYGDETQA 751
M +++ V L H+ ++ LFC Y ++V+ ++ PG A VE GDE
Sbjct: 125 MHGGSPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAV 183
Query: 752 TAAMNNLQSFKI 787
A+ +L + K+
Sbjct: 184 ERAVTHLNNVKL 195
>ref|XP_723434.1| hypothetical protein CaO19_4748 [Candida albicans SC5314]
gb|EAL04736.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
Length = 131
Score = 44.3 bits (103), Expect = 0.009
Identities = 29/111 (26%), Positives = 53/111 (47%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
+ P+ T+Y +L +FS FG I+ + G A+++F ++ SA
Sbjct: 28 LKPSQTLYVKNLNTKINKKILLHNLYLLFSAFGDIISINL-----QNGFAFIIFSNLNSA 82
Query: 296 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEK 448
T AL+ ++ F+DK + + YA +S I+ +E++K DE E+
Sbjct: 83 TLALRNLKNQDFFDKPLVLNYAVKESKAIS--------QEKQKLQDENDEE 125
>gb|AAH99272.1| Unknown (protein for MGC:116464) [Xenopus laevis]
Length = 391
Score = 43.5 bits (101), Expect = 0.015
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Frame = +2
Query: 200 FSQFGKILDVLAFKTLKH------KGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYA 361
FSQFG ++ K +K KG A+V F+ A A++ M G FY+K + +QYA
Sbjct: 118 FSQFGNLISTP--KIMKDPESGGSKGFAFVSFDSFDGADHAIQSMNGQFFYNKQIVVQYA 175
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGM----GVTAYPGVYG 529
K D + G+ R+R + K K ++G S GM GV PG+ G
Sbjct: 176 -YKKDSNGERYGSEAERKRAANLNPKL-KPNTTFAAPNSGVSMQGMPQVGGVNPIPGMPG 233
Query: 530 APQLTQIP 553
P + +P
Sbjct: 234 MPGMPGMP 241
>gb|AAR97857.1| sans fille [Drosophila arizonae]
Length = 76
Score = 43.5 bits (101), Expect = 0.015
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +2
Query: 332 YDKTMRIQYAKTKSDIIAKADGTFVPRERRKR-------TDEKSEKKQKREHHHDAGASQ 490
YDK MRI Y+K+ SDI+AK GT+ R ++ + +EK +KK+K+ +A +
Sbjct: 1 YDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKKKKQSSAENANPNT 60
Query: 491 IGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLP 628
T+ P PN ILF+ NLP
Sbjct: 61 ----------------QTEQP--------------PNQILFLTNLP 76
>ref|XP_614044.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
L-like isoform 1 [Bos taurus]
Length = 542
Score = 43.1 bits (100), Expect = 0.020
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQA----WVVFEDVASATEALKRMQGFPFYDK--TMR 349
L V + GK+ ++ FK + +++FE V A +A + G Y T++
Sbjct: 179 LYTVCNPVGKVQRIVIFKRNGIQAMVEYPLFLMFESVLCAQKAKAALNGADIYAGCCTLK 238
Query: 350 IQYAK-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VT 508
I+YA+ T+ ++I + + + +R K ++Q H + G G +
Sbjct: 239 IEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLL 298
Query: 509 AYPGVY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFC 667
P Y P+L P+ M +++ V L H+ ++ LFC
Sbjct: 299 PLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFC 357
Query: 668 QYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
Y ++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 358 LYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 397
>ref|XP_532938.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein
L-like [Canis familiaris]
Length = 548
Score = 43.1 bits (100), Expect = 0.020
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAW---VVFEDVASATEALKRMQGFPFYDK--TMRI 352
L V + GK+ ++ FK ++ QA ++FE V A +A + G Y T++I
Sbjct: 188 LYTVCNPVGKVQRIVIFK--RNGIQAMTSDLMFESVLCAQKAKAALNGADIYAGCCTLKI 245
Query: 353 QYAK-TKSDIIAKADGT--FVPRERRKRTDEKSEKKQKREHHHDAGASQIGMG----VTA 511
+YA+ T+ ++I + + + +R K ++Q H + G G +
Sbjct: 246 EYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLP 305
Query: 512 YPGVY-----GAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQM--LFCQ 670
P Y P+L P+ M +++ V L H+ ++ LFC
