BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB20583.1| histidine kinase 1 [Zea mays] 1852 0.0
dbj|BAE80686.1| histidine kinase [Zea mays] 1725 0.0
ref|XP_467688.1| putative histidine kinase 1 [Oryza sativa ... 1533 0.0
ref|XP_469566.1| putative histidine kinase [Oryza sativa (j... 1118 0.0
dbj|BAE80688.1| histidine kinase [Zea mays] 1097 0.0
dbj|BAE80687.1| histidine kinase [Zea mays] 1096 0.0
dbj|BAE80689.1| histidine kinase [Zea mays] 1090 0.0
emb|CAF31355.1| putative histidine kinase [Cucurbita maxima] 1041 0.0
dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thali... 997 0.0
dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thali... 997 0.0
ref|NP_849925.1| WOL (CYTOKININ RESPONSE 1) [Arabidopsis th... 996 0.0
ref|NP_565277.1| WOL (CYTOKININ RESPONSE 1) [Arabidopsis th... 996 0.0
gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens] 914 0.0
ref|NP_564276.1| AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) [Ara... 912 0.0
gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens] 892 0.0
gb|AAM14700.1| cytokinin receptor [Catharanthus roseus] 884 0.0
dbj|BAD01585.1| histidine kinase 3 [Zea mays] 874 0.0
gb|AAF99730.1| F17L21.11 [Arabidopsis thaliana] 872 0.0
ref|NP_568532.1| AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) [Ara... 868 0.0
dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis ... 864 0.0
ref|XP_463649.1| putative histidine kinase [Oryza sativa (j... 849 0.0
gb|ABB76249.1| hybrid type histidine kinase [Oryza sativa (... 848 0.0
dbj|BAD01584.1| histidine kinase 2 [Zea mays] 824 0.0
dbj|BAD01586.1| histidine kinase 3 [Zea mays] 806 0.0
ref|NP_921024.1| putative histidine kinase [Oryza sativa (j... 796 0.0
dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa (... 775 0.0
gb|AAY32330.1| AHK1 [Phyllostachys praecox] 667 0.0
gb|AAP37766.1| At5g35750 [Arabidopsis thaliana] >gi|2731184... 565 e-159
gb|AAO59549.1| histidine kinase [Oryza sativa (indica culti... 405 e-111
gb|AAO59548.1| histidine kinase [Oryza sativa (indica culti... 397 e-108
gb|AAK13126.1| Histidine-kinase like protein [Oryza sativa ... 381 e-104
gb|AAS78641.1| putative cytokinin receptor [Oryza sativa] >... 303 4e-80
ref|ZP_00600877.1| PAS [Rubrobacter xylanophilus DSM 9941] ... 295 7e-78
ref|ZP_00601697.1| PAS [Rubrobacter xylanophilus DSM 9941] ... 277 2e-72
gb|AAQ18202.1| hypothetical protein csv012 [uncultured bact... 257 3e-66
ref|ZP_00674598.1| PAS [Trichodesmium erythraeum IMS101] >g... 247 2e-63
ref|ZP_00244380.1| COG0642: Signal transduction histidine k... 247 3e-63
ref|ZP_00105980.1| COG2202: FOG: PAS/PAC domain [Nostoc pun... 246 5e-63
ref|ZP_00659124.1| Response regulator receiver:ATP-binding ... 243 3e-62
ref|YP_463125.1| signal transduction histidine kinase [Synt... 233 3e-59
ref|ZP_00658601.1| PAS [Nocardioides sp. JS614] >gi|7115617... 232 9e-59
ref|NP_902168.1| probable hybrid sensory kinase [Chromobact... 229 5e-58
ref|NP_902313.1| probable sensor/response regulator hybrid ... 226 4e-57
ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222... 224 2e-56
dbj|BAC45924.1| two-component hybrid sensor and regulator [... 222 7e-56
dbj|BAC97498.1| sensory box sensor histidine kinase/respons... 221 2e-55
ref|ZP_00317632.1| COG2202: FOG: PAS/PAC domain [Microbulbi... 221 2e-55
ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B72... 219 5e-55
gb|AAZ44799.1| PAS [Dechloromonas aromatica RCB] >gi|719056... 219 6e-55
gb|AAO07892.1| FOG: CheY-like receiver [Vibrio vulnificus C... 219 6e-55
ref|ZP_01077297.1| Serine/Threonine protein kinase and Sign... 218 2e-54
ref|NP_716490.1| sensory box histidine kinase/response regu... 215 1e-53
ref|ZP_01109165.1| Response regulator receiver:ATP-binding ... 214 2e-53
dbj|BAE50645.1| hypothetical protein [Magnetospirillum magn... 214 3e-53
ref|ZP_01152331.1| Response regulator receiver:ATP-binding ... 213 3e-53
ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 ... 212 1e-52
gb|AAZ27751.1| sensory box histidine kinase/response regula... 211 1e-52
ref|ZP_00419367.1| PAS [Azotobacter vinelandii AvOP] >gi|67... 211 2e-52
ref|YP_470639.1| probable two-component sensor histidine ki... 211 2e-52
gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY... 210 4e-52
gb|AAZ44767.1| PAS [Dechloromonas aromatica RCB] >gi|719056... 207 2e-51
ref|ZP_00806419.1| Response regulator receiver:ATP-binding ... 204 2e-50
gb|EAN29681.1| PAS [Magnetococcus sp. MC-1] >gi|69256475|re... 201 2e-49
ref|ZP_00638792.1| PAS [Shewanella frigidimarina NCIMB 400]... 201 2e-49
gb|AAG57899.1| sensor-regulator, activates OmpR by phophory... 200 3e-49
gb|AAA20829.1| pectate lyase 200 3e-49
dbj|BAA16571.2| hybrid sensory histidine kinase, in two-com... 200 4e-49
ref|YP_409032.1| sensor-regulator [Shigella boydii Sb227] >... 200 4e-49
ref|ZP_00725643.1| COG0642: Signal transduction histidine k... 200 4e-49
ref|ZP_00728469.1| COG0642: Signal transduction histidine k... 199 5e-49
gb|AAZ44982.1| PAS [Dechloromonas aromatica RCB] >gi|719058... 199 5e-49
ref|ZP_00818428.1| Response regulator receiver:ATP-binding ... 199 9e-49
ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseoba... 199 9e-49
gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. ... 198 1e-48
ref|NP_743807.1| sensor histidine kinase/response regulator... 198 1e-48
gb|EAN26968.1| Response regulator receiver:ATP-binding regi... 198 1e-48
ref|ZP_00988878.1| putative histidine kinase [Vibrio splend... 198 1e-48
dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizob... 197 2e-48
ref|ZP_00826632.1| COG0642: Signal transduction histidine k... 197 2e-48
dbj|BAD37547.1| putative histidine kinase 1 [Oryza sativa (... 197 3e-48
emb|CAD78909.1| sensory transduction histidine kinase-putat... 196 4e-48
ref|ZP_00901477.1| Response regulator receiver:ATP-binding ... 195 9e-48
ref|ZP_00745934.1| COG0642: Signal transduction histidine k... 195 1e-47
ref|ZP_01063121.1| hypothetical two-component sensor [Vibri... 194 2e-47
pir||B41863 two-component regulatory protein lemA - Pseudom... 194 2e-47
ref|ZP_00775436.1| Response regulator receiver:ATP-binding ... 194 2e-47
sp|P48027|GACS_PSESY Sensor protein gacS >gi|151329|gb|AAA2... 194 2e-47
ref|YP_236768.1| Response regulator receiver:ATP-binding re... 194 2e-47
ref|ZP_00750537.1| COG0642: Signal transduction histidine k... 194 3e-47
ref|ZP_00753663.1| COG0642: Signal transduction histidine k... 193 4e-47
ref|ZP_00843997.1| Response regulator receiver:ATP-binding ... 193 4e-47
gb|AAZ34474.1| response regulator, sensor histidine kinase ... 192 6e-47
gb|EAN27174.1| PAS [Magnetococcus sp. MC-1] >gi|69261454|re... 192 8e-47
gb|EAN27618.1| Response regulator receiver:ATP-binding regi... 192 1e-46
ref|NP_791516.1| sensor histidine kinase/response regulator... 192 1e-46
ref|XP_478835.1| histidine kinase 1-like protein [Oryza sat... 191 2e-46
ref|ZP_00586405.1| Response regulator receiver:ATP-binding ... 190 3e-46
gb|EAN28061.1| Response regulator receiver:ATP-binding regi... 190 4e-46
gb|EAN29169.1| PAS [Magnetococcus sp. MC-1] >gi|69257114|re... 188 1e-45
gb|ABA03387.1| Signal transduction histidine kinase [Nitrob... 188 1e-45
dbj|BAE02741.1| two-component regulatory system sensor kina... 184 2e-44
gb|AAT41590.1| GacS [Pseudomonas fluorescens] 183 4e-44
gb|AAM18622.1| GacS-like sensor kinase protein [Acinetobact... 183 4e-44
emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobac... 183 5e-44
ref|XP_645937.1| histidine kinase [Dictyostelium discoideum... 182 8e-44
gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudo... 182 8e-44
dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii] 182 1e-43
gb|EAN70525.1| PAS [Shewanella denitrificans OS217] >gi|699... 182 1e-43
ref|ZP_00660379.1| Response regulator receiver:ATP-binding ... 181 2e-43
gb|AAK54094.2| histidine kinase DhkE [Dictyostelium discoid... 178 1e-42
emb|CAJ24348.1| two-component system sensor histidine kinas... 178 1e-42
ref|ZP_01128746.1| Response regulator receiver:ATP-binding ... 175 1e-41
emb|CAD24778.1| histidine kinase-like protein [Oryza sativa] 175 1e-41
gb|AAM37343.1| two-component system sensor protein [Xanthom... 174 2e-41
dbj|BAC88659.1| two-component hybrid sensor and regulator [... 173 5e-41
dbj|BAE69394.1| two-component system sensor protein [Xantho... 172 9e-41
ref|ZP_01132294.1| putative sensor protein [Pseudoalteromon... 172 9e-41
ref|YP_201436.1| two-component system sensor protein [Xanth... 172 9e-41
ref|ZP_00654688.1| Response regulator receiver:GAF:ATP-bind... 171 1e-40
gb|AAM41638.1| two-component system sensor protein [Xanthom... 171 2e-40
ref|ZP_00054895.2| COG0642: Signal transduction histidine k... 169 6e-40
dbj|BAE50121.1| Signal transduction histidine kinase [Magne... 168 1e-39
gb|AAP80772.1| MmoS [Methylococcus capsulatus] 168 2e-39
gb|AAU92711.1| sensory box histidine kinase/response regula... 168 2e-39
ref|ZP_00777187.1| Response regulator receiver:ATP-binding ... 167 3e-39
ref|ZP_00583064.1| PAS [Shewanella baltica OS155] >gi|68518... 167 3e-39
ref|ZP_00849255.1| PAS [Shewanella sp. ANA-3] >gi|78507803|... 166 5e-39
ref|ZP_00660842.1| PAS [Prosthecochloris vibrioformis DSM 2... 166 5e-39
ref|ZP_01090362.1| ammonium/methylammonium permease [Blasto... 166 6e-39
dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magne... 165 1e-38
ref|ZP_00474200.1| Response regulator receiver:ATP-binding ... 165 1e-38
ref|ZP_00882427.1| PAS [Shewanella sp. MR-4] >gi|82405138|g... 164 2e-38
ref|ZP_00773511.1| PAS [Pseudoalteromonas atlantica T6c] >g... 164 2e-38
ref|ZP_00054434.2| COG0784: FOG: CheY-like receiver [Magnet... 164 2e-38
ref|ZP_00853212.1| PAS [Shewanella sp. MR-7] >gi|78511925|g... 164 2e-38
ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoa... 163 4e-38
ref|YP_476763.1| sensory box histidine kinase/response regu... 163 5e-38
ref|ZP_00585950.1| PAS [Shewanella amazonensis SB2B] >gi|68... 162 7e-38
ref|YP_476201.1| sensory box histidine kinase/response regu... 162 9e-38
ref|ZP_00835661.1| PAS [Shewanella sp. PV-4] >gi|78362382|g... 162 1e-37
gb|AAR34048.1| sensory box histidine kinase/response regula... 161 2e-37
ref|ZP_00815187.1| PAS [Shewanella putrefaciens CN-32] >gi|... 161 2e-37
ref|ZP_00855004.1| PAS [Shewanella sp. MR-7] >gi|78510268|g... 161 2e-37
ref|ZP_00828155.1| COG2202: FOG: PAS/PAC domain [Yersinia f... 161 2e-37
ref|ZP_00527745.1| PAS [Chlorobium phaeobacteroides DSM 266... 160 3e-37
ref|ZP_00882182.1| PAS [Shewanella sp. MR-4] >gi|82405384|g... 160 4e-37
ref|ZP_00832341.1| COG2202: FOG: PAS/PAC domain [Yersinia i... 160 4e-37
ref|NP_901251.1| probable sensor/response hybrid [Chromobac... 159 6e-37
emb|CAG23023.1| hypothetical protein [Photobacterium profun... 159 7e-37
gb|EAN28637.1| PAS [Magnetococcus sp. MC-1] >gi|69258241|re... 159 1e-36
ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula... 158 1e-36
emb|CAI85186.1| putative sensor protein [Pseudoalteromonas ... 158 1e-36
ref|ZP_01091085.1| Response regulator receiver:ATP-binding ... 158 2e-36
dbj|BAE52539.1| Signal transduction histidine kinase [Magne... 158 2e-36
gb|AAG07499.1| probable sensor/response regulator hybrid [P... 158 2e-36
ref|ZP_00137562.2| COG2202: FOG: PAS/PAC domain [Pseudomona... 158 2e-36
ref|ZP_00973288.1| COG2202: FOG: PAS/PAC domain [Pseudomona... 158 2e-36
ref|ZP_00967483.1| COG2202: FOG: PAS/PAC domain [Pseudomona... 158 2e-36
dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PC... 157 4e-36
ref|ZP_00585281.1| PAS [Shewanella amazonensis SB2B] >gi|68... 157 4e-36
gb|AAK54091.2| histidine kinase DhkJ [Dictyostelium discoid... 157 4e-36
ref|XP_642053.1| histidine kinase [Dictyostelium discoideum... 157 4e-36
gb|AAZ45693.1| Response regulator receiver:ATP-binding regi... 157 4e-36
emb|CAC09578.1| histidine kinase receptor [Fagus sylvatica] 157 4e-36
ref|ZP_00849349.1| PAS [Shewanella sp. ANA-3] >gi|78507503|... 156 5e-36
gb|EAN29674.1| PAS [Magnetococcus sp. MC-1] >gi|69256468|re... 156 5e-36
gb|ABB38740.1| histidine kinase [Desulfovibrio desulfurican... 155 8e-36
ref|ZP_00108815.1| COG0642: Signal transduction histidine k... 155 8e-36
gb|ABC23161.1| Multi-sensor Hybrid Histidine Kinase [Rhodos... 155 8e-36
gb|EAN28230.1| Response regulator receiver:ATP-binding regi... 155 8e-36
ref|ZP_00836597.1| PAS [Shewanella sp. PV-4] >gi|78361632|g... 155 1e-35
ref|ZP_00988170.1| two-component system sensory/regulatory ... 155 1e-35
ref|ZP_00908274.1| Response regulator receiver:ATP-binding ... 155 1e-35
ref|ZP_01154229.1| PAS [Methanosaeta thermophila PT] >gi|88... 154 2e-35
gb|EAO24717.1| PAS [Syntrophomonas wolfei subsp. wolfei str... 153 4e-35
gb|AAK88075.1| AGR_C_4237p [Agrobacterium tumefaciens str. ... 153 4e-35
gb|EAN29352.1| PAS [Magnetococcus sp. MC-1] >gi|69256759|re... 153 4e-35
gb|AAZ48079.1| Response regulator receiver:ATP-binding regi... 153 4e-35
gb|AAL43321.1| two component sensor kinase/response regulat... 153 4e-35
ref|ZP_01152332.1| Response regulator receiver:ATP-binding ... 153 4e-35
gb|AAZ48415.1| Response regulator receiver:ATP-binding regi... 153 5e-35
gb|AAN49740.1| two-component hybrid sensor and regulator [L... 152 7e-35
ref|YP_001394.1| histidine kinase response regulator hybrid... 152 7e-35
dbj|BAE73783.1| two-component regulatory protein [Sodalis g... 152 7e-35
ref|NP_900552.1| probable sensor/response regulator hybrid ... 152 9e-35
ref|ZP_00591131.1| PAS [Prosthecochloris aestuarii DSM 271]... 152 1e-34
ref|NP_901291.1| probable sensor/response regulatory hybrid... 151 2e-34
ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitr... 151 2e-34
gb|AAK54089.2| histidine kinase DhkH [Dictyostelium discoid... 151 2e-34
ref|ZP_00512843.1| PAS [Chlorobium limicola DSM 245] >gi|67... 150 3e-34
ref|ZP_00911282.1| PAS [Clostridium beijerincki NCIMB 8052]... 150 3e-34
gb|AAR34661.1| sensory box sensor histidine kinase/response... 150 3e-34
ref|ZP_00550287.1| PAS [Desulfuromonas acetoxidans DSM 684]... 150 3e-34
ref|ZP_00676459.1| PAS [Pelobacter propionicus DSM 2379] >g... 150 3e-34
gb|ABA88306.1| Hpt domain protein [Pelobacter carbinolicus ... 150 3e-34
ref|ZP_00678575.1| Response regulator receiver:ATP-binding ... 150 5e-34
gb|ABA87031.1| putative histidine kinase [Vibrio cholerae] 150 5e-34
ref|ZP_01152049.1| PAS [Halorhodospira halophila SL1] >gi|8... 150 5e-34
ref|ZP_00760913.1| COG0642: Signal transduction histidine k... 149 6e-34
gb|AAL59700.1| putative histidine kinase [Vibrio cholerae] 149 6e-34
ref|ZP_00528277.1| PAS [Chlorobium phaeobacteroides DSM 266... 149 6e-34
ref|YP_432114.1| FOG: PAS/PAC domain [Hahella chejuensis KC... 149 6e-34
dbj|BAE64646.1| unnamed protein product [Aspergillus oryzae] 149 6e-34
ref|ZP_00586343.1| PAS [Shewanella amazonensis SB2B] >gi|68... 148 1e-33
ref|ZP_00639374.1| PAS [Shewanella frigidimarina NCIMB 400]... 148 1e-33
ref|ZP_01023574.1| Response regulator receiver:ATP-binding ... 148 1e-33
ref|XP_387294.1| hypothetical protein FG07118.1 [Gibberella... 148 1e-33
ref|ZP_00520847.1| Response regulator receiver:ATP-binding ... 148 2e-33
ref|ZP_00317250.1| COG0642: Signal transduction histidine k... 148 2e-33
ref|ZP_00850586.1| Response regulator receiver:ATP-binding ... 148 2e-33
ref|ZP_00316318.1| COG0642: Signal transduction histidine k... 147 2e-33
gb|AAZ47484.1| PAS [Dechloromonas aromatica RCB] >gi|719083... 147 2e-33
gb|AAO09997.1| Signal transduction histidine kinase [Vibrio... 147 2e-33
dbj|BAC95587.1| signal transduction histidine kinase [Vibri... 147 2e-33
ref|NP_900860.1| probable sensor/response regulator hybrid ... 147 3e-33
gb|AAD09491.1| histidine kinase FIK [Fusarium solani f. sp.... 147 3e-33
gb|AAD40816.1| histidine kinase [Fusarium solani f. sp. pisi] 147 3e-33
ref|ZP_00640879.1| Response regulator receiver:ATP-binding ... 147 4e-33
emb|CAE25761.1| sensor histidine kinase with a response reg... 147 4e-33
ref|ZP_00764744.1| COG0642: Signal transduction histidine k... 147 4e-33
gb|AAO07053.1| FOG: CheY-like receiver [Vibrio vulnificus C... 147 4e-33
dbj|BAC08834.1| two-component hybrid sensor and regulator [... 147 4e-33
gb|AAW86577.1| sensor protein BarA [Vibrio fischeri ES114] ... 146 5e-33
ref|ZP_00835021.1| COG0642: Signal transduction histidine k... 146 5e-33
gb|EAN71793.1| PAS [Shewanella denitrificans OS217] >gi|699... 146 5e-33
gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [... 146 7e-33
gb|AAG04317.1| sensor/response regulator hybrid [Pseudomona... 146 7e-33
gb|EAN27061.1| PAS [Magnetococcus sp. MC-1] >gi|69261710|re... 146 7e-33
dbj|BAC96610.1| conserved hypothetical protein [Vibrio vuln... 146 7e-33
gb|AAZ44999.1| Response regulator receiver:ATP-binding regi... 146 7e-33
ref|ZP_00687387.1| Response regulator receiver:ATP-binding ... 145 9e-33
dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemo... 145 9e-33
ref|ZP_00991371.1| sensor histidine kinase/response regulat... 145 9e-33
ref|ZP_00761785.1| COG0642: Signal transduction histidine k... 145 9e-33
dbj|BAE50760.1| Signal transduction histidine kinase [Magne... 145 1e-32
gb|AAZ48868.1| PAS [Dechloromonas aromatica RCB] >gi|719097... 145 1e-32
ref|ZP_00055971.1| COG0642: Signal transduction histidine k... 145 1e-32
ref|ZP_01064678.1| sensor histidine kinase/response regulat... 145 1e-32
ref|ZP_00831566.1| COG0642: Signal transduction histidine k... 145 1e-32
emb|CAI85820.1| sensor protein barA [Pseudoalteromonas halo... 145 1e-32
ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas t... 145 1e-32
gb|AAL11449.1| putative global response regulation sensor k... 145 1e-32
gb|AAM05416.1| sensory transduction histidine kinase [Metha... 145 1e-32
ref|ZP_00676854.1| PAS [Pelobacter propionicus DSM 2379] >g... 144 2e-32
dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae] 144 2e-32
dbj|BAC60830.1| sensor histidine kinase/response regulator ... 144 2e-32
ref|ZP_00659515.1| PAS [Nocardioides sp. JS614] >gi|7115521... 144 2e-32
ref|ZP_00317631.1| COG0642: Signal transduction histidine k... 144 3e-32
dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PC... 144 3e-32
gb|EAN29419.1| PAS [Magnetococcus sp. MC-1] >gi|69256826|re... 144 3e-32
gb|EAN28289.1| Response regulator receiver:ATP-binding regi... 144 3e-32
gb|EAN29210.1| Response regulator receiver:ATP-binding regi... 144 3e-32
ref|ZP_01161524.1| putative sensor histidine kinase/respons... 143 4e-32
ref|ZP_00758621.1| COG0642: Signal transduction histidine k... 143 4e-32
ref|ZP_00757152.1| COG0642: Signal transduction histidine k... 143 4e-32
ref|ZP_00748429.1| COG0642: Signal transduction histidine k... 143 4e-32
ref|ZP_00763227.1| COG0642: Signal transduction histidine k... 143 4e-32
gb|AAF95595.1| sensor histidine kinase/response regulator [... 143 4e-32
ref|ZP_00775653.1| PAS [Pseudoalteromonas atlantica T6c] >g... 143 4e-32
ref|ZP_00751676.1| COG0642: Signal transduction histidine k... 143 4e-32
dbj|BAB74574.1| two-component hybrid sensor and regulator [... 143 6e-32
gb|ABA20653.1| Multi-sensor Hybrid Histidine Kinase [Anabae... 143 6e-32
ref|ZP_01036979.1| sensor histidine kinase/response regulat... 143 6e-32
emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum ... 143 6e-32
gb|ABA57772.1| Hybrid signal transduction histidine kinase ... 143 6e-32
ref|ZP_01148339.1| PAS [Desulfotomaculum reducens MI-1] >gi... 142 7e-32
ref|ZP_01019711.1| Response regulator receiver:ATP-binding ... 142 7e-32
ref|ZP_00622022.1| Response regulator receiver:ATP-binding ... 142 7e-32
dbj|BAE52950.1| Signal transduction histidine kinase [Magne... 142 7e-32
ref|ZP_01015651.1| sensor histidine kinase/response regulat... 142 7e-32
emb|CAG21400.1| putative sensor histidine kinase/response r... 142 7e-32
gb|AAK22708.1| sensor histidine kinase / response regulator... 142 7e-32
dbj|BAC61352.1| putative two-component sensor [Vibrio parah... 142 9e-32
ref|ZP_01113337.1| PAS [Reinekea sp. MED297] >gi|88779426|g... 142 9e-32
ref|NP_719532.1| sensory transduction histidine kinase [She... 142 9e-32
ref|YP_475076.1| sensory box histidine kinase/response regu... 142 1e-31
dbj|BAC08428.1| two-component hybrid sensor and regulator [... 142 1e-31
gb|AAQ19476.1| histidine kinase J7 [Emericella nidulans] 141 2e-31
emb|CAG76469.1| two-component sensor kinase and response re... 141 2e-31
ref|YP_432128.1| Signal transduction histidine kinase [Hahe... 141 2e-31
ref|XP_662083.1| hypothetical protein AN4479.2 [Aspergillus... 141 2e-31
ref|ZP_00054637.2| COG0642: Signal transduction histidine k... 141 2e-31
ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1] >gi... 141 2e-31
ref|YP_484035.1| periplasmic sensor hybrid histidine kinase... 141 2e-31
gb|AAB53936.1| sensor/regulator protein RpfA 141 2e-31
ref|ZP_00587277.1| PAS [Shewanella amazonensis SB2B] >gi|68... 140 3e-31
dbj|BAE51097.1| Signal transduction histidine kinase [Magne... 140 3e-31
gb|AAK72489.1| GacS [Pseudomonas chlororaphis] 140 3e-31
ref|YP_392932.1| histidine kinase [Thiomicrospira denitrifi... 140 3e-31
ref|ZP_01152221.1| Response regulator receiver:ATP-binding ... 140 3e-31
emb|CAD06072.1| sensor protein [Salmonella enterica subsp. ... 140 4e-31
emb|CAI89330.1| putative two-component hybrid sensor and re... 140 5e-31
ref|ZP_00136834.1| COG0642: Signal transduction histidine k... 140 5e-31
dbj|BAC87974.1| two-component hybrid sensor and regulator [... 140 5e-31
ref|ZP_01061081.1| PAS domain protein [Flavobacterium sp. M... 140 5e-31
ref|ZP_00815127.1| PAS [Shewanella putrefaciens CN-32] >gi|... 140 5e-31
gb|EAN29841.1| PAS [Magnetococcus sp. MC-1] >gi|69256205|re... 140 5e-31
ref|ZP_00621624.1| Response regulator receiver:ATP-binding ... 139 6e-31
ref|YP_217885.1| sensory histidine kinase [Salmonella enter... 139 6e-31
gb|AAL21838.1| sensory histidine kinase [Salmonella typhimu... 139 6e-31
gb|AAV78673.1| sensor protein [Salmonella enterica subsp. e... 139 6e-31
ref|ZP_00590975.1| PAS [Prosthecochloris aestuarii DSM 271]... 139 6e-31
gb|AAW87430.1| sensory transduction protein kinase [Vibrio ... 139 6e-31
gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Pelo... 139 6e-31
gb|AAZ63425.1| PAS [Ralstonia eutropha JMP134] >gi|73537902... 139 8e-31
ref|ZP_00814520.1| Response regulator receiver:ATP-binding ... 139 8e-31
ref|ZP_00903461.1| Response regulator receiver:ATP-binding ... 139 8e-31
ref|YP_432178.1| Signal transduction histidine kinase [Hahe... 139 8e-31
gb|AAR35690.1| sensory box histidine kinase/response regula... 139 8e-31
dbj|BAE49914.1| Signal transduction histidine kinase [Magne... 139 1e-30
ref|YP_434811.1| Signal transduction histidine kinase [Hahe... 139 1e-30
ref|NP_719006.1| sensor histidine kinase/response regulator... 138 1e-30
ref|YP_477864.1| sensory box histidine kinase/response regu... 138 1e-30
ref|ZP_00530893.1| PAS [Chlorobium phaeobacteroides BS1] >g... 138 1e-30
ref|ZP_00836035.1| Response regulator receiver:ATP-binding ... 138 1e-30
emb|CAE80630.1| sensor histidine kinase/response regulator ... 138 1e-30
gb|AAW88086.1| sensory transduction protein kinase [Vibrio ... 138 1e-30
gb|AAM76053.1| two-component sensor kinase [Pseudomonas chl... 138 2e-30
gb|ABD46754.1| two-component histidine kinase [Pseudomonas ... 138 2e-30
gb|ABA75959.1| Multi-sensor Hybrid Histidine Kinase [Pseudo... 138 2e-30
gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens... 137 2e-30
sp|Q9P4U6|TCSB_EMENI Two-component system protein B precurs... 137 2e-30
ref|XP_659404.1| hypothetical protein AN1800.2 [Aspergillus... 137 2e-30
ref|ZP_00621354.1| Response regulator receiver:ATP-binding ... 137 3e-30
gb|AAA87840.1| putative sensor kinase; regulatory protein f... 137 3e-30
gb|EAN27242.1| PAS [Magnetococcus sp. MC-1] >gi|69261185|re... 137 3e-30
gb|AAU27982.1| sensory box histidine kinase/response regula... 137 3e-30
emb|CAH13039.1| Legionella transmission sensor LetS [Legion... 137 3e-30
ref|ZP_00989210.1| hypothetical two-component sensor [Vibri... 137 4e-30
ref|ZP_00858773.1| PAS [Bradyrhizobium sp. BTAi1] >gi|78517... 137 4e-30
dbj|BAB75460.1| two-component hybrid sensor and regulator [... 137 4e-30
gb|EAN28159.1| PAS [Magnetococcus sp. MC-1] >gi|69259263|re... 137 4e-30
ref|ZP_01016326.1| Hybrid sensory histidine kinase [Parvula... 137 4e-30
ref|ZP_00820883.1| COG0642: Signal transduction histidine k... 137 4e-30
ref|ZP_00581337.1| PAS [Shewanella baltica OS155] >gi|68520... 136 5e-30
gb|ABA72355.1| Periplasmic Sensor Hybrid Histidine Kinase [... 136 5e-30
dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizob... 136 5e-30
ref|ZP_01056317.1| sensory box sensor histidine kinase/resp... 136 7e-30
ref|YP_433070.1| Signal transduction histidine kinase [Hahe... 136 7e-30
ref|ZP_00516150.1| Response regulator receiver:ATP-binding ... 136 7e-30
dbj|BAB73978.1| two-component hybrid sensor and regulator [... 136 7e-30
gb|AAZ47621.1| Response regulator receiver:ATP-binding regi... 136 7e-30
gb|AAG06850.1| probable sensor/response regulator hybrid [P... 135 9e-30
gb|AAM42120.1| histidine kinase/response regulator hybrid p... 135 9e-30
gb|AAM52311.1| sensor kinase; GacS [Pseudomonas chlororaphis] 135 9e-30
ref|ZP_00511975.1| PAS [Chlorobium limicola DSM 245] >gi|67... 135 9e-30
gb|EAN29672.1| Response regulator receiver:ATP-binding regi... 135 9e-30
gb|AAY96071.1| sensor histidine kinase/response regulator [... 135 9e-30
ref|ZP_00053728.2| COG0642: Signal transduction histidine k... 135 1e-29
ref|ZP_00973790.1| COG0642: Signal transduction histidine k... 135 1e-29
ref|ZP_00968099.1| COG0642: Signal transduction histidine k... 135 1e-29
emb|CAH19990.1| bifunctional multimodular BarA: sensory his... 135 2e-29
gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [... 135 2e-29
ref|ZP_00916990.1| Response regulator receiver:ATP-binding ... 135 2e-29
gb|AAM84395.1| sensor-regulator, activates OmpR by phophory... 135 2e-29
ref|ZP_00796947.1| COG0642: Signal transduction histidine k... 135 2e-29
gb|AAS60579.1| two-component regulatory protein [Yersinia p... 135 2e-29
emb|CAC92611.1| two-component regulatory protein [Yersinia ... 135 2e-29
ref|ZP_00794314.1| COG0642: Signal transduction histidine k... 135 2e-29
emb|CAA65047.1| putative sensor kinase [Synechocystis sp.] 135 2e-29
ref|ZP_00914078.1| Response regulator receiver:ATP-binding ... 135 2e-29
ref|ZP_00054204.1| COG0642: Signal transduction histidine k... 135 2e-29
gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha] 134 2e-29
ref|ZP_00317496.1| COG0642: Signal transduction histidine k... 134 2e-29
ref|ZP_00837289.1| PAS [Shewanella sp. PV-4] >gi|78360957|g... 134 2e-29
ref|ZP_00695008.1| PAS [Rhodoferax ferrireducens DSM 15236]... 134 2e-29
gb|ABA21187.1| Multi-sensor Hybrid Histidine Kinase [Anabae... 134 2e-29
emb|CAH16115.1| Legionella transmission sensor LetS [Legion... 134 2e-29
gb|EAN71287.1| Response regulator receiver:ATP-binding regi... 134 2e-29
ref|NP_794602.1| sensor histidine kinase/response regulator... 134 3e-29
gb|AAF04854.1| histidine protein kinase homolog GacS [Azoto... 134 3e-29
ref|ZP_00419673.1| Response regulator receiver:ATP-binding ... 134 3e-29
ref|ZP_01133429.1| probable sensor/response regulator hybri... 134 3e-29
gb|AAG08241.1| probable sensor/response regulator hybrid [P... 133 4e-29
ref|ZP_00347591.1| COG0642: Signal transduction histidine k... 133 4e-29
ref|ZP_00971552.1| COG0642: Signal transduction histidine k... 133 4e-29
gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171] 133 4e-29
ref|ZP_00965940.1| COG0642: Signal transduction histidine k... 133 4e-29
dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PC... 133 4e-29
gb|AAZ36841.1| sensor histidine kinase/response regulator [... 133 4e-29
ref|YP_438343.1| two-component system sensor protein [Burkh... 133 4e-29
ref|ZP_00954322.1| sensor histidine kinase/response regulat... 133 6e-29
ref|ZP_00849114.1| PAS [Shewanella sp. ANA-3] >gi|78508081|... 133 6e-29
ref|ZP_01127605.1| sensor histidine kinase/response regulat... 133 6e-29
gb|AAA82924.1| regulator of multiple functions 133 6e-29
ref|ZP_00753746.1| COG0642: Signal transduction histidine k... 133 6e-29
dbj|BAE49245.1| Signal transduction histidine kinase [Magne... 132 8e-29
ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber ... 132 8e-29
ref|ZP_00853304.1| PAS [Shewanella sp. MR-7] >gi|78512017|g... 132 8e-29
ref|ZP_00880979.1| PAS [Shewanella sp. MR-4] >gi|82406587|g... 132 8e-29
dbj|BAE61925.1| unnamed protein product [Aspergillus oryzae] 132 8e-29
gb|EAN29402.1| PAS [Magnetococcus sp. MC-1] >gi|69256809|re... 132 8e-29
ref|NP_901883.1| probable sensor histidine kinase/response ... 132 8e-29
ref|YP_315026.1| Multi-sensor Hybrid Histidine Kinase [Thio... 132 8e-29
dbj|BAC78679.1| two-component histidine kinase [Cochliobolu... 132 1e-28
dbj|BAC78684.1| two-component histidine kinase [Cochliobolu... 132 1e-28
dbj|BAC78683.1| two-component histidine kinase [Cochliobolu... 132 1e-28
dbj|BAC78682.1| two-component histidine kinase [Cochliobolu... 132 1e-28
dbj|BAC78681.1| two-component histidine kinase [Cochliobolu... 132 1e-28
dbj|BAC78680.1| two-component histidine kinase [Cochliobolu... 132 1e-28
ref|ZP_01055607.1| sensor histidine kinase/response regulat... 132 1e-28
emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Woli... 132 1e-28
gb|AAY92257.1| sensory box sensor histidine kinase/response... 132 1e-28
ref|NP_746929.1| sensor histidine kinase/response regulator... 132 1e-28
ref|ZP_00902080.1| Response regulator receiver:ATP-binding ... 132 1e-28
ref|ZP_00856275.1| Response regulator receiver:ATP-binding ... 132 1e-28
dbj|BAC78687.1| two-component histidine kinase [Cochliobolu... 132 1e-28
gb|AAK25064.1| sensor histidine kinase/response regulator [... 132 1e-28
gb|AAZ48278.1| PAS [Dechloromonas aromatica RCB] >gi|719091... 132 1e-28
gb|AAV93460.1| sensor histidine kinase/response regulator [... 132 1e-28
ref|ZP_00750257.1| COG0642: Signal transduction histidine k... 132 1e-28
gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biov... 131 2e-28
ref|ZP_00760976.1| COG0642: Signal transduction histidine k... 131 2e-28
ref|ZP_00754957.1| COG0642: Signal transduction histidine k... 131 2e-28
ref|YP_314745.1| Multi-sensor Hybrid Histidine Kinase [Thio... 131 2e-28
ref|ZP_00845884.1| PAS [Rhodopseudomonas palustris BisB18] ... 131 2e-28
ref|ZP_00418430.1| Response regulator receiver:ATP-binding ... 131 2e-28
ref|ZP_01045062.1| Signal transduction histidine kinase [Ni... 131 2e-28
ref|NP_716212.1| sensory box histidine kinase/response regu... 131 2e-28
gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dech... 131 2e-28
gb|AAR29899.1| putative histidine kinase NIK1p [Cochliobolu... 131 2e-28
ref|ZP_00883055.1| Response regulator receiver:ATP-binding ... 131 2e-28
ref|YP_237476.1| Response regulator receiver:ATP-binding re... 131 2e-28
ref|ZP_00948867.1| sensor histidine kinase/response regulat... 130 3e-28
ref|ZP_01114990.1| hypothetical tryptophan-rich sensor prot... 130 3e-28
gb|AAO08079.1| Signal transduction histidine kinase [Vibrio... 130 3e-28
ref|ZP_01109674.1| sensory box histidine kinase/response re... 130 3e-28
emb|CAI86226.1| putative two-component member protein [Pseu... 130 3e-28
dbj|BAC96034.1| signal transduction histidine kinase [Vibri... 130 3e-28
gb|AAL30826.1| two-component osmosensing histidine kinase B... 130 4e-28
gb|AAL37947.1| two-component osmosensing histidine-kinase [... 130 4e-28
ref|ZP_00907239.1| Response regulator receiver:ATP-binding ... 130 4e-28
ref|YP_434863.1| Signal transduction histidine kinase [Hahe... 130 4e-28
gb|AAM39799.1| two-component system sensor protein [Xanthom... 130 5e-28
ref|ZP_01034764.1| two-component hybrid sensor and regulato... 130 5e-28
ref|ZP_00495581.1| COG0642: Signal transduction histidine k... 130 5e-28
ref|ZP_00498887.1| COG0642: Signal transduction histidine k... 130 5e-28
ref|ZP_00489062.1| COG0642: Signal transduction histidine k... 130 5e-28
ref|ZP_00468639.1| COG0642: Signal transduction histidine k... 130 5e-28
ref|ZP_00896911.1| COG0642: Signal transduction histidine k... 130 5e-28
gb|ABA51930.1| two-component system sensor protein [Burkhol... 130 5e-28
ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [... 130 5e-28
emb|CAH37562.1| putative histidine kinase/response regulato... 130 5e-28
ref|ZP_00851927.1| PAS [Shewanella sp. ANA-3] >gi|78505098|... 129 6e-28
gb|EAN27799.1| PAS [Magnetococcus sp. MC-1] >gi|69259932|re... 129 6e-28
ref|ZP_00621033.1| PAS [Silicibacter sp. TM1040] >gi|691341... 129 6e-28
ref|ZP_00978453.1| COG0642: Signal transduction histidine k... 129 6e-28
emb|CAD78827.1| sensory transduction histidine kinase-possi... 129 6e-28
gb|EAN27960.1| PAS [Magnetococcus sp. MC-1] >gi|69259624|re... 129 6e-28
ref|ZP_00676542.1| PAS [Pelobacter propionicus DSM 2379] >g... 129 6e-28
ref|ZP_00108373.2| COG0642: Signal transduction histidine k... 129 8e-28
ref|ZP_00583833.1| Response regulator receiver:ATP-binding ... 129 8e-28
ref|ZP_00627039.1| PAS [Nitrobacter hamburgensis X14] >gi|6... 129 8e-28
ref|ZP_00808230.1| PAS [Rhodopseudomonas palustris BisA53] ... 129 8e-28
gb|AAZ48812.1| Response regulator receiver:ATP-binding regi... 129 1e-27
ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitr... 128 1e-27
ref|YP_431646.1| Signal transduction histidine kinase [Hahe... 128 1e-27
gb|AAS94932.1| sensor/response regulator [Desulfovibrio vul... 128 1e-27
gb|ABB39723.1| histidine kinase [Desulfovibrio desulfurican... 128 1e-27
dbj|BAE67237.1| two-component system sensor protein [Xantho... 128 2e-27
dbj|BAB50157.1| two-component sensor/response regulator hyb... 128 2e-27
ref|ZP_00763921.1| COG0642: Signal transduction histidine k... 128 2e-27
emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella... 128 2e-27
ref|ZP_00665369.1| PAS [Syntrophobacter fumaroxidans MPOB] ... 128 2e-27
ref|ZP_00559093.1| PAS [Desulfitobacterium hafniense DCB-2]... 128 2e-27
gb|AAZ24849.1| sensor histidine kinase/response regulator [... 127 2e-27
gb|AAM35383.1| two-component system sensor protein [Xanthom... 127 2e-27
emb|CAJ22159.1| two-component system sensor protein [Xantho... 127 2e-27
emb|CAE81140.1| hypothetical protein [Bdellovibrio bacterio... 127 2e-27
gb|ABA89190.1| sensor/response regulator hybrid [Pelobacter... 127 2e-27
gb|AAO11010.1| Signal transduction histidine kinase [Vibrio... 127 2e-27
dbj|BAC94392.1| signal transduction histidine kinase [Vibri... 127 2e-27
gb|EAN29348.1| PAS [Magnetococcus sp. MC-1] >gi|69256755|re... 127 3e-27
ref|ZP_01167687.1| Multi-sensor Hybrid Histidine Kinase [Oc... 127 3e-27
gb|ABA74778.1| Histidine Kinase [Pseudomonas fluorescens Pf... 127 3e-27
gb|AAM37876.1| histidine kinase-response regulator hybrid p... 127 3e-27
ref|YP_200466.1| histidine kinase-response regulator hybrid... 127 3e-27
dbj|BAE68480.1| histidine kinase-response regulator hybrid ... 127 3e-27
ref|ZP_00910308.1| ATP-binding region, ATPase-like:Histidin... 127 4e-27
ref|ZP_00416780.1| Response regulator receiver:ATP-binding ... 127 4e-27
ref|YP_316429.1| Periplasmic Sensor Hybrid Histidine Kinase... 126 5e-27
gb|EAN27046.1| Response regulator receiver:ATP-binding regi... 126 5e-27
ref|XP_640889.1| histidine kinase [Dictyostelium discoideum... 126 5e-27
dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticu... 126 5e-27
emb|CAJ24899.1| two-component system sensor histidine kinas... 126 5e-27
ref|ZP_00763584.1| COG0642: Signal transduction histidine k... 126 5e-27
ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501] >gi|... 126 7e-27
ref|ZP_00505065.1| PAS [Clostridium thermocellum ATCC 27405... 126 7e-27
ref|ZP_00678023.1| PAS [Pelobacter propionicus DSM 2379] >g... 126 7e-27
gb|EAN27823.1| PAS [Magnetococcus sp. MC-1] >gi|69259865|re... 125 9e-27
ref|ZP_01016459.1| Signal transduction histidine kinase [Pa... 125 9e-27
ref|ZP_00422440.1| Response regulator receiver:ATP-binding ... 125 1e-26
ref|ZP_00858165.1| PAS [Bradyrhizobium sp. BTAi1] >gi|78519... 125 1e-26
ref|ZP_00807318.1| PAS [Rhodopseudomonas palustris BisA53] ... 125 1e-26
emb|CAG19643.1| Hypothetical sensor protein TorS [Photobact... 125 1e-26
gb|AAW88095.1| transcriptional regulator [Vibrio fischeri E... 125 1e-26
gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thio... 125 1e-26
gb|EAN07403.1| PAS [Mesorhizobium sp. BNC1] >gi|69275704|re... 125 1e-26
gb|AAY93185.1| sensor histidine kinase/response regulator [... 125 1e-26
ref|ZP_01091217.1| sensory box sensor histidine kinase/resp... 125 1e-26
>dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 1852 bits (4797), Expect = 0.0
Identities = 944/974 (96%), Positives = 945/974 (97%)
Frame = -2
Query: 3254 MGGKYRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML 3075
MGGKYRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML
Sbjct: 1 MGGKYRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML 60
Query: 3074 QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH 2895
QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH
Sbjct: 61 QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH 120
Query: 2894 HEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRAR 2715
HEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRAR
Sbjct: 121 HEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRAR 180
Query: 2714 TTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVE 2535
TTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVE
Sbjct: 181 TTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVE 240
Query: 2534 NLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCR 2355
NLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCR
Sbjct: 241 NLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCR 300
Query: 2354 YRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAK 2175
YRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAK
Sbjct: 301 YRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAK 360
Query: 2174 SQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAK 1995
SQFLATASHEIRTPMNGV TQKDYAQTAQMCGRALITLINDVLDRAK
Sbjct: 361 SQFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAK 420
Query: 1994 IEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQIL 1815
IEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQIL
Sbjct: 421 IEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQIL 480
Query: 1814 TNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFE 1635
TNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFE
Sbjct: 481 TNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFE 540
Query: 1634 AADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVF 1455
AADRRNSWQYF E ENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVF
Sbjct: 541 AADRRNSWQYFKLLLSDKESLLDDLESENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVF 600
Query: 1454 TPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDI 1275
TPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHS+KDI
Sbjct: 601 TPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSHKDI 660
Query: 1274 SGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPG 1095
SGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPG
Sbjct: 661 SGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPG 720
Query: 1094 QNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKY 915
QNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKY
Sbjct: 721 QNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKY 780
Query: 914 GSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVN 735
GSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVN
Sbjct: 781 GSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVN 840
Query: 734 LRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMEL 555
LRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMEL
Sbjct: 841 LRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMEL 900
Query: 554 KANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ 375
KANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ
Sbjct: 901 KANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ 960
Query: 374 AVSRLVVGTTDSAV 333
AVSRLVVGTTDSAV
Sbjct: 961 AVSRLVVGTTDSAV 974
>dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 1725 bits (4468), Expect = 0.0
Identities = 878/973 (90%), Positives = 904/973 (92%)
Frame = -2
Query: 3251 GGKYRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQ 3072
G KY AA TKR WRGLAAA WVL AV CSAVMHWT+RR+SMDRAEERLVSMCEERARMLQ
Sbjct: 3 GNKYCAAMTKRRWRGLAAAAWVLVAVACSAVMHWTMRRESMDRAEERLVSMCEERARMLQ 62
Query: 3071 EQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHH 2892
EQFGVTVNHVHAIAILI+TFN++KSP AIDQDTFAKYTARTSFERPLLNGVA+AQRVFHH
Sbjct: 63 EQFGVTVNHVHAIAILIATFNYDKSPSAIDQDTFAKYTARTSFERPLLNGVAYAQRVFHH 122
Query: 2891 EREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRART 2712
EREMFESQQGW+MNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENI RART
Sbjct: 123 EREMFESQQGWIMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILRART 182
Query: 2711 TGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVEN 2532
TGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVEN
Sbjct: 183 TGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVEN 242
Query: 2531 LLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRY 2352
LLSKLAGNQDIVVNVYDVTNAS+AMVLYGPSS DE+VPFLHVSMLDFGDPFR+HEMRCRY
Sbjct: 243 LLSKLAGNQDIVVNVYDVTNASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMRCRY 302
Query: 2351 RQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS 2172
RQKLPM WSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS
Sbjct: 303 RQKLPMQWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS 362
Query: 2171 QFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKI 1992
QFLAT SHEIRTPMNGV TQKDYAQTAQMCGRALITLINDVLDRAKI
Sbjct: 363 QFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKI 422
Query: 1991 EAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILT 1812
EAGKLELEAVPFDLRSLMDDV+SLFSSKSREKCIELAVFVCDNVPK V+GDPWRFRQILT
Sbjct: 423 EAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQILT 482
Query: 1811 NLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEA 1632
NLVGNAVKFTERGHVFVRVCLA+NSNMEA QVL+GAMNGK GRV+ST NGAFNTLSGFEA
Sbjct: 483 NLVGNAVKFTERGHVFVRVCLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEA 542
Query: 1631 ADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFT 1452
ADRRNSWQYF EG NS+QSDSD VTLAISIEDTGVGIPLQAQDRVFT
Sbjct: 543 ADRRNSWQYFKMLLSDKESLLDDLEGTNSDQSDSDHVTLAISIEDTGVGIPLQAQDRVFT 602
Query: 1451 PFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDIS 1272
PFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF S P VGSTFTFS TLK SYKDIS
Sbjct: 603 PFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLKRSYKDIS 662
Query: 1271 GDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQ 1092
DSSRSL+EALPTAFKGMKAIL+DGRPVRSAVTRYHLKRLGI +Q VNNM+AVVKAFPGQ
Sbjct: 663 VDSSRSLSEALPTAFKGMKAILIDGRPVRSAVTRYHLKRLGITVQAVNNMSAVVKAFPGQ 722
Query: 1091 NGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG 912
NGA SREKA+ILFIESDFWRPETDVQLLNHLRE KN QLSDGHKVVLLVTSEADKDKYG
Sbjct: 723 NGATVSREKATILFIESDFWRPETDVQLLNHLREHKNRQLSDGHKVVLLVTSEADKDKYG 782
Query: 911 SIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNL 732
SIFDIVMCKPIRAS IASSIQQLLKVE+ ER+DNQNRPSFLRSLLVGKNILVVDDNKVNL
Sbjct: 783 SIFDIVMCKPIRASMIASSIQQLLKVEMPERRDNQNRPSFLRSLLVGKNILVVDDNKVNL 842
Query: 731 RVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELK 552
RVAAAALKKYGANVSCVESGKDAISLLQPPH FDACFMDVQMPEMDGFEAT QIRQ E++
Sbjct: 843 RVAAAALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQMPEMDGFEATRQIRQTEMR 902
Query: 551 ANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQA 372
NEERKNKL IEGST EYHLPVLAMTADVIQATYE+CIKSGMDGYVSKPFDEEQLYQA
Sbjct: 903 VNEERKNKLVLIEGSTFVEYHLPVLAMTADVIQATYEKCIKSGMDGYVSKPFDEEQLYQA 962
Query: 371 VSRLVVGTTDSAV 333
VSRLVVGTTDS V
Sbjct: 963 VSRLVVGTTDSTV 975
>ref|XP_467688.1| putative histidine kinase 1 [Oryza sativa (japonica cultivar-group)]
dbj|BAD16039.1| putative histidine kinase 1 [Oryza sativa (japonica cultivar-group)]
Length = 984
Score = 1533 bits (3969), Expect = 0.0
Identities = 793/976 (81%), Positives = 845/976 (86%), Gaps = 15/976 (1%)
Frame = -2
Query: 3215 WRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHA 3036
WR AAA WVL AV C+A MHW LRR++MDRAEERLVSMCEERARMLQEQFGVTVNHVHA
Sbjct: 10 WRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQFGVTVNHVHA 69
Query: 3035 IAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWV 2856
+AILISTF+FEK P AIDQDTFAKYTARTSFERPLLNGVA+AQR+FHHEREMFE+QQGW+
Sbjct: 70 LAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHEREMFENQQGWI 129
Query: 2855 MNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRL 2676
M TM+R+ APPQ EYAPVIFSQDTVSYLARIDMMSGEEDRENI RAR TGKAVLTNPFRL
Sbjct: 130 MKTMKRQAAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDRENILRARATGKAVLTNPFRL 189
Query: 2675 LGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIV 2496
LGSNHLGVVLTFAVYRP L ADASVE+RVEAT GYLGGAFDVESLVENLLSKLAGNQDIV
Sbjct: 190 LGSNHLGVVLTFAVYRPGLAADASVEERVEATAGYLGGAFDVESLVENLLSKLAGNQDIV 249
Query: 2495 VNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRC--RYRQKLPMPWSA 2322
VNVYDVTNAS+ M +YGP S D +V HVS LDFGDPFR HEMRC RYRQK P+PWSA
Sbjct: 250 VNVYDVTNASEPMAMYGPQSPDGKVSLFHVSTLDFGDPFRAHEMRCRSRYRQKPPLPWSA 309
Query: 2321 ITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEI 2142
ITNPLGTFVIWML+GY I AA+SRYDKV+EDCRKMEELKTQAEAADVAKSQFLAT SHEI
Sbjct: 310 ITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEELKTQAEAADVAKSQFLATVSHEI 369
Query: 2141 RTPMNGVXXXXXX------------XXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRA 1998
RTPMNGV TQKDYAQTAQMCGRALITLINDVLDRA
Sbjct: 370 RTPMNGVLVVQRSKILPFDVGMLDMLLGTDLSMTQKDYAQTAQMCGRALITLINDVLDRA 429
Query: 1997 KIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQI 1818
KIEAGKLELEAVPFDLRSLMDDV+SLFSSKSREKCIELAVFVCD+VPKVVIGDPWR+RQI
Sbjct: 430 KIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVIGDPWRYRQI 489
Query: 1817 LTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGF 1638
LTNLVGNAVKFTERGHVFVRVCLAENS +EANQVL+G MNGK G+VE+TANGAFNTLSGF
Sbjct: 490 LTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNGKDGKVETTANGAFNTLSGF 549
Query: 1637 EAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRV 1458
+AAD RN+W YF E + S Q+D D VTL ISIEDTGVGIPL AQDRV
Sbjct: 550 QAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIEDTGVGIPLHAQDRV 609
Query: 1457 FTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKD 1278
FTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS P VGSTFTFSA LK S KD
Sbjct: 610 FTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFSAVLKRSCKD 669
Query: 1277 ISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFP 1098
S DS RSL+EALPTAFKGMKAILVDGRPVR AVTRYHL RLGI+++VVNN++ ++
Sbjct: 670 TSSDSKRSLSEALPTAFKGMKAILVDGRPVRGAVTRYHLNRLGIVVKVVNNLSMGLQTLA 729
Query: 1097 GQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK-NGQLSDGHKVVLLVTSEADKD 921
GQNG SREK S+LFIESD WRPETD+ LLN L E K NGQ+ + K+VLLVTSEADKD
Sbjct: 730 GQNGVKESREKLSMLFIESDIWRPETDILLLNRLHELKNNGQVHELPKLVLLVTSEADKD 789
Query: 920 KYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNK 741
+YGS FDIVM KPIRASTIAS +QQLLKV + ERKDNQNRPSFLRSLL+GKNIL+VDDNK
Sbjct: 790 RYGSAFDIVMYKPIRASTIASCLQQLLKVVMPERKDNQNRPSFLRSLLIGKNILIVDDNK 849
Query: 740 VNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQM 561
VNLRVAAAALKKYGA V CVESGKDA+SLLQ PH FDACFMDVQMPEMDGFEAT QIRQM
Sbjct: 850 VNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHCFDACFMDVQMPEMDGFEATRQIRQM 909
Query: 560 ELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
E+KANEERK L +EGST E HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL
Sbjct: 910 EVKANEERK-ALDLMEGSTFVESHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 968
Query: 380 YQAVSRLVVGTTDSAV 333
YQAVSRLVVGT +SAV
Sbjct: 969 YQAVSRLVVGTKESAV 984
>ref|XP_469566.1| putative histidine kinase [Oryza sativa (japonica cultivar-group)]
gb|AAO38834.1| putative histidine kinase [Oryza sativa (japonica cultivar-group)]
Length = 1013
Score = 1118 bits (2891), Expect = 0.0
Identities = 590/992 (59%), Positives = 733/992 (73%), Gaps = 32/992 (3%)
Frame = -2
Query: 3236 AARTKRWWR------GLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML 3075
A + +RWWR +A WVL + A +HW RR ++ +AEE LV MCEERARML
Sbjct: 25 AGKGRRWWRVKVKLSTVAVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARML 84
Query: 3074 QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH 2895
Q+QF V+VNHVHA+AIL++TF+++K PPA+DQDTFA Y ARTSFERPLL+GVA+AQRV H
Sbjct: 85 QDQFAVSVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVH 144
Query: 2894 HEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRAR 2715
+RE FE QQGW++ TM+ EP+P Q EYAPVI+SQ+T+SY+ +D+MSGEEDRENI RAR
Sbjct: 145 ADRESFERQQGWIIKTMKHEPSPAQDEYAPVIYSQETISYIEGLDVMSGEEDRENILRAR 204
Query: 2714 TTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVE 2535
TGKAVLT PFRL+ SNHLGVVLTF VY DLP D +VE RV AT GYLGGAFDVESLVE
Sbjct: 205 ATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAGYLGGAFDVESLVE 263
Query: 2534 NLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPF-LHVSMLDFGDPFRKHEMRC 2358
NLL +LAGNQ++VVNVYDVTN S+ +V+YG S + +P H LDFGDP RKH+M C
Sbjct: 264 NLLRQLAGNQELVVNVYDVTNHSNPLVMYG-SEVPLGIPSPSHTYTLDFGDPLRKHQMVC 322
Query: 2357 RYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVA 2178
RYR KL + WSAIT P G FVI ML+GY I AA+SRYD V EDCRKME LK +AEAAD+A
Sbjct: 323 RYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRKMEALKKRAEAADIA 382
Query: 2177 KSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRA 1998
KSQFLAT SHEIRTPMNGV TQ+DYAQTAQ+CG+ALI+LIN+VLDRA
Sbjct: 383 KSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRA 442
Query: 1997 KIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQI 1818
KIEAGK++LE+VPFDLRS++DDV+SLFSSKSREK IELAV+V + VP++++GDP RFRQI
Sbjct: 443 KIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQI 502
Query: 1817 LTNLVGNAVK--------FTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVEST--- 1671
+TNLVGN++K FTERGH+FV+V LA++SN+ + +NG G +
Sbjct: 503 ITNLVGNSIKITIFTLSQFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAI 562
Query: 1670 -ANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDT 1494
+G+ NTLSGFEAAD RN+W+ F + E +SDSD+VTL +S+EDT
Sbjct: 563 PTSGSHNTLSGFEAADSRNNWENF-------KLLLSYEKNEMPYESDSDKVTLVVSVEDT 615
Query: 1493 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTF 1314
G+GIPL AQ RVFTPFMQADSSTSRNYGGTGIGLSISKCL E+MGGQI+F S P VGSTF
Sbjct: 616 GIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTF 675
Query: 1313 TFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV 1134
TF+A L+ K+ DS LP++FKG+ A+LVD RPVR+ VT+YHL+RLGI +V
Sbjct: 676 TFTAVLRRCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTKYHLQRLGITSEV 735
Query: 1133 VNNMNAVVKAFPGQNGAAGS---REKASILFIESDFWRPETDVQLLNHLREQK-NGQLSD 966
V ++ G+NG++ + +++ +L IESD W P+ DV L L+E K + ++
Sbjct: 736 VGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRIHV 795
Query: 965 GHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKV--EIAERKDN------ 810
KV LL +E+DK K D V+ KP++AS +A+ + Q L + E++D+
Sbjct: 796 LPKVFLLSAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKRDDSGSLHG 855
Query: 809 QNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFD 630
++ L LL+GKNILVVDDNKVNLRVAA LKKYGA V CVESGKDA+SLLQ PH+FD
Sbjct: 856 RDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFD 915
Query: 629 ACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIE-GSTTAEYHLPVLAMTADVIQ 453
C MD+QMPEMDGFEAT QIR ME KANE+ + + E + TA++HLP+LAMTADVIQ
Sbjct: 916 LCLMDIQMPEMDGFEATRQIRAMEGKANEQADDSESGSEIAAKTAKWHLPILAMTADVIQ 975
Query: 452 ATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
AT+EEC K GMDGYVSKPF+E+QL+QAV + +
Sbjct: 976 ATHEECTKCGMDGYVSKPFEEKQLFQAVQKFL 1007
>dbj|BAE80688.1| histidine kinase [Zea mays]
Length = 995
Score = 1097 bits (2838), Expect = 0.0
Identities = 581/960 (60%), Positives = 717/960 (74%), Gaps = 10/960 (1%)
Frame = -2
Query: 3206 LAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAI 3027
+A WVL A+ +H R ++ +AEE LVSMCEERARMLQ+QF V+VNHVHA+AI
Sbjct: 42 VAVLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAI 101
Query: 3026 LISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNT 2847
L++TF++EK PPA+DQ+TFA YTARTSFERPLL+GVA+AQRV H +RE FE QQGW++ T
Sbjct: 102 LVATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKT 161
Query: 2846 MQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGS 2667
M+ EP+P Q EYAPV++SQ+TVSY+ +DMMSGEEDRENI R+R +GKAVLT PFRL+ S
Sbjct: 162 MKHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-S 220
Query: 2666 NHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNV 2487
NHLGVVLTF VY DL +DA E RV AT GYLGG+FDVESLVENLL +LAGNQ++VVNV
Sbjct: 221 NHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAGNQELVVNV 280
Query: 2486 YDVTNASDAMVLYGPS-SLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNP 2310
YDVTN+S+ +V+YG SL P H+ MLDFGDPFRKH M CRYR K +PWSAI++
Sbjct: 281 YDVTNSSNPLVMYGSEVSLGNPSPS-HICMLDFGDPFRKHHMVCRYRNKPQLPWSAISSS 339
Query: 2309 LGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPM 2130
G FVI ML+GY + AA+SRYD V EDCRKMEELK QAEAADVAKSQFLAT SHEIRTPM
Sbjct: 340 SGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPM 399
Query: 2129 NGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDL 1950
NGV TQ+D+AQTAQ+CG+ALI+LIN+VLDRAKIEAGKL+LE+VPFDL
Sbjct: 400 NGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLESVPFDL 459
Query: 1949 RSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGH 1770
RS++DDV+SLFSSKSREK IELAV+V + VP++++GDP RFRQI+TNLVGN++KFTERGH
Sbjct: 460 RSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGH 519
Query: 1769 VFVRVCLAENSNMEANQVLHGAMNGKGG-RVESTA---NGAFNTLSGFEAADRRNSWQYF 1602
+FV+V LA++SN+ + NG G + E TA + + NTLSGFEAAD RNSW+ F
Sbjct: 520 IFVQVHLADHSNLATESKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADSRNSWENF 579
Query: 1601 XXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTS 1422
+ E +S SD+VTL +S+EDTG+GIPL AQ +VFTPFMQADSSTS
Sbjct: 580 -------KLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTS 632
Query: 1421 RNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEA 1242
R YGGTGIGLSISKCL ELMGGQI+F S P VGSTFTF+A L+ + GDS +
Sbjct: 633 RTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRCDRSAIGDSKPVMLHP 692
Query: 1241 LPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAA-GSREK 1065
LP++FKG+ A+LVD RPVR+ VT+YHL+RLGI VV + + G+NG++ S ++
Sbjct: 693 LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSTKQ 752
Query: 1064 ASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCK 885
+L IESD W + DV L + L E K K +LL +E+ K K D V+ K
Sbjct: 753 PCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLPKTILLAAAESGKLKAHYAVDSVITK 812
Query: 884 PIRASTIASSIQQLLKVEIA--ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAAL 711
P++AS +A+ + Q L + + ER+DN L LL+GKNILVVDDNKVNLRVAA L
Sbjct: 813 PLKASGLAACLFQTLGITQSSNERRDNSGS---LHGLLLGKNILVVDDNKVNLRVAAGTL 869
Query: 710 KKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER-K 534
KK+GA V CVESGKDA++ LQ PH+F C MD+QMPEMDGFEAT QIR ME KANE+
Sbjct: 870 KKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVA 929
Query: 533 NKLASIEGST-TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ +G+T A +HLPVLAMTADVIQAT+EEC K GMDGYV+KPF+E+QL+QA+ + +
Sbjct: 930 CDDSDTDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQALQKFL 989
>dbj|BAE80687.1| histidine kinase [Zea mays]
Length = 995
Score = 1096 bits (2835), Expect = 0.0
Identities = 580/955 (60%), Positives = 714/955 (74%), Gaps = 10/955 (1%)
Frame = -2
Query: 3191 WVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTF 3012
WVL A +H R ++ +AEE LVSMCEERARMLQ+QF V+VNHVHA+AIL++TF
Sbjct: 47 WVLGAAALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAILVATF 106
Query: 3011 NFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQREP 2832
++EK PPA+DQ+TFA YTARTSFERPLL+GVA+AQRV H +RE FE QQGW++ TM+ EP
Sbjct: 107 HYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTMKHEP 166
Query: 2831 APPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGV 2652
+P Q EYAPV++SQ+TVSY+ +DMMSGEEDRENI R+R +GKAVLT PFRL+ SNHLGV
Sbjct: 167 SPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGV 225
Query: 2651 VLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTN 2472
VLTF VY DL +DA E RV AT GYLGG+FDVESLVENLL +LAGNQ++VVNVYDVTN
Sbjct: 226 VLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAGNQELVVNVYDVTN 285
Query: 2471 ASDAMVLYGPS-SLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFV 2295
+S+ +V+YG SL P H+ MLDFGDPFRKH M CRYR K +PWSAI++ G FV
Sbjct: 286 SSNPLVMYGSEVSLGNPSPS-HICMLDFGDPFRKHHMVCRYRNKPQLPWSAISSSSGVFV 344
Query: 2294 IWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXX 2115
I ML+GY + AA+SRYD V EDCRKMEELK QAEAADVAKSQFLAT SHEIRTPMNGV
Sbjct: 345 ICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLG 404
Query: 2114 XXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMD 1935
TQ+D+AQTAQ+CG+ALI+LIN+VLDRAKIEAGKL+LE+VPFDLRS++D
Sbjct: 405 MLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDLESVPFDLRSILD 464
Query: 1934 DVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
DV+SLFSSKSREK IELAV+V + VP++++GDP RFRQI+TNLVGN++KFTERGH+FV+V
Sbjct: 465 DVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGHIFVQV 524
Query: 1754 CLAENSNMEANQVLHGAMNGKGG-RVESTA---NGAFNTLSGFEAADRRNSWQYFXXXXX 1587
LA++SN+ + NG G + E TA + + NTLSGFEAAD RNSW+ F
Sbjct: 525 HLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADSRNSWENF----- 579
Query: 1586 XXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGG 1407
+ E +S SD+VTL +S+EDTG+GIPL AQ +VFTPFMQADSSTSR YGG
Sbjct: 580 --KLLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGG 637
Query: 1406 TGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAF 1227
TGIGLSISKCL ELMGGQI+F S P VGSTFTF+A L+ + GDS + LP++F
Sbjct: 638 TGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQRCDRSAIGDSKPVMLHPLPSSF 697
Query: 1226 KGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAA-GSREKASILF 1050
KG+ A+LVD RPVR+ VT+YHL+RLGI VV + + G+NG++ S ++ +L
Sbjct: 698 KGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSTKQPCMLL 757
Query: 1049 IESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRAS 870
IESD W + DV L + L E K K +LL +E+ K K D V+ KP++AS
Sbjct: 758 IESDSWGFKIDVPLRSRLLEMKQNGPPGLPKTILLAAAESGKLKAHYAVDSVITKPLKAS 817
Query: 869 TIASSIQQLLKVEIA--ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGA 696
+A+ + Q L + + ER+DN L LL+GKNILVVDDNKVNLRVAA LKK+GA
Sbjct: 818 GLAACLFQTLGITQSSNERRDNSGS---LHGLLLGKNILVVDDNKVNLRVAAGTLKKFGA 874
Query: 695 NVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER-KNKLAS 519
V CVESGKDA++ LQ PH+F C MD+QMPEMDGFEAT QIR ME KANE+ +
Sbjct: 875 KVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDDSE 934
Query: 518 IEGST-TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+G+T A +HLPVLAMTADVIQAT+EEC K GMDGYV+KPF+E+QL+QA+ + +
Sbjct: 935 TDGATRAARWHLPVLAMTADVIQATHEECTKYGMDGYVTKPFEEKQLFQALQKFL 989
>dbj|BAE80689.1| histidine kinase [Zea mays]
Length = 996
Score = 1090 bits (2820), Expect = 0.0
Identities = 575/953 (60%), Positives = 708/953 (74%), Gaps = 8/953 (0%)
Frame = -2
Query: 3191 WVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTF 3012
WVL + +H R ++ +AEE LVSMCEERARMLQ+QF V+VNHVHA+AIL++TF
Sbjct: 47 WVLGSAALWVFLHSYFRHAALRKAEEALVSMCEERARMLQDQFAVSVNHVHALAILVATF 106
Query: 3011 NFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQREP 2832
++EK PPA+DQ+TFA YTARTSFERPLL+GVA+AQRV H +RE FE QGW++ TM+ EP
Sbjct: 107 HYEKHPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHADREGFERHQGWIIKTMKHEP 166
Query: 2831 APPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGV 2652
+P Q EYAPV++SQ+TVSY+ +DMMSGEEDRENI R+R +GKAVLT PFRL+ SNHLGV
Sbjct: 167 SPAQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGV 225
Query: 2651 VLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTN 2472
VLTF VY DLP+DA E RV AT GYLGGAFDVESLVENLL +LAGNQ++V+NVYDVTN
Sbjct: 226 VLTFPVYHADLPSDAKEEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVINVYDVTN 285
Query: 2471 ASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVI 2292
S+ +V+YG H+ MLDFGDPFRKH M CRYR K +PWSAI+ P G FVI
Sbjct: 286 ISNPLVMYGSEVPLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVI 345
Query: 2291 WMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXX 2112
ML+GY AA+SRYD V EDCRKMEELK QAEAADVAKSQFLAT SHEIRTPMNGV
Sbjct: 346 CMLVGYIAGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGM 405
Query: 2111 XXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDD 1932
TQ+D+AQTAQ+CG+ALI+LIN+VLDRAKIEA KL+LE+VPFDLRS++DD
Sbjct: 406 LDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEARKLDLESVPFDLRSILDD 465
Query: 1931 VVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC 1752
V+SLFSSKSREK IEL V+V + VP++++GDP RFRQI+TNLVGN++KFTERGH+FV+V
Sbjct: 466 VISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVH 525
Query: 1751 LAENSNMEANQVLHGAMNGKGGRV-ESTA---NGAFNTLSGFEAADRRNSWQYFXXXXXX 1584
LA++SN+ + NG G E TA + + NTLSGFEAAD RNSW+ F
Sbjct: 526 LADHSNLATESKVEPVANGMNGHTNEKTAVATSVSLNTLSGFEAADSRNSWENF------ 579
Query: 1583 XXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGT 1404
+ E +S SD+VTL +S+EDTG+GIPL AQ +VFTPFMQADSSTSR YGGT
Sbjct: 580 -KLLLSYEKSEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSSTSRTYGGT 638
Query: 1403 GIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFK 1224
GIGLSISKCL ELMGGQI+F S P VGSTFTF+A LK + GDS + LP++FK
Sbjct: 639 GIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAVLKRCDRSAIGDSKPVMLHPLPSSFK 698
Query: 1223 GMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAA-GSREKASILFI 1047
G+ A+LVD RPVR+ VT+YHL+RLGI VV + + G+NG++ S ++ +L I
Sbjct: 699 GLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLTSMKQPCMLLI 758
Query: 1046 ESDFWRPETDVQLLNHLREQK-NGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRAS 870
ESD W DV L + L E K NG K++LL +E+ K K D V+ KP++AS
Sbjct: 759 ESDSWGFNIDVSLQSRLLEMKQNGHTHVLPKIILLAAAESGKLKEHYAVDSVITKPLKAS 818
Query: 869 TIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANV 690
+A+ + Q L ++ + + + N S L LL+GKNILVVDDNKVNLRVAA LKK+GA V
Sbjct: 819 ALAACLFQTLGIKQSSNERSDNSGS-LYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKV 877
Query: 689 SCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER-KNKLASIE 513
CVESGKDA++LL P++F C MD+QMPEMDGFEAT QIR ME KANE+ + I+
Sbjct: 878 ECVESGKDALALLHVPYKFHLCLMDIQMPEMDGFEATKQIRAMEAKANEQAVACDDSEID 937
Query: 512 GST-TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
G+T A + LPVLAMTADVIQAT+EEC K GMDGYV+KPF+E+QL+QA+ + +
Sbjct: 938 GTTRAARWRLPVLAMTADVIQATHEECTKCGMDGYVTKPFEEKQLFQALQKFL 990
>emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
Length = 981
Score = 1041 bits (2693), Expect = 0.0
Identities = 553/981 (56%), Positives = 698/981 (71%), Gaps = 11/981 (1%)
Frame = -2
Query: 3272 WAAQAGMGGK-YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMC 3096
W Q G K Y + R W W++ S +++ + D R E L SMC
Sbjct: 12 WNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNEVLGSMC 71
Query: 3095 EERARMLQEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVA 2916
E+RARMLQ+QF V+VNHVHA+A+L+STF++ K+P AIDQ+TFA+YTART+FERPLL+GVA
Sbjct: 72 EQRARMLQDQFNVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVA 131
Query: 2915 FAQRVFHHEREMFESQQGWVMNTMQREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDR 2736
+AQRV H ER++FE Q GW++ TM++EP+P + EYAPVIFSQ+TVSY+ +DMMSGEEDR
Sbjct: 132 YAQRVIHSERDIFEKQHGWMIRTMEKEPSPDRDEYAPVIFSQETVSYIESLDMMSGEEDR 191
Query: 2735 ENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAF 2556
ENI RAR TGKAVLT PFRLLGS+HLGVVLTF VY+ LP+ + E+R+EAT GY+GGAF
Sbjct: 192 ENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAGYVGGAF 251
Query: 2555 DVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFR 2376
DVESLVENLL +LAGNQ I+VNVYDVTN+SD +V+YG D + H S LDFGDPFR
Sbjct: 252 DVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFR 311
Query: 2375 KHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQA 2196
KH M CRY+Q+ P W+A+T FVI +L+GY + A + KV +D +M+ LK +A
Sbjct: 312 KHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRA 371
Query: 2195 EAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLIN 2016
EAADVAKSQFLAT SHEIRTPMNG+ TQKDYAQTAQ CG+ALI LIN
Sbjct: 372 EAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALIN 431
Query: 2015 DVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDP 1836
+VLDRAKIEAGKLELEAVPFD+RS++DDV+SLFS KSR+K +ELAVFV D VP++VIGDP
Sbjct: 432 EVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDP 491
Query: 1835 WRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAF 1656
RFRQI+TNLVGN+VKFTERGH+FV+V LAENS + + ++ G V F
Sbjct: 492 GRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFV--LDGREF 549
Query: 1655 NTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENS-NQSDSDRVTLAISIEDTGVGIP 1479
TLSG EAAD +NSW F ++ D VTL +S+EDTG+GI
Sbjct: 550 QTLSGREAADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTGIGIL 609
Query: 1478 LQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSAT 1299
L AQ+RVFTPFMQADSSTSRNYGGTGIGLSISKCL ELMGGQI+F S P +GSTF+F+A
Sbjct: 610 LHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAV 669
Query: 1298 LKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMN 1119
K+ D + +E LP +F+GMKAI+VD + VR++VTRYHLKRLGI+++V N++N
Sbjct: 670 FGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSIN 729
Query: 1118 AVVKAFPGQNGAAGSREK--ASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLL 945
F +NG+ R ++ +E D + + +++HL + NG K++LL
Sbjct: 730 MAASLF-RENGSTLPRNTILPDMILVEKDILNSDEECGIIHHLNWKPNGSSVKFPKLILL 788
Query: 944 ----VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRP---SFLR 786
T+E DK + D V+ KP+RA+ +A+ +QQ+L V+ NQ RP +FL+
Sbjct: 789 ATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGVK------NQRRPNGSAFLQ 842
Query: 785 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQM 606
SLL GK IL+VDDN+VN RVAA ALKK+GA+V C +SGK A+ LLQ PH FDACFMD+QM
Sbjct: 843 SLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQM 902
Query: 605 PEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKS 426
PEMDGFEAT +IR ME++AN K L++ EG +P+LAMTADVI ATYEEC+K
Sbjct: 903 PEMDGFEATRRIRTMEVEAN---KGGLSATEGKRP----IPILAMTADVIHATYEECLKC 955
Query: 425 GMDGYVSKPFDEEQLYQAVSR 363
GM+GYVSKPF+EE LY+ V+R
Sbjct: 956 GMNGYVSKPFEEENLYKEVAR 976
>dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 997 bits (2578), Expect = 0.0
Identities = 542/959 (56%), Positives = 677/959 (70%), Gaps = 17/959 (1%)
Frame = -2
Query: 3188 VLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTFN 3009
++ + S + W + + R EE LVSMC++RARMLQ+QF V+VNHVHA+AIL+STF+
Sbjct: 136 IIVGFISSGIYQWMDDANKI-RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFH 194
Query: 3008 FEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQR-EP 2832
+ K+P AIDQ+TFA+YTART+FERPLL+GVA+A++V + EREMFE Q WV+ TM R EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 2831 APPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGV 2652
+P + EYAPVIFSQD+VSYL +DMMSGEEDRENI RAR TGKAVLT+PFRLL ++HLGV
Sbjct: 255 SPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGV 314
Query: 2651 VLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTN 2472
VLTF VY+ LP + +VE+R+ AT GYLGGAFDVESLVENLL +LAGNQ IVV+VYD+TN
Sbjct: 315 VLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITN 374
Query: 2471 ASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVI 2292
ASD +V+YG + H S LDFGDPFRKH+M CRY QK P+P + +T F I
Sbjct: 375 ASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAI 434
Query: 2291 WMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXX 2112
L+GY + A KV +D +M+ELK +AEAADVAKSQFLAT SHEIRTPMNG+
Sbjct: 435 GFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 494
Query: 2111 XXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDD 1932
TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEAGKLELE+VPFD+RS++DD
Sbjct: 495 LAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDD 554
Query: 1931 VVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC 1752
V+SLFS +SR K IELAVFV D VP++V GD RFRQI+ NLVGN+VKFTE+GH+FV+V
Sbjct: 555 VLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVH 614
Query: 1751 LAENSNMEANQVLHGAMNG--KGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXX 1578
LAE S E+ A+NG + + ++NTLSG+EAAD RNSW F
Sbjct: 615 LAEQSKDESEP--KNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQ 672
Query: 1577 XXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGI 1398
S S V L +SIEDTG+GIPL AQ RVF PFMQADSSTSRNYGGTGI
Sbjct: 673 SL--------SEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGI 724
Query: 1397 GLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYK-DISGDSSRSLTEALPTAFKG 1221
GLSISKCL ELM GQI+F S P +GSTF F+A L+ K + E LP+ FKG
Sbjct: 725 GLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKG 784
Query: 1220 MKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVV---KAFPGQNGAAGSREKASILF 1050
MKAI+VD +PVR+AVTRYH+KRLGI + VV ++ V AF ++ + ++
Sbjct: 785 MKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPTKPQLDMIL 844
Query: 1049 IESDFW----RPETDVQLLNHLREQKNGQL-SDGHKVVLLVT----SEADKDKYGSIFDI 897
+E D W +++++LLN + NG + K+ L T SE D+ K D
Sbjct: 845 VEKDSWISTEDNDSEIRLLN---SRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADT 901
Query: 896 VMCKPIRASTIASSIQQLLKV-EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAA 720
V+ KP+RAS I + +QQ+L++ + ++ + P+ L+SLL GK ILVVDDN VN RVAA
Sbjct: 902 VIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVAA 961
Query: 719 AALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
ALKK+GA V C ESG+ A+ LLQ PH FDACFMD+QMP+MDGFEAT QIR ME +A E+
Sbjct: 962 GALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKEAKEK 1021
Query: 539 RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
T E+HLP+LAMTADVI ATYEEC+KSGMDGYVSKPF+EE LY++V++
Sbjct: 1022 -----------TNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAK 1069
>dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 997 bits (2578), Expect = 0.0
Identities = 542/959 (56%), Positives = 677/959 (70%), Gaps = 17/959 (1%)
Frame = -2
Query: 3188 VLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTFN 3009
++ + S + W + + R EE LVSMC++RARMLQ+QF V+VNHVHA+AIL+STF+
Sbjct: 113 IIVGFISSGIYQWMDDANKI-RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFH 171
Query: 3008 FEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQR-EP 2832
+ K+P AIDQ+TFA+YTART+FERPLL+GVA+A++V + EREMFE Q WV+ TM R EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 2831 APPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGV 2652
+P + EYAPVIFSQD+VSYL +DMMSGEEDRENI RAR TGKAVLT+PFRLL ++HLGV
Sbjct: 232 SPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGV 291
Query: 2651 VLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTN 2472
VLTF VY+ LP + +VE+R+ AT GYLGGAFDVESLVENLL +LAGNQ IVV+VYD+TN
Sbjct: 292 VLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITN 351
Query: 2471 ASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVI 2292
ASD +V+YG + H S LDFGDPFRKH+M CRY QK P+P + +T F I
Sbjct: 352 ASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAI 411
Query: 2291 WMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXX 2112
L+GY + A KV +D +M+ELK +AEAADVAKSQFLAT SHEIRTPMNG+
Sbjct: 412 GFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 471
Query: 2111 XXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDD 1932
TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEAGKLELE+VPFD+RS++DD
Sbjct: 472 LAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDD 531
Query: 1931 VVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC 1752
V+SLFS +SR K IELAVFV D VP++V GD RFRQI+ NLVGN+VKFTE+GH+FV+V
Sbjct: 532 VLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVH 591
Query: 1751 LAENSNMEANQVLHGAMNG--KGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXX 1578
LAE S E+ A+NG + + ++NTLSG+EAAD RNSW F
Sbjct: 592 LAEQSKDESEP--KNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQ 649
Query: 1577 XXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGI 1398
S S V L +SIEDTG+GIPL AQ RVF PFMQADSSTSRNYGGTGI
Sbjct: 650 SL--------SEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGI 701
Query: 1397 GLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYK-DISGDSSRSLTEALPTAFKG 1221
GLSISKCL ELM GQI+F S P +GSTF F+A L+ K + E LP+ FKG
Sbjct: 702 GLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKG 761
Query: 1220 MKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVV---KAFPGQNGAAGSREKASILF 1050
MKAI+VD +PVR+AVTRYH+KRLGI + VV ++ V AF ++ + ++
Sbjct: 762 MKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPTKPQLDMIL 821
Query: 1049 IESDFW----RPETDVQLLNHLREQKNGQL-SDGHKVVLLVT----SEADKDKYGSIFDI 897
+E D W +++++LLN + NG + K+ L T SE D+ K D
Sbjct: 822 VEKDSWISTEDNDSEIRLLN---SRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADT 878
Query: 896 VMCKPIRASTIASSIQQLLKV-EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAA 720
V+ KP+RAS I + +QQ+L++ + ++ + P+ L+SLL GK ILVVDDN VN RVAA
Sbjct: 879 VIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVAA 938
Query: 719 AALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
ALKK+GA V C ESG+ A+ LLQ PH FDACFMD+QMP+MDGFEAT QIR ME +A E+
Sbjct: 939 GALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKEAKEK 998
Query: 539 RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
T E+HLP+LAMTADVI ATYEEC+KSGMDGYVSKPF+EE LY++V++
Sbjct: 999 -----------TNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAK 1046
>ref|NP_849925.1| WOL (CYTOKININ RESPONSE 1) [Arabidopsis thaliana]
dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
Length = 1080
Score = 996 bits (2576), Expect = 0.0
Identities = 541/959 (56%), Positives = 676/959 (70%), Gaps = 17/959 (1%)
Frame = -2
Query: 3188 VLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTFN 3009
++ + S + W + + R EE LVSMC++RARMLQ+QF V+VNHVHA+AIL+STF+
Sbjct: 136 IIVGFISSGIYQWMDDANKI-RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFH 194
Query: 3008 FEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQR-EP 2832
+ K+P AIDQ+TFA+YTART+FERPLL+GVA+A++V + EREMFE Q WV+ TM R EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 2831 APPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGV 2652
+P + EYAPVIFSQD+VSYL +DMMSGEEDRENI RAR TGKAVLT+PFRLL ++HLGV
Sbjct: 255 SPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGV 314
Query: 2651 VLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTN 2472
VLTF VY+ LP + +VE+R+ AT GYLGGAFDVESLVENLL +LAGNQ IVV+VYD+TN
Sbjct: 315 VLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITN 374
Query: 2471 ASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVI 2292
ASD +V+YG + H S LDFGDPFRKH+M CRY QK P+P + +T F I
Sbjct: 375 ASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAI 434
Query: 2291 WMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXX 2112
L+GY + A KV +D +M+ELK +AEAADVAKSQFLAT SHEIRTPMNG+
Sbjct: 435 GFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 494
Query: 2111 XXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDD 1932
TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEAGKLELE+VPFD+RS++DD
Sbjct: 495 LAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDD 554
Query: 1931 VVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC 1752
V+SLFS +SR K IELAVFV D VP++V GD RFRQI+ NLVGN+VKFTE+GH+FV+V
Sbjct: 555 VLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVH 614
Query: 1751 LAENSNMEANQVLHGAMNG--KGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXX 1578
LAE S E+ A+NG + + ++NTLSG+EAAD RNSW F
Sbjct: 615 LAEQSKDESEP--KNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQ 672
Query: 1577 XXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGI 1398
S S V L +SIEDTG+GIPL AQ RVF PFMQADSSTSRNYGGTGI
Sbjct: 673 SL--------SEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGI 724
Query: 1397 GLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYK-DISGDSSRSLTEALPTAFKG 1221
GLSISKCL ELM GQI+F S P +GSTF F+A L+ K + E LP+ FKG
Sbjct: 725 GLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKG 784
Query: 1220 MKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVV---KAFPGQNGAAGSREKASILF 1050
MKAI+VD +PVR+AVTRYH+KRLGI + VV ++ V AF ++ + ++
Sbjct: 785 MKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPTKPQLDMIL 844
Query: 1049 IESDFW----RPETDVQLLNHLREQKNGQL-SDGHKVVLLVT----SEADKDKYGSIFDI 897
+E D W +++++LLN + NG + K+ L T SE D+ K D
Sbjct: 845 VEKDSWISTEDNDSEIRLLN---SRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADT 901
Query: 896 VMCKPIRASTIASSIQQLLKV-EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAA 720
V+ KP+RAS I + +QQ+L++ + ++ + P+ L+SLL GK ILVVDDN VN RVAA
Sbjct: 902 VIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVAA 961
Query: 719 AALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
ALKK+GA V C ESG+ A+ LLQ PH FDACFMD+QMP+MDGFEAT QIR ME + E+
Sbjct: 962 GALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEK 1021
Query: 539 RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
T E+HLP+LAMTADVI ATYEEC+KSGMDGYVSKPF+EE LY++V++
Sbjct: 1022 -----------TNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAK 1069
>ref|NP_565277.1| WOL (CYTOKININ RESPONSE 1) [Arabidopsis thaliana]
ref|NP_973396.1| WOL (CYTOKININ RESPONSE 1) [Arabidopsis thaliana]
emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
Length = 1057
Score = 996 bits (2576), Expect = 0.0
Identities = 541/959 (56%), Positives = 676/959 (70%), Gaps = 17/959 (1%)
Frame = -2
Query: 3188 VLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTFN 3009
++ + S + W + + R EE LVSMC++RARMLQ+QF V+VNHVHA+AIL+STF+
Sbjct: 113 IIVGFISSGIYQWMDDANKI-RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFH 171
Query: 3008 FEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQR-EP 2832
+ K+P AIDQ+TFA+YTART+FERPLL+GVA+A++V + EREMFE Q WV+ TM R EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 2831 APPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGV 2652
+P + EYAPVIFSQD+VSYL +DMMSGEEDRENI RAR TGKAVLT+PFRLL ++HLGV
Sbjct: 232 SPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGV 291
Query: 2651 VLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTN 2472
VLTF VY+ LP + +VE+R+ AT GYLGGAFDVESLVENLL +LAGNQ IVV+VYD+TN
Sbjct: 292 VLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITN 351
Query: 2471 ASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVI 2292
ASD +V+YG + H S LDFGDPFRKH+M CRY QK P+P + +T F I
Sbjct: 352 ASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAI 411
Query: 2291 WMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXX 2112
L+GY + A KV +D +M+ELK +AEAADVAKSQFLAT SHEIRTPMNG+
Sbjct: 412 GFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGM 471
Query: 2111 XXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDD 1932
TQ+DYAQTAQ+CG+ALI LIN+VLDRAKIEAGKLELE+VPFD+RS++DD
Sbjct: 472 LAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLELESVPFDIRSILDD 531
Query: 1931 VVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC 1752
V+SLFS +SR K IELAVFV D VP++V GD RFRQI+ NLVGN+VKFTE+GH+FV+V
Sbjct: 532 VLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNSVKFTEKGHIFVKVH 591
Query: 1751 LAENSNMEANQVLHGAMNG--KGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXX 1578
LAE S E+ A+NG + + ++NTLSG+EAAD RNSW F
Sbjct: 592 LAEQSKDESEP--KNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNSWDSFKHLVSEEQ 649
Query: 1577 XXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGI 1398
S S V L +SIEDTG+GIPL AQ RVF PFMQADSSTSRNYGGTGI
Sbjct: 650 SL--------SEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRNYGGTGI 701
Query: 1397 GLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYK-DISGDSSRSLTEALPTAFKG 1221
GLSISKCL ELM GQI+F S P +GSTF F+A L+ K + E LP+ FKG
Sbjct: 702 GLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKG 761
Query: 1220 MKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVV---KAFPGQNGAAGSREKASILF 1050
MKAI+VD +PVR+AVTRYH+KRLGI + VV ++ V AF ++ + ++
Sbjct: 762 MKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPTKPQLDMIL 821
Query: 1049 IESDFW----RPETDVQLLNHLREQKNGQL-SDGHKVVLLVT----SEADKDKYGSIFDI 897
+E D W +++++LLN + NG + K+ L T SE D+ K D
Sbjct: 822 VEKDSWISTEDNDSEIRLLN---SRTNGNVHHKSPKLALFATNITNSEFDRAKSAGFADT 878
Query: 896 VMCKPIRASTIASSIQQLLKV-EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAA 720
V+ KP+RAS I + +QQ+L++ + ++ + P+ L+SLL GK ILVVDDN VN RVAA
Sbjct: 879 VIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVNRRVAA 938
Query: 719 AALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
ALKK+GA V C ESG+ A+ LLQ PH FDACFMD+QMP+MDGFEAT QIR ME + E+
Sbjct: 939 GALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEATRQIRMMEKETKEK 998
Query: 539 RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
T E+HLP+LAMTADVI ATYEEC+KSGMDGYVSKPF+EE LY++V++
Sbjct: 999 -----------TNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAK 1046
>gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens]
Length = 1075
Score = 914 bits (2362), Expect = 0.0
Identities = 510/1011 (50%), Positives = 660/1011 (65%), Gaps = 60/1011 (5%)
Frame = -2
Query: 3215 WRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHA 3036
W +A WV+ S +++ +R D ++R E L +MCE RARML+EQF ++NHV A
Sbjct: 75 WHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEGRARMLEEQFKASMNHVRA 134
Query: 3035 IAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWV 2856
+ L++TF+ K P AI+Q+TFA Y RT+FERPL++GVA+A+RV H R +FES+ GW
Sbjct: 135 LTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYAERVLHANRNLFESKHGWT 194
Query: 2855 MNTM-QREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFR 2679
+ M +E EYAP +Q+T+S+L +DMMSG+EDRENI RAR +GK LTNPFR
Sbjct: 195 IKEMFSKEKQRDFDEYAPTTMTQETLSHLTSLDMMSGQEDRENIIRARESGKGALTNPFR 254
Query: 2678 LLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDI 2499
LL S HLGVV TFAVY DLP DA+ E R++AT GYLGGAFDVE+LVENLL ++AG+Q I
Sbjct: 255 LLESKHLGVVFTFAVYTTDLPEDATKEDRIKATAGYLGGAFDVETLVENLLRQMAGSQII 314
Query: 2498 VVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAI 2319
VNVYD+TN + +V+YG +++ E++ +VS LDFGDP R+HEMRCR+++ PW+AI
Sbjct: 315 AVNVYDITNETMPLVMYGYTNV-EKMQSTYVSDLDFGDPARRHEMRCRFKEDALPPWTAI 373
Query: 2318 TNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIR 2139
+ +G FVI L+G+ + A+ +R DKV E+CR +ELK +A+ A +AKSQFLAT SHEIR
Sbjct: 374 STSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIR 433
Query: 2138 TPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVP 1959
TPMNGV Q DYAQTA G+ALI LIN+VLD+AKIE+G+LE E VP
Sbjct: 434 TPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKALINLINEVLDQAKIESGRLEFEHVP 493
Query: 1958 FDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE 1779
FDLR+++DDV+SLF KSR IELAV+V VPK+++GDP RFRQI+TNLVGN++KFTE
Sbjct: 494 FDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKILVGDPGRFRQIITNLVGNSIKFTE 553
Query: 1778 RGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANG-------------AFNTLSGF 1638
GH+FV V L E+ NM M+G GG + T +G FNTLSG
Sbjct: 554 AGHIFVCVHLNEDVNM--------VMDGSGGDADDTMDGEVESAGPLNDMNYRFNTLSGR 605
Query: 1637 EAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRV 1458
E AD RNSW+ F S SD V L +S+EDTGVGIPL QDRV
Sbjct: 606 ETADYRNSWEMFERLLAQEQSHNDTW----SYSDSSDVVNLVVSVEDTGVGIPLHVQDRV 661
Query: 1457 FTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKD 1278
FTPFMQADSSTSRNYGGTGIGLSIS+CL ELM G++ F S P VGSTFTF+ L+ +
Sbjct: 662 FTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPKVGSTFTFTVELQRVPAN 721
Query: 1277 I------SGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNA 1116
I G +S T L T F+GM+ ++VDGR VR VTR+HLKRLG+ ++V + ++
Sbjct: 722 IPERILREGRNSYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLKRLGLQVEVAHTVSE 781
Query: 1115 VVK-----AFPGQNGAAGSREKAS----ILFIESDFWRPETDVQL--------LNHLREQ 987
+ A G + GSR + ++F++ D W P T + + HL Q
Sbjct: 782 AAEILSTVADQGTCSSRGSRGSLAGNIEMIFVDKDAWGPGTGMNFRSLLGESAIGHLGYQ 841
Query: 986 K---------NGQLSDGH-------KVVLLVTSEADKD----KYGSIFDIVMCKPIRAST 867
+G++ G+ ++VL+ TS D + K D V+ KP+RAS
Sbjct: 842 SSRTSYQYRTSGRIPFGYPVIQSMKRMVLVATSMTDMELGMVKASGFVDTVVRKPLRASL 901
Query: 866 IASSIQQLLKVEIAERKDNQNRPS---FLRSLLVGKNILVVDDNKVNLRVAAAALKKYGA 696
IA+ ++Q+L V R Q S L++LL GK ILVVDDN VN +VAA AL KYGA
Sbjct: 902 IAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVNRKVAAGALHKYGA 961
Query: 695 NVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASI 516
V CV SG+ AI L+PPH FDACFMDVQMPEMDGFEATG IR+ E A E + + A +
Sbjct: 962 QVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFEATGLIRKAEAAAAE--RGQAAGL 1019
Query: 515 EGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ H+P+LAMTADVIQAT EEC++ GMDGYV+KPFDE QLYQAV++
Sbjct: 1020 P-TFKRRLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHQLYQAVAK 1069
>ref|NP_564276.1| AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) [Arabidopsis thaliana]
dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
Length = 1036
Score = 912 bits (2357), Expect = 0.0
Identities = 501/984 (50%), Positives = 657/984 (66%), Gaps = 22/984 (2%)
Frame = -2
Query: 3224 KRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNH 3045
K WWR L WV+ V+ S W +M++ +E L SMC+ERARMLQ+QF V++NH
Sbjct: 89 KAWWRKLVVV-WVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNH 147
Query: 3044 VHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQ 2865
V A++ILISTF+ K P AIDQ TF++YT RTSFERPL +GVA+A RV H ERE FE QQ
Sbjct: 148 VQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQ 207
Query: 2864 GWVMNTMQR----------------EPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRE 2733
GW + M EP+P Q EYAPVIF+QDTVS++ +DM+SG+EDRE
Sbjct: 208 GWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRE 267
Query: 2732 NIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFD 2553
N+ RAR++GK VLT PF L+ +N LGV+LTFAVY+ DLP++A+ ++R+EAT GYLGG FD
Sbjct: 268 NVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFD 327
Query: 2552 VESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRK 2373
+ESLVENLL +LA Q I+VNVYD+TN S + +YG + + + VS L FGDP RK
Sbjct: 328 IESLVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADGLE--RVSPLIFGDPLRK 385
Query: 2372 HEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAE 2193
HEMRCR++QK P P ++ G VI +L+ + I A SR KV EDC KM++LK +AE
Sbjct: 386 HEMRCRFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAE 445
Query: 2192 AADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLIND 2013
AADVAKSQFLAT SHEIRTPMNGV TQ+DY +TAQ G+AL++LIN+
Sbjct: 446 AADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINE 505
Query: 2012 VLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPW 1833
VLD+AKIE+GKLELE V FDLR ++DDV+SLFSSKS++K +ELAV++ D VP ++IGDP
Sbjct: 506 VLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPG 565
Query: 1832 RFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFN 1653
RFRQILTNL+GN++KFTE+GH+FV V L + L +++G+ TA+ +
Sbjct: 566 RFRQILTNLMGNSIKFTEKGHIFVTVHLVDE--------LFESIDGE------TASSPES 611
Query: 1652 TLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQ 1473
TLSG ADR+ SW+ F G S + + L +S+EDTGVGIP++
Sbjct: 612 TLSGLPVADRQRSWENF---------KAFSSNGHRSFEPSPPDINLIVSVEDTGVGIPVE 662
Query: 1472 AQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLK 1293
AQ R+FTPFMQ S SR +GGTGIGLSISKCL LM G+I F+S P VGSTFTF+A
Sbjct: 663 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFS 722
Query: 1292 HSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAV 1113
+ + + + + + F+GMKA++VD RP R+ V+ YH +RLGI ++VV +
Sbjct: 723 NGMQ--PAERKNDNNQPIFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQA 780
Query: 1112 VKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSE 933
+ + +++ IE + W E D + +++ + L K++LL S
Sbjct: 781 L------HYLKIGTTTVNMILIEQEIWNREAD----DFIKKLQKDPLFLSPKLILLANSV 830
Query: 932 ADKDK----YGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPS-FLRSLLVGK 768
G IV+ KP+RAS +A+++Q+ L + I E ++ P+ LR+LL+G+
Sbjct: 831 ESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALILRNLLLGR 890
Query: 767 NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGF 588
IL+VDDN VNLRVAA ALKKYGA+V C ESG AISLL+PPH FDACFMD+QMPEMDGF
Sbjct: 891 KILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGF 950
Query: 587 EATGQIRQMELKANEERKNKLASI-EGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGY 411
EAT +IR ME + N+ KN A I E +HLPVLAMTADVIQAT+EEC+K GMDGY
Sbjct: 951 EATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGMDGY 1010
Query: 410 VSKPFDEEQLYQAVSRLVVGTTDS 339
VSKPF+ EQLY+ VSR +D+
Sbjct: 1011 VSKPFEAEQLYREVSRFFNSPSDT 1034
>gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
Length = 1082
Score = 892 bits (2305), Expect = 0.0
Identities = 502/1012 (49%), Positives = 643/1012 (63%), Gaps = 57/1012 (5%)
Frame = -2
Query: 3215 WRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHA 3036
W A WV+ S + +R D ++R E L +MCE RARML+EQF ++NHV A
Sbjct: 75 WHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRRENLANMCEGRARMLEEQFKASMNHVRA 134
Query: 3035 IAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWV 2856
+ L++TF+ K P AI+Q+TFA Y RT+FERPL++GVAFA+RV H R++FES GW
Sbjct: 135 LTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAFAERVLHANRKLFESAHGWT 194
Query: 2855 MNTMQREPAPPQV-EYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFR 2679
+ M + EYAP SQ ++SYL +DMMSG+EDRENI RAR GK LT PFR
Sbjct: 195 IKEMYSKDLQQDFDEYAPTTMSQKSLSYLTSLDMMSGQEDRENIIRARELGKGALTKPFR 254
Query: 2678 LLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDI 2499
LL S HLGVV TFAVY DL DA E R++AT GYLGGAFDVE+LVENLL ++AG+Q I
Sbjct: 255 LLESKHLGVVFTFAVYCTDLHDDAKKEDRIKATAGYLGGAFDVETLVENLLRQMAGSQII 314
Query: 2498 VVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAI 2319
VNVYD+TN + +V+YG +++ E+ +VS LDFGDP R+HEMRCR+++ PW+AI
Sbjct: 315 AVNVYDITNETMPLVMYGHTNV-EKSKNTYVSSLDFGDPARRHEMRCRFKEDALPPWTAI 373
Query: 2318 TNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIR 2139
+ +G FVI L+G+ + A+ +R DKV E+CR +ELK +A+ A +AKSQFLAT SHEIR
Sbjct: 374 STSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAKSQFLATVSHEIR 433
Query: 2138 TPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVP 1959
TPMNGV Q DYA+TA G+ALI LIN+VLD+AKIE+G++ELE VP
Sbjct: 434 TPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEVLDQAKIESGRVELEHVP 493
Query: 1958 FDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE 1779
FDLR+++DDV+SLF +SR+ IELAV+V VPK+++GDP RFRQI+TNLVGN++KFTE
Sbjct: 494 FDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGRFRQIITNLVGNSIKFTE 553
Query: 1778 RGHVFVRVCLAENSNM-------EANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRR 1620
GH+FV V L E+ N EA+ L G + G + N FNTLSG E AD R
Sbjct: 554 AGHIFVCVHLNEDVNNLMDGDEGEADDTLDGEVESAGPLTD--MNYRFNTLSGRETADYR 611
Query: 1619 NSWQYFXXXXXXXXXXXXXXEGENSNQSD-SDRVTLAISIEDTGVGIPLQAQDRVFTPFM 1443
NSW+ F + + N D + V L IS+EDTGVGIPL QDRVF PFM
Sbjct: 612 NSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVISVEDTGVGIPLHVQDRVFMPFM 671
Query: 1442 QADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDI---- 1275
QADSSTSRNYGGTGIGLSIS+ L +LM G++ F SHP VGSTFTF+A L+ ++
Sbjct: 672 QADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTFTFTAELQRVPANVPEHI 731
Query: 1274 --SGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAF 1101
G + T L T F+GM+ ++VDGR VR VTR+HL+RLG+ ++V + +
Sbjct: 732 LREGRNCYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLQRLGLRVEVAHTPGEAAELL 791
Query: 1100 PG--QNGAAGSREK-------ASILFIESDFWRPETDVQLLNHLREQKNGQLSDGH---- 960
G GSR+ ++F++ D W P T V + L E GQLS
Sbjct: 792 TTTVDRGNRGSRDSQRSFATDIELIFVDKDAWGPGTWVNFRSLLTESFIGQLSHNQSGLT 851
Query: 959 ----------------------KVVLLVTS----EADKDKYGSIFDIVMCKPIRASTIAS 858
K+VL+ TS E K D V+ KP+RAS +A+
Sbjct: 852 SYQYRSAAGRLPNGYPTLNSMKKMVLVATSMNEMELSVVKASGFVDTVVRKPLRASLVAA 911
Query: 857 SIQQLLKVEIAERKDNQNRP---SFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVS 687
S++++L V R QN + L++LL GK ILVVDDN VN +VAA AL KYGA V
Sbjct: 912 SLEEILGVGDGGRDQGQNLQGGINSLQNLLTGKRILVVDDNPVNRKVAAGALNKYGAQVD 971
Query: 686 CVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
CV SG+ AI L+PPH +DACFMDVQMPEMDGFEAT IR+ E A + N A S
Sbjct: 972 CVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVD---NWQAGRFSS 1028
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVG 351
H+P+LAMTADVIQAT EEC++ GMDGYV+KPFDE LYQAV++ G
Sbjct: 1029 FGRRLHVPILAMTADVIQATSEECMRCGMDGYVAKPFDEHHLYQAVAKHFFG 1080
>gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
Length = 1041
Score = 884 bits (2285), Expect = 0.0
Identities = 490/981 (49%), Positives = 643/981 (65%), Gaps = 27/981 (2%)
Frame = -2
Query: 3227 TKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVN 3048
T +WW+ L +VL + S + W L DS R +E L SMC+ERARMLQ+QF V++N
Sbjct: 79 TGKWWKTLLVV-FVLAGIFGSMWLFWYLSEDSKLRRKETLASMCDERARMLQDQFNVSLN 137
Query: 3047 HVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQ 2868
HVHA+AIL+STF K P A+DQ TF YT +T+FERPL +GVA+A RV H ERE FE Q
Sbjct: 138 HVHALAILVSTFYHGKEPWALDQQTFEDYTEKTAFERPLTSGVAYALRVLHSEREKFEKQ 197
Query: 2867 QGWVMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDREN 2730
QGW++ M E PAP Q EYAPVIF+Q TVS++ IDMMSG+EDREN
Sbjct: 198 QGWIIRKMDTEVQTLGQDLVPEKLEPAPVQTEYAPVIFAQKTVSHIVSIDMMSGKEDREN 257
Query: 2729 IFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDV 2550
I RAR +GK VLT+PF+LL SNHLGVVLTFAVY DLP +A+ EQR+ AT+GYLG ++DV
Sbjct: 258 ILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPEATREQRINATVGYLGASYDV 317
Query: 2549 ESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKH 2370
SLVE LL +LA Q I VNVYD T+ S + +YG ++ D +P +S LDFGDP RKH
Sbjct: 318 PSLVEKLLHQLASKQTIAVNVYDTTDKSAPIKMYGDAANDTGLP--RISQLDFGDPSRKH 375
Query: 2369 EMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEA 2190
EM CR++QK P PW+AI +G VI +LLG+ AA +R KV D R+M LK +AEA
Sbjct: 376 EMHCRFKQKPPPPWTAIIASVGVLVITLLLGHIFHAAINRIAKVERDYREMMALKHRAEA 435
Query: 2189 ADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDV 2010
AD+AKSQFLAT SHEIRTPM GV Q DYA+TA G+ LI+LIN+V
Sbjct: 436 ADIAKSQFLATVSHEIRTPMVGVLGMLQMLMGTNLDVKQLDYAETAHASGKDLISLINEV 495
Query: 2009 LDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWR 1830
LD+AKIE+G+LELEAVPFDLR+ +D VVSL S KS EK IELAV+V D VP+VVIGDP R
Sbjct: 496 LDQAKIESGRLELEAVPFDLRADLDKVVSLLSGKSHEKDIELAVYVSDQVPEVVIGDPGR 555
Query: 1829 FRQILTNLVGNAVKFT-ERGHVFVRVCLAENSNME---ANQVLHGAMNGKGGRVESTANG 1662
FRQI+TNLVGN++KFT ++GH+FV V LA+ ++VL ++ ++ +
Sbjct: 556 FRQIITNLVGNSIKFTKDKGHIFVSVHLADEVKSPLDIKDEVLKQSLT----LIQDRSTA 611
Query: 1661 AFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGI 1482
+FNTLSGF DR SW+ F + +S ++ L +++EDTG GI
Sbjct: 612 SFNTLSGFPVVDRWRSWEKFKNL--------------SGMPEESKKIKLLVTVEDTGDGI 657
Query: 1481 PLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSA 1302
AQDR+FTPF+QADSSTSR YGGTGIGLSISK L +L+GG+I F S P GSTF+F+A
Sbjct: 658 VYDAQDRIFTPFVQADSSTSRKYGGTGIGLSISKRLVDLVGGEIGFVSEPGTGSTFSFTA 717
Query: 1301 TLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNM 1122
+ + I+G + + + F+G+KA++VD + +R+ VTRY LKRL + + + + +
Sbjct: 718 AFTKA-ETITGITKWEQYDLAVSEFRGLKALVVDEKSIRAEVTRYQLKRLEVSVDIASTV 776
Query: 1121 NAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQ----KNGQLSDGHKV 954
A ++ S E+ S++ I+ D W E + + L++ + K+
Sbjct: 777 EAAYSHLSADVNSSAS-ERVSMVLIDEDSWDNEIMARYVGCLKKSDQTASRPSMGMNPKI 835
Query: 953 VLLVTSEADKD----KYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLR 786
LL ++ D K + D V+ KP+R S + S +Q+ + R+ ++ PS +
Sbjct: 836 FLLANPKSFSDCIELKSTGLVDNVLTKPLRLSILISCLQESIGFG-RTRQVTRSNPSTIG 894
Query: 785 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQM 606
+LL GK +LVVDDN VN +VA AL+KYGA V+C SG+ A+ L+PPH FDACFMD+QM
Sbjct: 895 NLLKGKRMLVVDDNPVNRKVAELALRKYGAVVTCEASGEAALQRLKPPHDFDACFMDLQM 954
Query: 605 PEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY-HLPVLAMTADVIQATYEECIK 429
PEMDGFEAT +IR +E + NE K+ + ST Y H P+LAMTAD+IQAT E+C K
Sbjct: 955 PEMDGFEATQKIRHLEREYNENVKSGEIGTDKSTDEAYWHTPILAMTADLIQATNEKCRK 1014
Query: 428 SGMDGYVSKPFDEEQLYQAVS 366
GMDGYVSKPFD+EQLY AV+
Sbjct: 1015 CGMDGYVSKPFDDEQLYSAVA 1035
>dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 874 bits (2258), Expect = 0.0
Identities = 475/986 (48%), Positives = 646/986 (65%), Gaps = 26/986 (2%)
Frame = -2
Query: 3236 AARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGV 3057
+ + R W A VL + S + + D + R E L +MC+ERARMLQ+QF V
Sbjct: 232 STKISRKWSKRALLIGVLFGLCSSLCIFSCMYADVVARRIENLANMCDERARMLQDQFNV 291
Query: 3056 TVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMF 2877
++NHVHA+AIL+S+F+ K P AIDQ TF +TART+FERPL++GVA+A +V H+ER+ F
Sbjct: 292 SMNHVHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQF 351
Query: 2876 ESQQGWVMNTMQR--------------EPAPPQVEYAPVIFSQDTVSYLARIDMMSGEED 2739
E Q GW + M+ EP+P Q EYAPVIFSQ+TV ++ +DMMSG+ED
Sbjct: 352 EEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKED 411
Query: 2738 RENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGA 2559
+NI R+R+TGK LT+PF+LL SNHLGVVLTF VY+ DLP +A+ ++R+ AT+GYLG +
Sbjct: 412 HDNILRSRSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGAS 471
Query: 2558 FDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPF 2379
FDV SLV+ LL +LA + IVVN+YD TN + + +YG LH+S +DFGDP
Sbjct: 472 FDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGD--LHISSIDFGDPT 529
Query: 2378 RKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQ 2199
RKHEM CR++ + +PWSAI +I +L+G+ I A + +K D R M ELK Q
Sbjct: 530 RKHEMHCRFKHEPSLPWSAIIISTAVAIIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQ 589
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
AEAADVAKSQFLAT SHEIRTPMNGV TQ+D+ TAQ G+ LI LI
Sbjct: 590 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLI 649
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
N+VLD AKIE+G++ELEAVPFD+R ++D+V+SLF KS+ K IELAV V D VP V+IGD
Sbjct: 650 NEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGD 709
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGA 1659
PWRFRQI+TNLVGN++KFTE+GH+FV+V L + + + N + + + +S +
Sbjct: 710 PWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNREILYDSDNSML 769
Query: 1658 FNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIP 1479
+NTLSG E AD S + F +NSN ++D + LA+ +EDTG+GI
Sbjct: 770 WNTLSGLEVADSWRSLENFTMF-------------KNSN-GETDTIRLAVRVEDTGIGIT 815
Query: 1478 LQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSAT 1299
AQ R+FTPFMQADSSTSR YGGTGIGLSI+K L ELMGG+I FTS VGSTF+F+A
Sbjct: 816 KDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAI 875
Query: 1298 LKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMN 1119
K + + GD R +E P F+GM+A+++DGR R+ VT YHL+RLGI +V
Sbjct: 876 FKEN-RGCPGDMKRYYSEPTPLDFQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSE 934
Query: 1118 AVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGH------- 960
+ + S+ ++ ++++ W + + + + QL H
Sbjct: 935 SESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRF---VDCQLKGAHKFSQPMP 991
Query: 959 KVVLLVTS----EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSF 792
K +LL +S E+D + D + KP+R STI + +++ L V + R+ ++++
Sbjct: 992 KTILLGSSISPVESDYLRLTGFGDCIR-KPLRLSTIVACLRKTLGVGVT-RQQSRDQSLV 1049
Query: 791 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
L+S+L GK ILVVDDN VN +VAA +LKKYG+ V+CV+SG DAI +L+PPH FDACFMDV
Sbjct: 1050 LQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDV 1109
Query: 611 QMPEMDGFEATGQIRQMELKANEE-RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEEC 435
QMPEMDGFEAT IR +E K N+ ++++ A +H+P+LAMTADVIQAT+E+C
Sbjct: 1110 QMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATFEKC 1169
Query: 434 IKSGMDGYVSKPFDEEQLYQAVSRLV 357
++ GMDGYVSKPF+E+QLY AV+ +
Sbjct: 1170 MQCGMDGYVSKPFEEQQLYSAVAHFL 1195
>gb|AAF99730.1| F17L21.11 [Arabidopsis thaliana]
Length = 1092
Score = 872 bits (2254), Expect = 0.0
Identities = 489/992 (49%), Positives = 640/992 (64%), Gaps = 54/992 (5%)
Frame = -2
Query: 3224 KRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNH 3045
K WWR L WV+ V+ S W +M++ +E L SMC+ERARMLQ+QF V++NH
Sbjct: 89 KAWWRKLVVV-WVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNH 147
Query: 3044 VHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQ 2865
V A++ILISTF+ K P AIDQ TF++YT RTSFERPL +GVA+A RV H ERE FE QQ
Sbjct: 148 VQAMSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQ 207
Query: 2864 GWVMNTMQR----------------EPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRE 2733
GW + M EP+P Q EYAPVIF+QDTVS++ +DM+SG+EDRE
Sbjct: 208 GWTIRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRE 267
Query: 2732 NIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFD 2553
N+ RAR++GK VLT PF L+ +N LGV+LTFAVY+ DLP++A+ ++R+EAT GYLGG FD
Sbjct: 268 NVLRARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFD 327
Query: 2552 VESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRK 2373
+ESLVENLL +LA Q I+VNVYD+TN S + +YG + + + VS L FGDP RK
Sbjct: 328 IESLVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADGLE--RVSPLIFGDPLRK 385
Query: 2372 HEMRCRY--------------------------------RQKLPMPWSAITNPLGTFVIW 2289
HEMRCRY +QK P P ++ G VI
Sbjct: 386 HEMRCRYLQLAHTYVCNFFLFARIQVLTFCCELLPLCRFKQKPPWPVLSMVTSFGILVIA 445
Query: 2288 MLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXX 2109
+L+ + I A SR KV EDC KM++LK +AEAADVAKSQFLAT SHEIRTPMNGV
Sbjct: 446 LLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 505
Query: 2108 XXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV 1929
TQ+DY +TAQ G+AL++LIN+VLD+AKIE+GKLELE V FDLR ++DDV
Sbjct: 506 HMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDV 565
Query: 1928 VSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+SLFSSKS++K +ELAV++ D VP ++IGDP RFRQILTNL+GN++KFTE+GH+FV V L
Sbjct: 566 LSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHL 625
Query: 1748 AENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXX 1569
+ L +++G+ TA+ +TLSG ADR+ SW+ F
Sbjct: 626 VDE--------LFESIDGE------TASSPESTLSGLPVADRQRSWENF---------KA 662
Query: 1568 XXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLS 1389
G S + + L +S+EDTGVGIP++AQ R+FTPFMQ S SR +GGTGIGLS
Sbjct: 663 FSSNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLS 722
Query: 1388 ISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAI 1209
ISKCL LM G+I F+S P VGSTFTF+A + + + + + + F+GMKA+
Sbjct: 723 ISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQ--PAERKNDNNQPIFSEFRGMKAV 780
Query: 1208 LVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR 1029
+VD RP R+ V+ YH +RLGI ++VV + + + +++ IE + W
Sbjct: 781 VVDHRPARAKVSWYHFQRLGIRVEVVPRVEQAL------HYLKIGTTTVNMILIEQEIWN 834
Query: 1028 PETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDK----YGSIFDIVMCKPIRASTIA 861
E D + +++ + L K++LL S G IV+ KP+RAS +A
Sbjct: 835 READ----DFIKKLQKDPLFLSPKLILLANSVESSISEALCTGIDPPIVIVKPLRASMLA 890
Query: 860 SSIQQLLKVEIAERKDNQNRPS-FLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSC 684
+++Q+ L + I E ++ P+ LR+LL+G+ IL+VDDN VNLRVAA ALKKYGA+V C
Sbjct: 891 ATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVC 950
Query: 683 VESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASI-EGS 507
ESG AISLL+PPH FDACFMD+QMPEMDGFEAT +IR ME + N+ KN A I E
Sbjct: 951 AESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENG 1010
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGY 411
+HLPVLAMTADVIQAT+EEC+K GMDGY
Sbjct: 1011 NKTSWHLPVLAMTADVIQATHEECLKCGMDGY 1042
>ref|NP_568532.1| AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) [Arabidopsis thaliana]
dbj|BAB40774.1| histidine kinase [Arabidopsis thaliana]
Length = 1176
Score = 868 bits (2244), Expect = 0.0
Identities = 487/977 (49%), Positives = 638/977 (65%), Gaps = 24/977 (2%)
Frame = -2
Query: 3221 RWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHV 3042
RW + + G +L V S W + + + E L +MC+ERAR+LQ+QF V++NHV
Sbjct: 229 RWRKNILLLG-ILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHV 287
Query: 3041 HAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQG 2862
HA++IL+STF+ K P AIDQ TF +YT RT+FERPL +GVA+A +V H ERE FE + G
Sbjct: 288 HALSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHG 347
Query: 2861 WVMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIF 2724
W + M+ E PAP Q EYAPVIF+Q+TVS++ +DMMSGEEDRENI
Sbjct: 348 WAIKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENIL 407
Query: 2723 RARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVES 2544
RAR +GK VLT+PF+LL SNHLGVVLTFAVY LP DA+ EQRVEATIGYLG ++D+ S
Sbjct: 408 RARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPS 467
Query: 2543 LVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEM 2364
LVE LL +LA Q I V+VYD TN S + +YG D + H+S LDFGDP R HEM
Sbjct: 468 LVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGD--ISEQHISSLDFGDPSRNHEM 525
Query: 2363 RCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAAD 2184
CR++ KLP+PW+AIT + VI L+GY + A +R V EDC+KM ELK +AEAAD
Sbjct: 526 HCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAAD 585
Query: 2183 VAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLD 2004
+AKSQFLAT SHEIRTPMNGV Q DYAQTA G+ L +LIN+VLD