Sbjct: 306 LPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL-HQLKMNCSRVFNLFCL 364
Query: 671 YPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKI 787
Y ++V+ ++ PG A VE GDE A+ +L + K+
Sbjct: 365 YGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKL 403
>ref|XP_635793.1| hypothetical protein DDB0188830 [Dictyostelium discoideum]
gb|EAL62280.1| hypothetical protein DDB0188830 [Dictyostelium discoideum]
Length = 459
Score = 43.1 bits (100), Expect = 0.020
Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 22/222 (9%)
Frame = +2
Query: 188 LTAVFSQFGKILD---VLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQY 358
L+ +FS +G++++ ++ T +GQ V + D SA A+K + GF D
Sbjct: 235 LSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSLNGFILQD------- 287
Query: 359 AKTKSDIIAKADGTFVPRERRKRTDEKSEK---------KQKREHHHDAGASQIGMGVTA 511
K I+ AD +++R++ +K + +Q+++ G
Sbjct: 288 -PEKPLIVRFADNEDEKKQKRQKLQQKQVRQNMRFSPYPQQQQQQQQQQQQMMNSSGAMM 346
Query: 512 YPGVYGAPQLTQIP--IAGGQRVMMPEIIVPN---NILFVQNLPHETTPMMLQMLFCQYP 676
YP P + +P + G P P L+V NLP + +L LF
Sbjct: 347 YPFYQNMPTMNSLPNSMIGSSSQPPPGGKNPGTDPTNLYVYNLPSDADDSLLYRLFSPCG 406
Query: 677 GFKEVRMIEAKP-----GIAFVEYGDETQATAAMNNLQSFKI 787
V+++ + G FV + +A+N++ ++
Sbjct: 407 AIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSINGVQV 448
Score = 38.9 bits (89), Expect = 0.37
Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 9/221 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILD---VLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L ++FS FG+I ++ T +G +V F+DVASA A+ M G +KT+ ++
Sbjct: 114 TLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVR 173
Query: 356 YAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGAP 535
+A + + ++ T D+ + + ++ + I
Sbjct: 174 FANSDPN----SNNT---NNSNNNNDDDNNNNNNNNNSNNNNTNNI-------------- 212
Query: 536 QLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMI----- 700
E + NN+ F++ LP E L LF Y E +++
Sbjct: 213 ---------------DEQKISNNV-FIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITT 256
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKI-TKENQMVITYA 820
A G V Y D A A+ +L F + E +++ +A
Sbjct: 257 NASRGQGLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFA 297
>ref|XP_455748.1| unnamed protein product [Kluyveromyces lactis]
emb|CAG98456.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 589
Score = 43.1 bits (100), Expect = 0.020
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKT 367
L + F FG+I+ V K KG +V + D SA A+ +MQGFP + +R+ + ++
Sbjct: 332 LRSYFQPFGQIVYV---KIPVGKGCGFVQYVDRISAETAISKMQGFPIGNSRIRLSWGRS 388
Query: 368 KSDIIAKADGTFV-----PRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAYPGVYGA 532
A + ++++++ ++ +++Q+++ HH + SQ M +
Sbjct: 389 AKQAAAMQQAMTLALQQQQQQQQQQQQQQQQQQQQQQLHHYSYQSQPAMPSNYAYTLDSL 448
Query: 533 PQLTQIPIAGG 565
P +PI+ G
Sbjct: 449 PGNDYVPISHG 459
>dbj|BAE37269.1| unnamed protein product [Mus musculus]
Length = 520
Score = 42.7 bits (99), Expect = 0.026
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 27/214 (12%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L +FS+FG +L ++ F T ++ QA + + D SA A + G Y+ T+RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 362 KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHDAGASQIGMGVTAY--------- 514
K S + + R S+ + GA I M + Y
Sbjct: 258 KLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGI-MSASPYAGAGFPPTF 316
Query: 515 ----------PGVYGAPQLTQIP----IAGGQRVMMPEII-VPNNILFVQNL-PHETTPM 646
P V+GA IP A R+ +P + N++L V NL P TP
Sbjct: 317 AIPQAAGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPERVTPQ 376
Query: 647 MLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQ 748