Sbjct: 586 IAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLD 645
Query: 2003 RAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFR 1824
+AKIE+G+LELE VPFD+R ++D+V SL S K+ EK IELAV+V VP VV+GDP RFR
Sbjct: 646 QAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFR 705
Query: 1823 QILTNLVGNAVKFT-ERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTL 1647
QI+TNLVGN++KFT ERGH+F+ V LA+ E + L R+ + + T+
Sbjct: 706 QIITNLVGNSIKFTQERGHIFISVHLAD----EVKEPLTIEDAVLKQRLALGCSESGETV 761
Query: 1646 SGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQ 1467
SGF A + SW+ F ++ +SD++ L +++EDTGVGIP+ AQ
Sbjct: 762 SGFPAVNAWGSWKNFKTCY-------------STESQNSDQIKLLVTVEDTGVGIPVDAQ 808
Query: 1466 DRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHS 1287
R+FTPFMQADSSTSR YGGTGIGLSISK L ELM G++ F S P +GSTF+F+ +
Sbjct: 809 GRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKA 868
Query: 1286 YKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVK 1107
+ S A+ F G++A+++D R +R+ VTRY L+RLGI +V+++
Sbjct: 869 ETNTSITKLERFDLAI-QEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACT 927
Query: 1106 AFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTS--- 936
E +++ I+ D W E + +L+ L + + K+ LL TS
Sbjct: 928 C------CISKLENLAMILIDKDAWNKE-EFSVLDELFTRSKVTFTRVPKIFLLATSATL 980
Query: 935 -EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNIL 759
E + K + D V+ KP+R S + +Q+ L V +R+ N+ R + L LL K IL
Sbjct: 981 TERSEMKSTGLIDEVVIKPLRMSVLICCLQETL-VNGKKRQPNRQRRN-LGHLLREKQIL 1038
Query: 758 VVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEAT 579
VVDDN VN RVA ALKKYGA V+CVESGK A+++L+PPH FDACFMD+QMPEMDGFEAT
Sbjct: 1039 VVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEAT 1098
Query: 578 GQIRQMELKANEERKNKLASIEGSTT-----AEYHLPVLAMTADVIQATYEECIKSGMDG 414
++R++E + N+ K+AS E S + +H+P+LAMTADVIQAT+EEC+K GMDG
Sbjct: 1099 RRVRELEREINK----KIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDG 1154
Query: 413 YVSKPFDEEQLYQAVSR 363
YVSKPF+EE LY AV+R
Sbjct: 1155 YVSKPFEEEVLYTAVAR 1171
>dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis thaliana]
Length = 1173
Score = 864 bits (2232), Expect = 0.0
Identities = 485/976 (49%), Positives = 636/976 (65%), Gaps = 23/976 (2%)
Frame = -2
Query: 3221 RWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHV 3042
RW + + G +L V S W + + + E L +MC+ERAR+LQ+QF V++NHV
Sbjct: 229 RWRKNILLLG-ILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHV 287
Query: 3041 HAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQG 2862
HA++IL+STF+ K P AIDQ TF +YT RT+FERPL +GVA+A +V H ERE FE + G
Sbjct: 288 HALSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHG 347
Query: 2861 WVMNTMQRE--------------PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIF 2724
W + M+ E PAP Q EYAPVIF+Q+TVS++ +DMMSGEEDRENI
Sbjct: 348 WAIKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENIL 407
Query: 2723 RARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVES 2544
RAR +GK VLT+PF+LL SNHLGVVLTFAVY LP DA+ EQRVEATIGYLG ++D+ S
Sbjct: 408 RARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPS 467
Query: 2543 LVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEM 2364
LVE LL +LA Q I V+VYD TN S + +YG D + H+S LDFGDP R HEM
Sbjct: 468 LVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGD--ISEQHISSLDFGDPSRNHEM 525
Query: 2363 RCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAAD 2184
CR++ KLP+PW+AIT + VI L+GY + A +R V EDC+KM ELK +AEAAD
Sbjct: 526 HCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAAD 585
Query: 2183 VAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLD 2004
+AKSQFLAT SHEIRTPMNGV Q DYAQTA G+ L +LIN+VLD
Sbjct: 586 IAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLD 645
Query: 2003 RAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFR 1824
+AKIE+G+LELE VPFD+R ++D+V SL S K+ EK IELAV+V VP VV+GDP RFR
Sbjct: 646 QAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFR 705
Query: 1823 QILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLS 1644
QI+TNLVGN++K ERGH+F+ V LA+ E + L R+ + + T+S
Sbjct: 706 QIITNLVGNSIK--ERGHIFISVHLAD----EVKEPLTIEDAVLKQRLALGCSESGETVS 759
Query: 1643 GFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQD 1464
GF A + SW+ F ++ +SD++ L +++EDTGVGIP+ AQ
Sbjct: 760 GFPAVNAWGSWKNFKTCY-------------STESQNSDQIKLLVTVEDTGVGIPVDAQG 806
Query: 1463 RVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSY 1284
R+FTPFMQADSSTSR YGGTGIGLSISK L ELM G++ F S P +GSTF+F+ +
Sbjct: 807 RIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAE 866
Query: 1283 KDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKA 1104
+ S A+ F G++A+++D R +R+ VTRY L+RLGI +V+++
Sbjct: 867 TNTSITKLERFDLAI-QEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACTC 925
Query: 1103 FPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTS---- 936
E +++ I+ D W E + +L+ L + + K+ LL TS
Sbjct: 926 ------CISKLENLAMILIDKDAWNKE-EFSVLDELFTRSKVTFTRVPKIFLLATSATLT 978
Query: 935 EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILV 756
E + K + D V+ KP+R S + +Q+ L V +R+ N+ R + L LL K ILV
Sbjct: 979 ERSEMKSTGLIDEVVIKPLRMSVLICCLQETL-VNGKKRQPNRQRRN-LGHLLREKQILV 1036
Query: 755 VDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATG 576
VDDN VN RVA ALKKYGA V+CVESGK A+++L+PPH FDACFMD+QMPEMDGFEAT
Sbjct: 1037 VDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEATR 1096
Query: 575 QIRQMELKANEERKNKLASIEGSTT-----AEYHLPVLAMTADVIQATYEECIKSGMDGY 411
++R++E + N+ K+AS E S + +H+P+LAMTADVIQAT+EEC+K GMDGY
Sbjct: 1097 RVRELEREINK----KIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDGY 1152
Query: 410 VSKPFDEEQLYQAVSR 363
VSKPF+EE LY AV+R
Sbjct: 1153 VSKPFEEEVLYTAVAR 1168
>ref|XP_463649.1| putative histidine kinase [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 849 bits (2193), Expect = 0.0
Identities = 487/987 (49%), Positives = 632/987 (64%), Gaps = 27/987 (2%)
Frame = -2
Query: 3242 YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQF 3063
+R R WW L W+L + S + + S+D+ + L SMC+ERARMLQ+QF
Sbjct: 73 WRVVRETWWWVLLL---WILAGSLGSFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQF 129
Query: 3062 GVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHERE 2883
V++NH+ A+AIL+STF+ K+P AIDQ TFA+Y RT+FERPL +GVA+A RV H ERE
Sbjct: 130 NVSMNHLQALAILVSTFHHSKTPSAIDQMTFARYAERTAFERPLTSGVAYAVRVTHGERE 189
Query: 2882 MFESQQGWVMNTM-------QREPAP------------PQVEYAPVIFSQDTVSYLARID 2760
FE QQGW + M Q P P P EYAPVIF+QD ++ D
Sbjct: 190 QFERQQGWAIKKMYSSSNKKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFD 249
Query: 2759 MMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEAT 2580
M+SG EDR+NI RAR +GK VLT PF+LL +N LGV+LT+ VY+ +LPA A +R++A
Sbjct: 250 MLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYARPHERIQAA 308
Query: 2579 IGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSM 2400
IGYLGG FD+++LVE LL +LA + I+VNVYD TN S + +YG D HVS+
Sbjct: 309 IGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNESP-ISMYGD---DTGSGMCHVSV 364
Query: 2399 LDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRK 2220
L+FGDP RKHEM CR+ +K P PW AIT+ GT VI +L G+ A R KV +D K
Sbjct: 365 LNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHK 424
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
M ELK +AE ADVAKSQFLAT SHEIRTPMNGV TQ+DY +TAQ G
Sbjct: 425 MSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASG 484
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
+AL++LIN+VLD+AKIE+GKLELE VPFDLR++ DD++SLF K++EK +ELAV+V D V
Sbjct: 485 KALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQV 544
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
P+++IGDP R RQI+TNLVGN++KFTERGH+++ V + E M +V G N
Sbjct: 545 PQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEV-MSCLEVETGIQN------ 597
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
NTLSG+ A+RR SW+ ++ SD ++L IS+E
Sbjct: 598 -------TNTLSGYPVANRRCSWE-----SIRLFNRELHSSEKSFAPIASDSISLVISVE 645
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
DTGVGIP +AQ RVFTPFMQ S +R +GGTGIGLSISKCL LM G+I F S P VGS
Sbjct: 646 DTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGS 705
Query: 1319 TFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILL 1140
TFTF+A L ++ G+ +S + FKG+ A++VD RPVR+ VT+YHL+RLG+
Sbjct: 706 TFTFTAVLMRAH--CKGNDIKS------SEFKGINALVVDHRPVRAKVTKYHLQRLGVKT 757
Query: 1139 QVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQ--LLNHLREQKNGQLSD 966
++ +N + +G+ A ++ I+ + W E+ L+N LR N D
Sbjct: 758 ELTAELNQFISKL--NSGSL----TAKLVLIDKETWLKESHCTPLLVNKLR---NNDKPD 808
Query: 965 GHKVVLLVTSEADKDKYGSIFD-----IVMCKPIRASTIASSIQQLL-KVEIAERKDNQN 804
K+ LL S A K GS V+ KP+RAS + S+++ L V+ ++
Sbjct: 809 SPKLFLL-GSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV 867
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 624
S L SLL K I+VVDDN VNL+VAA ALKKYGA V+C +SGK AI+LL+PPH FDAC
Sbjct: 868 GNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDAC 927
Query: 623 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATY 444
FMD+QMPEMDGFEAT +IR ME NE + A E ++ + P+LAMTADVIQAT+
Sbjct: 928 FMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVIQATH 987
Query: 443 EECIKSGMDGYVSKPFDEEQLYQAVSR 363
EEC+KS MDGYVSKPF+ EQLY V+R
Sbjct: 988 EECLKSEMDGYVSKPFEGEQLYSEVAR 1014
>gb|ABB76249.1| hybrid type histidine kinase [Oryza sativa (indica cultivar-group)]
Length = 1023
Score = 848 bits (2190), Expect = 0.0
Identities = 485/987 (49%), Positives = 632/987 (64%), Gaps = 27/987 (2%)
Frame = -2
Query: 3242 YRAARTKRWWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQF 3063
+R R WW L W+L + S + + S+D+ + L SMC+ERARMLQ+QF
Sbjct: 73 WRVVRETWWWVLLL---WILAGSLGSFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQF 129
Query: 3062 GVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHERE 2883
V++NH+ A+AIL+STF+ K+P AIDQ TFA+Y RT+FERPL +GVA+A RV H E+E
Sbjct: 130 NVSMNHLQALAILVSTFHHSKTPSAIDQMTFARYAERTAFERPLTSGVAYAVRVTHGEQE 189
Query: 2882 MFESQQGWVMNTM-------QREPAP------------PQVEYAPVIFSQDTVSYLARID 2760
FE QQGW + M Q P P P EYAPVIF+QD ++ D
Sbjct: 190 QFERQQGWAIKKMYSSSNKKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFD 249
Query: 2759 MMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEAT 2580
M+SG EDR+NI RAR +GK VLT PF+LL +N LGV+LT+ VY+ +LPA A +R++A
Sbjct: 250 MLSGNEDRDNILRARKSGKGVLTAPFKLL-NNRLGVILTYTVYKYELPAYARPHERIQAA 308
Query: 2579 IGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSM 2400
IGYLGG FD+++LVE LL +LA + I+VNVYD TN S + +YG D HVS+
Sbjct: 309 IGYLGGIFDIQALVEKLLKQLASQESIMVNVYDTTNESP-ISMYGD---DTGSGMCHVSV 364
Query: 2399 LDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRK 2220
L+FGDP RKHEM CR+ +K P PW AIT+ GT VI +L G+ A R KV +D K
Sbjct: 365 LNFGDPSRKHEMHCRFEKKPPWPWLAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHK 424
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
M ELK +AE ADVAKSQFLAT SHEIRTPMNGV TQ+DY +TAQ G
Sbjct: 425 MSELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASG 484
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
+AL++LIN+VLD+AKIE+GKLELE VPFDLR++ DD++SLF K++EK +ELAV+V D V
Sbjct: 485 KALVSLINEVLDQAKIESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQV 544
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
P+++IGDP R RQI+TNL+GN++KFTERGH+++ V + E M +V G N
Sbjct: 545 PQILIGDPGRVRQIITNLIGNSIKFTERGHIYLTVHVVEEV-MSCLEVETGIQN------ 597
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
NTLSG+ A+RR SW+ ++ SD ++L IS+E
Sbjct: 598 -------TNTLSGYPVANRRRSWE-----SIRLFNRELHSSEKSFAPIASDSISLVISVE 645
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
DTGVGIP +AQ RVFTPFMQ S +R +GGTGIGLSISKCL LM G+I F S P VGS
Sbjct: 646 DTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGS 705
Query: 1319 TFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILL 1140
TFTF+A L ++ G+ +S + FKG+ A++VD RPVR+ VT+YHL+RLG+
Sbjct: 706 TFTFTAVLMRAH--CKGNDIKS------SEFKGINALVVDHRPVRAKVTKYHLQRLGVKT 757
Query: 1139 QVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQ--LLNHLREQKNGQLSD 966
++ +N + +G+ A ++ I+ + W E+ L+N LR N D
Sbjct: 758 ELTAELNQFISKL--NSGSL----TAKLVLIDKETWLKESHCTPLLVNKLR---NNDKPD 808
Query: 965 GHKVVLLVTSEADKDKYGSIFD-----IVMCKPIRASTIASSIQQLL-KVEIAERKDNQN 804
K+ LL S A K GS V+ KP+RAS + S+++ L V+ ++
Sbjct: 809 SPKLFLL-GSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVV 867
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 624
S L SLL K I+VVDDN VNL+VAA ALKKYGA V+C +SGK AI+LL+PPH FDAC
Sbjct: 868 GNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDAC 927
Query: 623 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATY 444
FMD+QMPEMDGFEAT +IR ME NE + A E ++ + P+LAMTADVIQAT+
Sbjct: 928 FMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAMTADVIQATH 987
Query: 443 EECIKSGMDGYVSKPFDEEQLYQAVSR 363
EEC+KS MDGYVSKPF+ EQLY V+R
Sbjct: 988 EECLKSEMDGYVSKPFEGEQLYSEVAR 1014
>dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 824 bits (2129), Expect = 0.0
Identities = 465/969 (47%), Positives = 629/969 (64%), Gaps = 26/969 (2%)
Frame = -2
Query: 3191 WVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTF 3012
WV + V+ +++++ + ++ + E L SMC+ERARMLQ+QF V++NH+ A+AIL+STF
Sbjct: 73 WVSSWVLVASLIYLCMSYQAVGKRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTF 132
Query: 3011 NFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTM---- 2844
+ K+P AIDQ TFA+Y RT+FERPL +GVA+ RV H ERE FE QQGW + M
Sbjct: 133 HHSKTPSAIDQKTFARYAERTAFERPLTSGVAYGVRVTHAEREQFERQQGWSIKKMYSSK 192
Query: 2843 ------------QREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKA 2700
E P EYAPVIF+QD ++ D++SG +DR+N+ RAR +GK
Sbjct: 193 TKNQSQGPGNAEDAEVREPAEEYAPVIFAQDAYKHVISFDLLSGADDRDNVLRARESGKG 252
Query: 2699 VLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSK 2520
VLT PF+LL +N LGV+ T+AVY+ +LPA+A ++R++A IGYLGG FD+E+LV+ LL +
Sbjct: 253 VLTAPFKLL-NNRLGVIFTYAVYKYELPANARPQERIQAAIGYLGGIFDIEALVDKLLHQ 311
Query: 2519 LAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKL 2340
LAG Q I+VNVYD TN + +YG S D VS L+FGDP RKH M CR+ Q
Sbjct: 312 LAGKQSIMVNVYDTTNERP-ISMYG--SNDTGSGMCQVSTLNFGDPSRKHVMHCRFIQSP 368
Query: 2339 PMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLA 2160
P PW AIT +GT VI +L+GY + A R +V +D ++M LK +AE AD+AKSQFLA
Sbjct: 369 PWPWMAITTSIGTLVIALLIGYIVHATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLA 428
Query: 2159 TASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGK 1980
T SHEIRTPMNGV TQ+DY +TAQ G+ L++LIN+VLD+AKIE+GK
Sbjct: 429 TVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGK 488
Query: 1979 LELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVG 1800
LELE VPFDLR++ DD++SLF K++EK +ELAVFV D VP+ +IGDP R RQI+TNLVG
Sbjct: 489 LELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVG 548
Query: 1799 NAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRR 1620
N++KFTE+GH+++ V + E +++H G ++ T NTLSG+ A+R+
Sbjct: 549 NSIKFTEKGHIYLTVHVVE-------EIMHCLEVETG--IQYT-----NTLSGYPVANRK 594
Query: 1619 NSWQYFXXXXXXXXXXXXXXEGENSNQSD-----SDRVTLAISIEDTGVGIPLQAQDRVF 1455
SW+ F NS++ SD ++L IS+EDTG GIP AQ RVF
Sbjct: 595 RSWENFRLFSREL----------NSSEMPFAPIASDSISLMISVEDTGAGIPFDAQSRVF 644
Query: 1454 TPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDI 1275
TPFMQ S +R +GGTGIGLSISKCL LM G+I F S P VGSTFTF+A L +
Sbjct: 645 TPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPQVGSTFTFTAVLTRVH--- 701
Query: 1274 SGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPG 1095
SSR+ E + FK + A++VD RPVR+ VT+YHL+RLG+ ++ +++ +
Sbjct: 702 ---SSRN--ENKSSEFKEINALVVDHRPVRAKVTKYHLQRLGVQTELTTDLDQYI----- 751
Query: 1094 QNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKY 915
GS + A ++ I+ + W E+ L + + +N D K+ LL ++
Sbjct: 752 SKNNCGS-QIAKLVLIDKETWLKESHSMPL-LVTKLRNKDQPDSTKLFLLENPKSSVKSN 809
Query: 914 GSIFD----IVMCKPIRASTIASSIQQLL-KVEIAERKDNQNRPSFLRSLLVGKNILVVD 750
IF V+ KP+RAS + S+Q+ L ++ ++ S L SLL K I+VVD
Sbjct: 810 SHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLLHKKRIIVVD 869
Query: 749 DNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQI 570
DN VNL+VAA ALKKYGA V+C +SGK+AI+LL+PPH FDACFMD+QMPEMDGFEAT +I
Sbjct: 870 DNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEMDGFEATKRI 929
Query: 569 RQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDE 390
R ME NE+ + A E ++ P+LAMTADVIQAT+E+C+KS MDGYVSKPF+
Sbjct: 930 RVMERDLNEQIERGEAPPECVGVRQWRTPILAMTADVIQATHEQCLKSEMDGYVSKPFEG 989
Query: 389 EQLYQAVSR 363
EQLY+ V+R
Sbjct: 990 EQLYREVAR 998
>dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 806 bits (2083), Expect = 0.0
Identities = 437/899 (48%), Positives = 593/899 (65%), Gaps = 26/899 (2%)
Frame = -2
Query: 2975 TFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQR-------------- 2838
TF +TART+FERPL++GVA+A +V H+ER+ FE Q GW + M+
Sbjct: 167 TFEDFTARTTFERPLMSGVAYALKVLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLEKL 226
Query: 2837 EPAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHL 2658
EP+P Q EYAPVIFSQ+TV ++ +DMMSG+ED +NI R+R+TGK LT+PF+LL SNHL
Sbjct: 227 EPSPVQDEYAPVIFSQETVKHIISVDMMSGKEDHDNILRSRSTGKGALTSPFKLLKSNHL 286
Query: 2657 GVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDV 2478
GVVLTF VY+ DLP +A+ ++R+ AT+GYLG +FDV SLV+ LL +LA + IVVN+YD
Sbjct: 287 GVVLTFTVYKYDLPPNATPQERIHATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLYDT 346
Query: 2477 TNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTF 2298
TN + + +YG LH+S +DFGDP RKHEM CR++ + +PWSAI
Sbjct: 347 TNHTSPIEMYGSDFTPSGD--LHISSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVA 404
Query: 2297 VIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVX 2118
+I +L+G+ I A + +K D R M ELK QAEAADVAKSQFLAT SHEIRTPMNGV
Sbjct: 405 IIVLLVGHIIYATLNSLEKAEHDYRVMRELKGQAEAADVAKSQFLATVSHEIRTPMNGVL 464
Query: 2117 XXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLM 1938
TQ+D+ TAQ G+ LI LIN+VLD AKIE+G++ELEAVPFD+R ++
Sbjct: 465 GMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDIL 524
Query: 1937 DDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVR 1758
D+V+SLF KS+ K IELAV V D VP V+IGDPWRFRQI+TNLVGN++KFTE+GH+FV+
Sbjct: 525 DNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQ 584
Query: 1757 VCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXX 1578
V L + + + N + + + +S + +NTLSG E AD S + F
Sbjct: 585 VHLVKELSRKGNNFCDVSAHNREILYDSDNSMLWNTLSGLEVADSWRSLENFTMF----- 639
Query: 1577 XXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGI 1398
+NSN ++D + LA+ +EDTG+GI AQ R+FTPFMQADSSTSR YGGTGI
Sbjct: 640 --------KNSN-GETDTIRLAVRVEDTGIGITKDAQMRIFTPFMQADSSTSRTYGGTGI 690
Query: 1397 GLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGM 1218
GLSI+K L ELMGG+I FTS VGSTF+F+A K + + GD R +E P F+GM
Sbjct: 691 GLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKEN-RGCPGDMKRYYSEPTPLDFQGM 749
Query: 1217 KAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESD 1038
+A+++DGR R+ VT YHL+RLGI +V + + S+ ++ ++++
Sbjct: 750 RALIIDGRSARAEVTMYHLRRLGIQCSLVATSESESASSALMKACTSSKNNPDMVLVDTE 809
Query: 1037 FWRPETDVQLLNHLREQKNGQLSDGH-------KVVLLVTS----EADKDKYGSIFDIVM 891
W + + + + QL H K +LL +S E+D + D +
Sbjct: 810 AWGKGSGLAFYHRF---VDCQLKGAHKFSQPMPKTILLGSSISPVESDYLRLTGFGDCIR 866
Query: 890 CKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAAL 711
KP+R STI + +++ L V + R+ ++++ L+S+L GK ILVVDDN VN +VAA +L
Sbjct: 867 -KPLRLSTIVACLRKTLGVGVT-RQQSRDQSLVLQSVLTGKQILVVDDNAVNRKVAAGSL 924
Query: 710 KKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE-RK 534
KKYG+ V+CV+SG DAI +L+PPH FDACFMDVQMPEMDGFEAT IR +E K N+
Sbjct: 925 KKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGFEATRLIRSIEKKINDMIMM 984
Query: 533 NKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
++++ A +H+P+LAMTADVIQAT+E+C++ GMDGYVSKPF+E+QLY AV+ +
Sbjct: 985 GEISANNYGNKAHWHVPILAMTADVIQATFEKCMQCGMDGYVSKPFEEQQLYSAVAHFL 1043
>ref|NP_921024.1| putative histidine kinase [Oryza sativa (japonica cultivar-group)]
gb|AAM18726.1| putative histidine kinase [Oryza sativa (japonica cultivar-group)]
gb|AAP53311.1| histidine kinase, putative [Oryza sativa (japonica cultivar-group)]
Length = 925
Score = 796 bits (2057), Expect = 0.0
Identities = 447/894 (50%), Positives = 583/894 (65%), Gaps = 26/894 (2%)
Frame = -2
Query: 3146 LRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFA 2967
+ D + R E L +MC+ERARMLQ+QF V++NHVHA+AIL+STF+ K+P AIDQ TF
Sbjct: 1 MHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFE 60
Query: 2966 KYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQRE--------------PA 2829
+TART+FERPL++GVA+A +V H ERE+FE + GW + M+ E P+
Sbjct: 61 DFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPS 120
Query: 2828 PPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSNHLGVV 2649
P Q EYAPVIFSQ+TV ++ +DMMSG+EDR+NI R+R TGK LT PF LL SNHLGVV
Sbjct: 121 PVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVV 180
Query: 2648 LTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNA 2469
LTF VY+ DLP DA+ E+R+EAT+GYLG +FDV SLVE LL +LA Q IVV +YD+TN
Sbjct: 181 LTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNH 240
Query: 2468 SDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIW 2289
+ +Y + LH+S +DFGDP RKH M CR++ +PWSAI +I
Sbjct: 241 TYPTKMYDSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIV 298
Query: 2288 MLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXX 2109
+L+GY I A + ++ ++ M +LK +AEAADVAKSQFLAT SHEIRTPMNGV
Sbjct: 299 LLVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLGML 358
Query: 2108 XXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV 1929
TQ+D+ TAQ G++LI LIN+VLD AKIE+GK+ELEAV FD+R ++D+V
Sbjct: 359 QMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILDNV 418
Query: 1928 VSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
VSLFS KS K IELAV V D VP V+IGDPWRFRQI+TNLVGN++KFTE+GH+F+RV L
Sbjct: 419 VSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHL 478
Query: 1748 AENSNMEANQVLHGAMNGKGGRVESTANG----AFNTLSGFEAADRRNSWQYFXXXXXXX 1581
E E + + + +E TAN +NTLSG E A+ R + + F
Sbjct: 479 IE----EVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMF---- 530
Query: 1580 XXXXXXXEGENSNQSDS-DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGT 1404
+ SD+ D V L +++EDTG+GI AQ R+FTPFMQAD STSR YGGT
Sbjct: 531 -----------KDSSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGT 579
Query: 1403 GIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFK 1224
GIGLSI+K L ELMGG+I F S P V STF+F+A K + KD GD R E P F+
Sbjct: 580 GIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFKENRKD-PGDIKRYCPEPTPPDFQ 638
Query: 1223 GMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIE 1044
GM+A++VDGR R+ VT YHL+RLGI + + + A ++ + + +++ ++
Sbjct: 639 GMRALVVDGRCARAEVTMYHLRRLGIQCDLAATSESALSALL-ESCNSSVKSSLNMVLVD 697
Query: 1043 SDFWRPETDVQLLNHLREQK-NGQLSDGH---KVVLLVTS--EADKDKYG-SIFDIVMCK 885
+ W ++ + L + + G L K LL S AD D + + + K
Sbjct: 698 KEAWGEDSGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNSIRK 757
Query: 884 PIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKK 705
P+R ST+A+ + + L V + R+ N LRS+L GKNILVVDDN VN VAA ALKK
Sbjct: 758 PLRLSTVAACLSKALGVGLTGRRSRDN-SLVLRSVLTGKNILVVDDNAVNRIVAAGALKK 816
Query: 704 YGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANE 543
YGA V+CV+SGK+AIS LQPPH+FDACFMDVQMPEMDGFEAT +R +E K N+
Sbjct: 817 YGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKIND 870
>dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa (japonica cultivar-group)]
dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa (japonica cultivar-group)]
Length = 866
Score = 775 bits (2000), Expect = 0.0
Identities = 448/898 (49%), Positives = 576/898 (64%), Gaps = 27/898 (3%)
Frame = -2
Query: 2975 TFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTM-------QREPAP--- 2826
TFA+Y RT+FERPL +GVA+A RV H ERE FE QQGW + M Q P P
Sbjct: 2 TFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGPG 61
Query: 2825 ---------PQVEYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLL 2673
P EYAPVIF+QD ++ DM+SG EDR+NI RAR +GK VLT PF+LL
Sbjct: 62 DAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKLL 121
Query: 2672 GSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVV 2493
+N LGV+LT+ VY+ +LPA A +R++A IGYLGG FD+++LVE LL +LA + I+V
Sbjct: 122 -NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIMV 180
Query: 2492 NVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITN 2313
NVYD TN S + +YG D HVS+L+FGDP RKHEM CR+ +K P PW AIT+
Sbjct: 181 NVYDTTNESP-ISMYGD---DTGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITS 236
Query: 2312 PLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTP 2133
GT VI +L G+ A R KV +D KM ELK +AE ADVAKSQFLAT SHEIRTP
Sbjct: 237 SFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTP 296
Query: 2132 MNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFD 1953
MNGV TQ+DY +TAQ G+AL++LIN+VLD+AKIE+GKLELE VPFD
Sbjct: 297 MNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFD 356
Query: 1952 LRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERG 1773
LR++ DD++SLF K++EK +ELAV+V D VP+++IGDP R RQI+TNLVGN++KFTERG
Sbjct: 357 LRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERG 416
Query: 1772 HVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXX 1593
H+++ V + E M +V G N NTLSG+ A+RR SW+
Sbjct: 417 HIYLTVHVVEEV-MSCLEVETGIQN-------------TNTLSGYPVANRRCSWE----- 457
Query: 1592 XXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNY 1413
++ SD ++L IS+EDTGVGIP +AQ RVFTPFMQ S +R +
Sbjct: 458 SIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIH 517
Query: 1412 GGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPT 1233
GGTGIGLSISKCL LM G+I F S P VGSTFTF+A L ++ G+ +S +
Sbjct: 518 GGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLMRAH--CKGNDIKS------S 569
Query: 1232 AFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASIL 1053
FKG+ A++VD RPVR+ VT+YHL+RLG+ ++ +N + +G+ A ++
Sbjct: 570 EFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAELNQFISKL--NSGSL----TAKLV 623
Query: 1052 FIESDFWRPETDVQ--LLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFD-----IV 894
I+ + W E+ L+N LR N D K+ LL S A K GS V
Sbjct: 624 LIDKETWLKESHCTPLLVNKLR---NNDKPDSPKLFLL-GSSASSPKGGSDTSREHNLNV 679
Query: 893 MCKPIRASTIASSIQQLL-KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAA 717
+ KP+RAS + S+++ L V+ ++ S L SLL K I+VVDDN VNL+VAA
Sbjct: 680 IMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAG 739
Query: 716 ALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER 537
ALKKYGA V+C +SGK AI+LL+PPH FDACFMD+QMPEMDGFEAT +IR ME NE
Sbjct: 740 ALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERI 799
Query: 536 KNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ A E ++ + P+LAMTADVIQAT+EEC+KS MDGYVSKPF+ EQLY V+R
Sbjct: 800 ERGEAPPECASIQRWRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVAR 857
>gb|AAY32330.1| AHK1 [Phyllostachys praecox]
Length = 409
Score = 667 bits (1721), Expect = 0.0
Identities = 339/409 (82%), Positives = 359/409 (87%)
Frame = -2
Query: 2570 LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDF 2391
LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNA + MV+YGP S D +V LHVSMLD
Sbjct: 1 LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNALEPMVMYGPQSPDGKVLLLHVSMLDL 60
Query: 2390 GDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEE 2211
GDPFR+HEMRCRY QK PMPWSAITNPLGTFVIWML+GY I AA+SRYDKV+EDCRKMEE
Sbjct: 61 GDPFRRHEMRCRYWQKPPMPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEE 120
Query: 2210 LKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRAL 2031
LKTQAEAADVAKSQFLAT SHEIRTPMNGV TQKD+AQTAQMCGRAL
Sbjct: 121 LKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTLTQKDHAQTAQMCGRAL 180
Query: 2030 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKV 1851
ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV+SLFSSKSREKCIELAVFVCD+VP+V
Sbjct: 181 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPEV 240
Query: 1850 VIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVEST 1671
VIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSN+E +QVL+G +NGK G++EST
Sbjct: 241 VIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEDDQVLNGTLNGKDGKIEST 300
Query: 1670 ANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTG 1491
ANGA NTLSGF+AAD RNSW+YF EGE SNQ+DSD VTL ISIEDTG
Sbjct: 301 ANGALNTLSGFQAADERNSWEYFKLLLSDKESLLDELEGEKSNQNDSDSVTLMISIEDTG 360
Query: 1490 VGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
VGIPL AQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF
Sbjct: 361 VGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 409
>gb|AAP37766.1| At5g35750 [Arabidopsis thaliana]
gb|AAO00890.1| histidine kinase-like protein [Arabidopsis thaliana]
Length = 652
Score = 565 bits (1456), Expect = e-159
Identities = 325/678 (47%), Positives = 434/678 (64%), Gaps = 10/678 (1%)
Frame = -2
Query: 2366 MRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAA 2187
M CR++ KLP+PW+AIT + VI L+GY + A +R V EDC+KM ELK +AEAA
Sbjct: 1 MHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAA 60
Query: 2186 DVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVL 2007
D+AKSQFLAT SHEIRTPMNGV Q DYAQTA G+ L +LIN+VL
Sbjct: 61 DIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVL 120
Query: 2006 DRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRF 1827
D+AKIE+G+LELE VPFD+R ++D+V SL S K+ EK IELAV+V VP VV+GDP RF
Sbjct: 121 DQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRF 180
Query: 1826 RQILTNLVGNAVKFT-ERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNT 1650
RQI+TNLVGN++KFT ERGH+F+ V LA+ E + L R+ + + T
Sbjct: 181 RQIITNLVGNSIKFTQERGHIFISVHLAD----EVKEPLTIEDAVLKQRLALGCSESGET 236
Query: 1649 LSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQA 1470
+SGF A + SW+ F ++ +SD++ L +++EDTGVGIP+ A
Sbjct: 237 VSGFPAVNAWGSWKNFKTCY-------------STESQNSDQIKLLVTVEDTGVGIPVDA 283
Query: 1469 QDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKH 1290
Q R+FTPFMQADSSTSR YGGTGIGLSISK L ELM G++ F S P +GSTF+F+
Sbjct: 284 QGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGK 343
Query: 1289 SYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVV 1110
+ + S A+ F G++A+++D R +R+ VTRY L+RLGI +V+++
Sbjct: 344 AETNTSITKLERFDLAI-QEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMAC 402
Query: 1109 KAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTS-- 936
E +++ I+ D W E + +L+ L + + K+ LL TS
Sbjct: 403 TC------CISKLENLAMILIDKDAWNKE-EFSVLDELFTRSKVTFTRVPKIFLLATSAT 455
Query: 935 --EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNI 762
E + K + D V+ KP+R S + +Q+ L V +R+ N+ R + L LL K I
Sbjct: 456 LTERSEMKSTGLIDEVVIKPLRMSVLICCLQETL-VNGKKRQPNRQRRN-LGHLLREKQI 513
Query: 761 LVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEA 582
LVVDDN VN RVA ALKKYGA V+CVESGK A+++L+PPH FDACFMD+QMPEMDGFEA
Sbjct: 514 LVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEA 573
Query: 581 TGQIRQMELKANEERKNKLASIEGSTT-----AEYHLPVLAMTADVIQATYEECIKSGMD 417
T ++R++E + N+ K+AS E S + +H+P+LAMTADVIQAT+EEC+K GMD
Sbjct: 574 TRRVRELEREINK----KIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMD 629
Query: 416 GYVSKPFDEEQLYQAVSR 363
GYVSKPF+EE LY AV+R
Sbjct: 630 GYVSKPFEEEVLYTAVAR 647
>gb|AAO59549.1| histidine kinase [Oryza sativa (indica cultivar-group)]
Length = 497
Score = 405 bits (1042), Expect = e-111
Identities = 247/524 (47%), Positives = 324/524 (61%), Gaps = 8/524 (1%)
Frame = -2
Query: 1910 KSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM 1731
K++EK +ELAV+V D VP+++IGDP R RQI+TNLVGN++KFTERGH+++ V + E M
Sbjct: 2 KAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEV-M 60
Query: 1730 EANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGE 1551
+V G N NTLSG+ A+RR SW+
Sbjct: 61 SCLEVETGIQNT-------------NTLSGYPVANRRRSWESIRLFNRELHSSEKSFA-- 105
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
SD ++L IS+EDTGVGIP +AQ RVFTPFMQ S +R +GGTGIGLSISKCL
Sbjct: 106 ---PIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLV 162
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
LM G+I F S P VGSTFTF+A L ++ G+ +S + FKG+ A++VD RP
Sbjct: 163 GLMKGEIGFASKPHVGSTFTFTAVLMRAH--CKGNDIKS------SEFKGINALVVDHRP 214
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQ 1011
VR+ VT+YHL+RLG+ ++ +N + +GS A ++ I+ + W E+
Sbjct: 215 VRAKVTKYHLQRLGVKTELTAELNQFISKLN-----SGSLT-AKLVLIDKETWLKESHCT 268
Query: 1010 --LLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-----VMCKPIRASTIASSI 852
L+N LR N D K+ LL +S A K GS V+ KP+RAS + S+
Sbjct: 269 PLLVNKLR---NNDKPDSPKLFLLGSS-ASSPKGGSDTSREHNLNVIMKPLRASMLQVSL 324
Query: 851 QQLLK-VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
++ L V+ ++ S L SLL K I+VVDDN VNL+VAA ALKKYGA V+C +S
Sbjct: 325 RRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADS 384
Query: 674 GKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE 495
GK AI+LL+PPH FDACFMD+QMPEMDGFEAT +IR ME NE + A E ++
Sbjct: 385 GKKAITLLKPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQR 444
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ P+LAMTADVIQAT+EEC+KS MDGYVSKPF+ EQLY V+R
Sbjct: 445 WRTPILAMTADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVAR 488
>gb|AAO59548.1| histidine kinase [Oryza sativa (indica cultivar-group)]
Length = 488
Score = 397 bits (1021), Expect = e-108
Identities = 243/516 (47%), Positives = 317/516 (61%), Gaps = 8/516 (1%)
Frame = -2
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
LAV+V D VP+++IGDP R RQI+TNLVGN++KFTERGH+++ V + E M +V G
Sbjct: 1 LAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEV-MSCLEVETG 59
Query: 1706 AMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSD 1527
N NTLSG+ A+RR SW+ SD
Sbjct: 60 IQNT-------------NTLSGYPVANRRRSWESIRLFNRELHSSEKSFA-----PIASD 101
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
++L IS+EDTGVGIP +AQ RVFTPFMQ S +R +GGTGIGLSISKCL LM G+I
Sbjct: 102 SISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIG 161
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRY 1167
F S P VGSTFTF+A L ++ G+ +S + FKG+ A++VD RPVR+ VT+Y
Sbjct: 162 FASKPHVGSTFTFTAVLMRAH--CKGNDIKS------SEFKGINALVVDHRPVRAKVTKY 213
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQ--LLNHLR 993
HL+RLG+ ++ +N + +GS A ++ I+ + W E+ L+N LR
Sbjct: 214 HLQRLGVKTELTAELNQFISKLN-----SGSLT-AKLVLIDKETWLKESHCTPLLVNKLR 267
Query: 992 EQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-----VMCKPIRASTIASSIQQLLK-VE 831
N D K+ LL +S A K GS V+ KP+RAS + S+++ L V+
Sbjct: 268 ---NNDKPDSPKLFLLGSS-ASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVD 323
Query: 830 IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL 651
++ S L SLL K I+VVDDN VNL+VAA ALKKYGA V+C +SGK AI+LL
Sbjct: 324 KVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLL 383
Query: 650 QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
+PPH FDACFMD+QMPEMDGFEAT +IR ME NE + A E ++ + P+LAM
Sbjct: 384 KPPHNFDACFMDIQMPEMDGFEATRRIRVMERDLNERIERGEAPPECASIQRWRTPILAM 443
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
TADVIQAT+EEC+KS MDGYVSKPF+ EQLY V+R
Sbjct: 444 TADVIQATHEECLKSEMDGYVSKPFEGEQLYSEVAR 479
>gb|AAK13126.1| Histidine-kinase like protein [Oryza sativa (japonica
cultivar-group)]
Length = 627
Score = 381 bits (979), Expect = e-104
Identities = 228/495 (46%), Positives = 305/495 (61%), Gaps = 13/495 (2%)
Frame = -2
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
+AV V D VP V+IGDPWRFRQI+TNLVGN++KFTE+GH+F+RV L E E + +
Sbjct: 1 MAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIE----EVKRKMEA 56
Query: 1706 AMNGKGGRVESTANGA----FNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQ 1539
+ +E TAN +NTLSG E A+ R + + F +
Sbjct: 57 LDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMF---------------KDS 101
Query: 1538 SDS-DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
SD+ D V L +++EDTG+GI AQ R+FTPFMQAD STSR YGGTGIGLSI+K L ELM
Sbjct: 102 SDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELM 161
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG+I F S P V STF+F+A K + KD GD R E P F+GM+A++VDGR R+
Sbjct: 162 GGEIGFVSKPGVSSTFSFTAIFKENRKD-PGDIKRYCPEPTPPDFQGMRALVVDGRCARA 220
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
VT YHL+RLGI + + + A ++ + + +++ ++ + W ++ +
Sbjct: 221 EVTMYHLRRLGIQCDLAATSESALSALL-ESCNSSVKSSLNMVLVDKEAWGEDSGLAFFR 279
Query: 1001 HLREQK-NGQLSDGH---KVVLLVTS--EADKDKYGSI-FDIVMCKPIRASTIASSIQQL 843
L + + G L K LL S AD D + + KP+R ST+A+ + +
Sbjct: 280 CLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYSNSIRKPLRLSTVAACLSKA 339
Query: 842 LKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
L V + R+ N LRS+L GKNILVVDDN VN VAA ALKKYGA V+CV+SGK+A
Sbjct: 340 LGVGLTGRRSRDNS-LVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEA 398
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE-RKNKLASIEGSTTAEYHL 486
IS LQPPH+FDACFMDVQMPEMDGFEAT +R +E K N+ + +++S A +H+
Sbjct: 399 ISRLQPPHKFDACFMDVQMPEMDGFEATRLVRSVESKINDTIQAGEVSSEIYGNKAHWHV 458
Query: 485 PVLAMTADVIQATYE 441
P+LAMTADVIQAT+E
Sbjct: 459 PILAMTADVIQATFE 473
>gb|AAS78641.1| putative cytokinin receptor [Oryza sativa]
gb|ABA98351.1| cytokinin receptor, putative [Oryza sativa (japonica cultivar-group)]
Length = 948
Score = 303 bits (775), Expect = 4e-80
Identities = 167/349 (47%), Positives = 224/349 (64%), Gaps = 4/349 (1%)
Frame = -2
Query: 3191 WVLTAVVCSAVMHWTL---RRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILI 3021
WV + CS W L R + + L MC+ERAR+LQ+Q V++NH+ A+AIL+
Sbjct: 6 WVFS---CSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILV 62
Query: 3020 STFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNTMQ 2841
STF+ KSP AIDQ TFA+Y RT+FERPL +G+A+A RV H ERE+FE QQ W + M
Sbjct: 63 STFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMN 122
Query: 2840 REPAPPQV-EYAPVIFSQDTVSYLARIDMMSGEEDRENIFRARTTGKAVLTNPFRLLGSN 2664
P+ EYAPVIF+QD ++ IDM+SG EDR N+ RAR +GK VLT PF+LL +
Sbjct: 123 FSSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLTAPFQLL-NK 181
Query: 2663 HLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVY 2484
+GVVLT+AVY+ +LP +A+V R++++IGYLGG FD+E V+ LL KLAG + + VN+Y
Sbjct: 182 RIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNIY 241
Query: 2483 DVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLG 2304
D T S + +YG SS + HVS LDFGDP RKHEM CR+ Q P PW A+ + G
Sbjct: 242 DTTGES-MIRMYG-SSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPWLAVASSYG 299
Query: 2303 TFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLAT 2157
T VI +L+GY I ++ ED K +++ AK +F AT
Sbjct: 300 TLVISLLVGY-IFHFTDKWIAKVEDGYKATDMQMP------AKDEFAAT 341
>ref|ZP_00600877.1| PAS [Rubrobacter xylanophilus DSM 9941]
gb|EAN36092.1| PAS [Rubrobacter xylanophilus DSM 9941]
Length = 1063
Score = 295 bits (756), Expect = 7e-78
Identities = 226/723 (31%), Positives = 333/723 (46%), Gaps = 55/723 (7%)
Frame = -2
Query: 2240 VTEDCRKMEEL---KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+TE R EEL K QAEAA AKS+F+A SHEIRTPMNGV Q+
Sbjct: 305 ITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQR 364
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
+YA+T + G AL+ ++ND+LD +KIEAG+L LE +PF++ +++VVSL + ++ K +
Sbjct: 365 EYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGL 424
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLA-ENSNMEANQVL 1713
EL F+ VP ++ GDP+R RQ+LTNL+GNA+KFTE G V V V L+ E + A +
Sbjct: 425 ELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSLSKEEKSAPAGE-- 482
Query: 1712 HGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSD 1533
+GG +E
Sbjct: 483 ------RGGEIE------------------------------------------------ 488
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
L ++D+G+GI + Q +F F QAD+ST+R YGGTG+GL+IS+ L E+MGG+
Sbjct: 489 -----LRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGE 543
Query: 1352 ISFTSHPSVGSTFTFSATL-----------KHSYKDISGDSSRSLTE----ALPTAFKGM 1218
I S P GSTF FSA K ++ G +R E + G+
Sbjct: 544 IGLKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEGEGGGARRTREEEERGRRESLAGL 603
Query: 1217 KAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESD 1038
+ ++VD + L+ + + V ++ S L I D
Sbjct: 604 RVLVVDDNATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLASSSSGYDLVI-LD 662
Query: 1037 FWRPETD-VQLLNHLR------EQKNGQLSDGHKVVLLVTSE---ADKDKYGSIFDIVMC 888
PETD ++L ++ E+K G +++LL + + +K K + +
Sbjct: 663 MQMPETDGLELARRIKSRLQEEEEKRGGAFSALRLMLLTSMDPQTKEKIKASGTVEACLQ 722
Query: 887 KPIRASTIASSIQQLLKVEIAERKDNQNRPSFL-----RSLLVGKN---ILVVDDNKVNL 732
KP+R S + +I L ++K + RP L GK IL+ +DN VN
Sbjct: 723 KPVRQSQLYDAIATLF-----QKKKEEERPLPLPAHQKEEEKEGKERPLILLAEDNPVNQ 777
Query: 731 RVAAAALKKYGANVSCVESGKDAISLLQPP------------------HRFDACFMDVQM 606
+VAA+ LKK G V ++G++A+ L PP ++ A MD+QM
Sbjct: 778 QVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKKKYAAVLMDIQM 837
Query: 605 PEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKS 426
P+MDG EAT +IR E EE +L P++AM+A +Q E +K+
Sbjct: 838 PKMDGLEATRRIRSKE----EEGVLRLP----------RTPIIAMSAHAMQEDRERALKA 883
Query: 425 GMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV*CSKYDGPDFSFINRSEASPSCLCPADSI 246
GMD Y+SKP +EQL +A+ R V T + SPS CP
Sbjct: 884 GMDHYISKPVKKEQLKEALERFVAATEG----------------QKERPSPSSSCPPGRK 927
Query: 245 P*Q 237
P Q
Sbjct: 928 PQQ 930
>ref|ZP_00601697.1| PAS [Rubrobacter xylanophilus DSM 9941]
gb|EAN35240.1| PAS [Rubrobacter xylanophilus DSM 9941]
Length = 1375
Score = 277 bits (709), Expect = 2e-72
Identities = 212/712 (29%), Positives = 326/712 (45%), Gaps = 62/712 (8%)
Frame = -2
Query: 2297 VIWMLLGYSIAAA--------YSRYDKVTEDCRKMEEL---KTQAEAADVAKSQFLATAS 2151
++W+LL S+ ++ +TE R EEL K QAEAA AKS+F+A S
Sbjct: 582 IVWVLLSVSLVTGENDEPLYVIAQVQDITERKRIEEELREAKEQAEAASRAKSEFVANMS 641
Query: 2150 HEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLEL 1971
HEIRTPMNGV Q++YA+T + G AL+ ++ND+LD +KIEAG+L L
Sbjct: 642 HEIRTPMNGVIGMAELLLDTPLTPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSL 701
Query: 1970 EAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAV 1791
E +PF++ +++VVSL + ++ K +EL F+ VP ++ GDP+R RQ+LTNL+
Sbjct: 702 ERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLI---- 757
Query: 1790 KFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSW 1611
G ++ T G + +++ S
Sbjct: 758 ---------------------------------GNAIKFTEEGEVVVSASLSKEEKKKS- 783
Query: 1610 QYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADS 1431
GE + + L ++D+G+GI + Q +F F QAD+
Sbjct: 784 ---------------APAGERGGE-----IELRFEVKDSGIGIQEEQQKHLFEAFSQADA 823
Query: 1430 STSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATL-----------KHSY 1284
ST+R YGGTG+GL+IS+ L E+MGG+I S P GSTF FSA K
Sbjct: 824 STTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPEEEEEKSPKTPP 883
Query: 1283 KDISGDSSRSLTE----ALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNA 1116
++ G +R E + G++ ++VD + L+ + + V
Sbjct: 884 EEGEGGGARRTREEEERGRRESLAGLRVLVVDDNATNRTILCRQLEAWRMEPKSVGGAQE 943
Query: 1115 VVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLR------EQKNGQLSDGHK 957
++ S L I D PETD ++L ++ E+K G +
Sbjct: 944 AIRELEASGTFLASSSSGYDLVI-LDMQMPETDGLELARRIKSRLQEEEEKRGGAFSALR 1002
Query: 956 VVLLVTSE---ADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFL- 789
++LL + + +K K + + KP+R S + +I L ++K + RP L
Sbjct: 1003 LMLLTSMDPQTKEKIKASGTVEACLQKPVRQSQLYDAIATLF-----QKKKEEERPLPLP 1057
Query: 788 ----RSLLVGKN---ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP---- 642
GK IL+ +DN VN +VAA+ LKK G V ++G++A+ L PP
Sbjct: 1058 AHQKEEEKEGKERPLILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSP 1117
Query: 641 --------------HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGST 504
++ A MD+QMP+MDG EAT +IR E EE +L
Sbjct: 1118 PSSSGREEGGGSPKKKYAAVLMDIQMPKMDGLEATRRIRSKE----EEGVLRLP------ 1167
Query: 503 TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
P++AM+A +Q E +K+GMD Y+SKP +EQL +A+ R V T
Sbjct: 1168 ----RTPIIAMSAHAMQEDRERALKAGMDHYISKPVKKEQLKEALERFVAAT 1215
>gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
Length = 1248
Score = 257 bits (656), Expect = 3e-66
Identities = 199/623 (31%), Positives = 286/623 (45%), Gaps = 7/623 (1%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
+++ + AEAA AKSQF+A SHEIRTPMNG+ Q+ +AQ
Sbjct: 664 ELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGMTELLLGTPLNDKQRRFAQAVYRS 723
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G +L+ +IND+LD AKIEAG+LEL F LR+L++D + L + ++ EK +EL+
Sbjct: 724 GESLLEIINDILDFAKIEAGRLELATCDFVLRTLVEDTLELMAPRAHEKGLELSFREQPG 783
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
+P V+ GDP R RQILTNLV NA+KFTE G + V + A GG
Sbjct: 784 LPSVIHGDPLRLRQILTNLVANAIKFTEHGEIVVDIRRAI-----------------GGA 826
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISI 1503
VE G+ T+ L +
Sbjct: 827 VELPKPGSLETME------------------------------------------LEFMV 844
Query: 1502 EDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVG 1323
DTG+GIP + R+F+ F+QA+ +R YGGTG+GL+ISK L ELMGGQI S P VG
Sbjct: 845 RDTGIGIPAEVVPRLFSAFVQANGGMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVG 904
Query: 1322 STFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI- 1146
S F F + G + + ++VD V L G+
Sbjct: 905 SEFLFRVPV------CIGTTQADMAMLEEPDMPSFNVLVVDDNDTNRTVIENMLTAWGMH 958
Query: 1145 LLQVVNNMNA--VVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQ 975
++Q ++ A V+ A P Q+ A D P D + L +R
Sbjct: 959 VVQAIDGREALNVLMAHPSQD--------APFDLALVDMNMPNLDGMGLAEAVRTSGRYP 1010
Query: 974 LSDGHKVVLL--VTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
L K++LL V+S D + + F + KP+R + + +I + AER DN
Sbjct: 1011 LL---KMILLSSVSSPDDVRRAQDVGFQRFVAKPLRKAELRQAILGI----SAERGDNAQ 1063
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 624
+ + K +LV++DN VN V + LK+ G V S + + L RFD
Sbjct: 1064 -----EARRINKAVLVIEDNTVNQEVCSQMLKRLGCEVRVASSALEGLRRL-GEQRFDLI 1117
Query: 623 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATY 444
MD+QMP MDG EA G R+ N+ + I S T PV+A+TA+ ++
Sbjct: 1118 LMDIQMPGMDGVEALGWFRR-------GSNNRFSFITPSDT-----PVIAVTANALEGDE 1165
Query: 443 EECIKSGMDGYVSKPFDEEQLYQ 375
E + G D Y+SKPF + QL++
Sbjct: 1166 ERFLGLGFDDYLSKPFRQSQLHK 1188
>ref|ZP_00674598.1| PAS [Trichodesmium erythraeum IMS101]
gb|EAO26705.1| PAS [Trichodesmium erythraeum IMS101]
Length = 1384
Score = 247 bits (631), Expect = 2e-63
Identities = 188/659 (28%), Positives = 300/659 (45%), Gaps = 32/659 (4%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
K D + + + +A AA AKS+FLAT SHEIRTP+N V Q ++
Sbjct: 646 KTATDATDLAKARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSLKSDQTEF 705
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+T + G AL+TLIND+LD +KIE+ K +LE PFDL + +++ + L +K E+ +EL
Sbjct: 706 VETIRSSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLEL 765
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
F+ P +VIGD R RQIL NL+ NAVKFT G V V V
Sbjct: 766 VYFIDPETPTIVIGDVTRVRQILVNLLSNAVKFTSDGEVLVSV----------------- 808
Query: 1703 MNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDR 1524
G ++E N + +D + W +
Sbjct: 809 ---SGRKLEIEENVQNLAVENISESDTCDIWPAYE------------------------- 840
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI-- 1350
+ S++DTG+GIP +R+F F Q DSST+R YGGTG+GL ISK LAE+MGGQ+
Sbjct: 841 --IQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLAEMMGGQMWV 898
Query: 1349 ----------------------SFTSHPSVGSTFTFSATLKHSYKDISGD-SSRSLTEAL 1239
S + GSTF F+ K S + + +
Sbjct: 899 ESMGVVGGNPPATYRLPDLYEHSAAVNEKSGSTFYFTIVSKCSIQTVQNKFIQTNYVNGS 958
Query: 1238 PTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS 1059
+ ++VD + + G++++ N N ++ +N K
Sbjct: 959 QHKLVDKRILIVDDNSTNRTILLRQTESWGMIVRTAENANRALELIATEN-------KFD 1011
Query: 1058 ILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG-SIFDIVMCKP 882
+ I D PE D L ++ + ++LL + + + + V+ KP
Sbjct: 1012 VAII--DMKMPEIDGLSLG--KKITEYPIYQNLPIILLSSLGQQEINFSDKLLGSVINKP 1067
Query: 881 IRASTIASSIQQLLK-VEIAERKDNQNRPSFLRSLLVGK----NILVVDDNKVNLRVAAA 717
I+ S + ++ + ++ + N N+ ++ ++ K IL+ DD+ VN +VA
Sbjct: 1068 IKQSQLYEALLNIFSGQDVKVKFKNNNKRNYQTIPVLAKELPLRILLADDHLVNQKVALR 1127
Query: 716 ALKKYGANVSCVESGKDAI-SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
L++ G +G + + ++ + P +D MDVQMP MDG EA+ I +
Sbjct: 1128 ILQRMGYRADLASNGLEVLAAVFRLP--YDVVLMDVQMPLMDGLEASRHI---------Q 1176
Query: 539 RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
R+ + A+ + + ++AMTA+V+Q EECI +GMD Y+SKP E+L +A+S+
Sbjct: 1177 REYENATKYSQKSPQKRPRIIAMTANVMQGYREECIAAGMDDYISKPIQIEELIKALSK 1235
Score = 56.6 bits (135), Expect = 7e-06
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 1/197 (0%)
Frame = -2
Query: 938 SEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNIL 759
S A +K GS F + T+ + Q V ++ K LV K IL
Sbjct: 921 SAAVNEKSGSTFYFTIVSKCSIQTVQNKFIQTNYVNGSQHK------------LVDKRIL 968
Query: 758 VVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEAT 579
+VDDN N + + +G V E+ A+ L+ ++FD +D++MPE+DG
Sbjct: 969 IVDDNSTNRTILLRQTESWGMIVRTAENANRALELIATENKFDVAIIDMKMPEIDGLSLG 1028
Query: 578 GQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTA-DVIQATYEECIKSGMDGYVSK 402
+I + + N LP++ +++ + + + + + ++K
Sbjct: 1029 KKITEYPIYQN-------------------LPIILLSSLGQQEINFSDKL---LGSVINK 1066
Query: 401 PFDEEQLYQAVSRLVVG 351
P + QLY+A+ + G
Sbjct: 1067 PIKQSQLYEALLNIFSG 1083
>ref|ZP_00244380.1| COG0642: Signal transduction histidine kinase [Rubrivivax gelatinosus
PM1]
Length = 1001
Score = 247 bits (630), Expect = 3e-63
Identities = 194/621 (31%), Positives = 284/621 (45%), Gaps = 3/621 (0%)
Frame = -2
Query: 2216 EELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGR 2037
+ L QAE A AKSQF+AT SHEIRTPMNGV Q+ +AQ G
Sbjct: 326 QALALQAETASQAKSQFMATMSHEIRTPMNGVLGMTELLLGTALDSRQRRFAQAVYRSGE 385
Query: 2036 ALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVP 1857
+L+ +IND+LD +KIEAGKLEL F R+L++DV+ L + +++E+ +EL+ +P
Sbjct: 386 SLLEIINDILDFSKIEAGKLELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLP 445
Query: 1856 KVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVE 1677
+ GD R RQ+LTNLV NA+KFTE HG + + RVE
Sbjct: 446 PALHGDALRLRQVLTNLVANAIKFTE----------------------HGEVVVEMRRVE 483
Query: 1676 STANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIED 1497
TA + + DR+ + + + D
Sbjct: 484 PTA--------------------------------------AETALATGDRLWVELCVRD 505
Query: 1496 TGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGST 1317
TG+GIP +A R+F F QA S +R YGGTG+GL+IS+ L ELM G I+ S P VGS
Sbjct: 506 TGIGIPPEALSRLFIAFSQASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQPGVGSR 565
Query: 1316 FTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQ 1137
F L + D+ D +P ++ ++VD V L G+ +
Sbjct: 566 FCVRLPLSPASSDVDVDMLE--LHDMP----ALRVLVVDDNETNRTVLENLLGAWGMEVV 619
Query: 1136 VVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQLSDGH 960
V N+ ++ + AA S + A I D P D +QL + + + + +D
Sbjct: 620 VANDGVHALERLHAERDAARSFDIALI-----DMQMPRLDGLQLADRISAEPD--FADVK 672
Query: 959 KVVLLVTSEADKDKYGSI--FDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLR 786
++L S D K F + KP+R + + +I + V A ++
Sbjct: 673 LIMLSSVSSPDDAKRAQAVGFKRFVNKPVRKAELRQAILGVSGVAGAGGGSSRK------ 726
Query: 785 SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQM 606
+G +ILVV+DN VN V L+ +G V S + + L RFD MD+QM
Sbjct: 727 ---IGAHILVVEDNPVNQEVIGQMLRHFGCRVQLASSALEGLRAL-CAERFDLIMMDIQM 782
Query: 605 PEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKS 426
P MDG EA G R+ + A TT PV+A+TA+ + E +
Sbjct: 783 PGMDGVEALGWFRR-------GPGERFAFRTPPTT-----PVVAVTANALGGDRERFLGL 830
Query: 425 GMDGYVSKPFDEEQLYQAVSR 363
G D Y+SKPF + QL+ +S+
Sbjct: 831 GFDEYLSKPFRQSQLHTMLSQ 851
>ref|ZP_00105980.1| COG2202: FOG: PAS/PAC domain [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 246 bits (628), Expect = 5e-63
Identities = 198/655 (30%), Positives = 315/655 (48%), Gaps = 25/655 (3%)
Frame = -2
Query: 2252 RYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQ 2073
R +++T +E+ K QAEAA+ AKS+FLA SHEIRTPMN V Q
Sbjct: 652 RREELTLKNFALEQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTDLLLDTDLTPQQ 711
Query: 2072 KDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKC 1893
+D+ +T + G AL+T+IND+LD +KIE+GKLELE PFDLR+ ++ +SL + K+ +K
Sbjct: 712 QDFVETVRSSGDALLTIINDILDFSKIESGKLELEEQPFDLRACVEQAISLLAPKAAQKN 771
Query: 1892 IELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM---EAN 1722
IEL + VP ++GD R RQ+L NL+ NA+KFTERG V + V L ++ E +
Sbjct: 772 IELVYLIQPQVPTQIVGDMTRLRQVLMNLLNNAIKFTERGEVVLSVELGAGDSVKQGENS 831
Query: 1721 QVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSN 1542
LH ++ R+ + A T + + R+ +
Sbjct: 832 SPLHPSL----VRLRPSLREAAPTTT-LRTSSRQ----------------------ARPS 864
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
S + + +I+DTG+GI + +R+F PF QAD S +R YGGTG+GL ISK L+++M
Sbjct: 865 ASSESPIQIQFAIKDTGIGITPEKIERLFHPFTQADVSMTRRYGGTGLGLVISKRLSKMM 924