L +LF Y + V+++ K A V+ E Q
Sbjct: 377 SLFILFGVYGDVQRVKILFNKKENALVQLPREGQ 410
>ref|XP_646953.1| hypothetical protein DDB0202330 [Dictyostelium discoideum]
gb|EAL73083.1| hypothetical protein DDB0202330 [Dictyostelium discoideum]
Length = 359
Score = 42.7 bits (99), Expect = 0.026
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQ 775
P+ +LFV+++P + + LF PG+ M+ KP AFVE+ D AT AM
Sbjct: 8 PSRVLFVKDIPQRVSYDAFENLFKSLPGYL---MMRRKPHFAFVEFKDREFATMAMIKFT 64
Query: 776 SFKITKENQMVITY 817
+KI ++N+ +Y
Sbjct: 65 GYKI-RDNRDSYSY 77
Score = 38.5 bits (88), Expect = 0.49
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 593 VPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMI--EAKPGIAFVEYGDETQATAAMN 766
+P + LFV NLP + T L +LF GF +R+I E K + F ++ D + A+
Sbjct: 272 MPCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLPMCFCDFIDTQSSMFALE 331
Query: 767 NLQSFKI 787
LQ F++
Sbjct: 332 FLQGFRM 338
>ref|XP_707541.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein L
(hnRNP L) (P/OKcl.14) isoform 8 [Danio rerio]
Length = 507
Score = 42.7 bits (99), Expect = 0.026
Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 23/220 (10%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDK--TMRIQYA 361
L + + G + ++ F+ K+ QA V F+ V SA A + G Y T++I+YA
Sbjct: 151 LYTICNNCGPVQRIVIFR--KNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYA 208
Query: 362 K-TKSDIIAKADGTFVPRERRKRTDEKSEKKQKRE--------HHHDAG----------- 481
K T+ ++ T+ T + + KR+ H D G
Sbjct: 209 KPTRLNVFKNDQDTWDYTNPSLGTQDMNANPNKRQRQPALLGDHPPDYGYEGRRMGPPMS 268
Query: 482 ASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNL-PHETTPMMLQM 658
A + G Y YG P P G P ++ V L P + +
Sbjct: 269 APRRGGASQRYSAQYGGPPPPP-PGEYGAHADSP-------VIMVYGLDPVKINADRVFN 320
Query: 659 LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQS 778
+FC Y + V+ +++KPG A VE GD A+++L +
Sbjct: 321 IFCLYGNVERVKFMKSKPGAAMVEMGDCYAVDRAISHLNN 360
>gb|AAH80452.1| MGC89658 protein [Xenopus tropicalis]
ref|NP_001007946.1| MGC89658 protein [Xenopus tropicalis]
emb|CAJ83214.1| serine-arginine repressor protein (35 kDa) [Xenopus tropicalis]
Length = 253
Score = 42.4 bits (98), Expect = 0.034
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Frame = +2
Query: 119 PPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDV---LAFKTLKHKGQAWVVFEDVA 289
PPN +++ L F ++G I+DV L F T + +G A++ FEDV
Sbjct: 7 PPNTSLFVRNVADATRPE----DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQFEDVR 62
Query: 290 SATEALKRMQGFPFYDKTMRIQYA----KTKSDIIAKADGTFVPRERRKRTDEKSEKKQK 457
A +AL + + + IQ+A KT + +K P +RR+ + +
Sbjct: 63 DAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHACSPVDRRRSRSHSRRRTRS 122
Query: 458 REHHHDAGASQIG 496
R D G + G
Sbjct: 123 RSSSWDRGRRRSG 135
>emb|CAI75908.1| RNA splicing factor, putative [Theileria annulata]
ref|XP_955384.1| RNA splicing factor [Theileria annulata strain Ankara]
Length = 643
Score = 42.4 bits (98), Expect = 0.034
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTL--KHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYA 361
L +FS FG I+DV +T + KG A++ F+ A EAL M GF + +++ YA
Sbjct: 438 LNQLFSPFGNIIDVALARTDNGESKGYAYIRFKRWNEAKEALNVMNGFDINGQQIKVAYA 497
Query: 362 KTKSD 376
T+ D
Sbjct: 498 NTRKD 502
>ref|XP_762815.1| splicing factor [Theileria parva strain Muguga]
gb|EAN30532.1| splicing factor, putative [Theileria parva]
Length = 644
Score = 42.0 bits (97), Expect = 0.044
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTL--KHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYA 361
L +FS FG I+DV +T KG A++ F+ A EAL M GF + +++ YA
Sbjct: 439 LNQLFSPFGNIIDVALARTDDGNSKGYAYIRFKRWNEAKEALNVMNGFDINGQQIKVAYA 498