Query: 1361 GGQISFTSHPSVGST----FTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGR 1194
GG + S VG + +L Y ++T +P V
Sbjct: 925 GGTLWVESQGIVGGNPSPRWKSRKSLSSPYSSQGSTFYFTITAQVPA---------VPEA 975
Query: 1193 PVRSAVTRYHLKRLGILLQVVNNMNAV---VKAFPGQNGAAGSREKASILFIES------ 1041
++ + KRL I+ + N + +++ + AA S ++A +
Sbjct: 976 EFSNSPMQLQGKRLLIVDDNLTNCQIISLQAESWEMETYAAKSAKEALAQLAQGIQFDIA 1035
Query: 1040 --DFWRPETD-VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKP 882
D P D + L +R Q Q + ++++TS ++ + D+ + KP
Sbjct: 1036 ILDMEMPAMDGITLARQIRRQSGCQ----NLPLVILTSLGREETFSDFGDVEFAASLSKP 1091
Query: 881 IRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLL--VGKNILVVDDNKVNLRVAAAALK 708
I+ S + I ++L + +E + P R L + IL+ +D VN +VA L+
Sbjct: 1092 IKQSQLYDVITRVLGNQPSEASIT-DFPLVDRHLTHPLPLRILLAEDTIVNQKVALLMLQ 1150
Query: 707 KYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNK 528
K G + V +G + + LQ +D MDV MPEMDG E +I Q E K
Sbjct: 1151 KIGYSADVVTNGVEVLKALQ-KQPYDLVLMDVHMPEMDGLETARRICQ-EWKVG------ 1202
Query: 527 LASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ ++A+TA+ ++ E C+ +GMD Y+SKP ++L QA+S+
Sbjct: 1203 -----------FRPHIIAITANAMRGDREVCLAAGMDDYISKPIQLQKLAQALSK 1246
Score = 58.9 bits (141), Expect = 1e-06
Identities = 36/141 (25%), Positives = 65/141 (46%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPE 600
L GK +L+VDDN N ++ + + + +S K+A++ L +FD +D++MP
Sbjct: 984 LQGKRLLIVDDNLTNCQIISLQAESWEMETYAAKSAKEALAQLAQGIQFDIAILDMEMPA 1043
Query: 599 MDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGM 420
MDG QIR+ N LP++ +T+ + T+ +
Sbjct: 1044 MDGITLARQIRRQSGCQN-------------------LPLVILTSLGREETFSDFGDVEF 1084
Query: 419 DGYVSKPFDEEQLYQAVSRLV 357
+SKP + QLY ++R++
Sbjct: 1085 AASLSKPIKQSQLYDVITRVL 1105
>ref|ZP_00659124.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Nocardioides sp. JS614]
gb|EAO06092.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Nocardioides sp. JS614]
Length = 847
Score = 243 bits (621), Expect = 3e-62
Identities = 192/631 (30%), Positives = 284/631 (45%), Gaps = 5/631 (0%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R++ + A A +KS FLAT SHEIRTPMNGV Q+ YA+
Sbjct: 317 RELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATDLDERQRQYAEGVSS 376
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
AL+T+IND+LD +K+EAG+L+LE + FDL ++++V L + ++ K +EL +
Sbjct: 377 AANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIAEPAQSKGLELLAYCSP 436
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
+P + GDP R RQ+L NL NAVKFT RG V VR L E S + + GA G
Sbjct: 437 ELPTCLRGDPSRLRQVLLNLASNAVKFTARGEVLVRASL-EASLQDGPEA--GAEAGVVV 493
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
R E T G G E ADR ++ F
Sbjct: 494 RFEVTDTGI-----GVEEADRERLFEPFS------------------------------- 517
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
QADSST+R YGGTG+GL+IS+ L MGGQI S P +
Sbjct: 518 ---------------------QADSSTTRRYGGTGLGLAISEHLVTAMGGQIGVDSRPGL 556
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
GSTF F+ L + +D+S + R + G++ ++VD + L G+
Sbjct: 557 GSTFWFTLPLGLA-EDLSASTPRGTED-----IAGLRVLVVDDNQTNRMILHDQLTAWGL 610
Query: 1145 LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSD 966
+ + + + A A R D P+ D L H R + L+
Sbjct: 611 HVDLAEDGPHALAAL-----ADAHRTHHPFDLAVLDLCMPDMDGLELAH-RISSDPTLT- 663
Query: 965 GHKVVLLVT----SEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRP 798
G + LL + S+ D G M KP++ S + +++Q ++ + P
Sbjct: 664 GLAMALLTSGGEISQTDARAVG--ITASMTKPVQLSRLRATLQDIIGTR------RPHTP 715
Query: 797 SFLRSLLVGK-NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACF 621
+ + G+ ILVV+D ++N VA L+ G ++G A+S + R+DA
Sbjct: 716 LHIPTTPAGRGRILVVEDGEINQLVAVGILEHLGYTTDVADNGVTALSAMGRT-RYDAVL 774
Query: 620 MDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYE 441
MDVQMP MDG++AT +IR++E +H P++AMTA +
Sbjct: 775 MDVQMPGMDGYQATREIRRLEGDV------------------HHTPIIAMTASATNDDRD 816
Query: 440 ECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
C+ +GMD Y+SKP + L +SR T
Sbjct: 817 RCLAAGMDDYISKPVNPHTLETVLSRWATST 847
>ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
Length = 683
Score = 233 bits (595), Expect = 3e-59
Identities = 187/623 (30%), Positives = 294/623 (47%), Gaps = 7/623 (1%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K +AEAA+ AKS FLA+ SHEIRTPM+ + Q+ Y + + G
Sbjct: 141 EAKEEAEAANRAKSDFLASMSHEIRTPMHAILGMAELLLETPLSPEQQRYVEIFRNAGEN 200
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L+ +IND+LD +K+EAG LELE + FDL +++ V + ++ K +ELA + +VP
Sbjct: 201 LLNIINDILDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPV 260
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNG--KGGRV 1680
+IGDP R +QIL NLVGNA+KFTE+G V V V ++ ++ G G +GG+V
Sbjct: 261 NLIGDPVRLQQILINLVGNAIKFTEKGEVVVHV-------EKSTELTGGPETGTEEGGKV 313
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
E L SI
Sbjct: 314 E-----------------------------------------------------LLFSIA 320
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
DTG+GIP + D++F F QADSST+R +GGTG+GLSIS+ L E+MGG I S G+
Sbjct: 321 DTGIGIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGHIRLDSEVGKGT 380
Query: 1319 TFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILL 1140
T TF+A G + EA G++ ++D + R L G
Sbjct: 381 TATFTARFS---VQAEGKKLAEIVEAGVEKLTGLRTFIIDDNATNRMILREILSGWGSCS 437
Query: 1139 -QVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDG 963
+ +VK + AG +L D+ P D + R Q+N L+ G
Sbjct: 438 DEADGGERGIVKMQKARE--AGKPYDLLLL----DYQMPGLDGFGVAE-RIQRNPSLA-G 489
Query: 962 HKVVLLVT--SEADKDKYGSI-FDIVMCKPIRASTIASSI-QQLLKVEIAERKDNQNRPS 795
+V+L + D ++ + + KP++ + + ++I + K ++A RK P+
Sbjct: 490 IPIVMLTSDLGRGDPRRFRELGIASFLTKPVKRAELKNAILTTISKTKVAGRKPAPQAPA 549
Query: 794 FLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMD 615
S +IL+ +D++ N + + LK + E+G A+ + R+D FMD
Sbjct: 550 APESHR-PLSILLAEDSEDNRLLLMSYLKSRPYRIDIAENGVIALDKFK-TGRYDLVFMD 607
Query: 614 VQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEEC 435
+QMPEMDG+ AT +IR+ ER+++L P++A+TA + +
Sbjct: 608 IQMPEMDGYTATREIRKW------EREHQLR----------ETPIVALTAYAYKEDRRKS 651
Query: 434 IKSGMDGYVSKPFDEEQLYQAVS 366
+ +G +G++ KP + L +A+S
Sbjct: 652 LDAGCNGHLVKPIKKAVLLEAIS 674
>ref|ZP_00658601.1| PAS [Nocardioides sp. JS614]
gb|EAO06596.1| PAS [Nocardioides sp. JS614]
Length = 1090
Score = 232 bits (591), Expect = 9e-59
Identities = 196/669 (29%), Positives = 297/669 (44%), Gaps = 10/669 (1%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E + A A KS+FLAT SHEIRTPMNGV Q+ A+ Q
Sbjct: 415 QLAEARDDAMEASRLKSEFLATMSHEIRTPMNGVIGLTDLLLLSELDDHQRRLAENLQGA 474
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G L+ +IND+LD +KIE+GKLELE+ FD+R++ D V S+ S + K +EL V C
Sbjct: 475 GLTLLGIINDILDLSKIESGKLELESADFDVRAVFDQVASVLSGPAHAKGLEL-VVACH- 532
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
P+V + L G+AV+F G + +N+ +N V
Sbjct: 533 -PEVPV-----------QLRGDAVRF---GQIL--------TNLGSNAVK---------- 559
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSD-------R 1524
F E E+ ++S+S+
Sbjct: 560 --------------------------FTDQGEVVVQARVLAEHEHEHESESEPGPGPGHE 593
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V L + + DTGVGI +++R+F F QAD ST+R +GGTG+GL+IS+ LA +GG+I
Sbjct: 594 VVLQVDVADTGVGIEPHSRERLFDAFTQADPSTTRRHGGTGLGLAISRQLAIALGGEIWV 653
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S P GSTF+F+A SG + S A A G +A+++D +
Sbjct: 654 ESEPGRGSTFSFTARFGRG----SGATGASREHARHLA--GRRALVIDDNETNRFILE-- 705
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
++LG + +A AA S + + + D P TD + L Q
Sbjct: 706 -EQLGAWRMRPVAVACATEAIATLREAARSGDPYDVALL--DLMMPGTDGLM---LARQI 759
Query: 983 NGQLSDGHKVVLLVTSE---ADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKD 813
S G +LL+TS+ ++ G+ + KP+R + ++Q LL
Sbjct: 760 RADPSVGAPAMLLLTSDQTVTREEVEGAGVHASLSKPVRHGELRGALQALL-----GDAT 814
Query: 812 NQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRF 633
+ P+ +G +LVV+DN+VN VAA L+ G V V G +A+ LL PH +
Sbjct: 815 TRPAPASPAGPGLGIRVLVVEDNQVNQLVAAGLLENLGCTVDVVSDGVEAVRLLTRPHEY 874
Query: 632 DACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQ 453
A MD +MP +DGF+AT Q+R+ E +P++A+TA ++
Sbjct: 875 AAALMDCRMPRLDGFDATRQVRRHE------------------PVGRRVPIIALTASAME 916
Query: 452 ATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV*CSKYDGPDFSFINRSEASP 273
E C+ +GMD Y++KP D +L + + V D R ASP
Sbjct: 917 GERERCLDAGMDDYLTKPVDTAELERVIREWAVPERD-----------------RRTASP 959
Query: 272 SCLCPADSI 246
+ PAD +
Sbjct: 960 ASPEPADGL 968
>ref|NP_902168.1| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
Length = 738
Score = 229 bits (585), Expect = 5e-58
Identities = 189/634 (29%), Positives = 290/634 (45%), Gaps = 13/634 (2%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
M E K AE A AKS FLA SHEIRTPMN + Q++Y G
Sbjct: 1 MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDLDDQQRNYIGKIHNAG 60
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
+L+ +IND+LD +K+EAGKLELEA PF L ++D V +L + K+ +K +EL +V
Sbjct: 61 TSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETAGDV 120
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
P+ LVG+A++ QVL N G +
Sbjct: 121 PQ--------------GLVGDALRL--------------------GQVL---TNLAGNAI 143
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
+ T G + + G + D+V L +
Sbjct: 144 KFTETGQVSIIIG-------------------------------QVERIGDKVQLKFCVH 172
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
DTG+G+ + Q R+F F QAD ST+R +GGTG+GL+I+K L ELMGG + S P GS
Sbjct: 173 DTGIGMSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGS 232
Query: 1319 TFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILL 1140
+F FS L S + DS R ++LP +G++ ++VD V LK+LG +
Sbjct: 233 SFIFSCWLGVSAET---DSRR---QSLPKEIRGLRVLVVDDNQSAVDVLCAQLKQLGFEV 286
Query: 1139 Q-VVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQLSD 966
Q +N A+ K ++ + F+ D+ PE D ++ + +R Q+S
Sbjct: 287 QGCLNGHEALSKV-----RQDCLQKPFDVAFV--DWMMPEMDGLEAVRRMR-----QVSR 334
Query: 965 GHKVVLLVTSEADKDKY---GSIFDIVMCKPIRASTIASSIQQLL------KVEIAERKD 813
++V++ D+ + + D M KP+ S + + ++ + + + D
Sbjct: 335 KMRIVMVTAFGRDEIRVKARAAGCDAFMVKPVNLSQLYDVLLEVFGFGRSGGLSLFDETD 394
Query: 812 NQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS--LLQPPH 639
R G ++L+V+DN++N ++A L+ GA ++ +G+ A+ L P
Sbjct: 395 QLPR-------FDGAHLLLVEDNRINQQIAIELLEGTGATITVAANGQAALDKLLAYGPK 447
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
FDA MDVQMP MDG EATG+IR S LPV+AMTAD
Sbjct: 448 AFDAVLMDVQMPVMDGIEATGRIR-------------------SQPGFIDLPVIAMTADA 488
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ E C+ +GM +++KP D L+ ++R V
Sbjct: 489 LVEERERCLAAGMVDHIAKPIDPHILFSTLARWV 522
>ref|NP_902313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
ATCC 12472]
gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
ATCC 12472]
Length = 1436
Score = 226 bits (577), Expect = 4e-57
Identities = 193/663 (29%), Positives = 293/663 (44%), Gaps = 14/663 (2%)
Frame = -2
Query: 2309 LGTFVIWM---LLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIR 2139
L T IW L G+ A R +K E R +E K +AE A AKS+F+A SHEIR
Sbjct: 766 LVTTGIWQDGWLYGFVCIAKDVRAEK--EATRMLESAKEEAERASRAKSEFVANMSHEIR 823
Query: 2138 TPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVP 1959
TPMNGV Q+ Y Q+ R+L++++ND+LD +K+EAGKLE
Sbjct: 824 TPMNGVLGMLELLSNTRLDGVQRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARAR 883
Query: 1958 FDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE 1779
+DL ++ + ++ S + K +EL + V VP ++GD R +Q+L NL
Sbjct: 884 YDLDEVLGALAAMMSMHAARKRLELVIAVDPAVPAALVGDALRLQQVLVNLA-------- 935
Query: 1778 RGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFX 1599
G ++ TA G G E D R+ W F
Sbjct: 936 -----------------------------GNAIKFTAEGEVAVSVGREKRDGRD-WLLF- 964
Query: 1598 XXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSR 1419
++ DTGVG+ +F PF+QADSS +R
Sbjct: 965 ------------------------------AVRDTGVGMEAPLLRTIFDPFIQADSSNTR 994
Query: 1418 NYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEAL 1239
+GGTG+GL+IS+ L ELMGG+I S P GS F F+ L+ + K+
Sbjct: 995 RFGGTGLGLTISRRLVELMGGEIGVESRPGEGSRFWFALPLEPADKE------------- 1041
Query: 1238 PTAFKGMKAILV--DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREK 1065
P A + +LV D R A+ +H+ RLG L + V + A G+ G
Sbjct: 1042 PPAVLPLGRVLVAADNASSRQALC-WHVARLGGLPEAVAGAQEAMAALEGE----GETAF 1096
Query: 1064 ASILFIESDFWRPE-TDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD------KDKYGSI 906
A L D+ P+ + L +R + G +VL+ + AD +++ +
Sbjct: 1097 AGALL---DWRLPDGNGLDLCREIRRR-----WPGRDIVLIAMASADELVGLEREEGRAA 1148
Query: 905 FDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRV 726
D V+ KP+ A +A + A RP+ L IL+V+DN +N +V
Sbjct: 1149 LDGVLVKPVIAGVLADAWM------AARASKRAARPAARAGNLKPARILLVEDNPINQQV 1202
Query: 725 AAAALKKYGANVSCVESGKDAISLL-QPPHRFDACFMDVQMPEMDGFEATGQIR-QMELK 552
A L++ G V VE+G+ A+ +L + + MD QMPEMDG A IR ++ L+
Sbjct: 1203 ACGLLQQAGMQVETVENGRLAVEVLRERGGEYALVLMDRQMPEMDGDTAAALIRGELGLQ 1262
Query: 551 ANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQA 372
LP++AM+A + A EC+++GMD +++KP ++LY
Sbjct: 1263 ---------------------LPIVAMSAGLSPAERSECLRAGMDEFIAKPIQLDRLYAV 1301
Query: 371 VSR 363
+ R
Sbjct: 1302 LDR 1304
>ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
Length = 1223
Score = 224 bits (571), Expect = 2e-56
Identities = 184/661 (27%), Positives = 309/661 (46%), Gaps = 13/661 (1%)
Frame = -2
Query: 2300 FVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGV 2121
FVI +L+G A+S + T + + +A+AA+ AKS FLA SHEIRTPMN +
Sbjct: 442 FVIILLMGLLANKAHSALETFTHS---LAAARDEADAANHAKSDFLANMSHEIRTPMNAI 498
Query: 2120 XXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSL 1941
Q++Y ++ L+ LIND+LD +KIEAGKL++E V F L ++
Sbjct: 499 IGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENV 558
Query: 1940 MDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFV 1761
+D++ +L ++ ++ +EL + V +VP TNL+G+ ++
Sbjct: 559 LDNITNLVGLRASDRGLELLIQVDRDVP--------------TNLIGDPLRL-------- 596
Query: 1760 RVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXX 1581
Q+L +N V+ T G A+R+
Sbjct: 597 ------------GQIL---INLSNNAVKFTEKGEVKI--SISVAERQG------------ 627
Query: 1580 XXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTG 1401
D + L ++ D+G+G+ + ++FT F QADSST+R YGGTG
Sbjct: 628 -----------------DDIKLNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTG 670
Query: 1400 IGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKG 1221
+GL+ISK L++LMGG I ++ GSTF+F+ + S+ S + +P +
Sbjct: 671 LGLAISKELSQLMGGDIHVSTELGKGSTFSFTIATRVSH------SIQQHRVVVPASINN 724
Query: 1220 MKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIES 1041
+K ++VD + L+ L++ +++ V + A ++ K L I S
Sbjct: 725 LKVLVVDDNSSARLIVGDILES----LKLTPTLSSSVDEALIELHTADAQNKPFDLVI-S 779
Query: 1040 DFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADK-----DKYGSIFDIVMCKPIR 876
D+ P+ D ++ L E KNGQ K+++L + ++ ++ G ++ KPI
Sbjct: 780 DWKMPKRDG--VDLLAELKNGQQLTMPKIMMLTAYDREELAELIEQRGFEVPSILDKPIT 837
Query: 875 ASTIASSIQQLLKVE----IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALK 708
+S + SI L ++ + QN+ + ++ L G NIL+V+DN++N +A L+
Sbjct: 838 SSHLYDSIVSLYGLDSDRVSRSELEQQNQLANVQQ-LAGANILLVEDNEINQELATELLE 896
Query: 707 KYGANVSCVESGKDAISLLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEE 540
V+ E+G+ AI L Q FD MD QMP MDG+EAT IR
Sbjct: 897 GQQIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYEATLHIR--------- 947
Query: 539 RKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 360
NK+ + P++AMTA+V++ E+ + GM ++KP D ++ ++
Sbjct: 948 --NKIKDTQ--------TPIIAMTANVMERDKEKALNCGMTDIIAKPIDVGSMFATLANW 997
Query: 359 V 357
V
Sbjct: 998 V 998
>dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 110]
ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
USDA 110]
Length = 743
Score = 222 bits (566), Expect = 7e-56
Identities = 171/632 (27%), Positives = 289/632 (45%), Gaps = 6/632 (0%)
Frame = -2
Query: 2237 TEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQ 2058
TE R + + + QA+AA+ AKS+FLA ASHEIRTP+NG+ Q YA+
Sbjct: 216 TETERALSDARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLLDTTLTPEQATYAK 275
Query: 2057 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAV 1878
+ G AL+ LI ++LD +KIEAGKL+LE PF L +L++++ L + +++ K +E+A
Sbjct: 276 AVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAPRAQAKTLEIAA 335
Query: 1877 FVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMN 1698
+V + +P V VG+A + QVL +N
Sbjct: 336 YVDERLPLEV--------------VGDAARL--------------------RQVL---LN 358
Query: 1697 GKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVT 1518
G ++ TA+G + E R N
Sbjct: 359 LAGNAIKFTASGGVALI--VEPGIRPNE-------------------------------- 384
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
++ + DTG+GI +AQ R+F F QAD +R YGGTG+GL+IS+ + + MGG+I+ S
Sbjct: 385 ISFLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGGRITLAS 444
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLK 1158
P GSTF + L S +R+ A P+ K+IL+ + +++ L+
Sbjct: 445 EPGKGSTFEVAVPLAPS-------EARAGQTAFPSPDLTGKSILLIAEGIEASLIARRLE 497
Query: 1157 RLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNG 978
R G +V + P ++ W + + + G
Sbjct: 498 RWGSQTCLVTDATVAEALLPERS------------------WHAVLVDRAIGPAIADRLG 539
Query: 977 QLSDGH--KVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
++ H + ++L+TS + +K + F + KP+RA+++A+ + +V E
Sbjct: 540 GVARAHAPQRLVLLTSSSRHEKQSAAFTGFLVKPLRAASLAARLALTPEVASPELAPEPP 599
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA----ISLLQPPHR 636
+ + G ++LV +DN++N + + L K G V G+ A ++
Sbjct: 600 VEATSAAPARGLSVLVAEDNEINALLMRSLLTKLGHRVVIAVHGEAALESWLAASSAGTP 659
Query: 635 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 456
+D MD+QMP++DG EAT +IR E + T +H P+LA+TA+ +
Sbjct: 660 YDLVLMDIQMPQLDGIEATKRIRAHE----------------AATGGHHTPILALTANTL 703
Query: 455 QATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 360
C ++GM+G++ KP D ++L +A++ L
Sbjct: 704 VEDRYACFEAGMNGFLIKPLDRDKLDEALAGL 735
>dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
Length = 1328
Score = 221 bits (563), Expect = 2e-55
Identities = 180/628 (28%), Positives = 278/628 (44%), Gaps = 8/628 (1%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E K A+A AK FLA SHEIRTPMN + +Q+ Y
Sbjct: 592 ELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINES 651
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+ L+ +IND+LD +KIEAGKL +E++ F L + +++ ++ S K++EK IE F+ D
Sbjct: 652 AKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIE---FLLDI 708
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
P+V +G LVG+ ++ G V V +C E ++L M
Sbjct: 709 DPRVPVG-----------LVGDPLRL---GQVLVNLCGNAVKFTEKGEILVSVM------ 748
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISI 1503
SD VTL S+
Sbjct: 749 ---------------------------------------------PESQSSDDVTLRFSV 763
Query: 1502 EDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVG 1323
+DTG+GI + +F F QAD+S +R +GGTG+GLSISK L ELMGGQ+S +S +G
Sbjct: 764 KDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMG 823
Query: 1322 STFTFS-------ATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
STFTF+ A ++ K ISG G +A++VD
Sbjct: 824 STFTFTIHCGLQEAKMRDIAKPISG-------------LAGKRALIVDDND--------- 861
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
IL+ +++ M KA A +++ + D+ P + L Q+
Sbjct: 862 -SARNILMTLLSAMQFDAKAVSNGFEALDELRQSTFDMVFVDWNMPGMNGLELLQTAHQE 920
Query: 983 NGQLSDGHKVVLLVTSEADKDKYGS-IFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQ 807
+ +V E D+ S + D ++ KP+ S + +I +E R +
Sbjct: 921 RLLAETKNFLVTAYGREISMDENSSKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTR--SS 978
Query: 806 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDA 627
+F + + G+ +L+V+DN+VN VA L N+ ++GK AI L+ H D
Sbjct: 979 TTATFEKPVFDGQTLLLVEDNEVNQEVAIGLLNGTNLNIITADNGKLAIEALE-NHPIDL 1037
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
MD+QMP MDG AT IR+ A LP++AMTA+ +Q+
Sbjct: 1038 VLMDMQMPVMDGITATKAIRERAEWAT-------------------LPIVAMTANAMQSD 1078
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAVSR 363
E C ++GM+ +V+KP + LYQ +S+
Sbjct: 1079 VERCHEAGMNDHVAKPINVHNLYQVLSQ 1106
>ref|ZP_00317632.1| COG2202: FOG: PAS/PAC domain [Microbulbifer degradans 2-40]
Length = 1653
Score = 221 bits (562), Expect = 2e-55
Identities = 178/622 (28%), Positives = 278/622 (44%), Gaps = 13/622 (2%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AE A KS+FLA SHEIRTP+NGV Q+ A+ +L+
Sbjct: 996 KNAAELAARTKSEFLAMMSHEIRTPLNGVLGMLNLVKRTQLEDKQRYQIDIAKSSAESLL 1055
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
LIND+LD +K++AGKL+LE V F++ +L++D+ + ++ E+ EL + +
Sbjct: 1056 NLINDILDFSKVDAGKLDLEVVDFNIITLLEDIAHAMAGRALERGNELIIDTTKLEFTYL 1115
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
GDP R RQIL NL+GNA+KFT + G V TA
Sbjct: 1116 SGDPSRLRQILVNLIGNAIKFT-----------------------------QNGEVTVTA 1146
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
+ NT SGF L IS+ DTG+
Sbjct: 1147 SLTKNT-SGFN---------------------------------------LNISVADTGI 1166
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GI + +F+ F Q D+ST+R YGGTG+GL+I K L LMGG I+ TS GS F+F
Sbjct: 1167 GIAEEKIPLLFSAFTQVDASTTRKYGGTGLGLAICKKLCALMGGDINITSQEGNGSEFSF 1226
Query: 1307 SATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVN 1128
+K+S K+I LP + VD + + K IL +++
Sbjct: 1227 QILVKNSVKNID----------LPPLIEQK----VDLNDKTIFIAESNPKNTAILENMIS 1272
Query: 1127 NMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVL 948
+ + + + E + FI+ T ++ + L+ + N + +
Sbjct: 1273 SKRCIAVSSLPDSNLNLPNEPIDVAFIDRKLL---TSMESITPLKNKPNFANTQWLMLTA 1329
Query: 947 LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSL---- 780
+ ++ ++ FD + KPI S + S++ LK++ + + Q + S +L
Sbjct: 1330 INQTKDIENYTAKGFDTYLTKPITQSGLTLSLKS-LKLDSNQAESEQQQTSEKLTLPQSP 1388
Query: 779 -----LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQP---PHRFDAC 624
IL+VDDN VN VA L+ +G + +G +AI+ L +
Sbjct: 1389 QGEASQFAARILLVDDNTVNQDVAKMMLEDFGLIIDVANNGLEAIAALDACSIREPYSLI 1448
Query: 623 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE-YHLPVLAMTADVIQAT 447
MD QMPE+DG+E T +IR +G+T + +P++AMTA+ ++
Sbjct: 1449 LMDCQMPELDGYETTKRIR-----------------KGATDFDNTKIPIIAMTANAMKGD 1491
Query: 446 YEECIKSGMDGYVSKPFDEEQL 381
E+CI +GMD Y+SKP + + L
Sbjct: 1492 KEKCIAAGMDDYLSKPIEADAL 1513
>ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a]
gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a]
Length = 1353
Score = 219 bits (559), Expect = 5e-55
Identities = 189/641 (29%), Positives = 286/641 (44%), Gaps = 13/641 (2%)
Frame = -2
Query: 2240 VTEDCRKMEEL---KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+TE EL K+ AEAA+ AKS FLA SHEIRTPMN V Q+
Sbjct: 618 ITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTALNDQQR 677
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
Q+ GR L+ +IND+LD AKIEAG++ LE PF R L+D++ LF+ +++EK +
Sbjct: 678 QLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGL 737
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLH 1710
+V V ++P L+G+A++ NQ+L
Sbjct: 738 RFSVNVVASLPG--------------QLIGDALR--------------------VNQIL- 762
Query: 1709 GAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDS 1530
MN G ++ T+ G + E +
Sbjct: 763 --MNLVGNALKFTSVGGVDVTVSRE-------------------------------DDHA 789
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D L S++DTG GIP ++F+PF QAD+ST+R +GGTG+GLS+ + LAE MGG+I
Sbjct: 790 DTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRI 849
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD------GRPV 1188
S GS F + S D+ S E + + ++ + G V
Sbjct: 850 GVESELGTGSEFWVELPFQISQSDLEPSGPGSSLEVMLLSDDAQSSMALQRLCRGLGWRV 909
Query: 1187 RSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQL 1008
S + L+ LQ N++NA + +L + D+ +P+
Sbjct: 910 ASLTGEHDLRTA---LQERNHVNAALP---------------DVLLV--DWQQPQV---- 945
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLK--V 834
E+ + V+LVTS + + + D V+ KP+ +S + +++ +
Sbjct: 946 -----EEVQQLIEATPLPVILVTSSEIRAELHPLVDKVLLKPLDSSALFNAVNACIARYQ 1000
Query: 833 EIAERKDNQNRPSFLRSL-LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS 657
ER R +L L G ++L+VDD+++NL VA+ L++ GA V +G A+
Sbjct: 1001 GSTERVIQATRMDTSMTLWLSGLHLLLVDDSEINLEVASLLLQQQGAVVQTCSNGLLALE 1060
Query: 656 LL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPV 480
L Q P FDA MDVQMPEMDG+EAT ++R S LPV
Sbjct: 1061 RLRQTPDFFDAVLMDVQMPEMDGYEATRRLR-------------------SELGLTRLPV 1101
Query: 479 LAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
LA+TA + + +GMD +++KP D L +AV R V
Sbjct: 1102 LALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVRRAV 1142
>gb|AAZ44799.1| PAS [Dechloromonas aromatica RCB]
ref|YP_283269.1| PAS [Dechloromonas aromatica RCB]
Length = 1193
Score = 219 bits (558), Expect = 6e-55
Identities = 182/628 (28%), Positives = 276/628 (43%), Gaps = 9/628 (1%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+ E K AEAA AK+ FLA SHEIRTPMN V Q+DY G
Sbjct: 545 LTEAKHAAEAAAEAKAAFLANMSHEIRTPMNAVIGLAHLLLKGDLSGKQRDYISRIHGSG 604
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
+ L+ LIND+LD +KIEAG++ LE F L ++D+V S+ +++EK + + V +V
Sbjct: 605 QMLLGLINDILDFSKIEAGRMVLEETEFALDDVLDNVTSVLLHRAQEKGLIMQYVVEPDV 664
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
P TNL+G+ ++ Q+L +N G +
Sbjct: 665 P--------------TNLLGDPLRLA--------------------QIL---INLLGNAL 687
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
+ TA+G+ ++ R L I ++
Sbjct: 688 KFTASGSITVFV-------------------------------RRLPGNTARAELEIDVQ 716
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
DTGVG+ + Q +F F QADSS +R YGGTG+GL+I K LA+LM G I TS VGS
Sbjct: 717 DTGVGMSQEQQQVLFQAFSQADSSITRKYGGTGLGLTICKRLAQLMRGDIWVTSQSGVGS 776
Query: 1319 TFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILL 1140
TFTF+ L S EA P +A++VD P+ A+ L++ G
Sbjct: 777 TFTFTVNL-----------GLSTLEANPPLSAMRRALVVDDSPLARAILIRLLEKHG--- 822
Query: 1139 QVVNNMNAVVKAFPGQNGA-----AGSREKASILFIESDFWRPETDVQLLNHLREQKNGQ 975
A P ++GA A F+ DF P D L E Q
Sbjct: 823 ---------YSAIPAESGAEALGLLADTRTAPFEFVTIDFNMPGMDGL---ELSEAIRNQ 870
Query: 974 LSDGHKVVLLVTSEA---DKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
+S ++V++ S+ D+ D V+ KP+ A+ I ++ N
Sbjct: 871 ISPCPRLVMVTASDTAALGSDERLHCVDAVLSKPVTAAQIGKLVRD-------RELQNHA 923
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-SLLQPPHRFDA 627
+P+ + L G IL+VDD NL +A L+ +G V ++G A+ ++ + +D
Sbjct: 924 KPN-APAPLAGLRILLVDDMPTNLLIAGEMLESFGITVDTADNGVLALKKVIDEGNDYDI 982
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
MD+QMPEMDG EAT ++R +E + LP++AMTA+ +
Sbjct: 983 VLMDIQMPEMDGLEATRRLRAVERSQS-------------------LPIIAMTANAQDSE 1023
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ C+ +GM+ +++KP D L + R
Sbjct: 1024 RQRCLAAGMNDFLTKPIDPGLLQDTLFR 1051
>gb|AAO07892.1| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
ref|NP_762902.1| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
Length = 1320
Score = 219 bits (558), Expect = 6e-55
Identities = 179/628 (28%), Positives = 277/628 (44%), Gaps = 8/628 (1%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ + K A+A AK FLA SHEIRTPMN + +Q+ Y
Sbjct: 584 ELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINES 643
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+ L+ +IND+LD +KIEAGKL +E++ F L + +++ ++ S K++EK IE F+ D
Sbjct: 644 AKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIE---FLLDI 700
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
P+V +G LVG+ ++ G V V +C E ++L M
Sbjct: 701 DPRVPVG-----------LVGDPLRL---GQVLVNLCGNAVKFTEKGEILVSVM------ 740
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISI 1503
SD VTL S+
Sbjct: 741 ---------------------------------------------PESQSSDDVTLRFSV 755
Query: 1502 EDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVG 1323
+DTG+GI + +F F QAD+S +R +GGTG+GLSISK L ELMGGQ+S +S +G
Sbjct: 756 KDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMG 815
Query: 1322 STFTFS-------ATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
STFTF+ A ++ K ISG G +A++VD
Sbjct: 816 STFTFTIHCGLQEAKMRDIAKPISG-------------LAGKRALIVDDND--------- 853
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
IL+ +++ M KA A + + + D+ P + L Q+
Sbjct: 854 -SARNILMTLLSAMQFDAKAVSNGFEALDELRQGAFDMVFVDWNMPGMNGLELLQTAHQE 912
Query: 983 NGQLSDGHKVVLLVTSEADKDKYGS-IFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQ 807
+ +V E D+ S + D ++ KP+ S + +I +E R +
Sbjct: 913 RLLAETKNFLVTAYGREISMDENSSKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTR--SS 970
Query: 806 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDA 627
+F + + G+ +L+V+DN+VN VA L N+ ++GK AI L+ H D
Sbjct: 971 TTVTFEKPVFDGQTLLLVEDNEVNQEVAIGLLNGTNLNIITADNGKLAIEALE-HHPIDL 1029
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
MD+QMP MDG AT IR+ A LP++AMTA+ +Q+
Sbjct: 1030 VLMDMQMPVMDGITATKAIRERAEWAT-------------------LPIVAMTANAMQSD 1070
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAVSR 363
E C ++GM+ +V+KP + LYQ +S+
Sbjct: 1071 VERCHEAGMNDHVAKPINVHNLYQVLSQ 1098
>ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
Length = 2241
Score = 218 bits (554), Expect = 2e-54
Identities = 175/632 (27%), Positives = 298/632 (47%), Gaps = 4/632 (0%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+++TE R++ + + A A+ +KS FLA SHEIRTPMNGV QK+
Sbjct: 1472 NRITERTRELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKTNLDNKQKN 1531
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
YA+ +L+T+IND+LD +KIE GK+ LE PF+L L+ V ++ ++ K +E
Sbjct: 1532 YAKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRAHTKDLE 1591
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
L V + N+P NL+G+A++ Q+L
Sbjct: 1592 LIVDISPNIP--------------FNLIGDALRL--------------------EQIL-- 1615
Query: 1706 AMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSD 1527
+ T+N T SG ++ N + D
Sbjct: 1616 --------LNLTSNAVKFTKSGHVIIRVQSL---------------------NEVEIDDM 1646
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
V L I +EDTG+GI Q +F F QA+ S +R +GGTG+GL+I K L ELM GQI
Sbjct: 1647 HVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQLVELMQGQIQ 1706
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRY 1167
S P++GSTF+ L+ + ++++ S++++ + + ++VD P+ V
Sbjct: 1707 VRSQPNIGSTFSLKINLERA-EELAQPSAKNI-------YHNLNILVVDDNPISQQVISR 1758
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQ 987
L L I N+ + V+ Q+ A+ + ++ D+ P D + + +Q
Sbjct: 1759 MLGHLNISCTQANDGSKAVECV--QDAASKNTHFDMVIM---DWKMPNMDGIEASRIIKQ 1813
Query: 986 KNGQLSDGHKVVLLVTSEADKDKYGS--IFDIVMCKPIRASTIASSIQQLLKVEIAERKD 813
+ + H ++L + GS D + KP+ ST+ +I ++L + + +
Sbjct: 1814 ELELDTPPHILMLSAYDRDEVKLLGSPITIDHYLEKPVSQSTLVETIGEVLGMCAQTQLE 1873
Query: 812 NQNRPSFLRSLLVGKN--ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
++ F + K+ IL+V+DN++N VA L + G V +G+DA++L+ +
Sbjct: 1874 SEPLTQFDANKFDFKHCQILLVEDNEINRHVALELLSETGIKVDIALNGQDAVNLVS-VN 1932
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
+ MD+QMP MDG AT +IRQ LK+ EE LP++AMTA
Sbjct: 1933 DYHLILMDIQMPIMDGLTATKRIRQ--LKSKEE-----------------LPIIAMTAHA 1973
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ + E+ + +GM+ +++KP + L+ A+++
Sbjct: 1974 MPSEKEKSLIAGMNDHLTKPIEPNYLFNALNQ 2005
>ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella
oneidensis MR-1]
gb|AAN53935.1| sensory box histidine kinase/response regulator [Shewanella
oneidensis MR-1]
Length = 1765
Score = 215 bits (547), Expect = 1e-53
Identities = 179/621 (28%), Positives = 280/621 (45%), Gaps = 8/621 (1%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K +A+AA AK FLA SHEIRTPMN + QK+Y + + ++L+
Sbjct: 1030 KDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLL 1089
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
++IND+LD +KIEAGKL++E V F L ++++D+ +FS ++ +K IEL V NVP+ +
Sbjct: 1090 SIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHL 1149
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
+GDP R Q+L NL+ NA+KFTERG V + + L E N + VL ++ G + T
Sbjct: 1150 LGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDV--VLRFSVRDSG--IGLTQ 1205
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
F AD + +Y TG+
Sbjct: 1206 EQQSKLFKSFTQADTSTTRKY----------------------------------GGTGL 1231
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
G+ + Q L ELMGG I S GSTF F
Sbjct: 1232 GLAISKQ------------------------------LVELMGGSIGVESQLGHGSTFFF 1261
Query: 1307 SATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVN 1128
+ L IS + + L GM ++ D + R L+ +G + V
Sbjct: 1262 TVKL-----CISSGQKLFVGQEL----DGMSILVADDNATARDIMRTTLESMGFNVDTVR 1312
Query: 1127 NMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQ-KNGQLSDGHKV 954
+ + + S+++ ++ I D+ P D ++ +++Q KN
Sbjct: 1313 SGDEAIMRC--------SQQEYAVALI--DWKMPNLDGIETAKQIKQQTKNAPR------ 1356
Query: 953 VLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQLLKVE--IAERKDNQNRPSF 792
+L+V++ A++D I + + KPI AS + I L + R+ N
Sbjct: 1357 ILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPE 1416
Query: 791 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
L L GK IL+V+DN++NL VA L++ G +S +G+ A+ L FD MD
Sbjct: 1417 LLLPLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKL-AQQSFDLVLMDC 1475
Query: 611 QMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECI 432
QMP MDG++AT IRQ + +LA LPV+AMTA+ + E C+
Sbjct: 1476 QMPVMDGYQATKAIRQ---------RPELA----------QLPVIAMTANAMAGDKEMCL 1516
Query: 431 KSGMDGYVSKPFDEEQLYQAV 369
++GM+ +++KP + LYQ +
Sbjct: 1517 RAGMNDHIAKPIEVNLLYQTL 1537
>ref|ZP_01109165.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine [Alteromonas macleodii
'Deep ecotype']
gb|EAR06559.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine [Alteromonas macleodii
'Deep ecotype']
Length = 891
Score = 214 bits (546), Expect = 2e-53
Identities = 180/632 (28%), Positives = 278/632 (43%), Gaps = 6/632 (0%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+ + E K +AE A +KS FLA SHEIRTPMNG+ T + Y A
Sbjct: 377 KALTESKIKAEKATASKSIFLANMSHEIRTPMNGIIGLIELAQQQELSPTVRGYLDKAAY 436
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G+ LI++IND+LD +KIEAGKL++E V F L SL D+++++ + +++EK + + V
Sbjct: 437 SGQILISVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFNVNP 496
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
+P VIGDP R QI+ N+ NAVKFTE+G + + G +N KG
Sbjct: 497 MLPPQVIGDPLRIAQIIMNIGNNAVKFTEQGRIEI--------------AFDGTLNEKGN 542
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
R+ T +
Sbjct: 543 RLNLT-----------------------------------------------------MR 549
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
I D+G+G+ D++F PF QAD ST+R YGGTG+GL+I L ELM G+I +S
Sbjct: 550 ITDSGIGMSKAQLDKIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRIDASSTMGK 609
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAIL--VDGRPVRSA-VTRYHLKR 1155
GSTF + L+ AFK +L PV S VT L
Sbjct: 610 GSTFEVNLPLR--------------------AFKNQPGVLEQTPQLPVGSVYVTDAPLLP 649
Query: 1154 LGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQ 975
Q+ + V+ QN S I+ I +F ++ LN L
Sbjct: 650 TSYCTQIQLSSENVLTLEEAQN--TPSLPDYIIVDIH-EFGAFRQNISWLNSL------- 699
Query: 974 LSDGHKVVLLVTS--EADKDKYGSIF-DIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
L G V L++ S A + KY +++ ++ P + + Q++ + + Q+
Sbjct: 700 LDTGKSVGLVMESAGSALQAKYDTLWKGPLIMHPFTPAQFERFVNQVISKD--SNYEGQH 757
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 624
+ +IL+V+DN +N V L G E GK A+ L+ ++D
Sbjct: 758 FNEEAEETPLEGHILLVEDNNINQLVTGEMLTNLGLTFDIAEDGKQAVQKLENAPQYDLV 817
Query: 623 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATY 444
MDVQMP MDG+EAT Q+R+ G T +P++ ++A+ ++
Sbjct: 818 LMDVQMPVMDGYEATRQLRE----------------RGFT----DVPIIGLSANAMKEDR 857
Query: 443 EECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
+ + +GM+ Y++KP ++ L + R +V T
Sbjct: 858 QSAMDAGMNDYLTKPIKQKSLIGMLRRYLVKT 889
>dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
Length = 1616
Score = 214 bits (544), Expect = 3e-53
Identities = 179/627 (28%), Positives = 287/627 (45%), Gaps = 10/627 (1%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AE A KS FLA SHEIRTPMN + Q DY + Q G+ L+
Sbjct: 876 KELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTPRQHDYVKKIQSAGQHLL 935
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
+IND+LD +KIEAGKL +E F+L ++D++ +L + K+R K +EL + VP+
Sbjct: 936 GIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEVPRT- 994
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
LVG++++ Q+L +N V+ T
Sbjct: 995 -------------LVGDSLRL--------------------GQIL---INYANNAVKFTE 1018
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
NG + ++ + + V L ++ DTG+
Sbjct: 1019 NGEIDIIARVK-------------------------------ERSETEVLLYFAVRDTGI 1047
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GI + R+F F QAD+ST+R +GGTG+GL+ISK LAELMGG++ S GSTF F
Sbjct: 1048 GITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWF 1107
Query: 1307 SATLKHSYKDISGDSSRSLTEALPTA-FKGMKAILVDGRPVRSAVTRYHLKRLGILLQVV 1131
+A + G + LP+ +G + ++VD +A T G+ QV
Sbjct: 1108 TARM--------GIGTVRKRRLLPSPDLRGRRVLVVDDND--NARTVLADLMAGMTFQVT 1157
Query: 1130 NNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQLLNHLREQKNGQLSDGHK 957
+ ++A AA + I+ ++ WR P D ++ +HL D
Sbjct: 1158 TRASG-LEAVDEVKRAAMAGTPYEIVLLD---WRMPGMDGIETAHHLMALG----LDPAP 1209
Query: 956 VVLLVTSEADKDKYGSI----FDIVMCKPIRASTIASSIQQLLKVEIAERKD---NQNRP 798
+L+VT+ ++ I + V+ KP+ AS + +I +L + AE +D +
Sbjct: 1210 RLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIMRLFGCQPAEPRDVDGGHSSS 1269
Query: 797 SFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFM 618
+ G IL+V+DN +N +VA L G V + G A++ ++ + +D M
Sbjct: 1270 EMHLETIRGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVR-RNAYDMVLM 1328
Query: 617 DVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEE 438
D+QMP MDG AT +IR +L + HLP++AMTA+ +Q +
Sbjct: 1329 DMQMPVMDGVAATREIR------------RLGQFD-------HLPIVAMTANAMQRDRDR 1369
Query: 437 CIKSGMDGYVSKPFDEEQLYQAVSRLV 357
C+ +GM+ +++KP D +QL+ A+ R +
Sbjct: 1370 CLDAGMNDFITKPIDPDQLWAALLRWI 1396
>ref|ZP_01152331.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Halorhodospira halophila SL1]
gb|EAR45861.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Halorhodospira halophila SL1]
Length = 832
Score = 213 bits (543), Expect = 3e-53
Identities = 185/631 (29%), Positives = 273/631 (43%), Gaps = 10/631 (1%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYA 2061
V +D ++++ + QAE A AKS+FLA SHEIRTP+N V Q+D+
Sbjct: 96 VYDDLTEIKQAQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLLETSLDKRQQDHL 155
Query: 2060 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELA 1881
R L+ +IND+LD +KIE+G+LEL+ FDL ++D + +LF K +EL
Sbjct: 156 NKVLSSSRMLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELV 215
Query: 1880 VFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAM 1701
+ +P V LVG++++ T+ V L N+
Sbjct: 216 YSLPPQIPCV--------------LVGDSLRITQ-----VLTNLLSNATK---------F 247
Query: 1700 NGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRV 1521
+GG VE G + + +D V
Sbjct: 248 TPEGGEVEM----------GIQLVE----------------------------PPKADSV 269
Query: 1520 TLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFT 1341
TL + DTG+G+ + R+F F QAD+ST+R YGG+G+GL IS+ L E MGG + T
Sbjct: 270 TLRFFVRDTGIGMSEEQLGRLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALEAT 329
Query: 1340 SHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHL 1161
S P GSTF F TL G T P I+ D P R + L
Sbjct: 330 SKPGQGSTFAFELTLP------LGTPQAPATLHCPKTEGRHVLIVDDHEPTRETLREMLL 383
Query: 1160 KRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP-----ETDVQLLNHL 996
+ + N A+ K A R FI D+ P + L
Sbjct: 384 HCHFEVEEATNGEEAIEKVI------ASERRDDPFDFILMDWMMPGGMSGSETCRALEAC 437
Query: 995 REQKNGQLSDGHKVVLLVTS--EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAE 822
R+ +G L+ VL+V++ + D + ++ KPI A+ + Q LL+ E +
Sbjct: 438 RQ--SGDLAQTRPPVLMVSAYDPSQIDLPEGLTRELLSKPITANVL---YQALLRAERGD 492
Query: 821 RKDNQNRPSFLRS-LLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ- 648
R N S + L G IL+ +DN+ N VA+ L+K GA V V +G +A+
Sbjct: 493 RAANMGPESMGHTPNLAGYRILIAEDNETNQEVASLLLEKTGAQVQVVNNGAEALEAAHE 552
Query: 647 -PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
PP D MD+QMP +DGFEAT ++R+ A Y PVLA+
Sbjct: 553 APP---DLILMDLQMPVLDGFEATRRLRE---------------------AGYGGPVLAL 588
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLY 378
+A V + + +GM +++KP D EQLY
Sbjct: 589 SAAVTEGDQQRARAAGMGAHIAKPIDREQLY 619
>ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina baltica OS145]
gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina baltica OS145]
Length = 868
Score = 212 bits (539), Expect = 1e-52
Identities = 173/643 (26%), Positives = 278/643 (43%), Gaps = 4/643 (0%)
Frame = -2
Query: 2270 IAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXX 2091
I +Y + +ME+ K AE A+VAK +FLA SHEIRTP+N +
Sbjct: 177 IIGSYYDISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKT 236
Query: 2090 XXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSS 1911
QK Y + +AL+ +IND+LD +KI+AGKL +E +PFDL+ ++ + +F+
Sbjct: 237 QLSEKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAY 296
Query: 1910 KSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM 1731
K+ +K +E + N+P I T L G+ ++
Sbjct: 297 KAYDKDLEFII----NLPA----------NIPTRLFGDPLRL------------------ 324
Query: 1730 EANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGE 1551
NQVL +N ++ T +G N
Sbjct: 325 --NQVL---VNLVSNAIKFTEDGEINV-------------------------------AV 348
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
++D+V L IS+ DTG+G+ + + +F F QADSST+R YGGTG+GL+IS+ L
Sbjct: 349 TLLDKNTDKVWLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYGGTGLGLAISRRLI 408
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
+LMGG I TS GSTF TL + + S + L +G + + +D
Sbjct: 409 QLMGGDIGVTSGVGQGSTFYIELTLP-----MQPEQDDSHHQYLIQKLRGKRVLAIDDNL 463
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETDV 1014
+ + L+ + ++V + E +L ++ WR P D
Sbjct: 464 STREMIQEMLRSYQVDVRVCRTAEQALDIL------REDLEPYDVLLVD---WRLPGMDG 514
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLV---TSEADKDKYGSIFDIVMCKPIRASTIASSIQQL 843
L+ + S+ K++L E + + ++ KP A+T+ S+
Sbjct: 515 --LSLCQRVYQSLASEAPKMILATGYYAEEMSEQAAAAGISDILSKPFTATTLGHSLATT 572
Query: 842 LKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
L + L + G IL+V+DN++N +VA LK G V E G+ A
Sbjct: 573 LYKRDDSISSKDAPATNLPDAIQGAPILLVEDNEINQQVALELLKSQGFKVDIAEHGQAA 632
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
+ ++ ++ MD+QMP MDG A +IR S LP
Sbjct: 633 LDAIEQK-QYALVLMDIQMPVMDGLTAAKKIR-------------------SYYDYKQLP 672
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVV 354
+LAMTA+ + E + +GM G+++KP DE+QL +A+ + V
Sbjct: 673 ILAMTANAMSGDEERSLSAGMQGHIAKPIDEKQLIKAIIKWCV 715
>gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
psychrerythraea 34H]
ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
psychrerythraea 34H]
Length = 1683
Score = 211 bits (538), Expect = 1e-52
Identities = 177/636 (27%), Positives = 281/636 (44%), Gaps = 17/636 (2%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K ++ A AKS FLA SHEIRTPMN + K+Y +
Sbjct: 933 EAKRISDDASKAKSDFLANMSHEIRTPMNAIMGMSHLALGCELDRKPKNYVTKVYKAAES 992
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L+ +IND+LD +KIEAGKL++E + F L D+ ++ K+ EK +EL + +VP
Sbjct: 993 LLGIINDILDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLKAGEKNLELLFDISPDVP- 1051
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVES 1674
NL G+ ++ NQ+L +N G V+
Sbjct: 1052 -------------VNLKGDPLRL--------------------NQIL---INLAGNAVKF 1075
Query: 1673 TANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDT 1494
T G N + S D + L S++D+
Sbjct: 1076 TEQGQV---------------------------VISVNVVTNVSTSHCDDINLEFSVKDS 1108
Query: 1493 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTF 1314
G+G+ + Q ++F F QADSST+R YGGTG+GL+ISK L ELM GQI S GS F
Sbjct: 1109 GIGMDDEQQKKLFQSFSQADSSTTRKYGGTGLGLTISKKLVELMNGQIWLESKAGEGSCF 1168
Query: 1313 TFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV 1134
+F+ TL+ +S L E + + ++VD L
Sbjct: 1169 SFTTTLQ-----VSDVIDNRLVEQQKSFLADKRILIVDDN-----------------LLA 1206
Query: 1133 VNNMNAVVKAFPGQNGAAGSREKASIL---------FIESDFWRPETD-VQLLNHLREQK 984
++ +++++K+F AA S E+A L FI D+ P+ D ++ + ++ Q
Sbjct: 1207 LDVLSSILKSFHCHVVAANSGEEAIELVKQATLTFDFIMLDWNMPDLDGIETYHIIKSQN 1266
Query: 983 NGQLSDGHKVVLLVTSEADK----DKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERK 816
N Q +LVTS A+ D+ + V+ KP+ +S+I + +L E
Sbjct: 1267 NYQ----DNQFILVTSNANDNEAVDQLKKRINSVLVKPVTSSSIFDEMMRLNGDEAYSNT 1322
Query: 815 DNQNRPSFL---RSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQP 645
R L + L G IL+V+DN++N +A LK+ +V E+G A+
Sbjct: 1323 REMKRDDELIQNQQHLSGAKILLVEDNELNQELALELLKQSNIDVELAENGAIAVEKFSS 1382
Query: 644 PHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTA 465
H FD MD+QMP MDGF AT IR+ ++ +P++AMTA
Sbjct: 1383 RH-FDGILMDLQMPVMDGFTATKIIRE---------------------SDSSIPIIAMTA 1420
Query: 464 DVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ + + E+ + SGM+ +++KP + ++ +++ V
Sbjct: 1421 NAMVSDKEKVLASGMNDHITKPINVNTMFATIAKWV 1456
>ref|ZP_00419367.1| PAS [Azotobacter vinelandii AvOP]
gb|EAM04350.1| PAS [Azotobacter vinelandii AvOP]
Length = 1030
Score = 211 bits (537), Expect = 2e-52
Identities = 173/626 (27%), Positives = 270/626 (43%), Gaps = 10/626 (1%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R + E K AE A KS FLA SHEIRTPMN + Q+++ + A
Sbjct: 274 RALAEAKELAEEATRMKSDFLANMSHEIRTPMNVIMGMTQLALDSGLDERQRNFVEKAHD 333
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
R+L+ +IND+LD +KIEAGK+ E V F L S+ D + L K++EK +EL +
Sbjct: 334 AARSLLGIINDILDFSKIEAGKMRFEQVDFQLESVTDHLADLSVLKAQEKGLELLFDIAT 393
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
+VP T L+G+ ++ QVL ++
Sbjct: 394 DVP--------------TALIGDPLRL--------------------GQVLSNLLDNA-- 417
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
++ T+ G E D R V L
Sbjct: 418 -IKFTSRGEITLRIRKECEDERG-------------------------------VRLRFE 445
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ DTG+G+ + ++F F QADSSTSR YGGTG+GL+I K L +M G+I S P V
Sbjct: 446 VRDTGIGLNETQRRKLFRAFTQADSSTSRQYGGTGLGLAICKHLVAMMDGEIGVDSSPGV 505
Query: 1325 GSTFTFSATLKH--SYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRL 1152
GSTF F A + + +++ DS+ L GM+ ++VD + L L
Sbjct: 506 GSTFHFDARFERQANQRELLADSADLL---------GMRVLVVDDNASALEIFAGMLSAL 556
Query: 1151 GILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQ 975
+ +N ++ +E + D+ P D VQ + +R +
Sbjct: 557 RFAVTTADNAPQAIRLL-----ERAQQEDNPYRLVIMDWLMPGMDGVQAVGAIRAAP--R 609
Query: 974 LSDGHKVVLLVTSEADK--DKYGSI-FDIVMCKPIRASTIASSI----QQLLKVEIAERK 816
+++ V++ + D+ ++ G + + ++ KP+ S++ I + ++ RK
Sbjct: 610 IAETPLFVMVTSYGRDELLERLGKVPVEGLLVKPVTPSSLLDGILDACSRRMRTAPNSRK 669
Query: 815 DNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR 636
++ R L G ++L+V+DN VN +A L G V G +A+ + H
Sbjct: 670 ALESEAEQAREALRGVHLLLVEDNPVNQEMAMELLATAGIRVDVANDGAEAVGKVM-AHA 728
Query: 635 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 456
+D MD QMP MDGFEAT +IR+ L LP+LAMTA +
Sbjct: 729 YDGVLMDCQMPVMDGFEATRRIRRAGL--------------------VDLPILAMTASTM 768
Query: 455 QATYEECIKSGMDGYVSKPFDEEQLY 378
E C+ +GM Y++KP D QL+
Sbjct: 769 AGDRERCLAAGMHAYIAKPIDVAQLF 794
>ref|YP_470639.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli CFN 42]
gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
hybrid protein [Rhizobium etli CFN 42]
Length = 1133
Score = 211 bits (536), Expect = 2e-52
Identities = 191/659 (28%), Positives = 285/659 (43%), Gaps = 32/659 (4%)
Frame = -2
Query: 2249 YDKVTEDCRKMEELK---TQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXX 2079
+ VTE + EEL+ ++AEAAD AKS+FLA SHEIRTPMNGV
Sbjct: 568 FTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT 627
Query: 2078 TQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSRE 1899
QK + G AL+T+IND+LD +KI+AG+++L FDL ++DV +L SS + E
Sbjct: 628 RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAE 687
Query: 1898 KCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQ 1719
K IEL V ++P VIGD RFRQI+TNLV
Sbjct: 688 KNIELLVRAAPDLPAAVIGDAGRFRQIVTNLV---------------------------- 719
Query: 1718 VLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQ 1539
G V+ T G GF+AA GE
Sbjct: 720 ---------GNAVKFTERGHVFVDVGFQAA----------------------AGGE---- 744
Query: 1538 SDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMG 1359
+ +I IEDTG+GIP + D VF F Q D+S++R + GTG+GL+I+ L +L G
Sbjct: 745 -----IIASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFG 799
Query: 1358 GQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSA 1179
G I+ S GS FT + + ++R + LP +G + ++VD V
Sbjct: 800 GYINAESEWGRGSVFTVNLPFAVA-------AARLEPKPLPINVQGARILVVDDNEVNRR 852
Query: 1178 VTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNH 999
+ L G F G A G +IL +D V L H
Sbjct: 853 ILTEQLSLWG---------------FDGV-AAEGGGTGLAILEAAADLGVTVDAVVLDYH 896
Query: 998 LREQKNGQL-----SDGHKVVLLVTSEADKDKYGSIFDIV-------MCKPIRASTI--- 864
+ + + +D V L + D G+ + + KP RA+ +
Sbjct: 897 MPDMNGANVARRLRADPRFVDLPIIFLTSMDISGTEKEFAALNGQAHLMKPARANVLRNT 956
Query: 863 ------ASSIQQLLKVEIAERKDNQNRPS-FLRSLLVGK-------NILVVDDNKVNLRV 726
A ++Q + EIA + P+ +LV + ++LV +DN+VN V
Sbjct: 957 VVEVVRARRVKQASEAEIARLQTEAAVPAPEPAPMLVPQKRADEFVDVLVAEDNEVNQIV 1016
Query: 725 AAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKAN 546
L+ G + V++G++A++ + H MDV MP M+G EAT IR+ E
Sbjct: 1017 FTQILQSSGLSFLVVKNGEEAVAAWE-SHTPRIIMMDVSMPVMNGHEATRTIREREKGQG 1075
Query: 545 EERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
+ +P++ +TA +++ E C+ +GMD Y+SKP E L + +
Sbjct: 1076 -----------------HRVPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKI 1117
>gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina loihiensis L2TR]
ref|YP_156114.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina loihiensis L2TR]
Length = 866
Score = 210 bits (534), Expect = 4e-52
Identities = 172/646 (26%), Positives = 286/646 (44%), Gaps = 7/646 (1%)
Frame = -2
Query: 2270 IAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXX 2091
I +Y + +ME+ K AE A+ +K +FLA SHEIRTP+N +
Sbjct: 177 ILGSYYDISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKT 236
Query: 2090 XXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSS 1911
QK Y + +AL+ +IND+LD +KI+AGKL +E +PFDL+ ++ + +F+
Sbjct: 237 ELTQKQKRYIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAY 296
Query: 1910 KSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM 1731
++ +K +E + + N+P T L+G+ ++
Sbjct: 297 RAYDKDLEFIINLPANIP--------------TRLIGDPLRL------------------ 324
Query: 1730 EANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGE 1551
NQVL +N ++ T +G N
Sbjct: 325 --NQVL---VNLISNAIKFTEDGEINV-------------------------------AV 348
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
N S D V L IS+ DTG+G+ + + +F F QAD+ST+R YGGTG+GL+IS+ L
Sbjct: 349 NLLDSSRDNVLLRISVTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLI 408
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
LMGG I TS GSTF L + + S + L KG++ + +D
Sbjct: 409 LLMGGDIGVTSAAGQGSTFYIEVELP-----LQTEQDNSHHQYLLQKLKGVRILAIDDNL 463
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-V 1014
+ L+ + ++V ++ F + + D+ P D +
Sbjct: 464 STREMLYEMLRSYQVDVKVCRTAEQALQVFQ-----LSVEDNNPYQLVLVDWRLPGMDGL 518
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLVTSE--ADKDKYGSIFDIVMCKPIRASTIASSIQQ-L 843
+ + E+ + + +E ++K K + DI+ KP AST+ S+ L
Sbjct: 519 EFCQKITERYAEDIRPKMTLATGYYAEELSEKAKQAGVNDIIS-KPFTASTLGRSLTSTL 577
Query: 842 LKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
+ E+++ D + S+L ILVV+DN++N +VA L + V VE+G+ A
Sbjct: 578 FQRELSDADDADSGDGIPESILRAP-ILVVEDNEINQQVAREILSSHKFKVDIVENGQLA 636
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH-- 489
+ + + + MD+QMP MDG +A IR A+++
Sbjct: 637 VEAVHNKN-YSLVLMDIQMPVMDGLKAAQTIR----------------------ADFNYQ 673
Query: 488 -LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVV 354
LP+LAMTA+ + E + +GM G+++KP DE+QL +A+ + V
Sbjct: 674 QLPILAMTANAMSGDEERSLAAGMQGHIAKPIDEQQLIKAIIKWAV 719
>gb|AAZ44767.1| PAS [Dechloromonas aromatica RCB]
ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
Length = 1439
Score = 207 bits (528), Expect = 2e-51
Identities = 176/625 (28%), Positives = 278/625 (44%), Gaps = 4/625 (0%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R+ + + AE+A AK+ FLA SHEIRTPMN + QK+Y
Sbjct: 698 READRARATAESAAAAKADFLANMSHEIRTPMNAIIGMTHLALQTELNSRQKNYLTKVDN 757
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
+ L+ +IND+LD +KIEAG + E PF L + ++ + + S K+RE+ +EL + D
Sbjct: 758 AAKGLLGIINDILDLSKIEAGMMHFEHAPFSLDASLERLSDMCSLKARERGLEL---LYD 814
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
P+V L+G++++ QVL +N G
Sbjct: 815 IAPEVP-----------DQLIGDSLRL--------------------GQVL---LNLVGN 840
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
++ T G T++ A+R N V L