Query: 362 KTKSD 376
T+ D
Sbjct: 499 NTRKD 503
>ref|XP_753803.1| hypothetical protein Afu5g08330 [Aspergillus fumigatus Af293]
gb|EAL91765.1| RNA binding protein [Aspergillus fumigatus Af293]
Length = 616
Score = 42.0 bits (97), Expect = 0.044
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG-IAFVEYGDETQATAAMNNL 772
P N L+V NLP +T+ L+ LF + G+K + + G + FVE+ + A+ A+N L
Sbjct: 405 PCNTLYVGNLPPDTSEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFDEVAMASKALNEL 464
Query: 773 QSFKITKENQ 802
+K++ +
Sbjct: 465 YGYKLSNSTK 474
>ref|XP_917567.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome) [Mus
musculus]
Length = 152
Score = 42.0 bits (97), Expect = 0.044
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I+++L K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKSDIIAKADGTFVPRER 418
A S + PR R
Sbjct: 83 QATKPSFESGRRGPPTPPRSR 103
>ref|XP_501900.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG82220.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 318
Score = 42.0 bits (97), Expect = 0.044
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAF---KTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQY 358
+ VFSQFG V KT K +G AW+ +ED S A+ G +TMR+ +
Sbjct: 47 IATVFSQFGNPTHVKLSRDQKTGKSRGFAWLKYEDQRSTVLAVDNFNGVELLGRTMRVDH 106
Query: 359 A------------------KTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHH 469
K ++ + + G ER D +++ +R HH
Sbjct: 107 TYYESRDEEGDAKEVEMLNKARNQRLGRQSGDGGGDERNDHEDRSRDERDRRSHH 161
>ref|XP_586588.2| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 1 [Bos taurus]
Length = 294
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_880704.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 5 [Bos taurus]
Length = 296
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_866411.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 4 [Canis familiaris]
Length = 296
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>emb|CAA80599.1| hnRNP G protein [Homo sapiens]
Length = 391
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>dbj|BAE00972.1| unnamed protein product [Macaca fascicularis]
Length = 391
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>gb|AAH07435.1| RNA binding motif protein, X chromosome [Homo sapiens]
emb|CAI39448.1| RNA binding motif protein, X-linked [Homo sapiens]
ref|XP_866434.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 6 [Canis familiaris]
ref|XP_852809.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 1 [Canis familiaris]
gb|AAR28036.1| heterogeneous nuclear ribonucleoprotein G [Homo sapiens]
gb|AAK58567.1| RBMX [Homo sapiens]
ref|NP_002130.2| RNA binding motif protein, X-linked [Homo sapiens]
gb|AAH06550.1| RNA binding motif protein, X-linked [Homo sapiens]
sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome) (Glycoprotein p43)
Length = 391
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>gb|AAH03710.1| RNA binding motif protein, X chromosome [Mus musculus]
emb|CAB51362.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
dbj|BAE22448.1| unnamed protein product [Mus musculus]
ref|NP_035382.1| RNA binding motif protein, X-linked [Mus musculus]
Length = 391
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_881201.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 10 [Bos taurus]
ref|XP_870506.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 2 [Bos taurus]
Length = 391
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>emb|CAB51361.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
dbj|BAE37998.1| unnamed protein product [Mus musculus]
Length = 289