Sbjct: 841 AIKFTEAGEI-TVTVKLLANRENE------------------------------VDLGFE 869
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ DTG+G+ ++ Q ++F+ F QAD+ST+R YGGTG+GLSI K + EL GG I +S P +
Sbjct: 870 VIDTGIGMNVEQQSQLFSAFTQADTSTTRKYGGTGLGLSICKRIVELQGGSIGVSSQPGI 929
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
GS FTF + + +G R LP ++A++VD V + L GI
Sbjct: 930 GSRFTFQLQFGRATEQ-TGTPRRI---GLP---NNLRALIVDDSHGACEVFLHMLTVFGI 982
Query: 1145 LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSD 966
V + A + AA + + +L I D+ P+ D L Q NG +
Sbjct: 983 DCHAVRSAPAALLELA---AAAETGQAYGLLII--DWKMPDMDGVELVEKISQSNG--PE 1035
Query: 965 GHKVVLLVTSEADKDKYGSI----FDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRP 798
+++ T+ ++ ++ ++ KP S++ SI L E + P
Sbjct: 1036 RTAAIVMATAYDHEELLAALGKHPVGAILSKPATPSSLFDSIMVALHREPTTQMVPNITP 1095
Query: 797 SFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFM 618
+ L G++IL+V+DN+VN +A L G V E+G+ AI ++ + +D M
Sbjct: 1096 TMLSEQFAGRHILLVEDNEVNRELAEEMLGNIGLLVDTAENGQQAIDRIR-QNAYDLVLM 1154
Query: 617 DVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEE 438
D MP MDG+ AT IR ELK + LP++AMTA+ + + E
Sbjct: 1155 DCHMPVMDGYTATEYIRH-ELKLPQ------------------LPIIAMTANALHSDREH 1195
Query: 437 CIKSGMDGYVSKPFDEEQLYQAVSR 363
C+ GMD ++ KP D L+ + R
Sbjct: 1196 CLAVGMDDHIPKPIDVAVLHATLLR 1220
>ref|ZP_00806419.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Rhodopseudomonas palustris BisB5]
gb|EAO84045.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Rhodopseudomonas palustris BisB5]
Length = 650
Score = 204 bits (520), Expect = 2e-50
Identities = 172/643 (26%), Positives = 288/643 (44%), Gaps = 11/643 (1%)
Frame = -2
Query: 2276 YSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXX 2097
+ + A R + E ++ L+ A+A AKS+ LA ASHEIRTP+NG+
Sbjct: 101 WELKDAEERARTLLESRGELLTLRDDADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLL 160
Query: 2096 XXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLF 1917
Q Y + + G AL++LI+++LD +KI+AGK+EL+ PF L +L++D+ L
Sbjct: 161 DTTLTPEQATYVRAVKTSGDALLSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELL 220
Query: 1916 SSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENS 1737
+ +++ + IE+A +V + +P VI G+A +
Sbjct: 221 APRAQARAIEIAAYVDERLPAQVI--------------GDAARL---------------- 250
Query: 1736 NMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXE 1557
QVL +N G ++ T++G ++
Sbjct: 251 ----RQVL---LNLAGNAIKFTSSGGVALIA---------------------------EP 276
Query: 1556 GENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKC 1377
GE + D + I DTG+GI +AQ RVF F QAD +RNYGGTG+GLSIS+
Sbjct: 277 GERDGEID-------LLIRDTGIGIAPEAQARVFREFEQADDGIARNYGGTGLGLSISER 329
Query: 1376 LAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDG 1197
+ MGG+I S P +G+TFT S L + D + ++ P G ++
Sbjct: 330 IVSGMGGRIVLHSRPGIGTTFTVSIPLA-----AADDPAAAMAFKAPD-LAGQTILIAAP 383
Query: 1196 RPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD 1017
+ + + + + L+R +VV+++ A P +A + I++ F E
Sbjct: 384 QTIEAQLVAHRLQRWNAETRVVSDLAAARVLLPDHAWSA--------ILIDAGFGVTEAA 435
Query: 1016 VQLLNHLREQKNGQLSDGHKVVLLVTSEADK--DKYGSIFDIVMCKPIRASTIASSIQQL 843
L + +L ++V+L S + K + F + KP+RA+++A+ +
Sbjct: 436 ALAL-------DAKLHATQRIVMLNPSIRAELLPKLPAAFTGYLVKPLRAASLAARLGGA 488
Query: 842 LKVEIAERKDNQNRPSFL---RSLLVGK--NILVVDDNKVNLRVAAAALKKYGANVSCVE 678
L A + + P ++ VG+ +ILV +DN +N + + L K G + +
Sbjct: 489 LIDTAAPGIADSDTPGLAAPDQTAQVGRRLSILVAEDNDINALLIRSLLTKLGHDAVIAD 548
Query: 677 SGKDAISLLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
G+ A+ + FD MDVQMP +DG A+ QIR E + R
Sbjct: 549 DGEQALQSWRAASADGAPFDLVLMDVQMPLLDGIAASRQIRTYEAERQSRR--------- 599
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
P+LA+TA+ + C+ +GMDG++ KP D ++L
Sbjct: 600 -------TPILALTANSLAEDRAACLAAGMDGFLVKPLDRDRL 635
>gb|EAN29681.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00606024.1| PAS [Magnetococcus sp. MC-1]
Length = 1303
Score = 201 bits (511), Expect = 2e-49
Identities = 178/640 (27%), Positives = 272/640 (42%), Gaps = 19/640 (2%)
Frame = -2
Query: 2225 RKMEELKTQ-----AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYA 2061
RK +E Q A+ A+ AKS FLA SHEIRTPMN + Q+ Y
Sbjct: 544 RKQQEQVLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMSHLAIRTSNDPRQRAYL 603
Query: 2060 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELA 1881
Q ++L+ +IND+LD AK+EAGK+E+E VPF+L D+V+ ++ + K E
Sbjct: 604 QKIHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNL----DEVLDTLATLTSVKADEKG 659
Query: 1880 VFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAM 1701
+ + R + +VG+A++ NQ+L +
Sbjct: 660 LALIFR----------RHLDLPQRVVGDALRL--------------------NQIL---L 686
Query: 1700 NGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRV 1521
N G V+ T G+ Q D++
Sbjct: 687 NLTGNAVKFTEQGSV-------------------------------VVNVEKVQQQGDQI 715
Query: 1520 TLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFT 1341
L S++DTG+G+ ++F F QADSS +R YGG G+GL+I K L LM G++S
Sbjct: 716 VLRFSVQDTGIGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQLVNLMAGELSVQ 775
Query: 1340 SHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHL 1161
S P VGS FTF+ + + + +P +G +L DG + V L
Sbjct: 776 STPEVGSCFTFTVPFTVVQEQV-------VDAIVPQGIRGRVVLLADGSALARRVVAEML 828
Query: 1160 KRLGILLQVVNNMNAVVKAFPGQNG------------AAGSREKASILFIESDFWRPETD 1017
K +G + + ++ A + G A G+ A+I ++ P
Sbjct: 829 KHMGCDVLEAEQVEQLLTALQAKIGPDMVLLDSSMVDAQGAHAYAAIRQADAGGACPV-- 886
Query: 1016 VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLK 837
L+ H + G + +L DK + G + KP+ S + + QLL
Sbjct: 887 --LVMH---------THGDREQVLAWMAKDK-QLGHVQ-----KPLTPSRLLEGMVQLLV 929
Query: 836 VE--IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
E + + + + LL G NIL+V+DN VN VA L G V+ ++G A
Sbjct: 930 DEGRVTGLSGETDVIARYKPLLTGANILLVEDNGVNQEVAFELLSMVGVEVTVADNGSQA 989
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
+S L+ FD MD+QMP MDG+ AT IRQ LP
Sbjct: 990 LSFLEQAS-FDLVLMDIQMPVMDGYAATQAIRQ--------------------NMSLTLP 1028
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++AMTA V++A + GM+G+VSKP + +LY+ + R
Sbjct: 1029 IIAMTATVMEADQARALAVGMNGHVSKPIEPHKLYEMLLR 1068
>ref|ZP_00638792.1| PAS [Shewanella frigidimarina NCIMB 400]
gb|EAN74456.1| PAS [Shewanella frigidimarina NCIMB 400]
Length = 1632
Score = 201 bits (511), Expect = 2e-49
Identities = 198/787 (25%), Positives = 329/787 (41%), Gaps = 39/787 (4%)
Frame = -2
Query: 2579 IGYLGGAFDVESLVE---------NLLSKLAG-------NQDIVVNVYDVTNASDAMVLY 2448
+GYLG A +++ +++ N LSK A N D+ + + AM Y
Sbjct: 740 VGYLGVAVNIDQMLKQQEELVSASNQLSKAAEVAELGIWNLDLDTDNLQWNDRMFAMYDY 799
Query: 2447 GPSSLDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSI 2268
+ ++ + + H D E+ + L +P+ + + + Y
Sbjct: 800 PLALTEKGLNYQHWQKRVHPDDIEMAELALQQAIDLNIPYEPTFRIITSS---NQIRYIH 856
Query: 2267 AAAYSRYDK---------VTEDCRKMEEL-------KTQAEAADVAKSQFLATASHEIRT 2136
A A YDK + D + EL K A+AA AKS FLA SHEIRT
Sbjct: 857 AGAQISYDKTGKPVRVVGINRDITEQRELEQTLRLAKQAADAASAAKSAFLANMSHEIRT 916
Query: 2135 PMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPF 1956
PMN V Q DY A+ ++L+ L+ND+LD +KI+AGKLEL+ PF
Sbjct: 917 PMNAVLGMLQLIQHSDMSRQQADYVTKAENAAKSLLGLLNDILDFSKIDAGKLELDLHPF 976
Query: 1955 DLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTER 1776
L +LM ++ + ++ + +E+ + +P ++
Sbjct: 977 QLETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLI------------------------ 1012
Query: 1775 GHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXX 1596
E + QVL +N G ++ T+ G
Sbjct: 1013 ----------EGDELRLRQVL---LNLAGNAIKFTSEG---------------------- 1037
Query: 1595 XXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRN 1416
G N+ +++V L ISI D+G+GI + ++F F+QA+SSTSR
Sbjct: 1038 ---------HVIVGVQCNECTANQVNLTISITDSGIGISPEQSSKIFQGFVQAESSTSRR 1088
Query: 1415 YGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP 1236
+GGTG+GL+I+K L ELMGG++S +SH GS F F T + ++ + L
Sbjct: 1089 FGGTGLGLAITKSLVELMGGELSLSSHVGEGSRFWFELTF--NIVEVKNND-------LD 1139
Query: 1235 TAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASI 1056
G ++VD + + L G + +N + A+ +
Sbjct: 1140 IDLLGKNILIVDDSKMSRKILSKTLMAHGAYVNEAHNSKQAINLIEQSLNASSHYD---- 1195
Query: 1055 LFIESDFWRPETD-VQLLNHLREQKNGQLSDGHKVVLLV-----TSEADKDKYGSIFDIV 894
I D+ P+ + ++ NH+ Q +++L E K F +
Sbjct: 1196 -VIIMDWRMPDMNGLETANHI--QAMFPAGKAPAIIMLTAYGAEVMEQTKQYRQQPFVSM 1252
Query: 893 MCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAA 714
+ KP+ A+ + ++ + + + + Q+R +L G +LVV+DN++N +V
Sbjct: 1253 LTKPVTANLMLEAVYRAINGLV---QPVQSR-KITHLVLKGVRVLVVEDNQLNRQVIDEL 1308
Query: 713 LKKYGANVSCVESGKDAIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER 537
L+ GA V+ + G + + + + ++FD MD+QMP MDG EAT IR + R
Sbjct: 1309 LRLQGAVVTLAKDGIEGVDWVTKSNNQFDIVIMDMQMPVMDGLEATHLIRA------DGR 1362
Query: 536 KNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
N LP+LAMTA+ A C+++GMD ++ KP D L + L
Sbjct: 1363 FN-------------DLPILAMTANASLADKTLCLEAGMDDHIGKPIDMTLLLPCMLSL- 1408
Query: 356 VGTTDSA 336
+G +SA
Sbjct: 1409 LGQDNSA 1415
>gb|AAG57899.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli
O157:H7 EDL933]
ref|NP_289340.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli
O157:H7 EDL933]
pir||G85929 hypothetical protein barA [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
Length = 918
Score = 200 bits (509), Expect = 3e-49
Identities = 178/647 (27%), Positives = 280/647 (43%), Gaps = 14/647 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 259 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLT 318
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+D+ T + L+ +INDVLD +K+EAGKL LE++PF LRS +D+VV+L
Sbjct: 319 LKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTL 378
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ S +K +EL + + +VP N++G+ ++
Sbjct: 379 LAHSSHDKGLELTLNIKSDVPD--------------NVIGDPLRL--------------- 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
Q++ N G ++ T NG + L A
Sbjct: 410 -----QQII---TNLVGNAIKFTENGNIDILVEKRALS---------------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +V + + I DTG+GIP + Q R+F F QAD+S SR +GGTG+GL I++
Sbjct: 440 ---------NTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQ 490
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L MGG ISF S P+ GSTF F L + I G S++ L G + V
Sbjct: 491 KLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLA--------GKRLAYV 542
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + T L +++ V P + + +L I F P
Sbjct: 543 EPNSAAAQCT----------LDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPL 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQ 846
T + H R K ++D + L ++ + +K + KP+ + + ++
Sbjct: 593 T----MQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTXTRLLPAL-- 646
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
E K N P S L ++ VDDN NL++ A L+ +V +SG
Sbjct: 647 ---TEFCHHKQNTLLPVTDESKL-AMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQ 702
Query: 665 AIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ Q P FD MD+QMP+MDG A I Q+ +
Sbjct: 703 AVERAKQMP--FDLILMDIQMPDMDGIRACELIHQL-------------------PHQQQ 741
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
PV+A+TA + E+ + +GM Y++KP +EE+L+ + R G+
Sbjct: 742 TPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGS 788
>gb|AAA20829.1| pectate lyase
Length = 896
Score = 200 bits (509), Expect = 3e-49
Identities = 184/645 (28%), Positives = 277/645 (42%), Gaps = 19/645 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 230 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 289
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+++IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 290 QKSELTPRQYDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 349
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P + GDP R RQILTNLV NA+KFT +G + R L +
Sbjct: 350 LAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTRQGTIVARAMLEDE 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ A R+ G G + D R +Q F
Sbjct: 410 TEEHAQL-----------RISVQDTGI-----GLSSQDVRALFQAF-------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ +IS + G G+ GL ISK
Sbjct: 440 -----SQADN-----SISRQPGGTGL----------------------------GLVISK 461
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
L E MGG+I S P GS F S L + +D E A +G++A +++
Sbjct: 462 RLIEQMGGEIGVDSTPGEGSEFWISLNLPKARED--------REETANQALEGLRAAVLE 513
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS-----ILFIESDF 1035
+ + L+ G+ V N+ ++ NG + E +L + +
Sbjct: 514 HHDLARQALEHQLEDCGLQTVVFTNLENLL------NGVTAAHETPQAIDLVVLGVTALE 567
Query: 1034 WRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI---VMCKPIRASTI 864
PE +L H+ + +N KV++L + S+ D+ + KP
Sbjct: 568 ISPE---RLRQHIWDLENLNC----KVMVLCPTTEHALFQMSVHDVYTQLQAKP----AC 616
Query: 863 ASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSC 684
+Q+ L +A R + L S +L VDDN NL + L+ GA V
Sbjct: 617 NRKLQKALSELVAPRAVRTDVALPLSSR--APRVLCVDDNPANLLLVQTLLEDMGAEVVA 674
Query: 683 VESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGST 504
V+ G A+S +Q FD MDVQMP MDG +AT IR E + N+
Sbjct: 675 VDGGYAAVSAVQ-QEAFDLVLMDVQMPGMDGCQATEAIRAWETERNQT------------ 721
Query: 503 TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
LP++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 722 ----SLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVV 762
>dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli W3110]
gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli K12]
ref|YP_311777.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
Ss046]
ref|YP_404517.1| sensor-regulator [Shigella dysenteriae Sd197]
ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli W3110]
gb|AAN81797.1| Sensor protein barA [Escherichia coli CFT073]
dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7]
ref|NP_417266.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Escherichia coli K12]
ref|NP_311673.1| BarA [Escherichia coli O157:H7]
sp|P0AEC5|BARA_ECOLI Sensor protein barA
sp|P0AEC6|BARA_ECOL6 Sensor protein barA
sp|P0AEC7|BARA_ECO57 Sensor protein barA
ref|NP_755227.1| Sensor protein barA [Escherichia coli CFT073]
gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
ref|ZP_00734532.1| COG0642: Signal transduction histidine kinase [Escherichia coli
53638]
ref|ZP_00718437.1| COG0642: Signal transduction histidine kinase [Escherichia coli
E110019]
ref|ZP_00714910.1| COG0642: Signal transduction histidine kinase [Escherichia coli B7A]
ref|ZP_00712618.1| COG0642: Signal transduction histidine kinase [Escherichia coli B171]
ref|ZP_00706827.1| COG0642: Signal transduction histidine kinase [Escherichia coli HS]
ref|ZP_00700781.1| COG0642: Signal transduction histidine kinase [Escherichia coli
E24377A]
ref|ZP_00696496.1| COG0642: Signal transduction histidine kinase [Shigella boydii BS512]
ref|ZP_00923614.1| COG0642: Signal transduction histidine kinase [Escherichia coli
101-1]
gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
Ss046]
dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
Length = 918
Score = 200 bits (508), Expect = 4e-49
Identities = 178/647 (27%), Positives = 280/647 (43%), Gaps = 14/647 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 259 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLT 318
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+D+ T + L+ +INDVLD +K+EAGKL LE++PF LRS +D+VV+L
Sbjct: 319 LKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTL 378
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ S +K +EL + + +VP N++G+ ++
Sbjct: 379 LAHSSHDKGLELTLNIKSDVPD--------------NVIGDPLRL--------------- 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
Q++ N G ++ T NG + L A
Sbjct: 410 -----QQII---TNLVGNAIKFTENGNIDILVEKRALS---------------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +V + + I DTG+GIP + Q R+F F QAD+S SR +GGTG+GL I++
Sbjct: 440 ---------NTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQ 490
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L MGG ISF S P+ GSTF F L + I G S++ L G + V
Sbjct: 491 KLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLA--------GKRLAYV 542
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + T L +++ V P + + +L I F P
Sbjct: 543 EPNSAAAQCT----------LDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPL 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQ 846
T + H R K ++D + L ++ + +K + KP+ + + ++
Sbjct: 593 T----MQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPAL-- 646
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
E K N P S L ++ VDDN NL++ A L+ +V +SG
Sbjct: 647 ---TEFCHHKQNTLLPVTDESKL-AMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQ 702
Query: 665 AIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ Q P FD MD+QMP+MDG A I Q+ +
Sbjct: 703 AVERAKQMP--FDLILMDIQMPDMDGIRACELIHQL-------------------PHQQQ 741
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
PV+A+TA + E+ + +GM Y++KP +EE+L+ + R G+
Sbjct: 742 TPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGS 788
>ref|YP_409032.1| sensor-regulator [Shigella boydii Sb227]
gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
Length = 918
Score = 200 bits (508), Expect = 4e-49
Identities = 178/647 (27%), Positives = 280/647 (43%), Gaps = 14/647 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 259 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLT 318
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+D+ T + L+ +INDVLD +K+EAGKL LE++PF LRS +D+VV+L
Sbjct: 319 LKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTL 378
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ S +K +EL + + +VP N++G+ ++
Sbjct: 379 LAHSSHDKGLELTLNIKSDVPD--------------NVIGDPLRL--------------- 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
Q++ N G ++ T NG + L A
Sbjct: 410 -----QQII---TNLVGNAIKFTENGNIDILVEKRALS---------------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +V + + I DTG+GIP + Q R+F F QAD+S SR +GGTG+GL I++
Sbjct: 440 ---------NTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQ 490
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L MGG ISF S P+ GSTF F L + I G S++ L G + V
Sbjct: 491 KLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLA--------GKRLAYV 542
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + T L +++ V P + + +L I F P
Sbjct: 543 EPNSAAAQCT----------LDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPL 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQ 846
T + H R K ++D + L ++ + +K + KP+ + + ++
Sbjct: 593 T----MQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPAL-- 646
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
E K N P S L ++ VDDN NL++ A L+ +V +SG
Sbjct: 647 ---TEFCHHKQNTLLPVTDESKL-AMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQ 702
Query: 665 AIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ Q P FD MD+QMP+MDG A I Q+ +
Sbjct: 703 AVERAKQMP--FDLILMDIQMPDMDGIRACELIHQL-------------------PHQQQ 741
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
PV+A+TA + E+ + +GM Y++KP +EE+L+ + R G+
Sbjct: 742 TPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGS 788
>ref|ZP_00725643.1| COG0642: Signal transduction histidine kinase [Escherichia coli F11]
Length = 918
Score = 200 bits (508), Expect = 4e-49
Identities = 178/647 (27%), Positives = 280/647 (43%), Gaps = 14/647 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 259 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLT 318
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+D+ T + L+ +INDVLD +K+EAGKL LE++PF LRS +D+VV+L
Sbjct: 319 LKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTL 378
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ S +K +EL + + +VP N++G+ ++
Sbjct: 379 LAHSSHDKGLELTLNIKSDVPD--------------NVIGDPLRL--------------- 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
Q++ N G ++ T NG + L A
Sbjct: 410 -----QQII---TNLVGNAIKFTENGNIDILVEKRALS---------------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +V + + I DTG+GIP + Q R+F F QAD+S SR +GGTG+GL I++
Sbjct: 440 ---------NTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQ 490
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L MGG ISF S P+ GSTF F L + I G S++ L G + V
Sbjct: 491 KLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLA--------GKRLAYV 542
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + T L +++ V P + + +L I F P
Sbjct: 543 EPNSAAAQCT----------LDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPL 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQ 846
T + H R K ++D + L ++ + +K + KP+ + + ++
Sbjct: 593 T----MQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPAL-- 646
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
E K N P S L ++ VDDN NL++ A L+ +V +SG
Sbjct: 647 ---TEFCHHKQNTLLPVTDESKL-AMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQ 702
Query: 665 AIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ Q P FD MD+QMP+MDG A I Q+ +
Sbjct: 703 AVERAKQMP--FDLILMDIQMPDMDGIRACELIHQL-------------------PHQQQ 741
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
PV+A+TA + E+ + +GM Y++KP +EE+L+ + R G+
Sbjct: 742 TPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGS 788
>ref|ZP_00728469.1| COG0642: Signal transduction histidine kinase [Escherichia coli E22]
Length = 918
Score = 199 bits (507), Expect = 5e-49
Identities = 178/647 (27%), Positives = 279/647 (43%), Gaps = 14/647 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 259 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLT 318
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+D+ T + L+ +INDVLD +K+EAGKL LE++PF LRS +D+VV+L
Sbjct: 319 LKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTL 378
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ S +K +EL + + +VP N++G+ ++
Sbjct: 379 LAHSSHDKGLELTLNIKSDVPD--------------NVIGDPLRL--------------- 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
Q++ N G ++ T NG + L A
Sbjct: 410 -----QQII---TNLVGNAIKFTENGNIDILVEKRALS---------------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +V + + I DTG+GIP + Q R+F F QAD+S SR +GGTG+GL I++
Sbjct: 440 ---------NTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQ 490
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L MGG ISF S P+ GSTF F L + I G S++ L G + V
Sbjct: 491 KLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLA--------GKRLAYV 542
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + T L +++ V P + + +L I F P
Sbjct: 543 EPNSAAAQCT----------LDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPL 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQ 846
T + H R K ++D + L ++ + +K + KP+ + + ++
Sbjct: 593 T----MQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPAL-- 646
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
E K N P S L ++ VDDN NL++ A L+ +V +SG
Sbjct: 647 ---TEFCHHKQNTLLPVTDESKL-AMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQ 702
Query: 665 AIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ Q P FD MD+QMP+MDG A I Q+ +
Sbjct: 703 AVERAKQMP--FDLILMDIQMPDMDGIRACELIHQL-------------------PHQQQ 741
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
PV+A+TA + E + +GM Y++KP +EE+L+ + R G+
Sbjct: 742 TPVIAVTAHAMAGQKENLLGAGMSDYLAKPIEEERLHNLLLRYKPGS 788
>gb|AAZ44982.1| PAS [Dechloromonas aromatica RCB]
ref|YP_283452.1| PAS [Dechloromonas aromatica RCB]
Length = 1214
Score = 199 bits (507), Expect = 5e-49
Identities = 174/633 (27%), Positives = 277/633 (43%), Gaps = 14/633 (2%)
Frame = -2
Query: 2219 MEELKTQ-AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
M EL Q AE A+++FLA SHEIRTP+N V + +Y + +
Sbjct: 563 MRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLGEREMEYVKRIEGA 622
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G+ L+ ++NDVLD +KI+AGK++LE F L L+D++ SL ++++EK + L V +
Sbjct: 623 GKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQEKNLVLEYVVAPD 682
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
+ NL G+A++ ++ + + L N+
Sbjct: 683 ATQ--------------NLRGDALRLSQ-----ILINLVSNA------------------ 705
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISI 1503
++ TA G+ + A +++ R+ L I
Sbjct: 706 IKFTAEGSITVF--IDVASNKDN-----------------------------RIELEFRI 734
Query: 1502 EDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVG 1323
+DTG+G+ + D +F F QADSS +R +GGTG+GL+ISK L E+MGG I S P VG
Sbjct: 735 QDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSVPQVG 794
Query: 1322 STFTFSATLKHSYKDISGDSSRSLTEALPTAFK--GMKAILVDGRPVRSAVTRYHLKRLG 1149
STF+F L + E P + G ++VD + +V LK+ G
Sbjct: 795 STFSFRVWL-------------GIDETKPEVLRKVGYHVLVVDDNNLARSVLSSLLKKHG 841
Query: 1148 ILLQVVNNMNAVVKAFPGQNGAAGSREKASILF--IESDFWRPETD-VQLLNHLREQKNG 978
V+ A G+ A A F I D P+ D + L H+R ++ G
Sbjct: 842 C---------TVLAAESGEAALAALHASAMTSFDCIMVDLNMPDMDGLALAQHIRSER-G 891
Query: 977 QLSDGHKVVLLVTSEADKDKYGSI---FDIVMCKPIRASTIASSIQQLLKVEIAERKDNQ 807
Q + K++++ +Y FD ++ KP+ A+ I + L E
Sbjct: 892 QST---KLIMVTGENVHSSRYRHALGDFDAIVEKPVTAARIGEVLAHL------EDDAPP 942
Query: 806 NRPSFLRSL----LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-SLLQPP 642
RP+ L + L G ILV +D N + L+ GA V ++G+ AI L
Sbjct: 943 RRPATLLPVPAAPLSGLRILVAEDVPTNQLIMRDLLESLGATVEMADNGEQAIEQLAAAG 1002
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
D MD+QMPEMDG EAT +IR + +AN +P++A+TA
Sbjct: 1003 DDIDLILMDIQMPEMDGLEATHRIRTGQKRAN-------------------IPIIALTAH 1043
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++ + SGM+ +++KP + L + R
Sbjct: 1044 ALEEERQRAAASGMNDFLTKPIEPANLINVIQR 1076
>ref|ZP_00818428.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Marinobacter aquaeolei VT8]
gb|EAO98310.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Marinobacter aquaeolei VT8]
Length = 784
Score = 199 bits (505), Expect = 9e-49
Identities = 177/640 (27%), Positives = 285/640 (44%), Gaps = 19/640 (2%)
Frame = -2
Query: 2243 KVTEDCRKMEE--LKTQAEA-----ADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXX 2085
++ ED R + + ++TQ E A+ AK+QFLA SHE+R P+ V
Sbjct: 228 QILEDTRSLRQTTIQTQGERDEAIRANHAKNQFLANVSHELRIPLQSVLGYANLLTDTPL 287
Query: 2084 XXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKS 1905
Q++Y T +L ++IND+LD + +EAGKLELEA+PFDLR ++D++ + S++
Sbjct: 288 DQEQREYVNTLLNASESLSSIINDLLDISSMEAGKLELEAIPFDLRETLNDLIHMLGSRA 347
Query: 1904 REKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEA 1725
REK + L V V +N+ PW L G+ V+
Sbjct: 348 REKGLALEVRVDENL-------PWA-------LTGDPVRI-------------------- 373
Query: 1724 NQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENS 1545
QVL +N ++ T +G + L E R+
Sbjct: 374 RQVL---LNLLSNAIKFTDSG--HVLISIEILGRKEG----------------------- 405
Query: 1544 NQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
+V L +++EDTGVGI + V+ P++Q R G G+GL+I + L +L
Sbjct: 406 ------KVRLRLAVEDTGVGINPEDIPLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVDL 459
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVR 1185
MGG + S P GSTF +L ++ + S++ ++ +G + ++VD +
Sbjct: 460 MGGSMDLESRPGEGSTFWVELSL----QEATDGSAKVRPDS--RQVQGRRVLVVDSYELS 513
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLL 1005
+T L R + + V + + A Q AG A+IL D + P+ D LL
Sbjct: 514 RKITLEMLSRYDVHIDAVRSAGEALTAL-RQAFDAGIPYDATIL----DGFVPDMDADLL 568
Query: 1004 NHLREQKNGQLSDGHKVVLLVTSE-ADKDKYGSI-FDIVMCKPIRASTIASSIQQLLKVE 831
+ + N Q ++ ++L + D + + D + K +R S + + QL +
Sbjct: 569 CR-QVRSNPQWAEMRLLILSSNPQRGDAEHFRQAGADAFLSKSLRESYLIPILNQLFTHD 627
Query: 830 IAER---------KDNQNRPSFLRSLLVGK-NILVVDDNKVNLRVAAAALKKYGANVSCV 681
+ K + S R + G+ +L+V+DN VN + L+K G V
Sbjct: 628 TQQERRFLTRFSLKTMADAGSRQREIPCGRMRVLLVEDNPVNRTLTRRLLEKLGCEVMTA 687
Query: 680 ESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
G+ A SL Q H+FD FMD MP MDG+EAT Q+R E R
Sbjct: 688 NDGQAASSLWQ-WHQFDVVFMDCVMPRMDGYEATRQLRAWETNHGRSR------------ 734
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
+PV+A+TA ++ E C ++GMD +V+KP + E L
Sbjct: 735 ----VPVVALTASAMEEDEERCRQAGMDSFVAKPVNLEML 770
>ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
Length = 763
Score = 199 bits (505), Expect = 9e-49
Identities = 178/656 (27%), Positives = 294/656 (44%), Gaps = 6/656 (0%)
Frame = -2
Query: 2282 LGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXX 2103
L +S+ + + E +E A+ A+ AKS FLA SHEIRTPMNGV
Sbjct: 205 LNFSVGVLEDTFVERDEREAALERACEDADIANQAKSDFLANMSHEIRTPMNGVIGMAEL 264
Query: 2102 XXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVS 1923
Q+ YA+T G AL+T+IND+L+ +KIEAGK+EL PF+L + ++DVV+
Sbjct: 265 IMETDLDEDQQIYAETISKSGTALLTIINDILNFSKIEAGKVELNLAPFNLLTAIEDVVT 324
Query: 1922 LFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
L S ++ K +E+ + N+P+ GD R RQ++TN++GNAVKFT+ G+V V V +
Sbjct: 325 LLSPRANAKGVEIILRYDPNLPEFFEGDVGRVRQVITNIIGNAVKFTDVGYVHVDVSGGK 384
Query: 1742 NSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXX 1563
NS + + A G G AN S FE D
Sbjct: 385 NSE-NYSLTIKVADTGIG----IPANRLEAVFSAFEQVD--------------------- 418
Query: 1562 XEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSIS 1383
S + R S E TG+G+ + A+
Sbjct: 419 --------SGATR-----SFEGTGLGLAISAR---------------------------- 437
Query: 1382 KCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L LMGG+++ S GS FT L + + G+ + TAF+G+ ++V
Sbjct: 438 --LLALMGGEVAVASKAGEGSIFTVQLPLPRAER--VGE-----IKVNTTAFQGLTGLIV 488
Query: 1202 DGRPVRSAVTRYHLKRLGI-LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP 1026
D + +V L+ G+ L+ + + A+ + + RE S+ F D+ P
Sbjct: 489 DDLELNRSVLTERLRAWGVDCLEAGSAIQALERI------SDLRREGRSVDFFILDYQMP 542
Query: 1025 ETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-VMCKPIRASTIASSIQ 849
ETD L + V+ V D+ ++ D + KP+R + + ++
Sbjct: 543 ETDGCELAQRIRAIPAYATSPIVVLSAVDHALDRSDPNALQDFEIAQKPLRVAQLKQVLR 602
Query: 848 QLLKVEIAERKDNQ-NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
+ L +E Q ++ ++ S LV +L+ +DN+ N V LK G +++ +G
Sbjct: 603 RALHLEKQPLSVPQSSQATYQTSNLV--KLLIAEDNRTNQLVVTRMLKDAGFDITIAANG 660
Query: 671 KDAISL---LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
+A+ +QP D MD+ MP MDG AT +IR++E A +
Sbjct: 661 VEAVERFKEVQP----DIILMDMMMPVMDGVAATVKIREIERAARSRGCH---------- 706
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV 333
++A+TA+ +++ +C+++GMD ++SKP +++ L + + V D+ V
Sbjct: 707 ------IIALTANAMESHRNKCMRAGMDDFLSKPINKKALIATIQKWVEVDEDAPV 756
>gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
ref|NP_838302.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
ref|NP_708580.1| sensor-regulator [Shigella flexneri 2a str. 301]
sp|P59342|BARA_SHIFL Sensor protein barA
Length = 918
Score = 198 bits (504), Expect = 1e-48
Identities = 178/647 (27%), Positives = 279/647 (43%), Gaps = 14/647 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 259 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLT 318
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+D+ T + L+ +INDVLD +K+EAGKL LE++PF LRS +D+VV+L
Sbjct: 319 LKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTL 378
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ S +K +EL + + +VP N++G+ ++
Sbjct: 379 LAHSSHDKGLELTLNIKSDVPD--------------NVIGDPLRL--------------- 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
Q++ N G ++ T NG + L A
Sbjct: 410 -----QQII---TNLVGNAIKFTENGNIDILVEKRALS---------------------- 439
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +V + + I DTG+GIP + Q R+F F QAD+S SR +GGTG+GL I++
Sbjct: 440 ---------NTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQ 490
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLTEALPTAFKGMKAILV 1203
L MGG ISF S P+ GSTF F L + I G S + L G + V
Sbjct: 491 KLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSIQCLA--------GKRLAYV 542
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + T L +++ V P + + +L I F P
Sbjct: 543 EPNSAAAQCT----------LDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPL 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSIQQ 846
T + H R K ++D + L ++ + +K + KP+ + + ++
Sbjct: 593 T----MQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPAL-- 646
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
E K N P S L ++ VDDN NL++ A L+ +V +SG
Sbjct: 647 ---TEFCHHKQNTLLPVTDESKL-AMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQ 702
Query: 665 AIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ Q P FD MD+QMP+MDG A I Q+ +
Sbjct: 703 AVERAKQMP--FDLILMDIQMPDMDGIRACELIHQL-------------------PHQRQ 741
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
PV+A+TA + E+ + +GM Y++KP +EE+L+ + R G+
Sbjct: 742 TPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGS 788
>ref|NP_743807.1| sensor histidine kinase/response regulator GacS [Pseudomonas putida
KT2440]
gb|AAN67271.1| sensor histidine kinase/response regulator GacS [Pseudomonas putida
KT2440]
Length = 917
Score = 198 bits (504), Expect = 1e-48
Identities = 188/658 (28%), Positives = 278/658 (42%), Gaps = 21/658 (3%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 252 DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 311
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+ +IN++LD +KIEAGKL L+++PF+LR L+ D +++
Sbjct: 312 QKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTI 371
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL + + P ++GDP R +QILTNLV NA+KFT G + VR L E+
Sbjct: 372 LAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAML-ED 430
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ + Q+ R+ G G D R +Q F
Sbjct: 431 EHEDCAQL----------RISVQDTGI-----GLSPQDVRTLFQAF-------------- 461
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ +LA TG+G L ISK
Sbjct: 462 -----SQADN---SLARQPGGTGLG------------------------------LVISK 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEAL-PTAFKGMKAILV 1203
L E MGG+I S P GS F S L ++ D EAL P G +A +V
Sbjct: 484 RLIEQMGGEIGVDSTPGEGSQFWISLNLPKAHDD---------AEALPPQPLLGRRAAIV 534
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
DG + + L+ G+ + + + + +++ + AG + ++L PE
Sbjct: 535 DGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQAAS-QAGLPFEFAVLGANLGNLSPE 593
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD------KDKYGSIFDIVMCKPIRASTIA 861
L H +Q + VVL T+E + +G + C +
Sbjct: 594 Q----LGHYHQQL--ERYHCQCVVLCPTTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLL 647
Query: 860 SSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCV 681
+Q + + Q RP IL VDDN NL + L+ GA V V
Sbjct: 648 ELVQPRRPLAEGSNPNGQRRP----------KILCVDDNAANLLLVKTLLEDLGAEVLAV 697
Query: 680 ESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
+G A+ +Q FD MDVQMP MDG T QIR E +T
Sbjct: 698 NNGYAAVQAVQ-EELFDLVLMDVQMPGMDGRACTEQIRLWE----------------NTQ 740
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR---LVVGTTDSA 336
+ LP++A+TA + + SGMD Y++KP E QL Q V + L +GT A
Sbjct: 741 SGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKWTGLSLGTPQQA 798
>gb|EAN26968.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Magnetococcus sp. MC-1]
ref|ZP_00608609.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Magnetococcus sp. MC-1]
Length = 1166
Score = 198 bits (504), Expect = 1e-48
Identities = 172/621 (27%), Positives = 272/621 (43%), Gaps = 11/621 (1%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
AE A++AKS FLA SHEIRTP+N + Q +Y + + GR L+ +I
Sbjct: 429 AEQANLAKSDFLANMSHEIRTPLNAIINLSYLILQTPLTSKQSNYLEKIESAGRTLLGVI 488
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAG L L+ V F L ++ +V ++ ++ +K ++L V + P ++GD
Sbjct: 489 NDILDYSKIEAGHLVLDHVAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQMMGD 548
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGA 1659
P R +L NL NA+KFTE G V +RV E + +LH ++ G
Sbjct: 549 PMRLGAVLINLTNNAIKFTEHGEVVIRV--DAKQQREQHYLLHFSVQDTG---------- 596
Query: 1658 FNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIP 1479
G A ++ +Q F +Q+DS +IS G G+
Sbjct: 597 ----IGISAEQQKRLFQSF-------------------SQADS-----SISRRYGGTGL- 627
Query: 1478 LQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSAT 1299
GL+ISK L ELMGG +S S G+TF F+
Sbjct: 628 ---------------------------GLAISKKLVELMGGTLSLQSVVGQGTTFEFTIP 660
Query: 1298 LKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMN 1119
L+ +I D S T+ G++ ++VD + L + + V +
Sbjct: 661 LQ--AVEIKPDEVPS-----ATSLNGVRVLVVDDNATAREILEEQLNAFHMEVCSVASGE 713
Query: 1118 AVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVT 939
A + E L + D + V+ + LR GQ++ +L+
Sbjct: 714 AALDVL--------HHEPRPELILLDDQMTGLSGVETVRRLR----GQINLARIPEVLML 761
Query: 938 SEADKDKYGSIFDIV-----MCKPIRASTIASSIQQLLKVEIAERKDNQNRPSF---LR- 786
S+ ++K + + MCKPI S + ++ + ++ E RK RP LR
Sbjct: 762 SDHGREKVRQEAEALGITHFMCKPISPSVLLETLLE-VRGECLPRKQRSRRPLIHPELRD 820
Query: 785 --SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 612
S + G +L+V+DN +N +A L G V+ SG+ A+ LL FD MD+
Sbjct: 821 GLSAIAGARVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDI 880
Query: 611 QMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECI 432
QM +MDG+ T Q+RQ + + K LPV+AMTA + + E+ +
Sbjct: 881 QMSDMDGYATTRQLRQ-------DPRFKT------------LPVVAMTAHAMVSDREKAL 921
Query: 431 KSGMDGYVSKPFDEEQLYQAV 369
+ GM ++ KP + EQL+ A+
Sbjct: 922 QLGMQDHIPKPIEPEQLFAAL 942
>ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
Length = 1059
Score = 198 bits (503), Expect = 1e-48
Identities = 175/626 (27%), Positives = 265/626 (42%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+K+T E+ K A A AKS FLA SHEIRTP+NGV TQ+D
Sbjct: 372 EKLTLAVEDAEKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILADTPLTPTQRD 431
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
Y T + + L++LIND+LD +KIE+G L ++S S+ RE +
Sbjct: 432 YVDTIETSSQLLLSLINDILDFSKIESGML---------------LISPHSASIRESIYD 476
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
+A V + I +V RV + ++ Q+L
Sbjct: 477 IASIVAPKAKEQKI----------------SVNVDISPDTPARVMIDDH---RLRQIL-- 515
Query: 1706 AMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSD 1527
MN V+ TA G TLS + QSD D
Sbjct: 516 -MNFMSNAVKFTAEGGV-TLSI-----------------------------KTLEQSD-D 543
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
VT+ ++ DTG+GI Q Q ++F PF Q D ST+R +GGTG+GL+IS L ELMGGQI
Sbjct: 544 NVTIRFAVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQ 603
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRY 1167
S GS F F L + + T G + IL + + Y
Sbjct: 604 LDSVKGEGSCFYFDLEL-----PVDMMLPKPSTATADIYVLGNENIL--STRIECDLNLY 656
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQ 987
LK + Q NN +A+ + Q + +++F E D + T L L +
Sbjct: 657 GLK----VTQRTNNTSAMTEQLATQK----HNKPITVVFAEDDAFLANTHADNLAKLHQ- 707
Query: 986 KNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQ 807
+G + L+ + ++ G + +P+ + +I+ +AE +
Sbjct: 708 ------NGITICLIRSFLSEPADLGDNVTAQVAQPLLGLRLIKAIELCDTQGLAELSEAS 761
Query: 806 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDA 627
+P ++ IL+V+DNK+N ++A + K G +G++A+ + +
Sbjct: 762 QQPREIQ-----HKILIVEDNKINQKIAGLHVGKSGFEFEFANNGQEAVDMFTANPHYAV 816
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
MD MP MDGFEAT IR++E + N R+ +P++A+TA VI
Sbjct: 817 ILMDCMMPVMDGFEATSNIRRVEKETNATRR---------------IPIIALTASVIDDD 861
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAV 369
++C GMD YV KPF E L + V
Sbjct: 862 IQKCFDVGMDDYVPKPFKFEMLKEKV 887
Score = 89.4 bits (220), Expect = 1e-15
Identities = 56/170 (32%), Positives = 84/170 (49%)
Frame = -2
Query: 878 RASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYG 699
+ +T+ + K + E + PS + IL+V+DN+VN +VA+ L K G
Sbjct: 907 KPATVTPILNAAAKQTLPEERVQNTVPS------KSERILLVEDNRVNQKVASVMLTKAG 960
Query: 698 ANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLAS 519
++G+ A+ + Q FD MD MP MDGF AT +IR E KN S
Sbjct: 961 YAFEIADNGQIAVDMYQNDSSFDIILMDCMMPVMDGFTATKEIR-------EHEKNLGLS 1013
Query: 518 IEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
P++A+TA VI ++C SGMDGYV+KP +E+L+ +
Sbjct: 1014 ---------KTPIIALTASVIDDDIQKCFDSGMDGYVAKPVRKEKLFHQI 1054
>dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
ref|NP_104816.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
Length = 786
Score = 197 bits (502), Expect = 2e-48
Identities = 177/639 (27%), Positives = 280/639 (43%), Gaps = 32/639 (5%)
Frame = -2
Query: 2201 QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITL 2022
+AEAAD AKS+FLA SHEIRTPMNGV QK + G AL+T+
Sbjct: 231 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTPRQKTFTDVIVKSGNALLTI 290
Query: 2021 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 1842
IND+LD +KI AG+L L+ PF L ++DV +L S++ EK +EL V V +P V+G
Sbjct: 291 INDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVG 350
Query: 1841 DPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANG 1662
D RFRQI+TNLVGNAVKFTE+GHV + V N V+ + RVE T
Sbjct: 351 DAGRFRQIVTNLVGNAVKFTEKGHVLIDV-----GGETVNDVVQLRL-----RVEDTG-- 398
Query: 1661 AFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGI 1482
G A +N ++ F +G ++ + E TG+G+
Sbjct: 399 -----IGIPAEKLQNVFEKF-----------AQVDGSSTRRH-----------EGTGLGL 431
Query: 1481 PLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSA 1302
+ A+ L +LM G+I S GS F F+
Sbjct: 432 AIAAR------------------------------LVDLMAGKIGVESEIGRGSVFWFAV 461
Query: 1301 TLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKR----------- 1155
L + + + +P G + +++D PV + L+
Sbjct: 462 PLPVHH-------AEAREAIVPVDVTGARVLVIDDNPVNREILLEQLRSWSFDCAAAESG 514
Query: 1154 ------LGILLQVVNNMNAVVKAF--PGQNG-------AAGSREKASILFI-----ESDF 1035
L Q+ +++ ++ + PG NG AA SR A + I + DF
Sbjct: 515 AVGLAFLDRACQLGASVDCIILDYQMPGMNGADVARAIAADSRLSAIPIVILTSVDQVDF 574
Query: 1034 WRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPI-RASTIAS 858
+ D + HL + + G + ++ + + K I + V KP+ +A+ A
Sbjct: 575 GKMIIDFGISAHLTKPARSAVLLGTVISVIQKARSQGGKAQFIREPVQPKPVPQAAPPAF 634
Query: 857 SIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVE 678
++ + V + ++ P+ +IL+ +DN+VN V L G +
Sbjct: 635 TVIRGPAVPVMAVPESTAMPN------GPIDILIAEDNEVNQLVFGQILNGLGLSYRIAG 688
Query: 677 SGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTA 498
+G+ A+ + + H MDV MPEM+G+EAT IR +E T++
Sbjct: 689 NGRTAVEMYRSLHP-KLILMDVSMPEMNGYEATRAIRAIE-----------------TSS 730
Query: 497 EYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
H+P++ +TA ++ ++CI++GMD Y+ KP ++L
Sbjct: 731 GGHIPIIGVTAHALKGDRDKCIEAGMDDYLPKPVSPDRL 769
>ref|ZP_00826632.1| COG0642: Signal transduction histidine kinase [Yersinia mollaretii
ATCC 43969]
Length = 924
Score = 197 bits (501), Expect = 2e-48
Identities = 178/653 (27%), Positives = 289/653 (44%), Gaps = 25/653 (3%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQ----------AEAADVAKSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q A+ A KS+FLA SHE+RTP+NGV
Sbjct: 258 DQATSDLRETLEQMEIQNVELGLANKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQT 317
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ DY QT Q L+ +INDVLD +K+EA KL LE +PF LR +D+VV L
Sbjct: 318 LKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVIL 377
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + EK +EL + + ++VP+ +VG+A
Sbjct: 378 LAHTAHEKGLELTLHINNDVPE--------------QVVGDA------------------ 405
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
M Q++ + G ++ T G + L +A
Sbjct: 406 --MRLQQIVTNLL---GNAIKFTEQGNIDILVAVQALT---------------------- 438
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ RVTL + I DTG+GI Q ++F F QAD+S SR +GGTG+GL I++
Sbjct: 439 ---------AQRVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTGLGLVITE 489
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP--TAFKGMKAIL 1206
L + MGG ISF S GSTF F TL D + SL+ P + +G
Sbjct: 490 RLVKEMGGDISFLSQVDRGSTFRFHLTL---------DLNESLSYRQPDMSYLEGKTLAY 540
Query: 1205 VDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP 1026
++ ++ R L L I ++ + + + P Q+ DF
Sbjct: 541 IER---NASAARAALDILSITPLLITH-SPTLALLPAQH---------------YDFLLV 581
Query: 1025 ETDVQLLNHL---REQKNGQLSDGHKVVLLVTSEADKD-----KYGSIFDIVMCKPIRAS 870
+ N++ +++ + +V+L + S++ + + G+ + KP+ ++
Sbjct: 582 GVPIPFRNNMAVHQDKLVAAMKISERVILALPSQSQVEAEQLKQLGA--KACLIKPLSSN 639
Query: 869 TIASSI--QQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGA 696
+ ++ ++ L V + E + + L + ++ VDDN NL++ L++ A
Sbjct: 640 RLIPTLLSEEPLGVSLVEEQAE-------KPLKLPFKVMAVDDNPANLKLIGTLLEEQVA 692
Query: 695 NVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASI 516
+SG AI+ + H D MD+QMPE+DG A+ I QM
Sbjct: 693 ETVLCDSGAKAIAYAR-EHTLDIILMDIQMPEIDGIRASEIIHQM--------------- 736
Query: 515 EGSTTAEYHL--PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+HL P++A+TA ++ E+ +K GM Y++KP DE +L QA+SR
Sbjct: 737 ------SHHLDTPIIAVTAHAVRGQQEQLLKLGMADYLAKPIDETRLIQALSR 783
>dbj|BAD37547.1| putative histidine kinase 1 [Oryza sativa (japonica cultivar-group)]
dbj|BAD37425.1| putative histidine kinase 1 [Oryza sativa (japonica cultivar-group)]
Length = 946
Score = 197 bits (500), Expect = 3e-48
Identities = 179/657 (27%), Positives = 295/657 (44%), Gaps = 29/657 (4%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
D+VT KM +++ + EA AK L+ + H + GV Q
Sbjct: 328 DQVTRR-EKMADIRVR-EAVQKAKETELSKSLH-----ITGVLSMAEILATTKLDKEQYQ 380
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
+ G ++ LIND+LD +K+E+G ++LEA F R ++ V+ ++ +++ I
Sbjct: 381 LLEVMLSSGDLVLQLINDILDLSKVESGAMKLEATTFRPREVVKHVLQTAAASLKKELI- 439
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
L + DNVP V GD R RQILTNL+ NAVKFT G V + + VL
Sbjct: 440 LEGCIGDNVPLEVTGDVLRIRQILTNLISNAVKFTHEGKVGINL-----------HVLDK 488
Query: 1706 AMNG---KGGRVESTANGA-FNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGEN--S 1545
+ G +GG++ S A+ A F A+ R+ +N
Sbjct: 489 QLPGCRIEGGQLHSKAHSAPAAAAEHFSASPRKCDNDTLGCSNHEDACQTGIPSNDNFGE 548
Query: 1544 NQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
+ + V L + DTG+GIP ++ +F +MQA +R YGGTG+GL+I K L EL
Sbjct: 549 HHEGDEVVWLRCDVYDTGIGIPEKSLPLLFKRYMQASDDHARKYGGTGLGLAICKQLVEL 608
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVR 1185
MGG ++ S + GSTF+F K K+ D + +P++ ++G +
Sbjct: 609 MGGTLTVVSKENEGSTFSFVLPCKIPVKEDHSDD----PDDMPSSGGDFTTSDIEGSFIF 664
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLL 1005
R +L G+ V+NN + G + +IL + +P ++ +L
Sbjct: 665 KPQARPYLLTSGV--SVMNNTKLI--------GGNQFYDPPNIL----EDRKPFSNGFVL 710
Query: 1004 NHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKV--- 834
+ S H+ S +K+++ + I + + +A ++SS V
Sbjct: 711 --AEDHSTNSASTAHQSNGPSVSRTNKEQHDNAMVIELNR--QAERVSSSRGDTTSVSGL 766
Query: 833 --------EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVE 678
+ E K + S K IL+V+DNKVN+ VA + L++ G + V
Sbjct: 767 IHDERGPCRVHEEKSLHKKSKCSPSSNKAK-ILLVEDNKVNIMVAKSMLEQLGHGIDIVN 825
Query: 677 SGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQME------LKANEERKNKLASI 516
+G +AI +Q ++D MDV MPEMDG +AT IR E E +A
Sbjct: 826 NGLEAIRAIQ-KRQYDIILMDVHMPEMDGLQATKFIRSFENTGCWDTSVKPEHDQIIAGS 884
Query: 515 EGSTTAEY------HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ + + +P++AMTA+ + EEC+ +GMD Y+SKP + + + + + +
Sbjct: 885 DNLSDCAHMKKQGKRVPIIAMTANSFSESAEECLAAGMDSYISKPVNFQNIKECLQQ 941
>emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
kinase / response regulator hybrid [Rhodopirellula
baltica SH 1]
ref|NP_869452.1| sensory transduction histidine kinase-putative sensory histidine
kinase / response regulator hybrid [Rhodopirellula
baltica SH 1]
Length = 871
Score = 196 bits (499), Expect = 4e-48
Identities = 122/304 (40%), Positives = 162/304 (53%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+ E A+AA+ +KS+FLA SHEIRTPMN + Q+DY Q Q
Sbjct: 288 LHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKLDPDQQDYVQIIQESS 347
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
L+ LIND+LD +KIEA +LELE+VPF L ++ + FS K+ EK +EL + +
Sbjct: 348 NGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISPEL 407
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
P +IGDP R RQ+LTNL+GNA+KFT+ G V VRV +VL R
Sbjct: 408 PDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRV-----------EVLR--------RE 448
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
E T SG E+ +R D V L +S+
Sbjct: 449 ERADRDLAATHSGRESPER------------------------------DDMVELRLSVC 478
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
D+G+GIP QD V PF QAD+ST+R +GGTG+GLSIS+ L ELMGG++ S VG+
Sbjct: 479 DSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMGGELHLQSEVGVGT 538
Query: 1319 TFTF 1308
TF+F
Sbjct: 539 TFSF 542
Score = 68.9 bits (167), Expect = 1e-09
Identities = 44/156 (28%), Positives = 72/156 (46%)
Frame = -2
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL 654
E+ + +++ P+ R L ++LV +D N V A L+ G S G++ ++
Sbjct: 556 EVDDEEEDLGGPA--RQRLAPLHVLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETLTK 613
Query: 653 LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLA 474
+ +D MD+ MP MDG EAT IRQ E E H P++A
Sbjct: 614 WRS-ESYDVVLMDMHMPVMDGLEATRAIRQEEWGT-----------------ERHTPIVA 655
Query: 473 MTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
+TA + C ++GMD Y++KP +L A++
Sbjct: 656 LTAAAMSEDAAACREAGMDSYLTKPIHSRKLRDALA 691
>ref|ZP_00901477.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Pseudomonas putida F1]
gb|EAP49394.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Pseudomonas putida F1]
Length = 917
Score = 195 bits (496), Expect = 9e-48
Identities = 187/658 (28%), Positives = 277/658 (42%), Gaps = 21/658 (3%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 252 DQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 311
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+ +IN++LD +KIEAGKL L+++PF+LR L+ D +++
Sbjct: 312 QKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTI 371
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL + + P ++GDP R +QILTNLV NA+KFT G + VR L E+
Sbjct: 372 LAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAML-ED 430
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ + Q+ R+ G G D R +Q F
Sbjct: 431 EHEDCAQL----------RISVQDTGI-----GLSPQDVRTLFQAF-------------- 461
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ +LA TG+G L ISK
Sbjct: 462 -----SQADN---SLARQPGGTGLG------------------------------LVISK 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEAL-PTAFKGMKAILV 1203
L E MG +I S P GS F S L ++ D EAL P G +A +V
Sbjct: 484 RLIEQMGDEIGVDSTPGEGSQFWISLNLPKAHDD---------AEALPPQPLLGRRAAIV 534
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
DG + + L+ G+ + + + + +++ + AG + ++L PE
Sbjct: 535 DGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQAAS-QAGLPFEFAVLGANLGNLSPE 593
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD------KDKYGSIFDIVMCKPIRASTIA 861
L H +Q + VVL T+E + +G + C +
Sbjct: 594 Q----LGHYHQQL--ERYHCQCVVLCPTTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLL 647
Query: 860 SSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCV 681
+Q + + Q RP IL VDDN NL + L+ GA V V
Sbjct: 648 ELVQPRRPLAEMSNANGQRRP----------KILCVDDNAANLLLVKTLLEDLGAEVLAV 697
Query: 680 ESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
+G A+ +Q FD MDVQMP MDG T QIR E +T
Sbjct: 698 NNGYAAVQAVQ-EELFDLVLMDVQMPGMDGRACTEQIRLWE----------------NTQ 740
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR---LVVGTTDSA 336
+ LP++A+TA + + SGMD Y++KP E QL Q V + L +GT A
Sbjct: 741 SGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKWTGLSLGTPQQA 798
>ref|ZP_00745934.1| COG0642: Signal transduction histidine kinase [Vibrio cholerae V52]
Length = 1113
Score = 195 bits (495), Expect = 1e-47
Identities = 190/694 (27%), Positives = 290/694 (41%), Gaps = 32/694 (4%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADV---AKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+TE +EL+ EAAD AK FLA SHEIRTPMN + TQ+
Sbjct: 365 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQR 424
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
Y + L+ +IND+LD +K+EAGKL +E + F+L ++D+V ++ S K++EK I
Sbjct: 425 KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGI 484
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQV-L 1713
E + + ++P +IGDP R Q++ NL GNAVKFT +G + V A S + QV L
Sbjct: 485 EFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEI---VLSARVSQLNEQQVTL 541
Query: 1712 HGAMNGKG-GRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQS 1536
A+ G G + + F+ F AD + QY
Sbjct: 542 RFAVKDTGIGIAQDKLDDLFD---AFSQADNSITRQY----------------------- 575
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
TG+G+ + Q L ELMGG
Sbjct: 576 -----------GGTGLGLSISKQ------------------------------LVELMGG 594
Query: 1355 QISFTSHPSVGSTFTFSATL---KHSYKDIS----------------GDSSRSLTEALPT 1233
QI+ S GSTF FS +DIS DS+R + ++L T
Sbjct: 595 QITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLT 654
Query: 1232 AFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASIL 1053
A + + +G + L + Q +M V PG NG
Sbjct: 655 AMRFNVVTVSNG-----------FEALSEIQQKPFDMLFVDWNMPGMNG----------- 692
Query: 1052 FIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD----KDKYGSIFDIVMCK 885
++LL ++ GH LVT+ + + + D ++ K