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_866389.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 2 [Canis familiaris]
Length = 289
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>gb|AAH97479.1| Hypothetical protein LOC302855 [Rattus norvegicus]
ref|NP_001020834.1| hypothetical protein LOC302855 [Rattus norvegicus]
Length = 390
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_880849.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 7 [Bos taurus]
Length = 388
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_880773.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 6 [Bos taurus]
Length = 369
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_452046.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH02439.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 114
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = +2
Query: 116 IPPNVTIYXXXXXXXXXXXXXXXSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 295
I PN T+Y SL +F+ +G+++ V T K +GQA++ F+ V A
Sbjct: 28 IEPNNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEA 85
Query: 296 TEALKRMQGFPFYDKTMRIQYAK 364
AL ++ F++K + +Q++K
Sbjct: 86 NLALLSLKDELFFNKPLVLQFSK 108
>pir||S41766 heterogeneous nuclear ribonucleoprotein G - human
Length = 437
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>emb|CAG31684.1| hypothetical protein [Gallus gallus]
Length = 385
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>emb|CAE60190.1| Hypothetical protein CBG03748 [Caenorhabditis briggsae]
Length = 305
Score = 41.6 bits (96), Expect = 0.057
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +2
Query: 608 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG-IAFVEYGDETQATAAMNNLQSFK 784
LFV NL E L+ +F + GF +R+ +AFVEY D +AT AM LQ F+
Sbjct: 223 LFVANLSAEVNEDQLRGVFKAFTGFTRLRLHNKNGSCVAFVEYSDLQKATQAMLALQGFQ 282
Query: 785 ITKENQ--MVITYAK 823
++ ++ + I YA+
Sbjct: 283 VSANDRGGLRIEYAR 297
>ref|XP_853786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) [Canis familiaris]
Length = 588
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 142 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 201
Query: 356 YAKTKS 373
A S
Sbjct: 202 QATKPS 207
>dbj|BAC42069.1| unknown protein [Arabidopsis thaliana]
Length = 287
Score = 41.6 bits (96), Expect = 0.057
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 608 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPG--IAFVEYGDETQATAAMNNLQSF 781
LF+ NL T L+ L +YPGF + I A+ G +AF ++ + QAT AMN+LQ
Sbjct: 207 LFIANLGPNCTEDELKQLLSRYPGF-HILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 265
Query: 782 KITKENQ--MVITYAK 823
++ ++ M I YA+
Sbjct: 266 LLSSSDRGGMHIEYAR 281
>ref|XP_380712.1| hypothetical protein FG00536.1 [Gibberella zeae PH-1]
gb|EAA68572.1| hypothetical protein FG00536.1 [Gibberella zeae PH-1]
Length = 173
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 197 VFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQY------ 358
+F +FG I V KG A+VV+EDV A +A ++ GF F ++ + + Y
Sbjct: 90 LFGKFGPIRQVRQGIANNTKGTAFVVYEDVTDAKQACDKLNGFNFQNRYLVVLYHQPDKM 149
Query: 359 AKTKSDIIAKAD 394
AK+K D+ A+ +
Sbjct: 150 AKSKEDLEARRE 161
Score = 40.0 bits (92), Expect = 0.17
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 575 MMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVR--MIEAKPGIAFVEYGDETQ 748
+ PE+ N LFV+NL + TP L LF ++ ++VR + G AFV Y D T
Sbjct: 65 LAPEV---NRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIANNTKGTAFVVYEDVTD 121
Query: 749 ATAAMNNLQSFKITKENQMVITY 817
A A + L F + +V+ Y
Sbjct: 122 AKQACDKLNGFNF-QNRYLVVLY 143