Sbjct: 693 ------------IELLTRVKTLG----LRGHMKSFLVTAYGREINLEGENSKLVDALIVK 736
Query: 884 PIRASTIASSIQQLLKVEIAERKDNQ----NRPSFLRSLLVGKNILVVDDNKVNLRVAAA 717
P+ S + +I +E K N+ +RP+F VG+++L+V+DN+VN VA
Sbjct: 737 PVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNF-----VGQSLLLVEDNEVNQEVALG 791
Query: 716 ALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER 537
L+ G NV G++A+ L+ FD MD+QMP MDG AT IR AN
Sbjct: 792 LLQDTGLNVVVANHGQEALERLEHAD-FDLVLMDMQMPVMDGITATEHIR-----ANPRW 845
Query: 536 KNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
++ LP++AMTA+ + E C+++GM+ ++SKP + ++ YQ + +
Sbjct: 846 QS--------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 891
Query: 356 VGTTDSAV*CSKYDGPDFSFINRSEASPSCLCPA 255
+ + SF + S PS PA
Sbjct: 892 QVSDEQ------------SFSSHSPNKPSASKPA 913
>ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
Length = 808
Score = 194 bits (494), Expect = 2e-47
Identities = 176/642 (27%), Positives = 291/642 (45%), Gaps = 5/642 (0%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+++ + +++E+ K AE A+ KS+FLA SHEIRTPMNG+ QK+
Sbjct: 220 ERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDMPKEQKE 279
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
Y L+ LIND+LD +KIEAG+LEL+ P + + DV S F K+ +K ++
Sbjct: 280 YVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAEQKGLK 339
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
+ + +P +VIGD + RQ+L NLVGNA+KFTE GHV + + L E E +
Sbjct: 340 FQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHGHVMLSLRLEEVIEPEQKLRVKF 399
Query: 1706 AMNGKG-GRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDS 1530
+ G G E F+ F+ AD + Y G D
Sbjct: 400 EVTDSGIGIAEDKQQSVFDK---FQQADGSTTRIY-------------GGTGLGLTICDK 443
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLS-ISKCLAE--LMG 1359
+ +E T V + T + AD S + + I + +S L + +
Sbjct: 444 IVTLMGSKLELTSV------VGKGSTFYFTADFDPSLDVDESNIDFNKVSVLLVDDSQLN 497
Query: 1358 GQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDG-RPVRS 1182
+I+ T S G T + + +S ++SL L K M +I DG + RS
Sbjct: 498 MRITSTQLQSFGVKSECCETATQALELVSESVAKSLPYDLVLIDKVMPSI--DGFQLARS 555
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+ R+ +++ + A P + A +++ + +I RP D QL
Sbjct: 556 LIERFDKACPKLVM---------ISADPRKQDEARAKQVGFVAYIA----RPYQDNQLKW 602
Query: 1001 HLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAE 822
L E L+ + + + + + KP S A++ + +I +
Sbjct: 603 TLSE----VLARSADTSIFTYPNRGEVAFKDNQPVPLTKP-SGSVEATTSASVRTTQIDK 657
Query: 821 RKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP 642
+ + P + + GK +LVV+D++VN +VA LKK G V ++G+ + Q
Sbjct: 658 QAPIKEEPKPVAAPFSGK-VLVVEDSRVNQQVAKMMLKKLGFEVDIADNGEIGVEKFQ-A 715
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
+ ++ FMD QMP +DGFEAT QIR +E EG++ H+P++A+TA+
Sbjct: 716 NEYEMIFMDCQMPVLDGFEATKQIRALE--------------EGTSK---HIPIVALTAN 758
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSA 336
V+Q C GMD ++ KP ++ +L + V+ + T+S+
Sbjct: 759 VVQRDKHLCFDVGMDEFLPKPVNQGKLREIVASFLSKGTESS 800
Score = 52.0 bits (123), Expect = 2e-04
Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
Frame = -2
Query: 767 NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR----FDACFMDVQMPE 600
++L+VDD+++N+R+ + L+ +G C E+ A+ L+ +D +D MP
Sbjct: 487 SVLLVDDSQLNMRITSTQLQSFGVKSECCETATQALELVSESVAKSLPYDLVLIDKVMPS 546
Query: 599 MDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM-TADVIQATYEECIKSG 423
+DGF+ + + KA P L M +AD + + G
Sbjct: 547 IDGFQLARSLIERFDKA--------------------CPKLVMISADPRKQDEARAKQVG 586
Query: 422 MDGYVSKPFDEEQLYQAVSRLVVGTTDSAV*CSKYDGPDFSFINRSEAS 276
Y+++P+ + QL +S ++ + D+++ F++ NR E +
Sbjct: 587 FVAYIARPYQDNQLKWTLSEVLARSADTSI---------FTYPNRGEVA 626
>pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae
Length = 929
Score = 194 bits (493), Expect = 2e-47
Identities = 179/639 (28%), Positives = 274/639 (42%), Gaps = 13/639 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 263 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 322
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+++IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 323 QKSELTPRQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 382
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P + GDP R RQILTNLV NA+KFT G + R L +
Sbjct: 383 LAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDE 442
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ A R+ G G + D R +Q F
Sbjct: 443 TEEHAQL-----------RISVQDTGI-----GLSSQDVRALFQAF-------------- 472
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 473 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 495
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
L E MGG+I S P GS F S L + +D E+L G++A +++
Sbjct: 496 -LIEQMGGEIGVDSTPGEGSEFWISLKLPKARED--------KEESLNIPLGGLRAAVLE 546
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPET 1020
+ + L+ G+ V NN+ ++ + + + A +L + + PE
Sbjct: 547 HHDLARQALEHQLEDCGLQTIVFNNLENLLNGVTAAHETPAAIDLA-VLGVTALEISPE- 604
Query: 1019 DVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG--SIFDIVMCKPIRASTIASSIQQ 846
+L H+ + +N + +VL T+E + ++ + KP +Q+
Sbjct: 605 --RLRQHIWDLEN---LNCKVMVLCPTTEHALFQLAVHDVYTQLQAKP----ACTRKLQK 655
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L IA R + L S +L VDDN NL + L+ GA V VE G
Sbjct: 656 ALSELIAPRAVRADIGPPLSSR--APRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYA 713
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ +Q FD MDVQMP MDG +AT IR E + N+ L
Sbjct: 714 AVNAVQ-QEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS----------------SL 756
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
P++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 757 PIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVV 795
>ref|ZP_00775436.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Pseudoalteromonas atlantica T6c]
gb|EAO67957.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Pseudoalteromonas atlantica T6c]
Length = 720
Score = 194 bits (493), Expect = 2e-47
Identities = 167/622 (26%), Positives = 268/622 (43%), Gaps = 7/622 (1%)
Frame = -2
Query: 2207 KTQAEAADV--AKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
K QAEA D AKS+FLA+ SHE+RTPMNG+ + Y + A+ GR
Sbjct: 220 KAQAEAIDASKAKSEFLASMSHELRTPMNGLFGMMELAIDNPHKSGE--YLKKAKNAGRQ 277
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L+ LINDVLD +KIEAGKL +E DL LMDDV S+ S+ R K + N+P
Sbjct: 278 LLVLINDVLDLSKIEAGKLRIERTSVDLLQLMDDVTSVQSANCRLKKLAFDYQKQTNLPA 337
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVES 1674
++GDP R Q+LH ++ ++
Sbjct: 338 YIVGDPTRIA----------------------------------QILHNLLSNA---IKF 360
Query: 1673 TANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDT 1494
T G G ++R+ W L I ++DT
Sbjct: 361 TQQGTVTLRIGVFVTEKRH-W-------------------------------LTIDVQDT 388
Query: 1493 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTF 1314
G+GIP + +F F QAD ST+R +GGTG+GLSI+K L +LMGG+++ S GS F
Sbjct: 389 GMGIPPEKTRTIFNKFEQADQSTTRIHGGTGLGLSIAKQLTDLMGGKLTVQSKVDKGSCF 448
Query: 1313 TFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV 1134
TFS ++ K + S+ + ++ +VD ++ + LG L
Sbjct: 449 TFSVPIEIDDKQVENIYSK----------QTLRCAIVDDLQTSREYIQHIVTSLGCLPNT 498
Query: 1133 VNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE-TDVQLLNHLREQKNGQLSDGHK 957
+N ++ A + +L + D PE T V ++ LR++ QLS
Sbjct: 499 FDN---------AEDFLASDISQFDVLLL--DLSMPEITGVDVVETLRDR---QLSKLPH 544
Query: 956 VVLLVTSEADKDKYGSIFDIVM---CKPIRASTIASSIQQLLKVEIAERKD-NQNRPSFL 789
++++ D S+ D++ KPI + S +++L + + +P
Sbjct: 545 IIIVSAVIEHLDCSTSVRDLIWRTHAKPIVRQELESDLKKLQNFYSRQHTSIEEEQPE-- 602
Query: 788 RSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQ 609
IL+V+DN++N V L+ G + G+ A+ ++D MD+
Sbjct: 603 ------HKILIVEDNEINAEVVKVMLEGAGYQIVIATDGEKALQAC-IFEQYDLILMDMH 655
Query: 608 MPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIK 429
MP MDG AT ++R+ + P++A++A+ E CI+
Sbjct: 656 MPVMDGITATQKLRR--------------------EMNFTNPIIALSANAFVEDREHCIE 695
Query: 428 SGMDGYVSKPFDEEQLYQAVSR 363
+GM+ ++SKP +++ L + R
Sbjct: 696 AGMNDFISKPVEKQALLATIKR 717
>sp|P48027|GACS_PSESY Sensor protein gacS
gb|AAA25877.1| regulatory protein
Length = 907
Score = 194 bits (493), Expect = 2e-47
Identities = 179/639 (28%), Positives = 274/639 (42%), Gaps = 13/639 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 241 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 300
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+++IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 301 QKSELTPRQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 360
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P + GDP R RQILTNLV NA+KFT G + R L +
Sbjct: 361 LAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDE 420
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ A R+ G G + D R +Q F
Sbjct: 421 TEEHAQL-----------RISVQDTGI-----GLSSQDVRALFQAF-------------- 450
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 451 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 473
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
L E MGG+I S P GS F S L + +D E+L G++A +++
Sbjct: 474 -LIEQMGGEIGVDSTPGEGSEFWISLKLPKARED--------KEESLNIPLGGLRAAVLE 524
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPET 1020
+ + L+ G+ V NN+ ++ + + + A +L + + PE
Sbjct: 525 HHDLARQALEHQLEDCGLQTIVFNNLENLLNGVTAAHETPAAIDLA-VLGVTALEISPE- 582
Query: 1019 DVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG--SIFDIVMCKPIRASTIASSIQQ 846
+L H+ + +N + +VL T+E + ++ + KP +Q+
Sbjct: 583 --RLRQHIWDLEN---LNCKVMVLCPTTEHALFQLAVHDVYTQLQAKP----ACTRKLQK 633
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L IA R + L S +L VDDN NL + L+ GA V VE G
Sbjct: 634 ALSELIAPRAVRADIGPPLSSR--APRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYA 691
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ +Q FD MDVQMP MDG +AT IR E + N+ L
Sbjct: 692 AVNAVQ-QEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS----------------SL 734
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
P++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 735 PIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVV 773
>ref|YP_236768.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Pseudomonas syringae pv. syringae B728a]
gb|AAY38730.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Pseudomonas syringae pv. syringae B728a]
Length = 917
Score = 194 bits (493), Expect = 2e-47
Identities = 179/639 (28%), Positives = 274/639 (42%), Gaps = 13/639 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+++IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 311 QKSELTPRQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 370
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P + GDP R RQILTNLV NA+KFT G + R L +
Sbjct: 371 LAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDE 430
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ A R+ G G + D R +Q F
Sbjct: 431 TEEHAQL-----------RISVQDTGI-----GLSSQDVRALFQAF-------------- 460
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 461 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
L E MGG+I S P GS F S L + +D E+L G++A +++
Sbjct: 484 -LIEQMGGEIGVDSTPGEGSEFWISLKLPKARED--------KEESLNIPLGGLRAAVLE 534
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPET 1020
+ + L+ G+ V NN+ ++ + + + A +L + + PE
Sbjct: 535 HHDLARQALEHQLEDCGLQTIVFNNLENLLNGVTAAHETPAAIDLA-VLGVTALEISPE- 592
Query: 1019 DVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG--SIFDIVMCKPIRASTIASSIQQ 846
+L H+ + +N + +VL T+E + ++ + KP +Q+
Sbjct: 593 --RLRQHIWDLEN---LNCKVMVLCPTTEHALFQLAVHDVYTQLQAKP----ACTRKLQK 643
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L IA R + L S +L VDDN NL + L+ GA V VE G
Sbjct: 644 ALSELIAPRAVRADIGPPLSSR--APRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYA 701
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ +Q FD MDVQMP MDG +AT IR E + N+ L
Sbjct: 702 AVNAVQ-QEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQS----------------SL 744
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
P++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 745 PIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVV 783
>ref|ZP_00750537.1| COG0642: Signal transduction histidine kinase [Vibrio cholerae V51]
Length = 1317
Score = 194 bits (492), Expect = 3e-47
Identities = 183/656 (27%), Positives = 278/656 (42%), Gaps = 32/656 (4%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADV---AKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+TE +EL+ EAAD AK FLA SHEIRTPMN + TQ+
Sbjct: 569 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQR 628
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
Y + L+ +IND+LD +K+EAGKL +E + F+L ++D+V ++ S K++EK I
Sbjct: 629 KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGI 688
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQV-L 1713
E + + ++P +IGDP R Q++ NL GNAVKFT +G + V A S + QV L
Sbjct: 689 EFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEI---VLSARVSQLNEQQVTL 745
Query: 1712 HGAMNGKG-GRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQS 1536
A+ G G + + F+ F AD + QY
Sbjct: 746 RFAVKDTGIGIAQDKLDDLFD---AFSQADNSITRQY----------------------- 779
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
TG+G+ + Q L ELMGG
Sbjct: 780 -----------GGTGLGLSISKQ------------------------------LVELMGG 798
Query: 1355 QISFTSHPSVGSTFTFSATL---KHSYKDIS----------------GDSSRSLTEALPT 1233
QI+ S GSTF FS +DIS DS+R + ++L T
Sbjct: 799 QITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLT 858
Query: 1232 AFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASIL 1053
A + + +G + L + Q +M V PG NG
Sbjct: 859 AMRFNVVTVSNG-----------FEALSEIQQKPFDMLFVDWNMPGMNG----------- 896
Query: 1052 FIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD----KDKYGSIFDIVMCK 885
++LL ++ GH LVT+ + + + D ++ K
Sbjct: 897 ------------IELLTRVKTLG----LRGHMKSFLVTAYGREINLEGENSKLVDALIVK 940
Query: 884 PIRASTIASSIQQLLKVEIAERKDNQ----NRPSFLRSLLVGKNILVVDDNKVNLRVAAA 717
P+ S + +I +E K N+ +RP+F VG+++L+V+DN+VN VA
Sbjct: 941 PVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNF-----VGQSLLLVEDNEVNQEVALG 995
Query: 716 ALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER 537
L+ G NV G++A+ L FD MD+QMP MDG AT IR AN
Sbjct: 996 LLQDTGLNVVVANHGQEALERLDHAD-FDLVLMDMQMPVMDGITATEHIR-----ANPRW 1049
Query: 536 KNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
++ LP++AMTA+ + E C+++GM+ ++SKP + ++ YQ +
Sbjct: 1050 QS--------------LPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVL 1091
>ref|ZP_00753663.1| COG0642: Signal transduction histidine kinase [Vibrio cholerae RC385]
Length = 1331
Score = 193 bits (491), Expect = 4e-47
Identities = 189/694 (27%), Positives = 289/694 (41%), Gaps = 32/694 (4%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADV---AKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+TE +EL+ EAAD AK FLA SHEIRTPMN + TQ+
Sbjct: 583 MTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQR 642
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
Y + L+ +IND+LD +K+EAGKL +E + F+L ++D+V ++ S K++EK I
Sbjct: 643 KYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGI 702
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQV-L 1713
E + + ++P +IGDP R Q++ NL GNAVKFT +G + V A S + QV L
Sbjct: 703 EFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEI---VLSARVSQLNEQQVTL 759
Query: 1712 HGAMNGKG-GRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQS 1536
A+ G G + + F+ F AD + QY
Sbjct: 760 RFAVKDTGIGIAQDKLDDLFD---AFSQADNSITRQY----------------------- 793
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
TG+G+ + Q L ELMGG
Sbjct: 794 -----------GGTGLGLSISKQ------------------------------LVELMGG 812
Query: 1355 QISFTSHPSVGSTFTFSATL---KHSYKDIS----------------GDSSRSLTEALPT 1233
QI+ S GSTF FS +DIS DS+R + ++L T
Sbjct: 813 QITVHSEEGKGSTFEFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLT 872
Query: 1232 AFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASIL 1053
A + + +G + L + Q +M V PG NG
Sbjct: 873 AMRFNVVTVSNG-----------FEALSEIQQKPFDMLFVDWNMPGMNG----------- 910
Query: 1052 FIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD----KDKYGSIFDIVMCK 885
++LL ++ GH LVT+ + + + D ++ K
Sbjct: 911 ------------IELLTRVKTLG----LRGHMKSFLVTAYGREINLEGENSKLVDALIVK 954
Query: 884 PIRASTIASSIQQLLKVEIAERKDNQ----NRPSFLRSLLVGKNILVVDDNKVNLRVAAA 717
P+ S + +I +E K N+ +RP+F G+++L+V+DN+VN VA
Sbjct: 955 PVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNF-----AGQSLLLVEDNEVNQEVALG 1009
Query: 716 ALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEER 537
L+ G NV G++A+ L+ FD MD+QMP MDG AT IR AN
Sbjct: 1010 LLQDTGLNVVVANHGQEALERLEHAD-FDLVLMDMQMPVMDGITATEHIR-----ANPRW 1063
Query: 536 KNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
++ LP++AMTA+ + E C+++GM+ ++SKP + ++ YQ + +
Sbjct: 1064 QS--------------LPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVDKFYQVLRHFL 1109
Query: 356 VGTTDSAV*CSKYDGPDFSFINRSEASPSCLCPA 255
+ + SF + S PS PA
Sbjct: 1110 QVSDEQ------------SFSSHSPNKPSASKPA 1131
>ref|ZP_00843997.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Rhodopseudomonas palustris
BisB18]
gb|EAP13692.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Rhodopseudomonas palustris
BisB18]
Length = 1022
Score = 193 bits (491), Expect = 4e-47
Identities = 178/686 (25%), Positives = 291/686 (42%), Gaps = 15/686 (2%)
Frame = -2
Query: 2369 EMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEA 2190
E+ + ++ P S I LG I+++ ++ ++R + R ++ +AEA
Sbjct: 244 ELEIEFAEQFPATRSLIIFALGLIGIFVI-SCTLFTMFARSARAQN--RILKHAVRRAEA 300
Query: 2189 ADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDV 2010
A+ AKS+FLA SHEIRTP+NGV Q++YAQ G L+T++NDV
Sbjct: 301 ANEAKSEFLANMSHEIRTPLNGVLGMADVLMRTDLTPVQRNYAQLIVTSGSLLMTILNDV 360
Query: 2009 LDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWR 1830
LD AK+++G+L ++ +L+ + + S + +++REK +EL + V +VP+ V DP R
Sbjct: 361 LDMAKLDSGQLAIKPCKVELQLQLKEAASFYFAQAREKDLELVLDVAPDVPRHVQLDPMR 420
Query: 1829 FRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNT 1650
RQIL GN + G ++ T+ G
Sbjct: 421 LRQIL----GNLI---------------------------------GNALKFTSKGGVAV 443
Query: 1649 LSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQA 1470
+ ++ D ++ L IS+ DTG+G+ +
Sbjct: 444 IVSYQHQDEKSG-------------------------------RLHISVVDTGIGLTEEQ 472
Query: 1469 QDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKH 1290
Q ++F F+QA+ R+ GTG+GL+I K L MGG+I TS VGSTF+F +
Sbjct: 473 QGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIGVTSEKGVGSTFSFWIPVIE 532
Query: 1289 SYKDISGDSSRSLTEALPTA----FKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNM 1122
D S D +R + T FK + L D H ++ + +
Sbjct: 533 ERAD-SEDDARGQCIGVVTGSEAQFKAIVHALSDAG--------VHCRKFEYGPDCLPRI 583
Query: 1121 NAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLV 942
A +KA P +A I + + R Q L Q G + L+
Sbjct: 584 LAAMKAAP---------MRALIFDEDRNIQRASDQWQAL---------QAEIGPGLPALI 625
Query: 941 TSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAE-----------RKDNQNRPS 795
E+ + F + KP A + ++ + A + P
Sbjct: 626 LGESQFSPHYEKFSGFLVKPFIAVDLIDELRSISAEAAAPPLPSGGVLRGASAEAMELPK 685
Query: 794 FLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMD 615
F G ++L+VDDN++NL + +K++G V G +I + + FD +D
Sbjct: 686 FS-----GSSVLLVDDNQINLIILEEIMKEFGFAVEATTEGASSIRMAEAGS-FDLMLID 739
Query: 614 VQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEEC 435
QMP M+GF TG++R EL A E K+ P++A+TA+ ++ E C
Sbjct: 740 CQMPVMNGFVVTGKMR--ELMAAGEIKS--------------CPIVAVTANALKGDREAC 783
Query: 434 IKSGMDGYVSKPFDEEQLYQAVSRLV 357
I++GMD V KP + A+ +LV
Sbjct: 784 IEAGMDDVVFKPISIRIIADALDQLV 809
>gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS
[Pseudomonas syringae pv. phaseolicola 1448A]
ref|YP_275861.1| response regulator, sensor histidine kinase component GacS
[Pseudomonas syringae pv. phaseolicola 1448A]
Length = 917
Score = 192 bits (489), Expect = 6e-47
Identities = 178/639 (27%), Positives = 274/639 (42%), Gaps = 13/639 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+++IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 311 QKSELTPRQFDYLGTIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 370
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P + GDP R RQILTNLV NA+KFT G + R L +
Sbjct: 371 LAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDE 430
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ A R+ G G + D R +Q F
Sbjct: 431 TEEHAQL-----------RISVQDTGI-----GLSSQDVRALFQAF-------------- 460
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 461 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
L E MGG+I S P GS F S L + +D E+L G++A +++
Sbjct: 484 -LIEQMGGEIGVDSTPGEGSEFWISLKLPKARED--------KEESLNIPLGGLRAAVLE 534
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPET 1020
+ + L+ G+ V NN+ ++ + + + A +L + + PE
Sbjct: 535 HHDLARQALEHQLEDCGLQTIVFNNLENLLNGVTAAHETPAAIDLA-VLGVTALEISPE- 592
Query: 1019 DVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG--SIFDIVMCKPIRASTIASSIQQ 846
+L H+ + +N + +VL T+E + ++ + KP +Q+
Sbjct: 593 --RLRQHIWDLEN---LNCKVMVLCPTTEHALFQLAVHDVYTQLQAKP----ACTRKLQK 643
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L IA R + L S +L VDDN NL + L+ GA V VE G
Sbjct: 644 ALSELIAPRAVRADIGPPLSS--HAPRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYA 701
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ +Q FD MD+QMP MDG +AT IR E + N+ L
Sbjct: 702 AVNAVQ-QEAFDLVLMDMQMPGMDGRQATEAIRTWEAERNQS----------------SL 744
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
P++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 745 PIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVV 783
>gb|EAN27174.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00608425.1| PAS [Magnetococcus sp. MC-1]
Length = 685
Score = 192 bits (488), Expect = 8e-47
Identities = 167/629 (26%), Positives = 276/629 (43%), Gaps = 8/629 (1%)
Frame = -2
Query: 2225 RKMEEL---KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQT 2055
++ EEL + +A+ A+ AKS+FLA SHEIRTPMN + Q+ Y Q
Sbjct: 148 QREEELTASRLKADQANQAKSEFLANMSHEIRTPMNAIIGMADLLLETELNKDQRRYVQI 207
Query: 2054 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF 1875
G +L+ LINDVLD +K+EA +LELE PFDL +L++ V +F+ +++EK ++L
Sbjct: 208 FARAGASLLELINDVLDLSKVEADRLELEHRPFDLWALVEGAVEIFTLRTQEKGVKLDFE 267
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNG 1695
+ P+ VI D R RQIL NL+
Sbjct: 268 LSARAPRYVISDQKRLRQILVNLL------------------------------------ 291
Query: 1694 KGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTL 1515
G V+ T +G + W YF
Sbjct: 292 -GNAVKFTQSGQIQLWVDVRDCEDAGGWLYFR---------------------------- 322
Query: 1514 AISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSH 1335
++D+G+G+ Q +F PF+QAD+S +R +GGTG+GL+I K L EL+ G I S
Sbjct: 323 ---VQDSGIGMSKAQQKSIFEPFVQADASVTRQHGGTGLGLAICKKLVELLSGDIWLESE 379
Query: 1334 PSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKR 1155
GS F F+A H+ + +S R+ T A G +L+ +P + L+R
Sbjct: 380 LGQGSRFHFTARFTHT--ALVAESERAFTSA---KLHGRHVLLLGSQPQNRVLLESVLRR 434
Query: 1154 LGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDV-QLLNHLREQKNG 978
G + V + + AG R ++L D + V Q + +R NG
Sbjct: 435 AGCQITTVTHQAQLAGHL--LEPPAGLRPFHAVLV---DCYNSMARVHQQIASVR--ANG 487
Query: 977 QLSDGHKVVLLVTSEADKDKY--GSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
+ +VLLV +D + +++ +P+ + ++ ++ A +
Sbjct: 488 SVM---PMVLLVGEARQEDIQIAADLGVLLLERPVSHGRLLEALGATMEQGEAALLSSSL 544
Query: 803 RPSFLRSLL--VGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFD 630
P+ +L V IL+ +D+ N + A LK+Y ++ +G +A++L + H +D
Sbjct: 545 SPTAAIEMLKQVPLKILLTEDSVDNAVLFKAYLKQYPLEITHAANGAEALTLFE-QHHYD 603
Query: 629 ACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQA 450
FMD+QMP MDG+ AT R M ++R+ P+LA+TA +
Sbjct: 604 LVFMDLQMPVMDGYSAT---RAMRFFEKQQRRPP-------------TPILALTAYALSG 647
Query: 449 TYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++ G D ++ KP + +L ++++
Sbjct: 648 DADKSRDVGCDAHLVKPIKKLELLSSIAQ 676
>gb|EAN27618.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Magnetococcus sp. MC-1]
ref|ZP_00607967.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Magnetococcus sp. MC-1]
Length = 948
Score = 192 bits (487), Expect = 1e-46
Identities = 161/620 (25%), Positives = 267/620 (43%), Gaps = 7/620 (1%)
Frame = -2
Query: 2201 QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITL 2022
+A A+ AKS FLA SHEIRTPMN + Q++Y + G+ L+ L
Sbjct: 427 EALKANRAKSDFLAVMSHEIRTPMNAIMGMTELLEETELTTIQRNYLSICRSSGQNLLQL 486
Query: 2021 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 1842
IND+LD +K+EAG++E+ PF L ++ D + +++EK + V++ VP +++G
Sbjct: 487 INDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEKGLNQIVYIDPAVPTILLG 546
Query: 1841 DPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANG 1662
D R RQIL N + G V+ T +G
Sbjct: 547 DQARIRQILINFL-------------------------------------GNSVKFTQSG 569
Query: 1661 AFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGI 1482
TL A ++N+ D L I + DTG+GI
Sbjct: 570 TIATLVTTRA---------------------------HANKEDQ----LVIHVVDTGIGI 598
Query: 1481 PLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSA 1302
Q+ +F F Q DSS R GGTG+GL+I L LM G +S +S GSTFT +
Sbjct: 599 EQSEQEAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRAGKGSTFTLTL 658
Query: 1301 TLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNM 1122
L + + +SL + G ++ P+ + K G ++ N
Sbjct: 659 PLTVA----PAEQIQSL--KVERGLTGYHMVIWHTHPISTLYIEEMFKERGAKVRSCNQS 712
Query: 1121 NAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLV 942
+ + + + I + E D P ++L+N +R +++ H++ +LV
Sbjct: 713 MTLANCAIQGDAVLATTDMMIIHYHEEDKTNP---LELINTIRSEQS-----LHEIPVLV 764
Query: 941 TSEADKDKYGSIFDIVMCKPIRASTI----ASSIQQLLKVEIAERKDNQNRPSFL--RSL 780
YG +D + K + + S +Q +L +I + R + +
Sbjct: 765 --------YGRCYDPALLKQLNQLGVRFLPESLMQDVLCEQIVTELSKRPRSAVTSGQGG 816
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS-LLQPPHRFDACFMDVQMP 603
+ +IL+VDD+ N+ + A LKK +S V +GK+A+ ++Q D MD+QMP
Sbjct: 817 TLPMHILLVDDSPDNIFLIQAFLKKTSYQISTVYNGKEAVEYVMQADTPPDLILMDIQMP 876
Query: 602 EMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSG 423
MDG+ AT QIR +E + + R +P++A+TA + E+ +G
Sbjct: 877 IMDGYAATRQIRLLEQQQGQSR----------------IPIIALTAHAMAEEAEKLKAAG 920
Query: 422 MDGYVSKPFDEEQLYQAVSR 363
D +++KP + L + + R
Sbjct: 921 CDLHMAKPVSKRILLEVLGR 940
>ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae
pv. tomato str. DC3000]
gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 917
Score = 192 bits (487), Expect = 1e-46
Identities = 177/639 (27%), Positives = 273/639 (42%), Gaps = 13/639 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+++IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 311 QKSELTPRQFDYLATIEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 370
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P + GDP R RQILTNLV NA+KFT G + R L +
Sbjct: 371 LAPAAHAKHLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDE 430
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ A R+ G G + D R +Q F
Sbjct: 431 TEEHAQL-----------RISVQDTGI-----GLSSQDVRALFQAF-------------- 460
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 461 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
L E MGG+I S P GS F S L + +D E+L +G++A +++
Sbjct: 484 -LIEQMGGEIGVDSTPGEGSEFWISLKLPKARED--------KEESLNLPLEGLRAAVLE 534
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPET 1020
+ + L+ G+ V N+ ++ + + + A +L + + PE
Sbjct: 535 HHDLARQALEHQLEDCGLHTVVFTNLENLLNGVTAAHETPAAIDLA-VLGVTTLEISPE- 592
Query: 1019 DVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG--SIFDIVMCKPIRASTIASSIQQ 846
+L H+ + +N + +VL T+E + ++ + KP +Q+
Sbjct: 593 --RLRQHIWDLEN---LNCKVMVLCPTTEYALFQLAVHDVYTQLQAKP----ACTRKLQK 643
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L IA R + L S +L VDDN NL + L+ GA V VE G
Sbjct: 644 ALSELIAPRAIRADIAPPLSSR--APRVLCVDDNPANLLLVQTLLEDMGAEVMAVEGGYA 701
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ +Q FD MDVQMP MDG +AT IR E + + L
Sbjct: 702 AVNAVQ-QEAFDLVLMDVQMPGMDGRQATEAIRAWEAERGQS----------------SL 744
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
P++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 745 PIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVV 783
>ref|XP_478835.1| histidine kinase 1-like protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAC83066.1| histidine kinase 1-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 161
Score = 191 bits (485), Expect = 2e-46
Identities = 88/139 (63%), Positives = 111/139 (79%)
Frame = -2
Query: 3206 LAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAI 3027
+A WVL + A +HW RR ++ +AEE LV +CEERARMLQ+QF V+VNHVHA+AI
Sbjct: 7 VAVVAWVLASAALWAGLHWRFRRPALHKAEEALVCICEERARMLQDQFAVSVNHVHALAI 66
Query: 3026 LISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFHHEREMFESQQGWVMNT 2847
L+ TF+++K PPA+DQDTFA Y ARTSFERPLL+GVA+AQRV H +RE FE QQGW++ T
Sbjct: 67 LVVTFHYDKHPPALDQDTFAVYVARTSFERPLLSGVAYAQRVVHADRESFERQQGWIIKT 126
Query: 2846 MQREPAPPQVEYAPVIFSQ 2790
M+ EP+P Q EYAPVI+SQ
Sbjct: 127 MKHEPSPAQDEYAPVIYSQ 145
>ref|ZP_00586405.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Shewanella amazonensis SB2B]
gb|EAN39167.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Shewanella amazonensis SB2B]
Length = 941
Score = 190 bits (483), Expect = 3e-46
Identities = 185/664 (27%), Positives = 280/664 (42%), Gaps = 27/664 (4%)
Frame = -2
Query: 2273 SIAAAYSRY--------DKVTEDCRK-----------MEELKTQAEAADVAKSQFLATAS 2151
++AA+ S Y D+ T D R+ ++ K A+ A KS+FLA S
Sbjct: 261 AMAASLSEYHDEMQQNIDQATSDLRETLEQIEIQNIALDRAKKDAQEASRIKSEFLANMS 320
Query: 2150 HEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLEL 1971
HE+RTP+NGV +Q +Y +T + +L+ +IND+LD +K+EA K+ L
Sbjct: 321 HELRTPLNGVIGFARQLLKTPLHSSQMEYIKTIERSATSLLQIINDILDFSKLEANKMVL 380
Query: 1970 EAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAV 1791
E +PF LR+ ++D ++L + + K +E V V NVP+ + GD R Q++TNL+GNA+
Sbjct: 381 ETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANVPENLSGDVMRLGQVMTNLLGNAI 440
Query: 1790 KFTERGHVFVRVCLA--ENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRN 1617
KFTE G V +++ LA E++N+ R E T G G + +
Sbjct: 441 KFTEEGSVHLKISLASLEDNNLTL-------------RCEVTDTGI-----GIDPEQQEL 482
Query: 1616 SWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQA 1437
+Q F Q+DS +IS G G+ L R+ M
Sbjct: 483 LFQAF-------------------GQADS-----SISRRYGGTGLGLVITKRLVVQMM-- 516
Query: 1436 DSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSR 1257
GG+I F S GS+F F+ L+ S +
Sbjct: 517 -------------------------GGRIGFHSEVGKGSSFWFTVPLQLSPFPVH----- 546
Query: 1256 SLTEALP-TAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAA 1080
+ LP G +L + R + LK +++ + +N + + +
Sbjct: 547 ---DTLPLEKLIGHSVLLFEPRKLTRESIARKLKDWHMMVTLASNEDELERHL------- 596
Query: 1079 GSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGS--- 909
R +IL E+ L HL ++ D +LL+ D + Y
Sbjct: 597 DDRHYDAILLSGQSC---ESCEDLQRHL-----SRVKDHTGSLLLLNDCLDPEVYTQEME 648
Query: 908 -IFDIVMCKPIRASTIASS-IQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVN 735
D+V+ P+ +A + I +K A + +PS L N+L VDDN N
Sbjct: 649 PFVDLVLQLPVSELKLAQNLIFPPVKKNAAPKPALATKPSARHPL----NVLAVDDNLAN 704
Query: 734 LRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMEL 555
L++ LK+ ANV V SG A++L + FD FMD+QMP DG AT IRQ L
Sbjct: 705 LKLIDTLLKELVANVVAVSSGDQAVALAK-SRSFDLIFMDIQMPGTDGVTATRLIRQDSL 763
Query: 554 KANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ 375
N P++A+TA I E SGMDGY+ KP DE L
Sbjct: 764 NRN-------------------TPIIAVTAHAINEERERIQASGMDGYLPKPIDEAALKG 804
Query: 374 AVSR 363
+SR
Sbjct: 805 VISR 808
>gb|EAN28061.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Magnetococcus sp. MC-1]
ref|ZP_00607523.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Magnetococcus sp. MC-1]
Length = 899
Score = 190 bits (482), Expect = 4e-46
Identities = 173/631 (27%), Positives = 278/631 (44%), Gaps = 10/631 (1%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R++ K +AE A+ AKS+FLAT SHEIRTPMN + Q + T Q
Sbjct: 379 RQLALAKREAEEANAAKSRFLATMSHEIRTPMNAIVGMADLLKDTPLDREQARFVATFQR 438
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G L+ L+ND+LD +K+++G++ +E V D+R+L+DD+ ++ +K+R K ++L
Sbjct: 439 AGDQLMDLLNDILDLSKVQSGQIHIEVVETDIRTLLDDLSAMMVAKARVKQVDLLFNPHP 498
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
N+P V DP R RQ++ NL+GNA+KFT G V +R +S +V +G
Sbjct: 499 NLPARVGVDPLRLRQVMINLLGNAIKFTANGEVELRAYFTSSS-----EVPYGL------ 547
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
GFE +D I
Sbjct: 548 --------------GFEISD------------------------------------TGIG 557
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
I++T L+A FT QAD S +R +GGTG+GL+IS+ L LMGG I S
Sbjct: 558 IDET----RLKAIFEAFT---QADLSVTRQFGGTGLGLTISRHLVALMGGDIQVESTIGQ 610
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAF-KGMKAILVDGRPVRSAVTRYHLKRLG 1149
GS F F + + S+ E P + GM P + V R+
Sbjct: 611 GSRFWFEIPIDEPVQ----RQPLSILEPRPVLYLNGMS-------PNHAEVLRH------ 653
Query: 1148 ILLQVVNNMNAVVKAFPGQNGAAGSR----EKASILFIESDFWRPETDVQLLNHLREQKN 981
Q++++ + + G G++ S++++ES P +LL LR Q
Sbjct: 654 ---QLLHHCEEI--RYSHGEGELGAQLMEAAPGSVVWLESGH-DPTGAFRLLESLRGQYG 707
Query: 980 GQLSDGHKVVLLVTSEADK--DKYGSIFDIVMCKPIRASTIASSIQQLL---KVEIAERK 816
+ G ++ +K ++ + + KP + + +L +V +A R
Sbjct: 708 KR---GFHWIVAGWESVEKCLEQANFLGSHYIQKPHSMGQVLQLLMDVLGMQRVVLAPRV 764
Query: 815 DNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR 636
D L IL+ +D+ N+ + LKK + V +G++A+ ++ H
Sbjct: 765 D--------MDLQTPITILLAEDSPDNVLLVERFLKKTAYRLDVVGNGREALESVK-KHH 815
Query: 635 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 456
+D MD+QMPEMDG AT +R E + R PVLA+TA
Sbjct: 816 YDLILMDIQMPEMDGLSATRTLRSWEREQGTPR----------------TPVLALTAHAF 859
Query: 455 QATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ E I++G DG+++KPF +++L + + R
Sbjct: 860 REDREASIEAGCDGHLTKPFKKDELLKTIQR 890
>gb|EAN29169.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00606400.1| PAS [Magnetococcus sp. MC-1]
Length = 1691
Score = 188 bits (478), Expect = 1e-45
Identities = 176/641 (27%), Positives = 282/641 (43%), Gaps = 14/641 (2%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+ +EE + AE+A AKS F+A SHEIRTPMN V +DY + +
Sbjct: 387 KSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALRGDLSPKVRDYLEKTKN 446
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
+L+ +IND+LD +K++ G+LEL+ V FDL L++ + LFS ++ + ++L VF+
Sbjct: 447 ASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAADHAVDL-VFLA- 504
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
P F Q+L G+A++ + +F+ L N+
Sbjct: 505 ---------PLNFNQVL---YGDAMRLEQ---IFIN--LIRNA----------------- 530
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
V+ T NG + E + RV L S
Sbjct: 531 -VKFTKNGFITVRAQPELLE-------------------------------GHRVRLTCS 558
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ D+G+GI + +F PF+QADSST+R +GGTG+GLSI K L LM G + S P
Sbjct: 559 VSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVWAESEPGK 618
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
GS F F + D+ + R+ LP G + ++VD P +R HL+ L
Sbjct: 619 GSQFHFEILV-----DLYAEDRRN-RSLLPDVLWGERVLVVDDNP----DSREHLQALLS 668
Query: 1145 LLQVVNNMNAVVKAFPGQNGAAGSREKAS---ILFIESDFWRPETD-VQLLNHLREQKNG 978
L +++ + A P Q A E+ ++ D+ P D V + +R
Sbjct: 669 AL----SLSPSLCATPAQARALLLSEQGGPQPFRYLLVDWGLPGKDGVVAVIEMRAMLKA 724
Query: 977 QLSDG-HKVVLLVTS----EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKD 813
+L +G H ++L+++ E + D + KPI + +++ + + KD
Sbjct: 725 ELPEGLHPRIILLSAFGQDEIKNQAERAGVDYCLDKPISRDRLVTALSGGWH-DQEQHKD 783
Query: 812 NQN-----RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
+ S + L+ G +L+V+DN +N +VAA L++ G V E+G+ A+ L
Sbjct: 784 RRKVQQLAAESEIGRLVGGAYLLLVEDNPINQQVAAELLERVGLVVDIAENGQQALDRL- 842
Query: 647 PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMT 468
+D MD+ MP MDG EA +IR E A LPVLA++
Sbjct: 843 ARFEYDLVLMDLHMPVMDGSEAMQRIRAQE-------------------AWRSLPVLALS 883
Query: 467 ADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTT 345
+ + G G++ KP E+LY A+ R + T
Sbjct: 884 TGTGEEEQLDLQDLGFQGFLHKPIRPERLYGALKRWITRPT 924
Score = 117 bits (293), Expect = 3e-24
Identities = 63/157 (40%), Positives = 92/157 (58%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R+ E K +AEA + AKS+FLA SHEIRTP+N + Q+ + ++
Sbjct: 1299 REAELRKDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSESALSSEQQRLMEISRN 1358
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G L+ L+N+ LD AKIEAGKL+LE FDL L++++ + + K + L +
Sbjct: 1359 AGELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKRVAAEHKGVRLESEMAL 1418
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
VP+ V+GDP R RQIL NL+ NA+KFT G V +++
Sbjct: 1419 EVPRFVMGDPDRLRQILVNLLSNAIKFTNSGTVSLQM 1455
Score = 77.4 bits (189), Expect = 4e-12
Identities = 37/82 (45%), Positives = 52/82 (63%)
Frame = -2
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ DTGVGI + +++F PF QAD+ST+R +GGTG+GL+I K L E MGG I S V
Sbjct: 1467 VSDTGVGIAAHSMEKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVESQVGV 1526
Query: 1325 GSTFTFSATLKHSYKDISGDSS 1260
GSTF+ + L + + S+
Sbjct: 1527 GSTFSVNLPLPRAESSMDEPSA 1548
Score = 68.6 bits (166), Expect = 2e-09
Identities = 42/135 (31%), Positives = 73/135 (54%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
IL VDD + N ++ A L K G ++ E G A+ + H +D MD+ MP +DG+
Sbjct: 1563 ILAVDDAEDNRKLVQAFLAKSGHHLDLCEDGAQALDRFKREH-YDLVLMDLLMPVLDGYG 1621
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
AT +IRQ E +++++L + P++A+TA ++ ++ + G D Y++
Sbjct: 1622 ATRKIRQWE-----QQQHRLPT-----------PIIALTALSVRRDLDKALACGCDFYLT 1665
Query: 404 KPFDEEQLYQAVSRL 360
KPF + QL A+ R+
Sbjct: 1666 KPFRKHQLLDAIYRI 1680
Score = 50.4 bits (119), Expect = 5e-04
Identities = 45/199 (22%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Frame = -2
Query: 917 YGSIFDIVMCKPIRASTIASSIQQLLKVEIAER-------KDNQNR-PSFLRSLL-VGKN 765
+G + D+V+ + A + Q ++ ++ ++ KDN++ + + S+L V +N
Sbjct: 70 HGEVVDLVLQHNLPAIVLTGDKQVEMRTQLFKKGVLDYFVKDNRSVIDAVIHSVLRVARN 129
Query: 764 ----ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEM 597
++VVDD++ V L++YG V + G +A +LLQ D D +MP +
Sbjct: 130 RHLTMMVVDDSRSARAVLGQFLQRYGFQVRLAQDGAEAWALLQET-PVDLVVTDYEMPNL 188
Query: 596 DGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMD 417
+G T ++R + ++++ + S+ + L V + IK+G +
Sbjct: 189 NGVALTAKLR------SRYSRDEMGIMGLSSAGQSELAV-------------DFIKAGAN 229
Query: 416 GYVSKPFDEEQLYQAVSRL 360
Y++KP++ E+L V ++
Sbjct: 230 DYINKPYEPEELISRVYQM 248
Score = 44.3 bits (103), Expect = 0.035
Identities = 35/130 (26%), Positives = 56/130 (43%)
Frame = -2
Query: 776 VGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEM 597
V + IL+VDD N+ V L+ Y + SG +A+ L Q D +D+ MPEM
Sbjct: 1156 VKERILIVDDQPDNVDVLKDILEDYERMAAL--SGPEALMLAQCDPAPDMVLLDIMMPEM 1213
Query: 596 DGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMD 417
+G+E +++ ME A +PV+ ++A E G
Sbjct: 1214 NGYEVCRRLKAME-------------------ATQEIPVIFVSAKKEVVDEAEGFLIGGV 1254
Query: 416 GYVSKPFDEE 387
Y++KP+ E
Sbjct: 1255 DYITKPYHGE 1264
>gb|ABA03387.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
Nb-255]
ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
Nb-255]
Length = 754
Score = 188 bits (478), Expect = 1e-45
Identities = 166/645 (25%), Positives = 277/645 (42%), Gaps = 19/645 (2%)
Frame = -2
Query: 2237 TEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQ 2058
T+ R + E + +A A AKS+FLA SHE RTP+NG+ Q Y +
Sbjct: 215 TDSERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMSGLLLETLLTPEQTTYVK 274
Query: 2057 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAV 1878
+ G AL++LI D+LD ++IEAGK+ELE PF L L++D+ L + +++ + +E+A
Sbjct: 275 AVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQARQLEIAS 334
Query: 1877 FVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMN 1698
+V + +P ++G+A + QVL +N
Sbjct: 335 YVDETLP--------------AEVIGDAARL--------------------RQVL---LN 357
Query: 1697 GKGGRVESTANG--AFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDR 1524
G ++ T++G A + G D R
Sbjct: 358 LAGNAIKFTSSGGVALIVVPGIRPGDIR-------------------------------- 385
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
+ DTG+GI AQ R+F F QAD R+YGG+G+GLSIS + + MGG+I+
Sbjct: 386 ----FMVRDTGIGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITL 441
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S P GSTF L +D + + R L G +LV + + +++
Sbjct: 442 QSKPDSGSTFEVLVPLPA--QDRAPERKRFTAPDLT----GQPVMLVAPQAIETSLLARR 495
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
L+R G + +++ P E+A W + +
Sbjct: 496 LERWGAEICTASDLTVARALLP---------ERA---------WHAVVVDHAMGGGAIWR 537
Query: 983 NGQLSDGH--KVVLLVTSEADKDKY---GSIFDIVMCKPIRASTIASSIQ----QLLKVE 831
GQ + H + +++VT D + F + KP+R ++IA+ + +
Sbjct: 538 FGQAARQHTERRIIMVTPSTRHDLQVAGAAAFTGYLVKPLRTASIAARLSAPADDPTSLR 597
Query: 830 IAERKDNQNRPSFLRSLLVGK----NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
A + + RP R+ +IL+ +DN++N + + L + G V+ +G++A
Sbjct: 598 TAGGQPDCGRPETSRTPASTSGPSLSILIAEDNEINALLTRSLLTRLGHAVTVATNGEEA 657
Query: 662 I----SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE 495
+ + L +D MDVQMP +DG EAT +IR+ E + R
Sbjct: 658 LKSWDAALAAGAPYDLVLMDVQMPHLDGIEATRKIRERESVRSGRRTT------------ 705
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 360
+LA+TA+ + C ++GMDG++ KP D E+L A++ L
Sbjct: 706 ----ILALTANALIDDRHACFEAGMDGFLVKPLDRERLADALAGL 746
>dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas
fluorescens]
Length = 917
Score = 184 bits (468), Expect = 2e-44
Identities = 177/641 (27%), Positives = 280/641 (43%), Gaps = 15/641 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+ +IN++LD +KIEAGKL L++VPF+LR L+ D +++
Sbjct: 311 QKSEMSPRQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTI 370
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P ++GDP R +QILTNLV NA+KFT G + R + E+
Sbjct: 371 LAPAAHAKQLELVSLVYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVAR-AMIED 429
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
++ Q+ R+ G G D R +Q F
Sbjct: 430 EQEDSVQL----------RISVQDTGI-----GLSNQDVRALFQAF-------------- 460
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 461 -----SQADN-----SLSRQPVGTGLGLVISKR--------------------------- 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA-FKGMKAILV 1203
L E MGG+I S P GS F S L + D+ E LP A G + ++
Sbjct: 484 -LIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDV---------EDLPAAPLLGRRVAVL 533
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + ++ L+ G+ + N++ + + + + A +L + ++ PE
Sbjct: 534 ENHELARQALQHQLEDCGLEVTPFNSLENLTNGITSAHQTEQAIDLA-VLGVTANDIPPE 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKP---IRASTIASSI 852
+L HL + ++ G KV++L + +F+ + P ++A +
Sbjct: 593 ---RLNQHLWDLEH----LGCKVLVLCPTTEQ-----MLFNQSVPNPNSQLQAKPACTRQ 640
Query: 851 QQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
+ ++ + +++ P S + +L VDDN NL + L+ GA V VESG
Sbjct: 641 LRRALADLISPRPSRSEPGEPLSSRAPR-VLCVDDNPANLLLVQTLLEDMGAKVLAVESG 699
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
AI ++ FD MDVQMP MDG ++T IRQ E ER
Sbjct: 700 YAAIDAVK-QETFDLVLMDVQMPGMDGRQSTEAIRQWE----SERHGT------------ 742
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
LPV+A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 743 PLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVV 783
>gb|AAT41590.1| GacS [Pseudomonas fluorescens]
Length = 917
Score = 183 bits (465), Expect = 4e-44
Identities = 178/644 (27%), Positives = 276/644 (42%), Gaps = 18/644 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + +L+ +IN++LD +KIEAGKL L+ +PF+LR L+ D +++
Sbjct: 311 QKSELTPRQLDYLGTIEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTI 370
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P ++GDP R +QILTNLV NA+KFT G + R L E+
Sbjct: 371 LAPAAHAKQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAML-ED 429
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
+ ++ Q+ R+ G G D R +Q F
Sbjct: 430 EHEDSVQL----------RISIQDTGI-----GLSNQDVRALFQAF-------------- 460
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R+
Sbjct: 461 -----SQADN-----SLSRQPGGTGLGLVISKRL-------------------------- 484
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP-TAFKGMKAILV 1203
E MGG+I S P GS F S L + D E LP G + ++
Sbjct: 485 --VEQMGGEIGVDSTPGEGSEFWISLRLPKTRDD---------AEDLPGPPLLGRRVAVL 533
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + ++ L+ G+ + N + ++ + + + A +L I S+ PE
Sbjct: 534 ENHELARQALQHQLEDCGLQVTPFNTLESLTNGITVAHQTDQAIDLA-VLGITSNDMPPE 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI---FDIVMCKPIRASTIASSI 852
+L H+ + ++ G KV++L + + S+ + KP + S+
Sbjct: 593 ---RLNQHIWDLEH----LGCKVLVLCPTTEQTLYHLSVPNPHSQLQAKPACTRKLRRSL 645
Query: 851 QQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
L V + + P R+ +L VDDN NL + L+ GA V VESG
Sbjct: 646 SDL--VNPRPTRSEPHEPVASRA----PKVLCVDDNPANLLLVQTLLEDMGAKVLAVESG 699
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
A+ +Q FD MDVQMP MDG + T IRQ E +E
Sbjct: 700 YAAVKAVQ-KETFDLVLMDVQMPGMDGRQNTEAIRQWE-------------------SER 739
Query: 491 H---LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
H LP++A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 740 HCTPLPIVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVV 783
>gb|AAM18622.1| GacS-like sensor kinase protein [Acinetobacter baumannii]
Length = 935
Score = 183 bits (465), Expect = 4e-44
Identities = 168/629 (26%), Positives = 276/629 (43%), Gaps = 12/629 (1%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD-YAQTAQMCGR 2037
+ + QA +++ AKS FLA SHE+RTP+N + +++ Y QT +
Sbjct: 278 QARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIRKSSA 337
Query: 2036 ALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVP 1857
L+ LINDVLD +KI+AGKLELE PFDL + DV+ + S + +K I +A + DN+P
Sbjct: 338 HLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIP 397
Query: 1856 KVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVE 1677
+ VIGD RF+QILTNL+ NA+KFT G + VRV + + + +LH ++ G
Sbjct: 398 QQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQC--LLHFSVQDSG---- 451
Query: 1676 STANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIED 1497
G DR+ ++ F +Q D+ +++ +
Sbjct: 452 ----------IGLSGTDRKKLFESF-------------------SQGDA-----SVTRQF 477
Query: 1496 TGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSH-----P 1332
G G+ GL+ISK L LM GQI F +
Sbjct: 478 GGTGL----------------------------GLAISKQLVHLMHGQIGFEDNQERAPT 509
Query: 1331 SVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRL 1152
GSTF F+A + D + F+ ++ + P ++V RY+L+
Sbjct: 510 EKGSTFWFTA-------QFAVDEEHEIEH---PHFEHLQVVSYLAHPATASVLRYYLEN- 558
Query: 1151 GILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQL 972
QV + + + ++ ++ S +T+ LL +R + G L
Sbjct: 559 ---YQVPHIETQSILDLFSRLKHLDQKDNTWLIVDHSG----DTEA-LLKEIRSRYQGNL 610
Query: 971 S-DGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPS 795
+ G+++ L ++ +P+ S + QLL + ++ Q+
Sbjct: 611 AVYGYQMTL----------EPNMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNG 660
Query: 794 FLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP-----HRFD 630
G +IL VDD+ NL V A L + + SG++A++++Q FD
Sbjct: 661 ------QGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERIDQKLKPFD 714
Query: 629 ACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQA 450
FMD+QMP M G + T IR S+E + E LP++A+TA +
Sbjct: 715 LVFMDIQMPVMSGIDTTRAIR---------------SLESTLDGEMQLPIIALTAHALAD 759
Query: 449 TYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++ +K GM+ YV+KP EQ+ Q +++
Sbjct: 760 EKQKLLKVGMNDYVTKPIQMEQIIQILTQ 788
>emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1]
Length = 932
Score = 183 bits (464), Expect = 5e-44
Identities = 169/630 (26%), Positives = 282/630 (44%), Gaps = 13/630 (2%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXT-QKDYAQTAQMCGR 2037
+ + QA +A+ AKS FLA SHE+RTP+N + Q+ Y QT +
Sbjct: 276 QARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQNLSNEQRLYMQTIRKSSA 335
Query: 2036 ALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVP 1857
L+ LINDVLD +KI+AGKLELE F+L + DV+ + S + +K I++A + DN+P
Sbjct: 336 HLLALINDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYGDNIP 395
Query: 1856 KVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVE 1677
++VIGD R +QILTNL+ NA+KFT G + VRV + E+ +++ +LH ++ G
Sbjct: 396 EIVIGDALRVKQILTNLISNAIKFTPDGEIIVRVRM-EHDDID-QCLLHFSVQDSG---- 449
Query: 1676 STANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIED 1497
G DR+ ++ F +Q D+ +++ +
Sbjct: 450 ----------IGLSGTDRKKLFESF-------------------SQGDA-----SVTRQF 475
Query: 1496 TGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSH-----P 1332
G G+ GL+ISK L +LM G I F +
Sbjct: 476 GGTGL----------------------------GLAISKQLVQLMHGHIGFEDNQERAPT 507
Query: 1331 SVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRL 1152
GSTF F+A K I F ++ + P + + R++L+
Sbjct: 508 EKGSTFWFTAQFKTQEAHIIDHPE----------FPQLQVVSYLAHPATANILRHYLENY 557
Query: 1151 GILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQL 972
+ + ++++ F N + S+E ++ S +T+ LL +R++ G L
Sbjct: 558 EV---QHTEITSILELFSRLNHLS-SKENTWLIVDHSG----DTEA-LLKEIRQRYTGNL 608
Query: 971 S-DGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVE-IAERKDNQNRP 798
+ G+++ L ++ + +P+ S++ QLL + I E+ Q
Sbjct: 609 AVYGYQMAL----------EPNMLNEYRARPLYQPLSRSALIQLLSNQPIFEQPPEQFNG 658
Query: 797 SFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL-----QPPHRF 633
G ++L VDD+ NL V A L + S SG++A++++ Q F
Sbjct: 659 R-------GLHVLAVDDHLPNLIVLEALLSELNVTTSKALSGQEALNIIEQRIEQNEKPF 711
Query: 632 DACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQ 453
D FMD+QMP M G + T IR S+E + + LP++A+TA +
Sbjct: 712 DVVFMDIQMPVMSGIDTTRAIR---------------SLESTLDTQMRLPIIALTAHALA 756
Query: 452 ATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++ +K GMD YV+KP EQ+ +++
Sbjct: 757 DEKQKLLKVGMDDYVTKPIQMEQIIHILNQ 786
>ref|XP_645937.1| histidine kinase [Dictyostelium discoideum]
gb|EAL71952.1| histidine kinase [Dictyostelium discoideum]
Length = 1699
Score = 182 bits (462), Expect = 8e-44
Identities = 119/366 (32%), Positives = 186/366 (50%), Gaps = 8/366 (2%)
Frame = -2
Query: 2201 QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITL 2022
+AE + AK FL T SHE+RTP+NG+ TQ+D+ + L+ L
Sbjct: 664 RAEELNQAKINFLTTVSHEVRTPINGILASVEILDGSQLDVTQRDFLSCIKQSADYLLDL 723
Query: 2021 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 1842
I D+LD +KIEAGK EL+ V F+L +++++ +++ ++E+ IE+ F+ +VP ++IG
Sbjct: 724 ITDILDFSKIEAGKFELDRVEFNLITMLEESINIVYRTAQERGIEVLTFIDPDVPIILIG 783
Query: 1841 DPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE--NSNMEANQVLHGAMNGKGGRVESTA 1668
DP+R +Q + N + NA+KFT +G V V+V + + N+N N + N +
Sbjct: 784 DPYRVKQCVLNFLSNAIKFTHKGQVMVKVSIVDQINNNNNNNNNNNNNNNNNNNNNNNNN 843
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
N N + GF + N+ N+ + L+ S+ED+GV
Sbjct: 844 NNNNNKIVGFSNNNNNNN------------------NNNNNGNNGILNFKLSFSVEDSGV 885
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GI + D +FTPF Q S R Y GTG+GLSISK L LMGG+I S VGS F+F
Sbjct: 886 GIKEEVLDCLFTPFHQLGGS-PRKYLGTGLGLSISKKLTTLMGGEIGVKSVYGVGSAFSF 944
Query: 1307 SATLKH------SYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
++ L S + + S +L PT K I D +++ + LK + I
Sbjct: 945 TSILSTTSTTPISLQSLGSSLSIALNNLSPTIPKISGFIYDDNIHTSNSLFNF-LKLMNI 1003
Query: 1145 LLQVVN 1128
L+++N
Sbjct: 1004 NLKIIN 1009
Score = 73.2 bits (178), Expect = 7e-11
Identities = 42/124 (33%), Positives = 66/124 (53%)
Frame = -2
Query: 770 KNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDG 591
+N L+VDD ++N +V A L++ +VS E+G +A+ + FD FMD QMP +DG
Sbjct: 1574 RNALIVDDTELNRKVLAQLLRRMDWSVSFAENGIEALKEITSERCFDIIFMDCQMPILDG 1633
Query: 590 FEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGY 411
FE T +R EL+ N + N ++A++AD + + C GM+GY
Sbjct: 1634 FETTKLLRLRELENNWKPLN----------------IVALSADSSSSFGQVCFDCGMNGY 1677
Query: 410 VSKP 399
+ KP
Sbjct: 1678 LGKP 1681
>gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii]
Length = 706
Score = 182 bits (462), Expect = 8e-44
Identities = 179/646 (27%), Positives = 281/646 (43%), Gaps = 20/646 (3%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 47 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 106
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
DY T + L+ +IN++LD +KIEAGKL L++VPF+LR L+ D +++
Sbjct: 107 QKSELSPRHVDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTI 166
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P V+GDP R +QILTNL+ NA+KFT G + R + E+
Sbjct: 167 LAPAAHAKQLELVSLVYRDTPLAVVGDPLRLKQILTNLISNAIKFTREGTIVAR-AMVED 225
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
++ Q+ R+ G G D R +Q F
Sbjct: 226 EEEDSVQL----------RISVQDTGI-----GLSNQDVRALFQAF-------------- 256