>ref|XP_880626.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA-binding motif protein, X chromosome)
(Glycoprotein p43) isoform 4 [Bos taurus]
Length = 220
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_866399.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 3 [Canis familiaris]
Length = 220
Score = 41.6 bits (96), Expect = 0.057
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>gb|AAS52227.1| ADR307Wp [Ashbya gossypii ATCC 10895]
ref|NP_984403.1| ADR307Wp [Eremothecium gossypii]
Length = 566
Score = 41.2 bits (95), Expect = 0.075
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Frame = +2
Query: 188 LTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAKT 367
L A F FG+I+ V K KG +V + D +SA A+ +MQGFP + +R+ + ++
Sbjct: 298 LRAYFQPFGQIVYV---KIPVGKGCGFVQYVDRSSAENAIAKMQGFPIGNSRVRLSWGRS 354
Query: 368 KSDIIAKADGTFVPRERRKRTDEKSEK-----KQKREHHHDAGASQIGMGVTAYP 517
A + +++++ ++ ++ Q+ ++ H Q ++A P
Sbjct: 355 AKQTAAMQQAFAIALQQQQQQQQQQQQARPQHSQQHQYQHQQHQQQPQHVISAQP 409
>ref|NP_701596.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gb|AAN36320.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
Length = 875
Score = 41.2 bits (95), Expect = 0.075
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 608 LFVQNLPHETTPMMLQMLFCQYPGFKE--VRMIEAKPGIAFVEYGDETQATAAMNNLQSF 781
L+V+N P T L+ LF Y V+M F+ Y D A AM+NL
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAESAKNAMDNLNGK 254
Query: 782 KITKENQMVITYAKK 826
KIT + Q+ TY K
Sbjct: 255 KITDDGQIDETYDPK 269
>ref|XP_525735.1| PREDICTED: hypothetical protein XP_525735 [Pan troglodytes]
Length = 1069
Score = 41.2 bits (95), Expect = 0.075
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Frame = +2
Query: 269 VVFEDVASATEALKRMQGFPFYDK--TMRIQYAK-TKSDIIAKADGT--FVPRERRKRTD 433
++FE V A +A + G Y T++I+YA+ T+ ++I + + + +R
Sbjct: 530 LMFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDR 589
Query: 434 EKSEKKQKREHHHDAGASQIGMG----VTAYPGVY-----GAPQLTQIPIAGGQRVMMPE 586
K ++Q H + G G + P Y P+L P+ M
Sbjct: 590 GKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHG 649
Query: 587 IIVPNNILFVQNLPHETTPMMLQM--LFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAA 760
+++ V L H+ ++ LFC Y ++V+ ++ PG A VE GDE A
Sbjct: 650 GNPSGSVVMVSGL-HQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERA 708
Query: 761 MNNLQSFKI 787
+ +L + K+
Sbjct: 709 VTHLNNVKL 717
>dbj|BAC31099.1| unnamed protein product [Mus musculus]
gb|AAH89350.1| RNA binding motif protein, X chromosome retrogene [Mus musculus]
gb|AAH11441.1| Rbmxrt protein [Mus musculus]
ref|NP_033059.2| RNA binding motif protein, X chromosome retrogene [Mus musculus]
Length = 388
Score = 41.2 bits (95), Expect = 0.075
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I+++L K T K +G A+V FE A A +A + M G K ++++
Sbjct: 23 ALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Query: 356 YAKTKS 373
A S
Sbjct: 83 QATKPS 88
>ref|XP_520521.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) [Pan troglodytes]
Length = 396
Score = 41.2 bits (95), Expect = 0.075
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A+V FE A A +A + M G K + ++
Sbjct: 163 ALEAVFGKYGRIVEVLLMKDHETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIEVE 222
Query: 356 YAKTKS 373
A S
Sbjct: 223 QANEPS 228
>gb|AAD01997.1| heterogeneous nuclear ribonucleoprotein G [Macropus eugenii]
Length = 394
Score = 40.8 bits (94), Expect = 0.098
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Frame = +2
Query: 185 SLTAVFSQFGKILDVLAFK---TLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQ 355
+L AVF ++G+I++VL K T K +G A++ FE A A +A + M G K+++++
Sbjct: 23 ALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAKDAARDMNGKLLDGKSIKVE 82