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 257 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 279
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA-FKGMKAILV 1203
L E MGG+I S P GS F S L + D+ + LP+A G + ++
Sbjct: 280 -LIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDV---------DDLPSAPLLGRRVAVL 329
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ V ++ L+ G+ + N + ++ + + + A +L + ++ PE
Sbjct: 330 ENHDVARQALQHQLEDCGLEVTPFNTLESLTNGITSTHQTEQAIDLA-VLGVTANDIPPE 388
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKP---IRAST----- 867
+L HL + ++ G KV++L + +F+ + P ++A T
Sbjct: 389 ---RLNQHLWDLEH----LGCKVLVLCPTTEQ-----MLFNQSVPNPNSQLQAKTPCTRK 436
Query: 866 IASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVS 687
+ ++ L+ +A+R P R+ +L VDDN NL + L+ GA V
Sbjct: 437 LRRALADLISPPVAQR---TREPLSSRA----PRVLCVDDNPANLLLVQTLLEDMGAKVL 489
Query: 686 CVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
VESG AI ++ FD MDVQMP MD ++T IRQ E ER
Sbjct: 490 AVESGYAAIDAVK-QETFDLVLMDVQMPGMDRRQSTEAIRQWE----SERHGT------- 537
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
LPV+A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 538 -----PLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVV 578
>dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii]
Length = 917
Score = 182 bits (461), Expect = 1e-43
Identities = 173/641 (26%), Positives = 273/641 (42%), Gaps = 15/641 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-----------MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ ++ + +A A KS+FLA SHEIRTP+NG+
Sbjct: 251 DQATEDVRQNLETIEIQNIELDLTRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLL 310
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q DY T + L+ +IN++LD +KIEAGKL L++VPF+LR L+ D +++
Sbjct: 311 QKSELSPRQLDYLGTIEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTI 370
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + K +EL V + P ++GDP R +QILTNL+ NA+KFT G + R + E+
Sbjct: 371 LAPAAHAKQLELVSLVYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVAR-AMVED 429
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
++ Q+ R+ G G D R +Q F
Sbjct: 430 EEEDSVQL----------RISVQDTGI-----GLSNQDVRALFQAF-------------- 460
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+Q+D+ ++S + G G+ L R
Sbjct: 461 -----SQADN-----SLSRQPGGTGLGLVISKR--------------------------- 483
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA-FKGMKAILV 1203
L E MGG+I S P GS F S L + D+ + LP+A G + ++
Sbjct: 484 -LIEQMGGEIGVDSTPGEGSEFWISLNLPKTRDDV---------DDLPSAPLLGRRVAVL 533
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ + ++ L+ G+ + N + ++ + + + A +L + ++ PE
Sbjct: 534 ENHELARQALQHQLEDCGLEVTPFNTLESLTNGITSTHQTEQAIDLA-VLGVTANDIPPE 592
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEAD---KDKYGSIFDIVMCKPIRASTIASSI 852
+L HL + ++ G KV++L + + + KP + ++
Sbjct: 593 ---RLNQHLWDLEH----LGCKVLVLCPTTEQMLFNQSVPNPNSQLQAKPACTRKLRRAL 645
Query: 851 QQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
L+ + P R+ +L VDDN NL + L+ GA V VESG
Sbjct: 646 ADLISPR--PLRSEPGEPLSSRA----PRVLCVDDNPANLLLVQTLLEDMGAKVLAVESG 699
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
AI ++ FD MDVQMP MDG ++T IRQ E ER
Sbjct: 700 YAAIDAVK-QETFDLVLMDVQMPGMDGRQSTEAIRQWE----SERHGT------------ 742
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
LPV+A+TA + ++SGMD Y++KP E QL Q V
Sbjct: 743 PLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVV 783
>gb|EAN70525.1| PAS [Shewanella denitrificans OS217]
ref|ZP_00634969.1| PAS [Shewanella denitrificans OS-217]
Length = 1659
Score = 182 bits (461), Expect = 1e-43
Identities = 182/640 (28%), Positives = 274/640 (42%), Gaps = 14/640 (2%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+ K +A+A AKS FLA SHEIRTPMN + Q+DY ++
Sbjct: 886 LRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTDMTPQQQDYVSKTEVAA 945
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
++L+ L+ND+LD +KI+AGKL V L E ELAV + N+
Sbjct: 946 QSLLGLLNDILDFSKIDAGKLN---------------VDLHPCSLEEIMRELAVLLAANM 990
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
+ I + + LV LA+ ++ QVL +N G +
Sbjct: 991 RRKHIEVLFDLDPSIPELV-----------------LADKQRLQ--QVL---LNLAGNAI 1028
Query: 1679 ESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIE 1500
+ TA G L F + S +V L IS+
Sbjct: 1029 KFTAQGHV-ILQVFNL------------------------------KLSSHKVRLRISVA 1057
Query: 1499 DTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGS 1320
DTG+GI + D++F FMQA+SSTSR +GGTG+GL+I+K L ELMG ++ S GS
Sbjct: 1058 DTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVESQEGQGS 1117
Query: 1319 TFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILL 1140
F F DI + + + +LVD SA++R +
Sbjct: 1118 RFWF---------DIEFELVETPITKSTLTLNNRRVLLVDD----SAMSRKIVAN----- 1159
Query: 1139 QVVNNMNAVVKAFPGQNGAA----GSREKASILFIESDFWRPETDVQLLNHLREQKNGQL 972
+V + VV+A G E+ + + D+ PE LN L +
Sbjct: 1160 TLVTHGAEVVEASGGLEALTLIEQSLEEEKAFDAVVMDWRMPE-----LNGLEAAERIHE 1214
Query: 971 SDGHK---VVLLVTSEA-----DKDKYGSI-FDIVMCKPIRASTIASSIQQLLKVEIAER 819
GHK V+++T+ A + Y S+ F ++ KP T A+ I + L I +
Sbjct: 1215 LCGHKPRPAVIMLTAYAEDLMLESKAYSSLPFVSLLTKP----TTANLILETLDNAIMGK 1270
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-SLLQPP 642
+ + + + L G +ILVV+DN +N +V LK GA V+ E G + + +
Sbjct: 1271 VERGSTKKWAQDNLQGLSILVVEDNALNRQVIDELLKLQGAIVTLAEGGIEGVKQVTDQG 1330
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
FD MD+QMP++DG EAT IR + HLP+LAMTA+
Sbjct: 1331 MDFDIVIMDMQMPDIDGLEATRLIR-------------------ADGRFEHLPILAMTAN 1371
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTD 342
E C+++GM+ ++ KP D +L V R++ T D
Sbjct: 1372 ASAIDRENCLRAGMNDHIGKPVDMSEL---VPRILTLTRD 1408
>ref|ZP_00660379.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Nocardioides sp. JS614]
gb|EAO04824.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Nocardioides sp. JS614]
Length = 836
Score = 181 bits (458), Expect = 2e-43
Identities = 174/631 (27%), Positives = 262/631 (41%), Gaps = 10/631 (1%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R+ + +AEAA AKS FLAT SHEIRTPMNGV TQ+ YA+
Sbjct: 72 REAVRARKEAEAATAAKSAFLATMSHEIRTPMNGVIGLTRLLLDTELDETQRRYAKGLSE 131
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G L+T L+DD++ ++ +E A F
Sbjct: 132 AGTTLLT---------------------------LIDDILDFSKIEAGMLDLERAPF--- 161
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
DP R + LV N+ + V +EA L + G
Sbjct: 162 --------DPRRTLDAVAGLVANSAARKDVELV-----------VEAVPDLPAGLVGDEA 202
Query: 1685 RVESTA-NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAI 1509
R+ N A N + F G+ + + +
Sbjct: 203 RLRQVLLNLASNAVK-------------FTSTGEVVIRATLDRSGQPA--ASPGETPVRF 247
Query: 1508 SIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPS 1329
+ DTG+GIP AQ R+F F QA++ST+R YGGTG+GL+IS+ L LMGG I F S
Sbjct: 248 EVVDTGIGIPQAAQARLFRSFTQAEASTTRRYGGTGLGLAISRRLVRLMGGTIGFESQEG 307
Query: 1328 VGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLG 1149
GSTF F+ L + D S D+ + +P +A+LVD + V L G
Sbjct: 308 HGSTFWFAVPLTAADLDTSRDADPA--RGIPA---DARALLVDDNATQRRVLGAQLTEAG 362
Query: 1148 ILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQL 972
+ V AV+ AA + + +++ ++S P D +++L + + L
Sbjct: 363 LRTDVTGRPEAVLTL---MRAAAAAADPYAVVLVDSRL--PGVDGLEVLAAI--GADPAL 415
Query: 971 SDGHKVVLLVTSEADKDK-YGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPS 795
D V+L T+E D D + V+ KP+R S + S + +LL A + P+
Sbjct: 416 RDSRPVLLSATAELDHDAVLRAGVSTVVTKPVRLSELRSRLTELL-APPAPTAPEPDAPA 474
Query: 794 FLRSLLVGK-------NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR 636
R + +LV +DN +N VA L + G V GK+A++ +
Sbjct: 475 PPRGSAPSRGSAPSRGRVLVAEDNSINQLVAEGLLTRLGFEVDLAGDGKEAVAAV-ARQS 533
Query: 635 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 456
+ A MD QMP MDG++AT +IR E+ LP++AMTA
Sbjct: 534 YTAVLMDGQMPIMDGYQATAEIRSREVGT-------------------RLPIIAMTASAT 574
Query: 455 QATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ + +GMDG+V+KP D L + +S+
Sbjct: 575 EDDKRRALAAGMDGFVAKPVDAATLDRVLSQ 605
>gb|AAK54094.2| histidine kinase DhkE [Dictyostelium discoideum]
Length = 1699
Score = 178 bits (452), Expect = 1e-42
Identities = 117/366 (31%), Positives = 184/366 (50%), Gaps = 8/366 (2%)
Frame = -2
Query: 2201 QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITL 2022
+ E + AK FL T SHE+RTP+NG+ TQ+D+ + L+ L
Sbjct: 664 RTEELNQAKINFLTTVSHEVRTPINGILASVEILDGSQLDVTQRDFLSCIKQSADYLLDL 723
Query: 2021 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 1842
I D+LD +KIEAGK EL+ V F+L +++++ +++ ++E+ IE+ F+ +VP ++IG
Sbjct: 724 ITDILDFSKIEAGKFELDRVEFNLITMLEESINIVYRTAQERGIEVLTFIDPDVPIILIG 783
Query: 1841 DPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE--NSNMEANQVLHGAMNGKGGRVESTA 1668
DP+R +Q + N + NA+KF +G V V+V + + N+N N + N +
Sbjct: 784 DPYRVKQCVLNFLSNAIKFPHKGQVMVKVTIVDPINNNNNNNNNNNNNNNNNNNNNNNNN 843
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
N N + GF + N+ N+ + L+ S+ED+GV
Sbjct: 844 NNNNNKIVGFSNNNNNNN------------------NNNNNGNNGILNFKLSFSVEDSGV 885
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GI + D +FTPF Q S R Y GTG+GLSISK L LMGG+I S VGS F+F
Sbjct: 886 GIKEEVLDCLFTPFHQLGGS-PRKYLGTGLGLSISKKLTTLMGGEIGVKSVYGVGSAFSF 944
Query: 1307 SATLKH------SYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
++ L S + + S +L PT K I D +++ + LK + I
Sbjct: 945 TSILSTTSTTPISLQSLGSSLSIALNNLSPTIPKISGFIYDDNIHTSNSLFNF-LKLMNI 1003
Query: 1145 LLQVVN 1128
L+++N
Sbjct: 1004 NLKIIN 1009
Score = 73.2 bits (178), Expect = 7e-11
Identities = 42/124 (33%), Positives = 66/124 (53%)
Frame = -2
Query: 770 KNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDG 591
+N L+VDD ++N +V A L++ +VS E+G +A+ + FD FMD QMP +DG
Sbjct: 1574 RNALIVDDTELNRKVLAQLLRRMDWSVSFAENGIEALKEITSERCFDIIFMDCQMPILDG 1633
Query: 590 FEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGY 411
FE T +R EL+ N + N ++A++AD + + C GM+GY
Sbjct: 1634 FETTKLLRLRELENNWKPLN----------------IVALSADSSSSFGQVCFDCGMNGY 1677
Query: 410 VSKP 399
+ KP
Sbjct: 1678 LGKP 1681
>emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
hybridprotein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 1364
Score = 178 bits (452), Expect = 1e-42
Identities = 126/398 (31%), Positives = 203/398 (51%), Gaps = 9/398 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D ++ L S+ DTG+GI + Q +F+PF+QAD+STSR YGG+G+GL+IS+ L ELMGG
Sbjct: 791 DPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGG 850
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F TL+ S A P A + + A+ + P R +
Sbjct: 851 ELEVESVPGRGSEFYFVVTLEKS--------------APPQAQRELPALPPEAMP-RVLI 895
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS----ILFIESDFWRPETDVQL 1008
H L L+++ + V A A + E A+ I ++ WR D+
Sbjct: 896 ADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLLD---WR-MPDIDG 951
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSE----ADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+ RE + H V+++VT+ ++ D VM KP+ + + ++QLL
Sbjct: 952 VAIAREIRARATPGPHPVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRLVEQLL 1011
Query: 839 KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
+ R P+F+ L G ++L+VDD+ +N VA L+ GA V+ G+ A+
Sbjct: 1012 EQRPGTRPAT---PTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAV 1068
Query: 659 SLL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
S L + P+ F MDVQMP +DG+EAT ++RQ+ A+ LP
Sbjct: 1069 STLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------------LP 1109
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
V+A+TA + E+ +++GM+G+++KPF+ E+L A+
Sbjct: 1110 VIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAI 1147
Score = 115 bits (288), Expect = 1e-23
Identities = 60/148 (40%), Positives = 84/148 (56%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
A++A+ +KS FLA SHEIRTPMN + +D R L+ +I
Sbjct: 637 AKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKIDRSARTLLEII 696
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAG+++LE PFDL L D++ L S K +E+ V + ++GD
Sbjct: 697 NDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGD 756
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRV 1755
R Q+L NLVGNA+KFTE+G V + V
Sbjct: 757 ALRINQVLVNLVGNAIKFTEQGEVVLSV 784
>ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231]
gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231]
Length = 715
Score = 175 bits (444), Expect = 1e-41
Identities = 125/395 (31%), Positives = 202/395 (51%), Gaps = 3/395 (0%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
++ L ++ DTG+GIP + +F F QAD ST+R +GGTG+GL+IS L +LMGG+
Sbjct: 211 NNAANLHFTVTDTGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGR 270
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
I S GS F F T+K S ++ L P ++A++VD +
Sbjct: 271 IWAESELGCGSDFHF--TMKFSLAAERPAEAQPLEAVFP---DNVRALIVDDNATNRLIL 325
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP-ETDVQLLNHL 996
L G+ ++ AV + A +R ++ +D P E L +
Sbjct: 326 NEMLGNWGM---QATSVAAVAEGLAALRTAYAARRPFRLVI--TDCHMPGEDGFDLAEKI 380
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIV--MCKPIRASTIASSIQQLLKVEIAE 822
++ +GQLSD V+L SE + +V + KP++ S + +I L +++AE
Sbjct: 381 KQ--DGQLSDIQLVMLTSGSEPGDIAHCEQLGVVAHLLKPVKQSELFDAIGSALGLQVAE 438
Query: 821 RKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP 642
+ + L++L IL+ +D+ VN ++A A LKK+G +V +GK+A+++
Sbjct: 439 EEAPLDEVQQLKAL----RILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVFD-R 493
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
RFD MDVQMPEMDG EAT +R E AN +R H+P++A+TA
Sbjct: 494 DRFDLVLMDVQMPEMDGLEATAAVRAKE--ANSDR---------------HVPIIALTAH 536
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
++ E+C+++GMDGYVSKP +L+ ++ L+
Sbjct: 537 AMKGDREQCLEAGMDGYVSKPIRAPELFNTIAALI 571
Score = 136 bits (342), Expect = 7e-30
Identities = 82/218 (37%), Positives = 116/218 (53%)
Frame = -2
Query: 2258 YSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXX 2079
Y R + + ++ K A+AA VAK FLA SHEIRTPMN +
Sbjct: 37 YERIQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDLTD 96
Query: 2078 TQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSRE 1899
TQ++Y + G +L++L+ND+LD +KIEAGKLELE+ F LR + D + + ++
Sbjct: 97 TQREYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHG 156
Query: 1898 KCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQ 1719
K IELA V VP ++GD R RQI+ NLVGNA+KFT +G V + V +N AN
Sbjct: 157 KGIELACHVHPEVPDALLGDASRLRQIVVNLVGNAIKFTTQGEVVLDVAYESPTNNAAN- 215
Query: 1718 VLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQY 1605
LH + G + + + FE AD + Q+
Sbjct: 216 -LHFTVTDTG--IGIPTDKLESIFDSFEQADMSTTRQF 250
>emb|CAD24778.1| histidine kinase-like protein [Oryza sativa]
Length = 182
Score = 175 bits (443), Expect = 1e-41
Identities = 96/197 (48%), Positives = 126/197 (63%)
Frame = -2
Query: 1964 VPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKF 1785
VPFDLR++ DD++SLF K++EK +ELAV+V D VP+++IGDP R RQI+TNLVGN++KF
Sbjct: 3 VPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKF 62
Query: 1784 TERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQY 1605
TERGH+++ V + E M +V G N NTLSG+ A+RR SW+
Sbjct: 63 TERGHIYLTVHVVEEV-MSCLEVETGIQN-------------TNTLSGYPVANRRCSWE- 107
Query: 1604 FXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSST 1425
++ SD ++L IS+EDTGVGIP +AQ RVFTPFMQ S
Sbjct: 108 ----SIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSI 163
Query: 1424 SRNYGGTGIGLSISKCL 1374
+R +GGTGIGLSI KCL
Sbjct: 164 ARIHGGTGIGLSIXKCL 180
>gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri
str. 306]
ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 1364
Score = 174 bits (442), Expect = 2e-41
Identities = 125/398 (31%), Positives = 199/398 (50%), Gaps = 9/398 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D ++ L S+ DTG+GI + Q +F+PF+QAD+STSR YGG+G+GL+IS+ L ELMGG
Sbjct: 791 DPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGG 850
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F TL+ K + R L P A R +
Sbjct: 851 ELEVESVPGRGSEFYFVVTLE---KSAPLQAQRELPVLPPEAMP------------RVLI 895
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS----ILFIESDFWRPETDVQL 1008
H L L+++ + V A A + E A+ I ++ WR D+
Sbjct: 896 ADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLLD---WR-MPDIDG 951
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSE----ADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+ RE + H V+++VT+ ++ D VM KP+ + + ++QLL
Sbjct: 952 VAIAREIRARATPGPHPVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRLVEQLL 1011
Query: 839 KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
+ R P+F+ L G ++L+VDD+ +N VA L+ GA V+ G+ A+
Sbjct: 1012 EERPGARPAT---PTFVARRLEGAHLLLVDDSDINCEVAQRILEGEGAMVTVAHDGEQAV 1068
Query: 659 SLL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
S L + P+ F MDVQMP +DG+EAT ++RQ+ A+ LP
Sbjct: 1069 STLKRAPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------------LP 1109
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
V+A+TA + E+ +++GM+G+++KPF+ E+L A+
Sbjct: 1110 VIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAI 1147
Score = 115 bits (288), Expect = 1e-23
Identities = 60/148 (40%), Positives = 84/148 (56%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
A++A+ +KS FLA SHEIRTPMN + +D R L+ +I
Sbjct: 637 AKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKIDRSARTLLEII 696
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAG+++LE PFDL L D++ L S K +E+ V + ++GD
Sbjct: 697 NDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGD 756
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRV 1755
R Q+L NLVGNA+KFTE+G V + V
Sbjct: 757 ALRINQVLVNLVGNAIKFTEQGEVVLSV 784
>dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
7421]
ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
7421]
Length = 856
Score = 173 bits (438), Expect = 5e-41
Identities = 124/388 (31%), Positives = 178/388 (45%), Gaps = 5/388 (1%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXT-QKDY 2064
+ E + + AEAA K++FLAT SHEIRTPMNGV Q+D
Sbjct: 463 LAEQNAALARARQAAEAASRTKNEFLATMSHEIRTPMNGVIGLADVLLADGGLTHRQRDS 522
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+T + G L+T+IND+LD +K E+G +ELE FDL +L+ V L ++ +K ++L
Sbjct: 523 IETIRASGETLLTIINDILDFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQL 582
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
+ VP+ V+GD R RQIL NL+GNA
Sbjct: 583 CCTLHGQVPQAVVGDAARLRQILVNLIGNA------------------------------ 612
Query: 1703 MNGKGGRVESTANGAF--NTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDS 1530
V+ T +GA N + AA+ W+
Sbjct: 613 -------VKFTTSGAVSVNVTAARPAAEPPQKWE-------------------------- 639
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
L ++ DTG+GIP + DR+F PF Q D+ST+R YGGTG+GL+I K LAELM G+I
Sbjct: 640 ----LHFAVRDTGIGIPAERMDRLFKPFSQVDASTTRRYGGTGLGLAICKRLAELMDGRI 695
Query: 1349 SFTSHPSVGSTFTFS--ATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
S P GSTF+F+ A + S ++ LP ++ +L + P+ V
Sbjct: 696 WVESEPGRGSTFSFTIVAAAATDAPAPAPPVEASWSKPLP-----LRILLAEDNPLNQKV 750
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQ 1092
L+RLG V + V++A Q
Sbjct: 751 ALQLLRRLGYRANVATDGEEVLRALRRQ 778
Score = 69.3 bits (168), Expect = 1e-09
Identities = 42/138 (30%), Positives = 68/138 (49%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
IL+ +DN +N +VA L++ G + G++ + L+ R+D MDVQMP +DG E
Sbjct: 738 ILLAEDNPLNQKVALQLLRRLGYRANVATDGEEVLRALRR-QRYDLVLMDVQMPMIDGLE 796
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
AT +I A R ++A+TA + C+++GMDG++S
Sbjct: 797 ATRRIASEFAAAERPR------------------IIALTAGATLQDEQACLRAGMDGFIS 838
Query: 404 KPFDEEQLYQAVSRLVVG 351
KP +L +A+ R G
Sbjct: 839 KPIRIGELRRALERWGTG 856
>dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 1364
Score = 172 bits (436), Expect = 9e-41
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 9/398 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D ++ L S+ DTG+GI + Q +F+PF+QAD+STSR YGG+G+GL+IS+ L ELMGG
Sbjct: 791 DPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGG 850
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F TL+ K R L P A R +
Sbjct: 851 ELEVESVPGRGSEFYFVITLE---KSAPPQEQRDLPSLPPEAMP------------RVLI 895
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS----ILFIESDFWRPETDVQL 1008
H L L+++ + V A A + E A+ I ++ WR D+
Sbjct: 896 ADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLLD---WR-MPDIDG 951
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSE----ADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+ RE + H V+++VT+ ++ D VM KP+ + + +QL+
Sbjct: 952 VAIAREIRARATPGPHPVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRLFEQLM 1011
Query: 839 KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
R P+F+ L G ++L+VDD+++N VA L+ GA V+ G+ A+
Sbjct: 1012 DQRPGTRAAT---PTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVAHDGEQAV 1068
Query: 659 SLL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
S L + P+ F MDVQMP +DG+EAT ++RQ+ A+ LP
Sbjct: 1069 STLKRTPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------------LP 1109
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
V+A+TA + E+ + +GM+G+++KPF+ E+L A+
Sbjct: 1110 VIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAI 1147
Score = 115 bits (288), Expect = 1e-23
Identities = 60/148 (40%), Positives = 84/148 (56%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
A++A+ +KS FLA SHEIRTPMN + +D R L+ +I
Sbjct: 637 AKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKIDRSARTLLEII 696
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAG+++LE PFDL L D++ L S K +E+ V + ++GD
Sbjct: 697 NDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGD 756
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRV 1755
R Q+L NLVGNA+KFTE+G V + V
Sbjct: 757 ALRINQVLVNLVGNAIKFTEQGEVVLSV 784
>ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
Length = 648
Score = 172 bits (436), Expect = 9e-41
Identities = 166/624 (26%), Positives = 270/624 (43%), Gaps = 15/624 (2%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+ +E+ + + A+ AKS FLA SHEIRTP+NGV + + Q A
Sbjct: 128 KALEKQVLERQRAEAAKSAFLANMSHEIRTPLNGVIGMLELVADEPLSDKLQQFLQIASN 187
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
+L+ +IND+LD +KIEAGK++++ V F+L + +D+++ F + +K I L
Sbjct: 188 SAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIASFIPAANKKAISLIFDSSH 247
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
+V D R RQIL NL+ NA+KFTE+G V V V L + + A V
Sbjct: 248 LETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKIDSQTAQLVCK-------- 299
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
+T G EA ++ F QSDS +++
Sbjct: 300 --------VLDTGIGIEAHVIAKLFEPF-------------------QQSDS---SISRR 329
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
TG+G+ + Q L LMGG+++ +S
Sbjct: 330 FGGTGLGLAIAKQ------------------------------LCHLMGGELTLSSKVGK 359
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGM---KAILVDGRPVRSAVTRYHLKR 1155
GS F F L +TE +P++ + + + ++ + +SA+ + L+
Sbjct: 360 GSCFEFEILL--------------VTENIPSSQQFLHTSRCLIAESNRTQSALLQKQLET 405
Query: 1154 LGILLQVVNNMNAVVKAFPG-QNG-AAGSREKASILFIESDFWRPETDVQLLNHLREQKN 981
G V++ F Q G A + + LFI + + +N ++++
Sbjct: 406 WGA---------TVIRTFDSTQTGLALAANPRFDHLFIAEKLFL--ANKIFINTWQKEQQ 454
Query: 980 GQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQ--------LLKVEIA 825
GQ+ +VL + DKY + + KP+ + I S + + L K A
Sbjct: 455 GQV-----IVLQDHWQESLDKYNTWH---LTKPLFKTQILSVLHKHRPRNTVSLPKTASA 506
Query: 824 ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL-- 651
++ N +R + ILVV+DN +N VA LKK G + VE G+ A+ L
Sbjct: 507 KQTANTSRNH--------QCILVVEDNPINQIVAKECLKKLGYQYAVVEHGQAALDYLNT 558
Query: 650 QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
P + + MD QMP MDGF AT +IR E +T H+P+LA+
Sbjct: 559 HPTPQINLILMDCQMPIMDGFTATAKIRAGE----------------ATEFYQHIPILAL 602
Query: 470 TADVIQATYEECIKSGMDGYVSKP 399
TA+VI++ E C++ GM+ +++KP
Sbjct: 603 TANVIESERERCLQIGMNDFLAKP 626
>ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 1402
Score = 172 bits (436), Expect = 9e-41
Identities = 124/398 (31%), Positives = 196/398 (49%), Gaps = 9/398 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D ++ L S+ DTG+GI + Q +F+PF+QAD+STSR YGG+G+GL+IS+ L ELMGG
Sbjct: 829 DPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGG 888
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F TL+ K R L P A R +
Sbjct: 889 ELEVESVPGRGSEFYFVITLE---KSAPPQEQRDLPSLPPEAMP------------RVLI 933
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS----ILFIESDFWRPETDVQL 1008
H L L+++ + V A A + E A+ I ++ WR D+
Sbjct: 934 ADDHDAALNNLVRIATELGWRVDAVASGQAALQAIEHAAEPYDIFLLD---WR-MPDIDG 989
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSE----ADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+ RE + H V+++VT+ ++ D VM KP+ + + +QL+
Sbjct: 990 VAIAREIRARATPGPHPVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTGAALHRLFEQLM 1049
Query: 839 KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
R P+F+ L G ++L+VDD+++N VA L+ GA V+ G+ A+
Sbjct: 1050 DQRPGTRAAT---PTFVARRLEGVHLLLVDDSEINCEVAQRILEGEGAMVTVAHDGEQAV 1106
Query: 659 SLL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
S L + P+ F MDVQMP +DG+EAT ++RQ+ A+ LP
Sbjct: 1107 STLKRTPNLFHLVLMDVQMPVVDGYEATRRLRQIPALAS-------------------LP 1147
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
V+A+TA + E+ + +GM+G+++KPF+ E+L A+
Sbjct: 1148 VIALTAGAFRPQQEKALAAGMNGFIAKPFNVEELVTAI 1185
Score = 115 bits (288), Expect = 1e-23
Identities = 60/148 (40%), Positives = 84/148 (56%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
A++A+ +KS FLA SHEIRTPMN + +D R L+ +I
Sbjct: 675 AKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKIDRSARTLLEII 734
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAG+++LE PFDL L D++ L S K +E+ V + ++GD
Sbjct: 735 NDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGD 794
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRV 1755
R Q+L NLVGNA+KFTE+G V + V
Sbjct: 795 ALRINQVLVNLVGNAIKFTEQGEVVLSV 822
>ref|ZP_00654688.1| Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Psychrobacter
cryohalolentis K5]
gb|EAO10561.1| Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Psychrobacter
cryohalolentis K5]
Length = 603
Score = 171 bits (434), Expect = 1e-40
Identities = 117/390 (30%), Positives = 192/390 (49%), Gaps = 5/390 (1%)
Frame = -2
Query: 2255 SRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXT 2076
+++ + D K++E + A+ A+ KS FLA SHEIRTPMNG+
Sbjct: 164 AQFATMAADALKLQEQQRNAKYANEMKSAFLANMSHEIRTPMNGIIGMVEMLSDTMLSVE 223
Query: 2075 QKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREK 1896
Q++Y + ++ L+ +IN +LD +K+EAGK+ ++++P +L SL ++VVSLF+ K+R++
Sbjct: 224 QREYIENIKVSNEHLLAIINGILDLSKVEAGKMTIDSIPMNLSSLCNEVVSLFAIKARQR 283
Query: 1895 CIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFT-ERGHVFVRVCLAENSNMEANQ 1719
+ L +++ V GDP R +Q++ NLV NA+KFT E G V + V +++ N+
Sbjct: 284 GLVLDYHYTESLSPYVKGDPVRLKQVMVNLVNNAIKFTREGGRVTIDVKHMQDNPCLDNK 343
Query: 1718 VLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQ 1539
A R++ A D +NS
Sbjct: 344 DCDHAKGNNDSRLDF-------------AIDDKNS------------------------T 366
Query: 1538 SDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMG 1359
+ +TL I + DTGVGI ++ + +F + QA+ T R YGGTG+GLS+ K L ELMG
Sbjct: 367 TIHQEMTLCIEVTDTGVGIKSESLEAIFDAYDQANKYTHRLYGGTGLGLSVCKSLVELMG 426
Query: 1358 GQISFTSHPSVGSTFTFSATL----KHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
G I S +G+TF L Y+ D+ ++T LP+ +LV+
Sbjct: 427 GYIEVDSVVGIGTTFRVLLPLPCIAAEDYEIWQTDNDFTIT--LPSDELVGHILLVEDDS 484
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAF 1101
V + + + L G + VN+ ++ F
Sbjct: 485 VNAMIAKKALNNGGHTVTHVNDGQQAIEIF 514
Score = 68.2 bits (165), Expect = 2e-09
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQP-PHRFDACFMDVQMP 603
LVG +IL+V+D+ VN +A AL G V+ V G+ AI + P R+D MD MP
Sbjct: 473 LVG-HILLVEDDSVNAMIAKKALNNGGHTVTHVNDGQQAIEIFALYPERYDVILMDHHMP 531
Query: 602 EMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSG 423
MDG +AT I+ EL A ++ P++A+TA+ + ++ + G
Sbjct: 532 IMDGVQAT--IKLHELYAPQDLP----------------PIIALTANAMDGERKKYLDVG 573
Query: 422 MDGYVSKPFDEEQL 381
M Y +KPF +EQL
Sbjct: 574 MQDYCTKPFKQEQL 587
>gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. 8004]
ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. 8004]
ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 1364
Score = 171 bits (432), Expect = 2e-40
Identities = 123/399 (30%), Positives = 203/399 (50%), Gaps = 10/399 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D +++ L S+ DTG+GI + Q +F+PF+QAD+STSR YGG+G+GL+IS+ L ELMGG
Sbjct: 791 DPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGG 850
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+ S P GS F F TL+ + D ++ EA A+L R +
Sbjct: 851 ALEVESVPGRGSEFYFVITLERT------DPPKAQQEA---------ALLPPESMPRVLI 895
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS----ILFIESDFWRPETDVQL 1008
H L L+++ + V A A + E A+ I ++ WR D+
Sbjct: 896 ADDHDAALNNLVRIATELGWRVDAVASGQAAMQAIEDATEPYDIFLLD---WR-MPDIDG 951
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSE----ADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+ R+ + H V+++VT+ ++ D VM KP+ ++ + ++QL
Sbjct: 952 VAIARQVRARATPGRHPVIVMVTAYERRLLEQHPEQQDLDAVMTKPVTSAALHRLVEQL- 1010
Query: 839 KVEIAERKD-NQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
+ ER + P+F+ L G +L+VDD+++N VA L+ GA V+ G+ A
Sbjct: 1011 ---VDERPNARPATPTFVARRLEGAQLLLVDDSEINCEVAQRILEGEGAMVTVAHDGEQA 1067
Query: 662 ISLL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
++ L + P F MDVQMP +DG+EAT ++RQ+ A+ L
Sbjct: 1068 VNTLKRAPDLFHLVLMDVQMPVVDGYEATRRLRQIPSLAS-------------------L 1108
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
PV+A+TA + E+ +++GM+G+++KPF+ E+L A+
Sbjct: 1109 PVIALTAGAFRPQQEKALEAGMNGFIAKPFNVEELVTAI 1147
Score = 114 bits (286), Expect = 2e-23
Identities = 60/148 (40%), Positives = 84/148 (56%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
A +A+ +KS FLA SHEIRTPMN + +D R+L+ +I
Sbjct: 637 ARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKIDRSARSLLEII 696
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAG+++LE PFDL L D++ L S K +E+ V + ++GD
Sbjct: 697 NDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGD 756
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRV 1755
R Q+L NLVGNA+KFTE+G V + V
Sbjct: 757 ALRINQVLVNLVGNAIKFTEQGEVVLSV 784
>ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1099
Score = 169 bits (429), Expect = 6e-40
Identities = 118/392 (30%), Positives = 192/392 (48%), Gaps = 11/392 (2%)
Frame = -2
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ DTG+GIP +AQ R+F+ FMQ D+ST+R YGGTG+GL+I + LAELMGG++ S P
Sbjct: 619 VRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGK 678
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
GS F S ++ + A P G + ++VD PV V L+ G+
Sbjct: 679 GSRFWMSVPME----------LLAPQSAAPPDLTGHRVLVVDDNPVNCDVIERQLRAFGV 728
Query: 1145 ----LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNG 978
L + M + +A A G+ + +++ + V+++ +
Sbjct: 729 EVHACLDAGSGMGELTRA-----AAMGTPWEVAVIDSQMPVVTGSEMVRMMRAI------ 777
Query: 977 QLSDGHKVVLLVTS--EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERK---- 816
+ G ++++ + A++ D + KP+R ST+ +I ++L + E +
Sbjct: 778 PMLGGSRIIVTSSQGMPAEQQDGQPAIDAFLHKPLRQSTLLDTIGRVLGLSGPEEQPAAP 837
Query: 815 -DNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
+ N P L ILV +DN VN +VA L+K G V V G +A+ ++
Sbjct: 838 AEEHNAPDSTAKRL---RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVR-LL 893
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
+D MDVQMPEMDG EAT IR + +A +P++AMTA+
Sbjct: 894 PYDVVLMDVQMPEMDGLEATRAIRSL------------------ASAAARIPIVAMTANA 935
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++ + C +GMDGY+SKP D +L +A+++
Sbjct: 936 MRGDDQMCFDAGMDGYISKPIDRHKLAEALAK 967
Score = 139 bits (350), Expect = 8e-31
Identities = 103/336 (30%), Positives = 157/336 (46%), Gaps = 20/336 (5%)
Frame = -2
Query: 2609 ASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNV------YDVTNASDAMVLY 2448
+ + + +EA ++E L E S L D +V + V A+ ++ +
Sbjct: 305 SDITEEIEAADRLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDF 364
Query: 2447 GPSSLD------------EQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLG 2304
P+ L E L+ +L D R + R P+P I +P+
Sbjct: 365 EPAELVGSDILPLMALDMETAESLYQILLRLADSIRDDTASFKRRDGSPLPVEYIASPV- 423
Query: 2303 TFVIWMLLGYSIAAAYSRYDKVTEDC--RKMEELKTQAEAADVAKSQFLATASHEIRTPM 2130
M G + D R++ E K AEA + KS+FLAT SHEIRTPM
Sbjct: 424 -----MDKGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPM 478
Query: 2129 NGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDL 1950
NGV Q+ +A+T + G +L+T+IND+LD +K+EAGKL+L+ F+L
Sbjct: 479 NGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFEL 538
Query: 1949 RSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGH 1770
L++ VV + + ++ K IE+A + + +V DP R RQ+L NL GNAVKFTE+G
Sbjct: 539 VPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGG 598
Query: 1769 VFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANG 1662
V + V L E A ++H + G + A G
Sbjct: 599 VSIEVTLLERPG--AQPMVHFDVRDTGIGIPPEAQG 632
>dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 1018
Score = 168 bits (426), Expect = 1e-39
Identities = 172/630 (27%), Positives = 259/630 (41%), Gaps = 13/630 (2%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA+VAKS FLA SHEIRTPMNGV Q+D T + G +L+
Sbjct: 496 KENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTELDNDQRDLVSTTRESGLSLL 555
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
+++DVLD +KIEAG+LELE VP L +++ VV + + K + L+ FV +P V+
Sbjct: 556 RILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFVDPGLPPVL 615
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
+ DP R RQIL NL GNAVKFT +G V + + +G +G+G ++ S
Sbjct: 616 LADPVRLRQILFNLAGNAVKFTAQGLVAIHMG-------------NGGTDGQGRQILSIR 662
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
+T G +++ R +Q F +S + R TG+
Sbjct: 663 --VADTGIGIDSSLRDRLFQPFTQA-----------------ESSTTR-----RFGGTGL 698
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
G+ SI++ L +LM G F S P VGS+F
Sbjct: 699 GL------------------------------SITRRLVDLMDGTAGFESEPGVGSSFWC 728
Query: 1307 SATLKHSYKDISGDSSRSLTEALP---------TAFKGMKAILVDGRPVRSAVTRYHLKR 1155
L + E++P T F G++ ++VD +R
Sbjct: 729 RLPL-------------PVAESVPPETPIGEQTTDFIGLRILIVDPDTE---------ER 766
Query: 1154 LGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQ 975
I L AVV+ PG A + KA+ D D L
Sbjct: 767 TLIALATEQGGAAVVRV-PGPREAEAASRKATATQAPFDLALITADSVAPEDLAPMGTTP 825
Query: 974 L--SDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERK--DNQ 807
L DG E + G + +P+ + I +++++++ R
Sbjct: 826 LLFIDGQDPAHRFQLERRPNCLG-----FLGRPLTRAQITAAVERIIGPVAQPRPVCAPL 880
Query: 806 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDA 627
+P + G ILV +D+ VN +V L G G A++ + +
Sbjct: 881 PQPEPRSTAWTGAPILVAEDHPVNQQVIRRQLHLLGFPAEVFPDGAAALAAWR-ARPYCL 939
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
D MP MDGF+ T IR E +G+T H P+LA+TA+ +
Sbjct: 940 ILTDCHMPIMDGFQLTAAIRAEE--------------DGTTR---HTPILALTANALAGE 982
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
E C+++GMD Y+SKP + L A+S L+
Sbjct: 983 AERCVQAGMDSYLSKPVELPHLRAAISHLL 1012
>gb|AAP80772.1| MmoS [Methylococcus capsulatus]
Length = 1177
Score = 168 bits (425), Expect = 2e-39
Identities = 120/396 (30%), Positives = 192/396 (48%), Gaps = 3/396 (0%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
++ + R L+ I DTG+GI Q R+F PF QAD STSR +GGTG+GLSI + L ELM
Sbjct: 665 EAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLSICRNLVELM 724
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG I S P GS F F+ L + + G S+ +L + F + ++VD
Sbjct: 725 GGTIGLESAPGRGSRFWFTLPL----EPLPGASAPALPD-----FSHRRVLVVDDNATNR 775
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+ ++L G+ + + + + SR +L D P D L
Sbjct: 776 VILSHYLTHWGLEVDEAERGDTALNRL--RTALHESRPYDIVLL---DLHMPYMDGHELA 830
Query: 1001 HLREQKNGQLSDGHKVVLL---VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVE 831
+ G L D +++L +T EA+ G ++ KP+R S + ++I ++L +
Sbjct: 831 RAMNAEPG-LKDTPRLLLSSGGLTGEAELRALGIARSLL--KPVRQSLLFNAIAEVLAAK 887
Query: 830 IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL 651
++ + + G+ +LVV+DN+VN +V A L K+G ++G+ A+ LL
Sbjct: 888 ATVQRRPAAKTETVLPAYEGRRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELL 947
Query: 650 QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
+D MD QMP + G+EATG++R E+ A R PV+A+
Sbjct: 948 -ARSSYDLVLMDCQMPVLGGYEATGELRAREMSAGGRR----------------TPVVAL 990
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
TA E+C+ +GMD Y+SKP ++L +A+ R
Sbjct: 991 TAHAATGEREKCLAAGMDDYLSKPISRDRLAEALER 1026
Score = 131 bits (330), Expect = 2e-28
Identities = 73/168 (43%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVA--KSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+ ED K A D A KS FLA SHEIRTPMNGV Q D
Sbjct: 498 ILEDRAKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWD 557
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
+TA +L+ +IN +LD +K+EAGK+E+E F+L L+++V +L + ++ +K +E
Sbjct: 558 LVETASNSAESLLEIINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLE 617
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
L F+ ++P++ IGDP R RQILTNL+GN+VKFTERG V V+V E
Sbjct: 618 LNCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERGEVSVKVMQGE 665
>gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
Length = 1177
Score = 168 bits (425), Expect = 2e-39
Identities = 120/396 (30%), Positives = 192/396 (48%), Gaps = 3/396 (0%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
++ + R L+ I DTG+GI Q R+F PF QAD STSR +GGTG+GLSI + L ELM
Sbjct: 665 EAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLSICRNLVELM 724
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG I S P GS F F+ L + + G S+ +L + F + ++VD
Sbjct: 725 GGTIGLESAPGRGSRFWFTLPL----EPLPGASAPALPD-----FSHRRVLVVDDNATNR 775
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+ ++L G+ + + + + SR +L D P D L
Sbjct: 776 VILSHYLTHWGLEVDEAERGDTALNRL--RTALHESRPYDIVLL---DLHMPYMDGHELA 830
Query: 1001 HLREQKNGQLSDGHKVVLL---VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVE 831
+ G L D +++L +T EA+ G ++ KP+R S + ++I ++L +
Sbjct: 831 RAMNAEPG-LKDTPRLLLSSGGLTGEAELRALGIARSLL--KPVRQSLLFNAIAEVLAAK 887
Query: 830 IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL 651
++ + + G+ +LVV+DN+VN +V A L K+G ++G+ A+ LL
Sbjct: 888 ATVQRRPAAKTETVLPAYEGRRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELL 947
Query: 650 QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
+D MD QMP + G+EATG++R E+ A R PV+A+
Sbjct: 948 -ARSSYDLVLMDCQMPVLGGYEATGELRAREMSAGGRR----------------TPVVAL 990
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
TA E+C+ +GMD Y+SKP ++L +A+ R
Sbjct: 991 TAHAATGEREKCLAAGMDDYLSKPISRDRLAEALER 1026
Score = 131 bits (330), Expect = 2e-28
Identities = 73/168 (43%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVA--KSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+ ED K A D A KS FLA SHEIRTPMNGV Q D
Sbjct: 498 ILEDRAKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWD 557
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
+TA +L+ +IN +LD +K+EAGK+E+E F+L L+++V +L + ++ +K +E
Sbjct: 558 LVETASNSAESLLEIINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLE 617
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
L F+ ++P++ IGDP R RQILTNL+GN+VKFTERG V V+V E
Sbjct: 618 LNCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERGEVSVKVMQGE 665
>ref|ZP_00777187.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Pseudoalteromonas atlantica T6c]
gb|EAO66223.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Pseudoalteromonas atlantica T6c]
Length = 903
Score = 167 bits (423), Expect = 3e-39
Identities = 162/625 (25%), Positives = 263/625 (42%), Gaps = 5/625 (0%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E K +AE A V+KS FLA SHEIRTPMNG+ TQ+ +
Sbjct: 378 ELVESKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSDLTPTQRQHLNKVVYS 437
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+ L++LIND+LD +K+EAGKL++E V F L S+ ++++ S++++EK + + F+C
Sbjct: 438 SQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQEKNLNVR-FIC-- 494
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
DP I L+G+ ++ + QVL +N
Sbjct: 495 -------DP----NIPPTLIGDPLRIS--------------------QVL---LNLTSNA 520
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISI 1503
V+ T NG+ + +SD+V L +
Sbjct: 521 VKFTRNGSITISITHDVIP------------------------------NSDKVLLKARV 550
Query: 1502 EDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVG 1323
+DTG+G+ + +VF F QAD +TSR++GGTG+GL+I K L LMGG ++ S +VG
Sbjct: 551 KDTGIGMSKEQLGKVFESFTQADGTTSRDFGGTGLGLTIVKQLVHLMGGNVTAQSELNVG 610
Query: 1322 STFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGIL 1143
STF + T+ I + + P +P R + I
Sbjct: 611 STFEVTFTV------IVQSDEQHIFHIAP-------------QPQRKMYYFSKTPKGLIE 651
Query: 1142 LQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQ-LSD 966
Q NN+ FP EK E+D + L H + Q L D
Sbjct: 652 QQYFNNVEMDYHHFPHM-----QLEKMLPEITENDIVIIDV-ADLAEHKAIGPSIQKLKD 705
Query: 965 GHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQLLKVEIAERKDNQNRP 798
+ V +T + + +I + P + S I LL E + + P
Sbjct: 706 DGRNVGFITDTQPSNLPQKLINIWSFPCLTHPFTPGHLVSFIHSLLNEE--QFVSDIPSP 763
Query: 797 SFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFM 618
F + +IL+V+DN +N V L+ G E+G+ A++ + +D M
Sbjct: 764 QFNEQVEYDGHILLVEDNSINQVVTGEMLRVLGITFDIAENGQQAVTKVINSAHYDVVLM 823
Query: 617 DVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEE 438
D+QMP MDG++AT +IRQ L L + ++A+ ++ + +
Sbjct: 824 DIQMPVMDGYQATIEIRQQGL--------------------LDLVICGLSANAMKEDFVQ 863
Query: 437 CIKSGMDGYVSKPFDEEQLYQAVSR 363
+ GM+ Y++KP L +S+
Sbjct: 864 AKEVGMNEYLTKPLKLVALEDMLSK 888
>ref|ZP_00583064.1| PAS [Shewanella baltica OS155]
gb|EAN42495.1| PAS [Shewanella baltica OS155]
Length = 1784
Score = 167 bits (423), Expect = 3e-39
Identities = 127/409 (31%), Positives = 199/409 (48%), Gaps = 7/409 (1%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ D V L S+ D+G+G+ Q Q ++F F QAD+ST+R YGGTG+GL+I K L ELM
Sbjct: 1187 EQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELM 1246
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG+I S GSTF F+ L S D + + E +GM ++VD
Sbjct: 1247 GGKIGVESQFGHGSTFYFTVKLHIS------DGQKLVLE---QELEGMSVLVVDDNATAR 1297
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+ R L+ +G + V + + Q + E A I + + ET Q+
Sbjct: 1298 DIMRTTLESMGFRVDTVRSGEEAISRCLLQ-----AYEVALIDWKMPNMDGLETARQIQL 1352
Query: 1001 HLREQKNGQ-LSDGHKVVLLVTSEADKDKYGSIFDIVMC----KPIRASTIASSIQQLLK 837
+ Q Q S +L+V++ AD + I + + KPI AS + I +
Sbjct: 1353 QAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDGIMNAIG 1412
Query: 836 VE--IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
E + R+ + L L GK IL+V+DN++NL VA+ L++ G +S +G+ A
Sbjct: 1413 REGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIA 1472
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
+ L H FD MD QMP MDG++AT IR+ AN LP
Sbjct: 1473 LDKLSQQH-FDLVLMDCQMPVMDGYQATQAIRKRPELAN-------------------LP 1512
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSA 336
V+AMTA+ + + CI++GM+ +++KP + LYQ + + + +++A
Sbjct: 1513 VVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAPASETA 1561
Score = 141 bits (355), Expect = 2e-31
Identities = 76/198 (38%), Positives = 114/198 (57%), Gaps = 11/198 (5%)
Frame = -2
Query: 2294 IWMLLGYS-IAAAYSRYDKVTEDCRKMEELKT----------QAEAADVAKSQFLATASH 2148
+WM + S + A +++ M ELK QA+AA AK FLA SH
Sbjct: 993 LWMTVNVSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSH 1052
Query: 2147 EIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELE 1968
EIRTPMN + QK+Y + + ++L+++IND+LD +KIEAGKL+++
Sbjct: 1053 EIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDID 1112
Query: 1967 AVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVK 1788
+VPF L ++++D+ +FS K+ K IEL V NVP+ ++GD R Q+L NL+ NA+K
Sbjct: 1113 SVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIK 1172
Query: 1787 FTERGHVFVRVCLAENSN 1734
FTERG V + + L E +
Sbjct: 1173 FTERGEVLLSLSLVEQQD 1190
>ref|ZP_00849255.1| PAS [Shewanella sp. ANA-3]
gb|EAP21312.1| PAS [Shewanella sp. ANA-3]
Length = 1626
Score = 166 bits (421), Expect = 5e-39
Identities = 130/406 (32%), Positives = 201/406 (49%), Gaps = 13/406 (3%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+++ VT+ SI D+G+GI + +R+FT F QA+SSTSR +GGTG+GL+ISK L ELMGG
Sbjct: 1046 EAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGG 1105
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA-FKGMKAILVDGRPVRSA 1179
Q+ TS VGS F F T EA P A G + ++VD + +
Sbjct: 1106 QLQVTSKVGVGSRFWFDLTFPVME-----------VEANPRADLSGYRILVVDDNQITTE 1154
Query: 1178 VTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQLL 1005
+ L G VV + +A A + ++ ++ ++ WR P+ D +Q
Sbjct: 1155 ILSKILSDYGC---VVETASGGYQAIEKVKQATANAQQFDVVLMD---WRMPDIDGLQTA 1208
Query: 1004 NHLREQKNGQLSD--------GHKVVLLVTSEADKDKYGSI-FDIVMCKPIRASTIASSI 852
L+ G + GH+V+ A+ ++ F + KP+ + +A ++
Sbjct: 1209 EMLKNAGTGSYTPLVVMLTAYGHEVI------AESQHINNVPFVNFLTKPVTSQILAEAV 1262
Query: 851 QQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
++ + D +P R LL G +LVV+DN++N V L GA V E G
Sbjct: 1263 LNAIE---GKTMDANPKPRSQR-LLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGG 1318
Query: 671 KDAIS-LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE 495
+ ++ +L FDA MD+QMP++DG EAT +IR +G
Sbjct: 1319 IEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIR----------------ADGRFD-- 1360
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
LP+LAMTA+ QA +EC+++GM+ +VSKP D +QL + RLV
Sbjct: 1361 -QLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLV 1405
Score = 111 bits (277), Expect = 2e-22
Identities = 71/208 (34%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+ + K +A+ A+ AKS FLA SHEIRTPMN V Q+ Y AQ
Sbjct: 884 KTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQT 943
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
++L+ L+ND+LD +KI+AGKL+L+ P + LM D+ + S+ +E+ +
Sbjct: 944 AAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDS 1003
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV-CLAENSNMEANQVLHGAMNGKG 1689
+P ++ D R +QIL NL GNA+KFT G V V + CL + E+ V ++
Sbjct: 1004 ALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEA--ESVTVQFSIVDSGI 1061
Query: 1688 GRVESTANGAFNTLSGFEAADRRNSWQY 1605
G E F +GFE A+ S ++
Sbjct: 1062 GISEEQIERIF---TGFEQAESSTSRRF 1086
>ref|ZP_00660842.1| PAS [Prosthecochloris vibrioformis DSM 265]
gb|EAO15815.1| PAS [Prosthecochloris vibrioformis DSM 265]
Length = 869
Score = 166 bits (421), Expect = 5e-39
Identities = 125/400 (31%), Positives = 199/400 (49%), Gaps = 8/400 (2%)
Frame = -2
Query: 1541 QSDSDR-VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
Q ++DR V + S+ DTGVGIP + D +F PF QAD ST+R YGGTG+GLSIS LA
Sbjct: 368 QQETDRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQADGSTARKYGGTGLGLSISNHLATR 427
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVR 1185
MGG+I+ SHP GS F+F+ L+ +S+ A T IL V
Sbjct: 428 MGGRINVESHPGEGSVFSFNIVLE----------KQSVQHAPRTLALEHDVILACWSDVL 477
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD--VQ 1011
+ + L G + V + V Q+G+ G ILF++ + E + ++
Sbjct: 478 AGSLKDTLGLWGCGCRRVEGYSEVPDILR-QSGSGGR----FILFLDMRCFGLECEGLIE 532
Query: 1010 LLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFD---IVMCKPIRASTIASSIQQLL 840
+ L+E G +++LLV+ ++++ I + + KP++ + + +
Sbjct: 533 YIEALKE------FTGLRIILLVSVGNREEEFSEICGGNCLFLEKPVQRDELFLMLSDTI 586
Query: 839 KVEIAERKDNQNRPSFLRSLL--VGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+ R ++ S L + G +L+V+D+ VN +VA A L+K G G++
Sbjct: 587 ERMPPARCESAEPQSLLPATAPTAGLVVLIVEDSPVNQQVAVAMLRKLGCEPDVASGGRE 646
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A+ L++ +D FMD QMPEMDG+EATG+IR + ++
Sbjct: 647 ALELMRTT-AYDMVFMDCQMPEMDGYEATGRIRS----------------GSGMKSSRNV 689
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
PV+AMTA+V++ E CI SGMD Y++KP + + +S
Sbjct: 690 PVVAMTANVMKGDRERCIASGMDDYIAKPLQKSDFRRVLS 729
Score = 130 bits (328), Expect = 3e-28
Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
++ E K E++ +A A+VAKSQFLA SHEIRTPMNGV Q+ Y
Sbjct: 202 RLEESVLKTEQMAAEARDANVAKSQFLANMSHEIRTPMNGVIGMADLLLETALDTEQRKY 261
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
AQT R+L+ +IND+LD +KIEA + ELE F+L L+ ++ + ++ E +EL
Sbjct: 262 AQTIIRSARSLLKIINDILDFSKIEANRFELEHSDFELCDLLMEISGILGIEAHESRLEL 321
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE-RGHVFVRVCLAENSN 1734
+V V +P +IGD R RQIL NL+GNAVKFT G V V++ L + ++
Sbjct: 322 SVHVVPEIPTSLIGDSGRIRQILVNLLGNAVKFTPVGGEVGVKLKLQQETD 372
>ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
Length = 1259
Score = 166 bits (420), Expect = 6e-39
Identities = 126/412 (30%), Positives = 199/412 (48%), Gaps = 17/412 (4%)
Frame = -2
Query: 1553 ENSNQSDSDRVT-LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKC 1377
E S S D + + S+EDTG+G+P R+F F Q D+ST+R+YGGTG+GL+I K
Sbjct: 737 ERSVASSHDAIARIRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICKQ 796
Query: 1376 LAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDG 1197
L ELMGG+I S GSTF F+ L+ RS +P +G++ + VD
Sbjct: 797 LVELMGGEIGVESEVGKGSTFWFTLPLQ--------AIERSTCNLIPN-IQGLRVLAVDD 847
Query: 1196 RPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD 1017
+ V + L+ G+ + AG+ +A L ++
Sbjct: 848 NHMNLQVIKEQLQSWGV-----------------EVSTAGNGRRALALLEDAAKRNVPYQ 890
Query: 1016 VQLLNHLREQKNG----QLSDGHKV-----VLLVTSEADKDKYGSIFDIVMC---KPIRA 873
+ +L+HL + +G L + H++ +L++TS + + + M KP+R
Sbjct: 891 LAILDHLMPELDGLRLAHLINDHQMLHETRLLMLTSYEHTIPHAELKKLEMVCLPKPVRQ 950
Query: 872 STIASSIQQLL----KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKK 705
+ + ++ L + E+ +NQ +P R+ L G ILVVDDN++N VA L+
Sbjct: 951 TRLLDALVALTGERSPKQKVEKVENQ-QPVRERAPLEGA-ILVVDDNEINRIVAKEILQS 1008
Query: 704 YGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKL 525
G VS E+G+ A+ +Q +FD MD +MPEMDGF AT IR + + E N
Sbjct: 1009 EGFQVSLAENGRQAVEKIQ-SGQFDLVLMDCEMPEMDGFAATRMIRNLAENGHPELAN-- 1065
Query: 524 ASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
LP++A+TA + E C+ +GM+GYV KP + +L +
Sbjct: 1066 ------------LPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTI 1105
Score = 122 bits (306), Expect = 1e-25
Identities = 70/154 (45%), Positives = 94/154 (61%)
Frame = -2
Query: 2216 EELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGR 2037
+E+K AEAA+ AKS FLA+ SHEIRTP+NGV Q + + A+
Sbjct: 582 DEIKA-AEAANEAKSTFLASMSHEIRTPLNGVIGFLDLLHTTKLDDQQGRFVELAKSSAS 640
Query: 2036 ALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVP 1857
+L+ LIND+LD +KIEAG +ELE F L L++ V +F+ + R +EL V +VP
Sbjct: 641 SLLHLINDILDLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVP 700
Query: 1856 KVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+ IGD R RQ+L NL NAVKFTE G V++RV
Sbjct: 701 QAAIGDCERIRQVLVNLFANAVKFTETGGVYLRV 734
>dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
ref|YP_422801.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
Length = 1117
Score = 165 bits (418), Expect = 1e-38
Identities = 118/389 (30%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Frame = -2
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ DTG+GIP +AQ R+F+ F Q D+ST+R YGGTG+GL+IS+ LAELMGG++ S
Sbjct: 636 VRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGR 695
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
GS F + L+ + A P G + ++VD PV V L+ G+
Sbjct: 696 GSRFWITLPLE----------LLAPQSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGV 745
Query: 1145 ----LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNG 978
L + M + +A A G+ + +++ + V++++ +
Sbjct: 746 EVHACLDAGSGMGELTRA-----AAMGTPWEVAVVDSQMPVVTGSEMVRMIHAI------ 794
Query: 977 QLSDGHKVVLLVTS--EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
+ G ++V+ + AD++ D + KP+R ST+ +I ++L + + +
Sbjct: 795 PMLAGTRIVVTSSQGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADH 854
Query: 803 RPSFLRSLLVGK--NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFD 630
+ S K ILV +DN VN +VA L+K G V V G +A+ ++ +D
Sbjct: 855 AEEYKASEPAAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVR-LLPYD 913
Query: 629 ACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQA 450
MDVQMPEMDG EAT IR + L A + +P++AMTA+ ++
Sbjct: 914 VVLMDVQMPEMDGLEATRAIRALPLAAAQ------------------VPIVAMTANAMRG 955
Query: 449 TYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ C +GMDGY+SKP D +L +A+++
Sbjct: 956 DDQMCFDAGMDGYISKPIDRHKLAEALAK 984
Score = 135 bits (341), Expect = 9e-30
Identities = 72/167 (43%), Positives = 104/167 (62%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R++ E K AEA + KS+FLAT SHEIRTPMNGV Q+ +A+T +
Sbjct: 464 RQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRD 523
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G +L+T+IND+LD +K+EAGKL+L+ F+L L++ VV + + ++ K IE+A +