Query: 356 YA 361
A
Sbjct: 83 QA 84
>ref|NP_683582.2| RNA binding / nucleic acid binding [Arabidopsis thaliana]
gb|AAN28831.1| At3g21211/At3g21211 [Arabidopsis thaliana]
gb|AAK32800.1| At3g21211 [Arabidopsis thaliana]
dbj|BAC42798.1| unknown protein [Arabidopsis thaliana]
Length = 339
Score = 40.8 bits (94), Expect = 0.098
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Frame = +2
Query: 533 PQLTQIPIAGGQRVMMPEIIVPN---NILFVQNLPHETTPMMLQMLFCQYPGFKEVRMI- 700
P T PIA + + I N N LF+ NL L+ L PGFK+++++
Sbjct: 207 PMPTPPPIAAPSSYVPVQNIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILR 266
Query: 701 EAKPGIAFVEYGDETQATAAMNNLQSFKITKENQ--MVITYAK 823
+ + + F+E+ D AT +NLQ I M I Y+K
Sbjct: 267 QERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSK 309
>ref|XP_656357.1| U1 small nuclear ribonucleoprotein subunit [Entamoeba histolytica
HM-1:IMSS]
gb|EAL50974.1| U1 small nuclear ribonucleoprotein subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 509
Score = 40.8 bits (94), Expect = 0.098
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGI----AFVEYGDETQATAAM 763
PN + V LP +T +LQ LF +Y K++ +I+ GI AFVEY ++A A
Sbjct: 104 PNRTIVVLRLPKKTDESILQRLFSEYGEIKKIVIIKDLKGINKGYAFVEYNHRSEAERAC 163
Query: 764 NNLQSFKITKENQMVITYAKK 826
+I E ++++ +K
Sbjct: 164 RRANGMRI--EEKIIVVEMEK 182
>gb|EAR84555.1| polypyrimidine tract-binding protein [Tetrahymena thermophila
SB210]
Length = 829
Score = 40.8 bits (94), Expect = 0.098
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +2
Query: 197 VFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQYAK 364
+FS +G I+ ++ +K K QA + FE+ + AT A + + P+Y+ ++I Y+K
Sbjct: 524 LFSNYGNIVKIIF---MKQKRQALIEFEETSQATAAKENLNNLPYYNAQIKIDYSK 576
>emb|CAA64070.1| Neosin [Mus musculus]
Length = 153
Score = 40.4 bits (93), Expect = 0.13
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +2
Query: 578 MPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATA 757
+PE +V LF+ NLP E T ++ LF QY E +I+ FV D+T A
Sbjct: 16 LPEALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAED 72
Query: 758 AMNNLQSFKI 787
A+ NL +K+
Sbjct: 73 AIRNLHHYKL 82
>emb|CAD33925.1| proline rich protein 3 [Cicer arietinum]
Length = 284
Score = 40.4 bits (93), Expect = 0.13
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 596 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMI-EAKPGIAFVEYGDETQATAAMNNL 772
P N LF+ NL ++ LF PGFK+++++ + + + F+E+ D AT +NL
Sbjct: 178 PCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNL 237
Query: 773 QSFKITKENQ--MVITYAK 823
Q I M I Y+K
Sbjct: 238 QGAVIPSSGSVGMRIQYSK 256
>ref|NP_001014392.1| hypothetical protein LOC541556 [Danio rerio]
gb|AAH91794.1| Hypothetical LOC541556 [Danio rerio]
Length = 539
Score = 40.0 bits (92), Expect = 0.17
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 188 LTAVFSQFGKILDV---LAFKTLKHKGQAWVVFEDVASATEALKRMQGFPFYDKTMRIQY 358
L +F FGKI + + +T + KG ++ F D A +AL+++ GF + M++ +
Sbjct: 280 LRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGH 339
Query: 359 AKTKSDIIAKADGTFVPRERRKRT 430
+SD A + +F+ + +RT
Sbjct: 340 VTERSD--ASSASSFLDNDELERT 361
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,980,818,910
Number of Sequences: 3454138
Number of extensions: 40961604
Number of successful extensions: 125911
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 118455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125429
length of database: 1,185,965,366
effective HSP length: 131
effective length of database: 733,473,288
effective search space used: 170899276104
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)