Sbjct: 524 SGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDP 583
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEA 1725
+ +V DP R RQ+L NL GNAVKFTE+G V + V L + + A
Sbjct: 584 RLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPA 630
>ref|ZP_00474200.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Chromohalobacter salexigens DSM 3043]
gb|EAM22455.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Chromohalobacter salexigens DSM 3043]
Length = 930
Score = 165 bits (417), Expect = 1e-38
Identities = 169/649 (26%), Positives = 271/649 (41%), Gaps = 18/649 (2%)
Frame = -2
Query: 2255 SRYDKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXX 2109
++ D+ T D R+ ME ++ + D+A KSQFLA SHEIRTP+NG+
Sbjct: 236 AQIDQTTFDLRESMETIEVKNIELDMAHRRALEANRIKSQFLANISHEIRTPLNGIIGFC 295
Query: 2108 XXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV 1929
Q+++ + Q L++LI+DVLD +KIEAGKLELE VP D+ +L+D+V
Sbjct: 296 QLLGRSALDSRQREWLEQVQTASDNLLSLISDVLDFSKIEAGKLELETVPVDMVTLVDEV 355
Query: 1928 VSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+ L + ++ K + L V D+VP ++GDP R +QILTNLV NAVKFTERG V VRV L
Sbjct: 356 LGLQAPTAQRKSLHLLGLVYDDVPDQLLGDPLRIKQILTNLVNNAVKFTERGEVVVRVML 415
Query: 1748 AENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXX 1569
+ +N ++ + +T G + R +Q F
Sbjct: 416 DD-------------LNATSSKLRISVR---DTGIGLDLPSRERLFQAF----------- 448
Query: 1568 XXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLS 1389
+Q D+ R + TG+G+
Sbjct: 449 --------SQGDASR---SRKYGGTGLGL------------------------------M 467
Query: 1388 ISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAI 1209
ISK L E MGG I S G+TFTF+ TL I+ L E G +
Sbjct: 468 ISKRLVEQMGGDIDVESESGEGTTFTFTLTL------IATQQRERLPE---VNLSGYRIG 518
Query: 1208 LVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR 1029
L + P + L+R + ++++ A + P + + + E WR
Sbjct: 519 LFEAHPASRHALTHLLERWHARVVLLSSREACSSSTPDLDLLVLGLTQDDLRPREISAWR 578
Query: 1028 PETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIF----DIVMCKPIRASTIA 861
+L+H K L+ AD + + + KP+ ++
Sbjct: 579 -----DVLDHC------------KCPGLLLVNADPFEIPDLALPHGGEITTKPVSRRSLG 621
Query: 860 SSIQQLLKVEIAERKDNQNRPSFLRSLLVG---KNILVVDDNKVNLRVAAAALKKYGANV 690
+++ LL + + PS L + G + +LVVDD N + L+ G
Sbjct: 622 NALSALLLAD--------DVPSALPAPNAGVSPRKVLVVDDTPSNRLLVKELLQDRGLTP 673
Query: 689 SCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
SG++A+++ Q MD+QMP M+G E +R + +E ++
Sbjct: 674 LLAGSGEEALAMAQ-SEPVALVLMDIQMPGMNGVETMRALRDL---GDEWQR-------- 721
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
P++A+TA ++ ++ ++ GM + KP E L + R
Sbjct: 722 -------CPIVALTAHALEEERQQLLRDGMSDCLIKPIREPALDAMLER 763
>ref|ZP_00882427.1| PAS [Shewanella sp. MR-4]
gb|EAP45815.1| PAS [Shewanella sp. MR-4]
Length = 1681
Score = 164 bits (416), Expect = 2e-38
Identities = 171/626 (27%), Positives = 258/626 (41%), Gaps = 9/626 (1%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA+ AKS FLA SHEIRTPMN + Q+DY
Sbjct: 952 KDAAEAANRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSSKQRDYV----------- 1000
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
GK+ A L +++D++ ++ + IE VF D+V
Sbjct: 1001 --------------GKVHQAAG--SLLGILNDILDFSKIEAEKMDIECTVFDLDDV---- 1040
Query: 1847 IGDPWRFRQILTNLVGN-AVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVEST 1671
L+NL + K E+ F+ + L +G G R+
Sbjct: 1041 ----------LSNLANVVSYKVEEKNMAFI---------FDLPPELPRYYHGDGLRLGQI 1081
Query: 1670 ANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTG 1491
N F D Q ++V L +ED G
Sbjct: 1082 LINYCNNAVKFSHND-------------------SSVVLSCQTQQQGEQVELTFCVEDFG 1122
Query: 1490 VGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFT 1311
+GIP Q Q +F F Q D+STSR YGGTG+GL+I K LA LMGG++ S VGS F
Sbjct: 1123 IGIPDQKQGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFY 1182
Query: 1310 FSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV- 1134
TL D+ S ++L A G A LV P + H L +QV
Sbjct: 1183 LRLTLN------CADTYES--QSLFDALAGETAKLVGLHPRLEKLLTEH--GLAAKMQVA 1232
Query: 1133 VNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKV 954
V N+V++ SR + +L S F +LL+ L + ++
Sbjct: 1233 VAETNSVIEEL------KHSRTRQLVLCDYSAF-----SPELLDALTANPDSRM------ 1275
Query: 953 VLLVTSEADKDKYGSIFD-----IVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSF- 792
LLV + +D+D + + + KP+ I +++ LL + Q S
Sbjct: 1276 -LLVGNLSDQDALRPLIENNPRVLSQTKPLTPIAIGNALLSLLGHNNENGRQMQQDHSLH 1334
Query: 791 -LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMD 615
L++ L G +L+V+DN++N +A L + G NV+ G +AI ++ + FD MD
Sbjct: 1335 ALKTQLAGAEVLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIDRIEQQY-FDCVLMD 1393
Query: 614 VQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEEC 435
QMP +DG+EAT +IR++ AN LP+LAMTA+ + E+
Sbjct: 1394 CQMPVLDGYEATRRIRELPQFAN-------------------LPILAMTANAMSGDIEKA 1434
Query: 434 IKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ GM+ ++KP + LY ++R +
Sbjct: 1435 LAVGMNDQITKPVHVKDLYTVMARWI 1460
>ref|ZP_00773511.1| PAS [Pseudoalteromonas atlantica T6c]
gb|EAO69808.1| PAS [Pseudoalteromonas atlantica T6c]
Length = 1042
Score = 164 bits (416), Expect = 2e-38
Identities = 161/648 (24%), Positives = 285/648 (43%), Gaps = 20/648 (3%)
Frame = -2
Query: 2246 DKVTEDCRKMEE---LKT-QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXX 2079
+K+ + ++EE L+T + + A KS F++ SHE+RTP+NG+
Sbjct: 487 EKIKQANAELEEKVALRTVELQKASGIKSAFISNISHEMRTPLNGIIGTLNLVKREHLSE 546
Query: 2078 TQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSRE 1899
Q+ Y + ++ L TL+NDVLD +KIEAGKL+L+ PF+ +L++ + + K++E
Sbjct: 547 NQQRYIEMTEVSVNTLSTLVNDVLDLSKIEAGKLDLDIKPFNPVNLIESLCGSMAVKAQE 606
Query: 1898 KCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQ 1719
K +E + V + ++ DP RF QILTNLV NA+KFTE G++ V A ++
Sbjct: 607 KGLEFIIDVSALNYQSMVSDPHRFSQILTNLVNNAIKFTETGYIKVS---AHTELVKDKV 663
Query: 1718 VLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQ 1539
LH A+ G E + N + F +Q
Sbjct: 664 HLHCAIADSG-----------------EGIAKENQDKLFSAF----------------SQ 690
Query: 1538 SDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMG 1359
+DS ++A TG+G+ + Q L L+
Sbjct: 691 ADS---SVASKHGGTGLGLSICRQ------------------------------LVTLLK 717
Query: 1358 GQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMK-AILVDGRPVRS 1182
G+++FTS + GS F FS IS D++ T + A+ ++ + +
Sbjct: 718 GEVNFTSQKNQGSVFYFS---------ISADANLCQLSPPSTCLANISTAVFIEHKALYQ 768
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+ T ++ LG + + + K F + + S + + I+ + D+ L+
Sbjct: 769 S-TCQMIEALGGTITPAESFD---KMFAAEMPSTWSEPRVDYIVID----QQHPDLMALD 820
Query: 1001 HLREQKNGQLSDGHKVVLLVTSEADKDKY-GSIFDIVMCKPIRASTIASSIQQLLKVEIA 825
+ + + DG V+L+ + + + +I V+ KPI + + +L +
Sbjct: 821 D-KWLECIAIDDGSAKVVLLKRDGEPTAWLKNIKPTVLTKPILRTEFLQKVTRLNTNSSS 879
Query: 824 ERKDNQNRPSFLR----------SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
+ NRP + + G +LVVDDN++N+ VA L + + +
Sbjct: 880 IEAASVNRPPEINGQIENPPGDFEKIKGARVLVVDDNEINVEVAKGVLSRLPVTLLQATN 939
Query: 674 GKDAISLLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
GK+A+ L R MD QMP M+G+EA+ +IR+ E+ E KN
Sbjct: 940 GKEALQQLILAERRNEVIHCVLMDCQMPIMNGYEASQRIRKGEV--GELYKN-------- 989
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+P++AMTA+ + +C+ +GMD Y++KP +E+ + + V++
Sbjct: 990 ------IPIIAMTANAMLGERNKCLSAGMDDYLTKPVNEDIMQEKVTK 1031
>ref|ZP_00054434.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
MS-1]
Length = 514
Score = 164 bits (415), Expect = 2e-38
Identities = 126/396 (31%), Positives = 194/396 (48%), Gaps = 7/396 (1%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
S R + + DTG+GIP A R+F+ FMQ D+ST+R YGGTG+GL+ISK L E+MGG
Sbjct: 27 SGRKLVRFDVRDTGIGIPEDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGT 86
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA---FKGMKAILVDGRPVRS 1182
I S P VGS FTFS + + E P + +G + ++VD P+
Sbjct: 87 IGVESTPGVGSLFTFSLPFE-------------VVEGAPASRPCLEGRRVLVVDDSPINR 133
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSRE--KASILFIESDFWRPETDVQL 1008
V L+ GI V+ +A A AA ++E +A+IL D P
Sbjct: 134 DVLERQLRGFGI--HAVSCPDAT-SALEEIRRAAATQEPWEAAIL----DARMPGISGMD 186
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKV-- 834
L L +N G K+V+ + + D + KP+R TI + ++L +
Sbjct: 187 LAGLI--RNEPALGGLKLVIASSQGLAAGDSPASADAFIHKPLRRQTILGILARVLGIAH 244
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL 654
+ A ++ P+ + V ILV +DN VN +VA L+K G +V G +A+
Sbjct: 245 DAALPDSAESEPAAPQQTGVRLRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEA 304
Query: 653 LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLA 474
++ +D MDVQMPEMDG +AT IR ++ G + +P++A
Sbjct: 305 VRA-RPYDLVLMDVQMPEMDGLQATNAIR---------------ALSGPPS---RIPIVA 345
Query: 473 MTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
MTA+ ++ + C+ +GMD Y+SKP D ++L ++
Sbjct: 346 MTANAMRGDDKMCLDAGMDSYISKPIDRQKLMDVLA 381
>ref|ZP_00853212.1| PAS [Shewanella sp. MR-7]
gb|EAP25279.1| PAS [Shewanella sp. MR-7]
Length = 1681
Score = 164 bits (415), Expect = 2e-38
Identities = 171/626 (27%), Positives = 258/626 (41%), Gaps = 9/626 (1%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA+ AKS FLA SHEIRTPMN + Q+DY
Sbjct: 952 KDAAEAANRAKSDFLANMSHEIRTPMNAILGMSYLVLQTELSSKQRDYV----------- 1000
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
GK+ A L +++D++ ++ + IE VF D+V
Sbjct: 1001 --------------GKVHQAAG--SLLGILNDILDFSKIEAEKMDIECTVFDLDDV---- 1040
Query: 1847 IGDPWRFRQILTNLVGN-AVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVEST 1671
L+NL + K E+ F+ + L +G G R+
Sbjct: 1041 ----------LSNLANVVSYKVEEKNMAFI---------FDLPPELPRYYHGDGLRLGQI 1081
Query: 1670 ANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTG 1491
N F D Q ++V L +ED G
Sbjct: 1082 LINYCNNAVKFSHND-------------------SSVVLSCQTQQQGEQVELTFCVEDFG 1122
Query: 1490 VGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFT 1311
+GIP Q Q +F F Q D+STSR YGGTG+GL+I K LA LMGG++ S VGS F
Sbjct: 1123 IGIPEQKQGVLFGSFEQVDASTSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFY 1182
Query: 1310 FSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV- 1134
TL D+ S ++L A G A LV P + H L +QV
Sbjct: 1183 LRLTLN------CADTYES--QSLFDALAGETAKLVGLHPRLEKLLTEH--GLAAKMQVA 1232
Query: 1133 VNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKV 954
V N+V++ SR + +L S F +LL+ L + ++
Sbjct: 1233 VAETNSVIEEL------KHSRTRQLVLCDYSAF-----SPELLDALTANPDSRM------ 1275
Query: 953 VLLVTSEADKDKYGSIFD-----IVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSF- 792
LLV + +D+D + + + KP+ I +++ LL + Q S
Sbjct: 1276 -LLVGNLSDQDALRPLIENNPRVLSQTKPLTPIAIGNALLSLLGHNNENGRQVQQDHSLH 1334
Query: 791 -LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMD 615
L++ L G +L+V+DN++N +A L + G NV+ G +AI ++ + FD MD
Sbjct: 1335 ALKTQLAGAEVLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIERIEQQY-FDCVLMD 1393
Query: 614 VQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEEC 435
QMP +DG+EAT +IR++ AN LP+LAMTA+ + E+
Sbjct: 1394 CQMPVLDGYEATRRIRELPEFAN-------------------LPILAMTANAMSGDIEKA 1434
Query: 434 IKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ GM+ ++KP + LY ++R +
Sbjct: 1435 LAVGMNDQITKPVHVKDLYTVMARRI 1460
>ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
Length = 1235
Score = 163 bits (413), Expect = 4e-38
Identities = 122/403 (30%), Positives = 194/403 (48%), Gaps = 8/403 (1%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ + + TL S+ DTG+GI + + +FTPFMQ DSS +R YGGTG+GL+IS+ L ELM
Sbjct: 626 EQHNQQSTLRFSVIDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELM 685
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG+I S +VGS F F+ L DS ++ KGM+A++VD +
Sbjct: 686 GGRIWVESQLNVGSQFHFTCKL------TLNDSEKTPLMPFHNRLKGMRALVVDDNAMAR 739
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
V L LG+ + V + A + A + ++F++ W +
Sbjct: 740 EVLADILTSLGLEVTTVADGYAGIDEL---EKACSKQTPYDVVFLD---WNIPGINGVET 793
Query: 1001 HLREQKNGQLSDGHKVVLLVTSEADK---DKYGSIFDIVMCKPIRASTIASSIQQLLKVE 831
+ ++N ++ ++++ + DK D + ++ KP+ AS I ++ ++ E
Sbjct: 794 ASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDASCIHDNLVEIFFQE 853
Query: 830 IAERKDNQNRPSFLR-----SLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
R Q R L S L K +L+VDD+ +N VA+ L G VS +G+
Sbjct: 854 KTSRTCAQKRELNLNNSLDLSALRDKKVLIVDDSILNREVASEFLLDVGIQVSTANNGQQ 913
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A+ ++ H +D MDVQMP MDG AT Q+ RKN L L
Sbjct: 914 ALDMINQYH-YDLVLMDVQMPVMDGLTATKQL----------RKNPL---------HKQL 953
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
P++AMTA Y + +GM+ +++KP D + LY V+R +
Sbjct: 954 PIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWI 996
Score = 130 bits (328), Expect = 3e-28
Identities = 71/173 (41%), Positives = 101/173 (58%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
KV+E ++ E + +AE+A AKS FLA SHE+RTPMN + Q+D+
Sbjct: 460 KVSERTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQLNKRQRDF 519
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+ L+ +NDVLD +KIEA KL L+ PFD+R ++ V ++ + K++ K +EL
Sbjct: 520 MEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVEL 579
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEA 1725
+ + VP IGDP R QIL NL NAVKFTE+G V +RV L E N ++
Sbjct: 580 LLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQGEVIIRVKLLEQHNQQS 632
>ref|YP_476763.1| sensory box histidine kinase/response regulator [Cyanobacteria
bacterium Yellowstone B-Prime]
gb|ABD01500.1| sensory box histidine kinase/response regulator [Cyanobacteria
bacterium Yellowstone B-Prime]
Length = 1526
Score = 163 bits (412), Expect = 5e-38
Identities = 131/455 (28%), Positives = 209/455 (45%), Gaps = 24/455 (5%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
Q + L +S+ DTG+GIP AQ ++F PF Q D+ST+R YGGTG+GL+I K L ELM
Sbjct: 993 QETATHAHLKLSVRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLAICKQLTELM 1052
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHS--YKDISGDSSRSLTEALPTAFKGMKAILVDGRPV 1188
GG IS S GSTF+ TL+ + +S S+R +P +G + + VD
Sbjct: 1053 GGTISLQSQEGQGSTFSVELTLERQPYVQQLSQPSAR-----IPVDLQGKRLLAVDDNAT 1107
Query: 1187 RSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQL 1008
+ R G++++ N + RE D PE D +
Sbjct: 1108 NRKILRCQATTWGMVVEEAENAYQAMDKL-----RQAVREGRPFPLAVLDMQMPEVDGET 1162
Query: 1007 LNHLREQKNGQLSDGHKVVL--LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL-- 840
L + + QL++ V++ L E + F + KP++ S + ++ L
Sbjct: 1163 LGRW-IKADPQLAETQLVMMTSLGLGEHSRRAAEIGFAAYLVKPVKQSRLQEALVMALGK 1221
Query: 839 -----------KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGAN 693
+ + ++RP +SL IL+ +DN VN +VA L+ G
Sbjct: 1222 SSGLSTSLLGMSPVLPQTTPREDRPR--QSL----RILLAEDNPVNQKVALRQLESLGYK 1275
Query: 692 VSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIE 513
V +G++ + LLQ +D MD QMP MDG+EAT ++RQ E ++
Sbjct: 1276 ADVVANGQEVLDLLQKV-SYDLILMDCQMPVMDGYEATRRLRQQERRSG----------- 1323
Query: 512 GSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLY-------QAVSRLVV 354
+ V+A+TA+ +Q E C+++GMD Y+SKP +E L Q +++
Sbjct: 1324 ------HRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLQRLLNHWSQVIAQSAG 1377
Query: 353 GTTDSAV*CSKYDGPDFSFINRSEASPSCLCPADS 249
G+++ A S+ P +R +SP+ P DS
Sbjct: 1378 GSSNQA--ASEAASPASPAESRDPSSPTQPYPIDS 1410
Score = 143 bits (360), Expect = 6e-32
Identities = 77/178 (43%), Positives = 110/178 (61%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++E+ + AE A AKS FLAT SHEIRTPMN V Q+D+ +T ++
Sbjct: 834 ELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRIS 893
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G AL+TLIND+LD +K+EAG++ELE + FDLRS +++V LF+ + K +ELAV +
Sbjct: 894 GDALLTLINDILDFSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPE 953
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKG 1689
VP+ + GD R RQIL NLV NA+KFT +G V ++ + + + A+ L G G
Sbjct: 954 VPRYLRGDASRLRQILNNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKLSVRDTGIG 1011
>ref|ZP_00585950.1| PAS [Shewanella amazonensis SB2B]
gb|EAN39531.1| PAS [Shewanella amazonensis SB2B]
Length = 1236
Score = 162 bits (411), Expect = 7e-38
Identities = 160/639 (25%), Positives = 268/639 (41%), Gaps = 20/639 (3%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K AE A++ KS+FLA SHEIRTPMN + QKDY
Sbjct: 710 EAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQKDY---------- 759
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
LD+A A L LR +++D++ ++ + +E F D V
Sbjct: 760 --------LDKASFSAQSL--------LR-IINDILDFSKIEAGKLELEKVAFPLDKV-- 800
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC------LAENSNMEANQVLHGAMNGK 1692
+ +L NA++ E+G + + + + QVL +N
Sbjct: 801 -----------LDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQVL---INLL 846
Query: 1691 GGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLA 1512
V+ T NG G E R+ R+TL
Sbjct: 847 SNAVKFTQNGEIEL--GCEDVGERDH-----------------------------RITLK 875
Query: 1511 ISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHP 1332
+ DTG+GI + QD++F F QAD ST+R YGGTG+GLSISK L +MGG + S P
Sbjct: 876 FWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEP 935
Query: 1331 SVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRL 1152
VGSTF+F+ + + + ++ + +P ++ ++VD P L
Sbjct: 936 GVGSTFSFTVSFE------IAEEAKVVPMVVPERLASLRTLVVDDNPT----------AL 979
Query: 1151 GILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQ-KNG 978
I V+ + + V+ A K + + D+ PE D +Q+++ + E G
Sbjct: 980 QIYSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEMDGIQVIDAIDEMVAEG 1039
Query: 977 QLSDGHKVVLLVTSEADKDKYGSIFDIVMC---KPIRASTIASSI---------QQLLKV 834
+L+ ++++ A+ K D V KP +AS++ I + L
Sbjct: 1040 KLAARPVIIIMTAYAAEPLKVDLDSDRVFAMLQKPFKASSLFDEIIRAFAPPAPKALPAP 1099
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL 654
+ + ++Q +L+V+DN +N +VA LK G V ++G+ ++ +
Sbjct: 1100 PVEDEGEHQG------------VVLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEM 1147
Query: 653 LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLA 474
+ +DA MD+QMP MDG A ++R K S + LP++A
Sbjct: 1148 V-GKRSYDAILMDIQMPVMDGLTAATELR------------KRYSFD-------ELPIIA 1187
Query: 473 MTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
MTA + E+ + +GM+ +++KP +L++ +S +
Sbjct: 1188 MTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLSHWI 1226
>ref|YP_476201.1| sensory box histidine kinase/response regulator [Cyanobacteria
bacterium Yellowstone A-Prime]
gb|ABD00938.1| sensory box histidine kinase/response regulator [Cyanobacteria
bacterium Yellowstone A-Prime]
Length = 1523
Score = 162 bits (410), Expect = 9e-38
Identities = 132/447 (29%), Positives = 207/447 (46%), Gaps = 16/447 (3%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
Q + V L +S+ DTG+GIP AQ ++F PF Q D+ST+R YGGTG+GL+I K L ELM
Sbjct: 993 QETATHVQLRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLGLAICKQLTELM 1052
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHS--YKDISGDSSRSLTEALPTAFKGMKAILVDGRPV 1188
GG+I S GSTF+ TL+ + IS +R +P +G + ++VD
Sbjct: 1053 GGRIFLESEEGRGSTFSLELTLERQPYARQISQQPAR-----IPVDLQGKRLLVVDDNAT 1107
Query: 1187 RSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQL 1008
+ RY G++++ N + +RE D PE D +
Sbjct: 1108 NRKIVRYQATAWGMVVEEAENAYQALDKL-----RQAAREGIPFPLAVLDMQMPEVDGET 1162
Query: 1007 LNHLREQKNGQLSDGHKVVL--LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKV 834
L + + +LS V++ L E + F + KP++ + + ++ L
Sbjct: 1163 LGRW-IKADPELSQTQLVMMTSLGLGEHSRRAAEIGFAAYLTKPVKQTRLQEALVMALGK 1221
Query: 833 EIAERKD--------NQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVE 678
+Q+ PS R IL+ +DN VN +VA L+ G V
Sbjct: 1222 SSGLATSLLGMGPPLSQSAPSASRP-QQPLRILLAEDNPVNQKVALRQLQSLGYMADVVA 1280
Query: 677 SGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTA 498
+G++ + LLQ ++D MD QMP MDG+EAT ++RQ E GS
Sbjct: 1281 NGQEVLDLLQRV-QYDLILMDCQMPVMDGYEATRRLRQQE--------------RGS--- 1322
Query: 497 EYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS----RLVVGTTDSAV* 330
+ V+A+TA+ +Q E C+++GMD Y+SKP +E L + ++ R+ T +A
Sbjct: 1323 GHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLERVLNHWSQRIAPSATGAANG 1382
Query: 329 CSKYDGPDFSFINRSEASPSCLCPADS 249
+ D P N + A P+ P D+
Sbjct: 1383 PASPDPPSAEGANGNSA-PTLPYPIDA 1408
Score = 142 bits (359), Expect = 7e-32
Identities = 74/162 (45%), Positives = 104/162 (64%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++E+ + AE A AKS FLAT SHEIRTPMN V Q+D+ +T ++
Sbjct: 834 ELEQARKAAEQAAQAKSSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVS 893
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G AL+TLIND+LD +K+E G++ELE + FDLRS +++V LF+ + K +ELAV V
Sbjct: 894 GDALLTLINDILDFSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPE 953
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENS 1737
VP+ + GD R RQIL NLV NA+KFT +G V ++ L + +
Sbjct: 954 VPRYLRGDASRLRQILNNLVSNAIKFTHQGEVVIQAELMQET 995
>ref|ZP_00835661.1| PAS [Shewanella sp. PV-4]
gb|EAP04200.1| PAS [Shewanella sp. PV-4]
Length = 1230
Score = 162 bits (409), Expect = 1e-37
Identities = 161/632 (25%), Positives = 263/632 (41%), Gaps = 12/632 (1%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K AE+A++ KS+FLA SHEIRTPMN + Q DY
Sbjct: 710 EAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQADY---------- 759
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
LD+A A L LR +++D++ ++ + +E F D V
Sbjct: 760 --------LDKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKV-- 800
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVC------LAENSNMEANQVLHGAMNGK 1692
+ L NA+K E+G + + E + QVL +N
Sbjct: 801 -----------LDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVL---INML 846
Query: 1691 GGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLA 1512
V+ T +G G E R+ R+TL
Sbjct: 847 SNAVKFTQSGEIEL--GCEDVGERDH-----------------------------RITLK 875
Query: 1511 ISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHP 1332
+ DTG+GI + Q+ +F F QAD ST+R YGGTG+GLSISK L +MGG + S
Sbjct: 876 FWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSEL 935
Query: 1331 SVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRL 1152
VGSTF+F+ + + + + +P +K ++VD P L
Sbjct: 936 GVGSTFSFTISFE------IAEEAEVKPLIVPEVIGNLKTLVVDDNPT----------AL 979
Query: 1151 GILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQ 975
I + + + V A E + + D+ PE D V+++ L
Sbjct: 980 QIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVEVIKALDAMVADG 1039
Query: 974 LSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQLLKVEIAERKDNQ 807
+ V++++T+ A + + D+ ++ KP +AS + +++ I + K N
Sbjct: 1040 RLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASAL---FDEIIAAFIDKPKINP 1096
Query: 806 NRPSFLRSLLVGK-NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFD 630
+ G IL+V+DN +N +VA LK G V E+G+ A+ ++ ++D
Sbjct: 1097 AAALPVEGNATGTGQILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVD-AKQYD 1155
Query: 629 ACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQA 450
A MD+QMP MDG AT ++R+ K LPV+AMTA +
Sbjct: 1156 AVLMDIQMPVMDGLTATKELRKRYTKE-------------------ELPVIAMTAHAMSG 1196
Query: 449 TYEECIKSGMDGYVSKPFDEEQLYQAVSRLVV 354
E+ + +GM+ +++KP +L+ +++ +V
Sbjct: 1197 DREKSLAAGMNAHITKPIVLNELFDTLAQWIV 1228
>gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter
sulfurreducens PCA]
ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter
sulfurreducens PCA]
Length = 589
Score = 161 bits (408), Expect = 2e-37
Identities = 103/304 (33%), Positives = 147/304 (48%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AE A AKS+FLA SHEIRTP+NGV Q+ + A+ AL+
Sbjct: 182 KEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQLVLDTELGDEQRHCLEMAKRSADALL 241
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
L+ND+LD ++IEA K+ E+ PFDL + ++ V + + ++R K + + V + +VP V
Sbjct: 242 RLVNDILDFSRIEARKMVFESRPFDLTACVNSAVEILAFEARRKGLAVMVRMGPDVPAAV 301
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
+GD R RQ+L NL+GNAVKFT+R G+VE TA
Sbjct: 302 VGDEARLRQVLVNLIGNAVKFTDR-----------------------------GKVEVTA 332
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
A QSD R + IS+ DTG+
Sbjct: 333 ARA-------------------------------------ERQSDPLRTAIRISVRDTGI 355
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GI Q ++R+F F Q D + +R +GGTG+GL++++ + E MGG I S GSTFT
Sbjct: 356 GIAPQERERLFRVFSQVDGACNRRFGGTGLGLALTRDIVEAMGGAIDVESQSGQGSTFTI 415
Query: 1307 SATL 1296
+ L
Sbjct: 416 TIPL 419
Score = 70.5 bits (171), Expect = 5e-10
Identities = 38/136 (27%), Positives = 65/136 (47%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
IL+ +D+ + + L++ G +A+ + FD MDVQMP +DG+E
Sbjct: 466 ILLAEDDPITRKFMEIMLERRNFEFESASDGHEAVEKWEAGE-FDVVLMDVQMPRLDGYE 524
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
ATG IR+ E P++A+TA ++ + C+ +GMDGY+S
Sbjct: 525 ATGLIRERERDRGRRT-----------------PIIALTAHAMRKDEDRCLDAGMDGYLS 567
Query: 404 KPFDEEQLYQAVSRLV 357
KP D +L + + ++
Sbjct: 568 KPIDFTKLMECIGEIL 583
>ref|ZP_00815187.1| PAS [Shewanella putrefaciens CN-32]
gb|EAO93472.1| PAS [Shewanella putrefaciens CN-32]
Length = 1771
Score = 161 bits (408), Expect = 2e-37
Identities = 126/401 (31%), Positives = 197/401 (49%), Gaps = 7/401 (1%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
N + +D VTL S+ D+G+G+ + Q ++F F QAD+ST+R YGGTG+GL+I K L
Sbjct: 1181 NLVEQQNDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLV 1240
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
ELMGG I S GSTF F+ L+ S S + LT + +GM ++VD
Sbjct: 1241 ELMGGNIGVESQFGHGSTFYFTVKLQIS-------SGQKLT--VGQELEGMSVLVVDDNA 1291
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-V 1014
+ R L+ +G + V V E A L D+ P D +
Sbjct: 1292 TARDIMRTALESMGFNVDTVRTGEEAV-------SRCIQHEYAVALI---DWKMPSMDGL 1341
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQ 846
+ +++Q + +L+V++ A+ + I + + KPI AS + I
Sbjct: 1342 EAARQIQQQ-----AKAAPRILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMN 1396
Query: 845 LLKVE--IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
L + R+ N+ L L GK +L+V+DN++NL VA L++ G +S +G
Sbjct: 1397 ALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEFLEQVGIILSIATNG 1456
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
+ A+ L +D MD QMP MDG++AT IRQ + +LA
Sbjct: 1457 QIALDKLS-QQSYDLVLMDCQMPVMDGYQATMAIRQ---------RPELA---------- 1496
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
HLPV+AMTA+ + E C+++GM+G+++KP + LYQ +
Sbjct: 1497 HLPVIAMTANAMAGDKEMCLRAGMNGHIAKPIEVNILYQTL 1537
Score = 139 bits (349), Expect = 1e-30
Identities = 69/158 (43%), Positives = 99/158 (62%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K +A+AA AK FLA SHEIRTPMN + QK+Y + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
++IND+LD +KIEAGKL+++AVPF L ++++D+ +FS K K +EL V NVP+ +
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSN 1734
GD R Q+L NL+ NA+KFTERG V + + L E N
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQN 1187
>ref|ZP_00855004.1| PAS [Shewanella sp. MR-7]
gb|EAP23642.1| PAS [Shewanella sp. MR-7]
Length = 1767
Score = 161 bits (407), Expect = 2e-37
Identities = 125/407 (30%), Positives = 203/407 (49%), Gaps = 7/407 (1%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
N + +D V L S+ D+G+G+ + Q ++F F QAD+ST+R YGGTG+GL+I K L
Sbjct: 1181 NLVEQQNDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLV 1240
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
ELMGG I S GSTF F+ L+ S S + LT A +GM ++ D
Sbjct: 1241 ELMGGTIGVESQFGHGSTFYFTVKLQIS-------SGQKLTVA--QELEGMSILVADDNA 1291
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-V 1014
+ R L+ +G + V + V S+++ ++ I D+ P D +
Sbjct: 1292 TARDIMRTTLESMGFRVDTVRSGEEAV--------TRCSQQEYAVALI--DWKMPNLDGI 1341
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQ 846
+ ++ QL+ +L+V++ A ++ I + + KPI AS + I
Sbjct: 1342 ETAKQIK-----QLAKNAPRILMVSAHATQEFLSQIEALGLAGYISKPISASRLLDGIMN 1396
Query: 845 LL--KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
L + R+++++ L L GK IL+V+DN++NL VA L++ G +S +G
Sbjct: 1397 SLGRAGVLPVRRNSESIDPKLLLPLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNG 1456
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
+ A+ L FD MD QMP MDG++AT IR ++ +LA
Sbjct: 1457 QIALDKL-AQQSFDLVLMDCQMPVMDGYQATQAIR---------KRPELA---------- 1496
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVG 351
LPV+AMTA+ + E C+K+GM+ +++KP + LYQ + + + G
Sbjct: 1497 ELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYLGG 1543
Score = 143 bits (360), Expect = 6e-32
Identities = 85/241 (35%), Positives = 128/241 (53%), Gaps = 11/241 (4%)
Frame = -2
Query: 2294 IWMLLGYS-IAAAYSRYDKVTEDCRKMEELKT----------QAEAADVAKSQFLATASH 2148
+WM + S + + R++ M ELK +A+AA AK FLA SH
Sbjct: 990 LWMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDELLVAKEEADAASKAKGDFLANMSH 1049
Query: 2147 EIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELE 1968
EIRTPMN + QK+Y + + ++L+++IND+LD +KIEAGKL++E
Sbjct: 1050 EIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIE 1109
Query: 1967 AVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVK 1788
+VPF L ++++D+ +FS K+ K +EL V NVP+ + GD R Q+L NL+ NA+K
Sbjct: 1110 SVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIK 1169
Query: 1787 FTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQ 1608
FTERG V + + L E N + VL ++ G + TA F AD + +
Sbjct: 1170 FTERGEVLLSLNLVEQQNDDV--VLRFSVRDSG--IGLTAEQQAKLFKSFSQADTSTTRK 1225
Query: 1607 Y 1605
Y
Sbjct: 1226 Y 1226
>ref|ZP_00828155.1| COG2202: FOG: PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
Length = 1522
Score = 161 bits (407), Expect = 2e-37
Identities = 131/415 (31%), Positives = 206/415 (49%), Gaps = 15/415 (3%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
DS VTL + DTG+GI + Q+ +F+ F QA++ST+R +GGTG+GL IS+ LMGG
Sbjct: 917 DSHHVTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGG 976
Query: 1355 QISFTSHPSVGSTFTFSATLK-HSYKD-ISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
++ S P GS F F+ TL SY + + + + + A ++ ++VD P
Sbjct: 977 TLTLESQPGQGSLFHFTLTLSLPSYTNLVINNETPDTLVSRAQALNNLRVLVVDDNPTAC 1036
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD----V 1014
+ + + L ++ V + N ++ Q+ S LFI D+ P D
Sbjct: 1037 DLIQRMGESLKWVVDVATSGNDALQLMRQQH---ESGITYGALFI--DWQMPGLDGWQTS 1091
Query: 1013 QLLNHLREQKNG----QLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQ 846
+ + L NG ++ + +LL SE D+ ++ D + KPI AS + S+
Sbjct: 1092 KCVRELMPVDNGPMIVMITAHDREMLLQRSEEDQ----ALLDGYLVKPITASMLLDSVID 1147
Query: 845 LLKVEIAERKD-NQNRPSFLRSL--LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
L +ERK + +P SL L G +L+V+DN N ++A L+ GA VS
Sbjct: 1148 AL----SERKQPDVAKPVIAESLHRLSGIRLLIVEDNLNNQQIARELLEDEGAEVSIANH 1203
Query: 674 GKDAISLLQ-PPHRFDACFMDVQMPEMDGFEATGQIRQ-MELKANEERKNKLASIEGSTT 501
GK+AI +L+ P FD MD+QMP MDG+ AT IR+ + LK
Sbjct: 1204 GKEAIEILEHHPSSFDLVLMDLQMPIMDGYNATKYIRKSLGLK----------------- 1246
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSA 336
+LP++AMTA+ + + + C+ +GM+ ++ KPFD L + R G TD A
Sbjct: 1247 ---NLPIIAMTANAMSSDRDACLAAGMNDHIGKPFDLNNLIHII-RKYSGQTDVA 1297
Score = 127 bits (319), Expect = 3e-27
Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVA---KSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+T+ + LKT EAA+ A KS FLA SHE+RTPMN + Q
Sbjct: 747 ITQQREAEDILKTAREAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQA 806
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
DYA ++ R L+ L+ND+LD +KIE+GK+ELE +PFD+ ++ D+ + SS + K +
Sbjct: 807 DYAVKSEAATRTLLRLLNDILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKV 866
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHV--FVRVCLAENSNMEANQV 1716
E+ + ++P+ V GD R +QILTNL GNA+KFTE G V F++V ++ ++
Sbjct: 867 EVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHV----T 922
Query: 1715 LHGAMNGKG-GRVESTANGAFNTLSGFEAADRR 1620
LH + G G F+ + EA+ R
Sbjct: 923 LHFGVRDTGIGIAPENQESIFSGFTQAEASTTR 955
>ref|ZP_00527745.1| PAS [Chlorobium phaeobacteroides DSM 266]
gb|EAM35872.1| PAS [Chlorobium phaeobacteroides DSM 266]
Length = 1398
Score = 160 bits (406), Expect = 3e-37
Identities = 126/417 (30%), Positives = 202/417 (48%), Gaps = 15/417 (3%)
Frame = -2
Query: 1544 NQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
++++ D V L S++DTG+GIP DR+F F Q D+ST+R YGGTG+GL+IS+ L EL
Sbjct: 1012 SENNGDAV-LRFSVKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVEL 1070
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPT-AFKGMKAILVDGRPV 1188
MGG+I SH GS F F+ LK S E PT AF G++A++VD
Sbjct: 1071 MGGKIGVISHEGNGSEFWFTIFLKK-------QPFYSTIETQPTSAFAGIRALVVDDNAA 1123
Query: 1187 RSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQL 1008
+ + L L I + + +A A A S + ++ I D P+ D +
Sbjct: 1124 NRKMLKALLSSLDIRVTEASGGDA---ALGELRSAFKSGDPFALAII--DMQMPDMDGFM 1178
Query: 1007 LNH-LREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVE 831
L ++E + ++ + + T ++ + + F + KP+ + ++I ++ V
Sbjct: 1179 LGQTIKEDLLLRNTELFLMSPVGTLNQREEYHRAGFSANLSKPVGQLELVAAINKV--VF 1236
Query: 830 IAERKDNQNRPSFLRSLL---------VGK----NILVVDDNKVNLRVAAAALKKYGANV 690
+ + PS + VGK IL+ +D++VN V L K+G V
Sbjct: 1237 NHDNQSGSRNPSISYPVTEEGEPPMVPVGKLEHYRILLAEDSRVNQMVVIGVLTKFGYGV 1296
Query: 689 SCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
V +G++ + +LQ +D MDVQMP MDG ATG IR
Sbjct: 1297 DVVSNGQECVDVLQ-KRTYDLVLMDVQMPVMDGLNATGIIRD----------------PA 1339
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDS 339
S ++++PV+A+TA +Q E C+ +GM+ Y+SKP D L + +S+ + DS
Sbjct: 1340 SKVLDHNIPVIALTAHAMQGDRESCLYAGMNDYISKPIDASVLTETISKWLPVKPDS 1396
Score = 140 bits (354), Expect = 3e-31
Identities = 83/194 (42%), Positives = 114/194 (58%), Gaps = 1/194 (0%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
AE+A+ AKS+FLA SHEIRTPMNGV Q+D+A G +L+T+I
Sbjct: 861 AESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDLSDEQRDFADMLLASGESLLTVI 920
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEAGKLELE + FDLR L++ ++ K+ EK +E V VP GD
Sbjct: 921 NDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNLEFNCVVSPEVPVFFKGD 980
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKG-GRVESTANG 1662
P R RQIL NL GNA+KFT+ G+V V V + +N +A VL ++ G G E+ +
Sbjct: 981 PGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGDA--VLRFSVKDTGIGIPEAKLDR 1038
Query: 1661 AFNTLSGFEAADRR 1620
F + + +A+ R
Sbjct: 1039 LFKSFTQVDASTTR 1052
>ref|ZP_00882182.1| PAS [Shewanella sp. MR-4]
gb|EAP46058.1| PAS [Shewanella sp. MR-4]
Length = 1767
Score = 160 bits (404), Expect = 4e-37
Identities = 124/401 (30%), Positives = 200/401 (49%), Gaps = 7/401 (1%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
N + +D V L S+ D+G+G+ + Q ++F F QAD+ST+R YGGTG+GL+I K L
Sbjct: 1181 NLVEQQNDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLV 1240
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
ELMGG I S GSTF F+ L+ S S + LT A +GM ++ D
Sbjct: 1241 ELMGGTIGVESQFGHGSTFYFTVKLQIS-------SGQKLTVA--QELEGMSILVADDNA 1291
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-V 1014
+ R L+ +G + V + V S+++ ++ I D+ P D +
Sbjct: 1292 TARDIMRTTLESMGFRVDTVRSGEEAV--------TRCSQQEYAVALI--DWKMPNLDGI 1341
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQ 846
+ ++ QL+ +L+V++ A ++ I + + KPI AS + I
Sbjct: 1342 ETAKQIK-----QLAKNAPRILMVSAHATQEFLSQIEALGLAGYISKPISASRLLDGIMN 1396
Query: 845 LL--KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
L + R+++++ L L GK IL+V+DN++NL VA L++ G +S +G
Sbjct: 1397 SLGRAGVLPVRRNSESIDPKLLLPLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNG 1456
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
+ A+ L FD MD QMP MDG++AT IR ++ +LA
Sbjct: 1457 QIALDKL-AQQSFDLVLMDCQMPVMDGYQATQAIR---------KRPELA---------- 1496
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
LPV+AMTA+ + E C+K+GM+ +++KP + LYQ +
Sbjct: 1497 ELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTL 1537
Score = 143 bits (360), Expect = 6e-32
Identities = 85/241 (35%), Positives = 128/241 (53%), Gaps = 11/241 (4%)
Frame = -2
Query: 2294 IWMLLGYS-IAAAYSRYDKVTEDCRKMEELKT----------QAEAADVAKSQFLATASH 2148
+WM + S + + R++ M ELK +A+AA AK FLA SH
Sbjct: 990 LWMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDELLVAKEEADAASKAKGDFLANMSH 1049
Query: 2147 EIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELE 1968
EIRTPMN + QK+Y + + ++L+++IND+LD +KIEAGKL++E
Sbjct: 1050 EIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIE 1109
Query: 1967 AVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVK 1788
+VPF L ++++D+ +FS K+ K +EL V NVP+ + GD R Q+L NL+ NA+K
Sbjct: 1110 SVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIK 1169
Query: 1787 FTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQ 1608
FTERG V + + L E N + VL ++ G + TA F AD + +
Sbjct: 1170 FTERGEVLLSLNLVEQQNDDV--VLRFSVRDSG--IGLTAEQQAKLFKSFSQADTSTTRK 1225
Query: 1607 Y 1605
Y
Sbjct: 1226 Y 1226
>ref|ZP_00832341.1| COG2202: FOG: PAS/PAC domain [Yersinia intermedia ATCC 29909]
Length = 1521
Score = 160 bits (404), Expect = 4e-37
Identities = 130/415 (31%), Positives = 204/415 (49%), Gaps = 15/415 (3%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
DS VTL + DTG+GI + Q+ +F+ F QA++ST+R +GGTG+GL IS+ LMGG
Sbjct: 916 DSHHVTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGG 975
Query: 1355 QISFTSHPSVGSTFTFSATLK-HSYKDISGDSSRSLT-EALPTAFKGMKAILVDGRPVRS 1182
++ S P GS F F+ TL SY ++ ++ + T A A ++ ++VD P
Sbjct: 976 TLALESQPGQGSLFHFTITLPLPSYTNLVINNEKPDTLAARAHALNNLRVLVVDDNPTAC 1035
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD----V 1014
+ + + L + V + N ++ Q+ S LFI D+ P D
Sbjct: 1036 DLIKQMGESLKWTVDVATSGNEALQLMRQQH---DSGITYGALFI--DWQMPGLDGWQTS 1090
Query: 1013 QLLNHLREQKNG----QLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQ 846
+ + L NG ++ + +LL SE D+ ++ D + KPI AS + S+
Sbjct: 1091 KYVRELMPVDNGPMIVMITAHDREMLLQRSEEDQ----ALLDGYLVKPITASMLLDSVID 1146
Query: 845 LLKVEIAERKDNQNRPSFLRS---LLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
L +ERK + L G +L+V+DN N ++A L+ GA+V
Sbjct: 1147 AL----SERKQPDITKQVITEPSHRLSGIRLLIVEDNLNNQQIARELLEDEGADVRIANH 1202
Query: 674 GKDAISLLQ-PPHRFDACFMDVQMPEMDGFEATGQIRQ-MELKANEERKNKLASIEGSTT 501
GK+AI +L+ P FD MD+QMP MDG+ AT IR+ + LK
Sbjct: 1203 GKEAIEILEHHPSLFDLVLMDLQMPVMDGYNATKYIRKSLGLK----------------- 1245
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSA 336
+LP++AMTA+ + + + C+ +GM+ ++ KPFD L Q + R G TD A
Sbjct: 1246 ---NLPIIAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQVI-RKYSGKTDVA 1296
Score = 122 bits (307), Expect = 8e-26
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 3/203 (1%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
++ + AE A+ AKS FLA SHE+RTPMN + Q DYA ++
Sbjct: 756 LKTARETAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAAT 815
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
R L+ L+ND+LD +KIE+GK+ LE +PFD+ ++ D+ + SS + K +E+ + +
Sbjct: 816 RTLLHLLNDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPAL 875
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHV--FVRVCLAENSNMEANQVLHGAMNGKG- 1689
P+ V GD R +QILTNL GNA+KFTE G V F++V ++ ++ LH + G
Sbjct: 876 PQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHV----TLHFGVRDTGI 931
Query: 1688 GRVESTANGAFNTLSGFEAADRR 1620
G F+ + EA+ R
Sbjct: 932 GIAPENQESIFSGFTQAEASTTR 954
>ref|NP_901251.1| probable sensor/response hybrid [Chromobacterium violaceum ATCC
12472]
gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
12472]
Length = 664
Score = 159 bits (403), Expect = 6e-37
Identities = 133/411 (32%), Positives = 199/411 (48%), Gaps = 14/411 (3%)
Frame = -2
Query: 1553 ENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCL 1374
+ + +SD+ VT IS++DTG+GI Q R+F PF QADSST+R +GGTG+GL IS+ L
Sbjct: 169 DRAGESDAG-VTCRISVKDTGIGIAPDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRL 227
Query: 1373 AELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGR 1194
+MGG+I S P GS F F+ TL + S ++ P A D
Sbjct: 228 VGMMGGRIELESEPGSGSEFHFTLTLPRA----------SDSQLCPPA--------EDVA 269
Query: 1193 PVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGA-----AGSREKASILFIESDFWR 1029
+R V ++ L IL Q + + + V AF A AG+ + I SD
Sbjct: 270 RMRVLVLDDNVTNLEILEQQLASWHCRVAAFHRPREALDWLTAGN----EVDLIISDMMM 325
Query: 1028 PETD-VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDK----YGSIFDIVMCKPIRASTI 864
PE D + L RE +L + ++++S AD + + V+ KPIR S +
Sbjct: 326 PEMDGLMFLGEARE----RLGEAAPPAIILSSAADDFQKLTGASRLARQVLTKPIRRSDL 381
Query: 863 ASSIQQL----LKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGA 696
+++ QL KVE A +Q R + +L+V+DN VN +A A L+ G
Sbjct: 382 YNALLQLGSAAAKVEPAPDGHDQPR--------LSGRVLLVEDNLVNQELATAMLRNLGC 433
Query: 695 NVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASI 516
V +G++A+ L + FD MD +MP MDG++ATG IR E
Sbjct: 434 EVELARNGEEALRLCE-AGGFDLALMDCEMPVMDGWQATGAIRARERPGGA--------- 483
Query: 515 EGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
L ++A+TA+ E C+++GMD Y+SKPF + +L +SR
Sbjct: 484 --------RLTIVALTANAGLGERERCLQAGMDDYLSKPFTQNELGAVLSR 526
Score = 122 bits (307), Expect = 8e-26
Identities = 69/163 (42%), Positives = 96/163 (58%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E + AEAA+ AKS+FLA SHEIRTP+NGV Q+ Y
Sbjct: 14 QLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTRLDDRQRHYVSVVHRS 73
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G L+ +I+D+LD +KIEAGK EL+ PF L L++++V + + K +EL +
Sbjct: 74 GEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAPVAYGKGLEL-MCALPL 132
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSN 1734
+P V+GD R Q+LTNLVGNA+KFTE GHV +V A S+
Sbjct: 133 MPVEVVGDGKRLGQVLTNLVGNAIKFTESGHVLAKVDRAGESD 175
>emb|CAG23023.1| hypothetical protein [Photobacterium profundum SS9]
ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
Length = 578
Score = 159 bits (402), Expect = 7e-37
Identities = 122/410 (29%), Positives = 191/410 (46%), Gaps = 21/410 (5%)
Frame = -2
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
+ +L SI+DTG+GI Q +VF PF Q D S +R +GGTG+GL+I + L EL+GG I
Sbjct: 210 KASLLFSIKDTGIGIEKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLGGSIE 269
Query: 1346 FTSHPSVGSTFTFSA---TLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
S VGS F FS +K+ K IS F+ K +L+ + + +
Sbjct: 270 LKSEKGVGSDFYFSLDVDVVKYQPKIISN-------------FENKKCLLLSNQSSNAEL 316
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
K+ G+ + + + A V S++ IL+ + R D++L N +
Sbjct: 317 IEIECKKWGLNVTISDIETAAVSGI--------SQQYDLILYCQKTLNRTIKDIELFNRI 368
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIR----ASTIASSIQQLLKVEI 828
+E+ +V+ + ++ +G D + P+ I S+ +LK
Sbjct: 369 QERP--------ALVICSQLQDEQFDFGHTIDGLTILPLLGQRFVKAINSAFTNVLKNSE 420
Query: 827 AERKDNQNRPSFLRSLL-VGKN-----------ILVVDDNKVNLRVAAAALKKYGANVSC 684
+ K N S L + V N IL+V+DN VN +VA+ LKK G +
Sbjct: 421 IQTKSALNPDSRLIDIKPVSINTTPVITESQDVILIVEDNIVNQKVASLLLKKAGYQIVV 480
Query: 683 VESGKDAISLL--QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
+G++A+ L+ + P F A MD MP MDGF AT IR E + + +R
Sbjct: 481 ANNGQEAVDLITQKEPTLFKAILMDCMMPIMDGFAATEAIRLWEKEQHTDR--------- 531
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 360
LP++A+TA V+ +C ++GMD YV+KPF +E L + RL
Sbjct: 532 -------LPIIALTASVLDEDISKCYEAGMDDYVAKPFRKEHLLDKLERL 574
Score = 110 bits (274), Expect = 5e-22
Identities = 59/162 (36%), Positives = 94/162 (58%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K +AE A+ AKS FLA SHEIRTP+NG+ +Q +Y QT + + L+
Sbjct: 51 KEEAEKANAAKSSFLANMSHEIRTPLNGIIGMSGILSDTELNPSQAEYLQTIETSSQTLL 110
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
LIND+LD +KIE+G L L +L ++ D +++ +K+ E+ + L + + +P V
Sbjct: 111 LLINDILDLSKIESGNLVLSPHESNLAEVVYDTITIVQAKASEQGLNLQIQLDPELPTSV 170
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEAN 1722
+ D R RQ+L NL+ NAVKFT +G V + + + + +A+
Sbjct: 171 MLDEHRLRQVLMNLMSNAVKFTLQGSVTLSITYTDIGDKKAS 212
>gb|EAN28637.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00606949.1| PAS [Magnetococcus sp. MC-1]
Length = 1049
Score = 159 bits (401), Expect = 1e-36
Identities = 157/620 (25%), Positives = 263/620 (42%), Gaps = 6/620 (0%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
A AA+ AKS FLA SHEIRTPMN + Q+ Q G AL+ +I
Sbjct: 541 ANAANRAKSAFLAVMSHEIRTPMNSILGMTDLLMEHALDAEQRHALQAIARAGDALMIII 600
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +KIEA +LELE V DL +LM ++ + + +++EK ++L++ + + D
Sbjct: 601 NDILDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCD 660
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGA 1659
R RQIL NL+GNA+KFT +G + V++ G G R+
Sbjct: 661 QVRLRQILVNLIGNAIKFTHQGSIEVKL-----------------SKGPGNRIR------ 697
Query: 1658 FNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIP 1479
F+ D + F E+ NQ DS +++ G G+
Sbjct: 698 FSVSDSGIGIDLQQQEAIF----------------ESFNQGDS-----SVTRRYGGTGLG 736
Query: 1478 LQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFS-- 1305
L R L +LMGG + S P GSTF F+
Sbjct: 737 LSISQR----------------------------LVKLMGGVLKVYSRPGKGSTFFFTIP 768
Query: 1304 -ATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVN 1128
A + H R LT ++ +LV+ PV + T +G LL +
Sbjct: 769 MAPVPH--------LGRHLTHI--QNWEQFHLLLVE--PVGTTST------IGQLLTPLG 810
Query: 1127 NMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVL 948
+ + + + +L I D ET LN +Q + + +L
Sbjct: 811 MQVSHLHELTHISQVVAQLDPIDLLLINLDSVEDET----LNQSLQQVHDHPASARLPLL 866
Query: 947 LVTSEADKDKYGSIFDI---VMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLL 777
L+ E D ++ + I + KP+R + +++ ++ + A ++ + + +
Sbjct: 867 LLLPEPDHTRFEMVKGIGGHCLAKPVRRQGLIDAMELVIGAKHATQE------AKIAGEI 920
Query: 776 VGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEM 597
G IL+ +D+ N+ + + LK ++ V +G +A+ ++ H FD MDVQMP M
Sbjct: 921 KGLKILIAEDSDDNILLLQSYLKGSDHQLTIVRNGLEALQQVE-QHHFDLVLMDVQMPVM 979
Query: 596 DGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMD 417
DG EAT +IR ME + A LP++ +TA + +++G
Sbjct: 980 DGLEATRKIRLMEQQQG---------------ARQPLPIVTLTAHAMLEDKRRSVEAGCT 1024
Query: 416 GYVSKPFDEEQLYQAVSRLV 357
+++KP ++ L +A+++L+
Sbjct: 1025 DHLTKPIKKQVLLKAIAKLM 1044
>ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
Length = 954
Score = 158 bits (400), Expect = 1e-36
Identities = 113/393 (28%), Positives = 187/393 (47%), Gaps = 5/393 (1%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V + +I DTGVGI Q R+F PF Q DSS++RN+GG+G+GL+I L ELMGG++
Sbjct: 461 VRIRFTISDTGVGITPADQKRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLEL 520
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S P VGS F+F+ + SR + LP F GM+ ++VD + R
Sbjct: 521 NSEPGVGSRFSFALLFPRT----RTAESRLRSAILPPEFAGMQVLVVDDNETNRKILREL 576
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
L+ + ++ ++ F + + I D P D L ++
Sbjct: 577 LRSWELDAFTTSDAEEAIRLFSEKQKVGDPFDLVLI-----DALMPGIDGYDLC----KR 627
Query: 983 NGQLSDGHKVVLLVTSEADKDKYGSIFD-----IVMCKPIRASTIASSIQQLLKVEIAER 819
G+++ ++L+ + +D+ + + + KPI AS++ S+ + + IA
Sbjct: 628 LGEVAGKTPPIVLMAAPSDRHHFREREEDLPIRSTLAKPITASSLHDSLVEAM--SIAAP 685
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
+ ++R + S +++V+D N ++ + LKK G V +G++A+ +
Sbjct: 686 ESQRSRSVEVLSSFHALRVMLVEDTAANRKLVTSLLKKRGHIVVEAHNGREALEKFR-DD 744
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
FD MDVQMP MDG + T IRQ+E + E P++AMTA
Sbjct: 745 EFDVILMDVQMPIMDGLQTTAAIRQIEREEGYE----------------PTPIIAMTAHA 788
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 360
+Q E+C+ +GMD Y+SKP D + L + L
Sbjct: 789 MQGDREKCLGAGMDAYISKPIDIDDLLATLESL 821
Score = 128 bits (321), Expect = 2e-27
Identities = 66/159 (41%), Positives = 97/159 (61%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R++++ K AE A+ A+S+FLA SHEIRTPMN + ++Y +TA
Sbjct: 295 RELQKAKAAAERANRARSEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANS 354
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
L++L+ND+LD +KIEAGK ++ F+LR +D + S ++ K +E+A+
Sbjct: 355 SAHTLLSLLNDILDFSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDP 414
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+P+ +IGD R RQI+TNLV NAVKFTERG V + V L
Sbjct: 415 RIPEELIGDAIRLRQIITNLVSNAVKFTERGEVLLSVKL 453
>emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
Length = 1120
Score = 158 bits (400), Expect = 1e-36
Identities = 120/394 (30%), Positives = 191/394 (48%), Gaps = 9/394 (2%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
+D +L SI DTG+GI + +F F QAD+ST+R YGGTG+GL+I K L ELMGG+
Sbjct: 753 TDGTSLVCSIIDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGE 812
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPT-AFKGMKAILVDGRPVRSAV 1176
+S TS + GSTF+FS +K S + LP+ K +++D + S +
Sbjct: 813 VSVTSMLNEGSTFSFSIKIK---------PKLSKQQDLPSHLIKNKHILIIDSCLLNSTI 863
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ L + + AV F Q + + I+ F+ Q +
Sbjct: 864 AKKQLIIWQANANTLTDYTAVSAYFKDQ-----ATTTLDAILIDYYFFEQAPQSQ----I 914
Query: 995 REQKNGQLSDGHKVVLLVTSEADKD--KYGSIFDIVMCKPIRASTIASSIQQLLKVEIAE 822
E KN K++++ KD D ++ KP+ S + S+ +E +
Sbjct: 915 TEVKNYLAKHSCKLIIMAPMSYSKDDSTLSLKVDSMIFKPLTPSDLFDSLANDKYIE-QQ 973
Query: 821 RKDNQNRPSFLRSLLVGKN---ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL 651
++ Q + + LV N +L+V+DNK+N VA A LK+ G + E+G++AI L
Sbjct: 974 QQQAQLQNKLTETPLVNTNEPQVLLVEDNKINQVVAGALLKQAGISFDIAENGREAIKQL 1033
Query: 650 --QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY-HLPV 480
QP + + MD QMPEMDG++AT IR G + Y ++ +
Sbjct: 1034 NEQPANTYQLILMDCQMPEMDGYQATKAIR-----------------NGDSGKHYQNITI 1076
Query: 479 LAMTADVIQATYEECIKSGMDGYVSKPFDEEQLY 378
+A+TA+ +Q E+C+ +GM+ Y+SKP D L+
Sbjct: 1077 IALTANAMQGDKEKCLAAGMNDYLSKPLDFSALH 1110
Score = 115 bits (289), Expect = 9e-24
Identities = 66/179 (36%), Positives = 102/179 (56%)
Frame = -2
Query: 2270 IAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXX 2091
+ + YS ++ + +++ K AE A AKS+FLA+ SHEIRTPMNGV
Sbjct: 577 VGSLYSSQKRIETE-QQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNT 635
Query: 2090 XXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSS 1911
Q + + AQ ++L+ +IND+LD +KIEAGKL++E + F+L L+ +VV F+
Sbjct: 636 KLDQQQMHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFAL 695
Query: 1910 KSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSN 1734
K+ + L + ++ DP R RQIL+NL+ NAVKFT G + V + E ++
Sbjct: 696 KAEQNNTILILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFDGKIVVTAKIDETTD 754
>ref|ZP_01091085.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine
kinase A, N-terminal:Hpt [Blastopirellula marina DSM
3645]
gb|EAQ80186.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine
kinase A, N-terminal:Hpt [Blastopirellula marina DSM
3645]
Length = 837
Score = 158 bits (399), Expect = 2e-36
Identities = 118/400 (29%), Positives = 191/400 (47%), Gaps = 5/400 (1%)
Frame = -2
Query: 1538 SDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMG 1359
S++D + L ++ DTG+GIP A ++F F QAD +T+R +GGTG+GLSI L ELM
Sbjct: 320 SETDAL-LHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLSICSRLVELMH 378
Query: 1358 GQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTE--ALPTAFKGMKAILVDGRPVR 1185
G+I S VGS F F+A L G + S E P + + ++VD
Sbjct: 379 GKIWVESQVHVGSQFHFTAQL--------GIDANSYDERHIPPDDCRQLNVLIVDDNDTC 430
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLL 1005
+ L G+ V+ + + + + K +L I+ E +LL
Sbjct: 431 GEIIAEMLANWGMQPTVIGGAVEAISLYAEE----VTSPKFQLLIIDQQMPVLE-GTELL 485
Query: 1004 NHLREQKNGQLSDGHKVVLLVTSEADKDKYGSI---FDIVMCKPIRASTIASSIQQLLKV 834
+++ G + K +LL T DK+ + D ++ KPI+ S + ++ ++
Sbjct: 486 ERIQKSPRGAAA---KSILLTTGTFDKEPTNPLQARVDAILSKPIKQSDLFDTLMNVMGH 542
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL 654
+A QN + + G+ IL+ +DN VN ++A L+K G V+ GK A+
Sbjct: 543 GVAGDLATQNAGAEPKLGSWGRRILLAEDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEA 602
Query: 653 LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLA 474
+ FD MDVQMP +DG AT +IR+ E T +P++A
Sbjct: 603 WK-EGGFDLVLMDVQMPILDGMAATTEIRRHE-----------------TRTALRIPIIA 644
Query: 473 MTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVV 354
MTA ++ E C+++GMDGYV+KP + + LY A+ ++
Sbjct: 645 MTAHAMKGDRERCLEAGMDGYVTKPINAQALYDAIDEALL 684
Score = 143 bits (361), Expect = 4e-32
Identities = 96/249 (38%), Positives = 134/249 (53%), Gaps = 7/249 (2%)
Frame = -2
Query: 2351 RQKLPMPWSAITNPL------GTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEA 2190
R L P A PL GTF + + + + A S + +D ++ K A+A
Sbjct: 114 RMALSRPRDAAYEPLAIRRQDGTFRVVSV--HMLIQAQSHLLAIAKDV--IQSQKESADA 169
Query: 2189 ADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDV 2010
A+ AK QFLA SHEIRTPMNG+ Q +Y Q + L+++IND+
Sbjct: 170 ANRAKGQFLANMSHEIRTPMNGIIGMTELLLETELAPQQHEYLQMIKTSADCLVSVINDI 229
Query: 2009 LDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWR 1830
LD +KIEAGKLE+E++PF LR + D++ + ++ K +EL V +VP + GDP R
Sbjct: 230 LDFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRMTGDPGR 289
Query: 1829 FRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKG-GRVESTANGAFN 1653
RQIL NLVGNA+KFTE G + VRV + E S E + +LH + G G E+ F
Sbjct: 290 LRQILVNLVGNAIKFTEHGEIVVRVDIDEIS--ETDALLHFTVCDTGIGIPEAALQKIF- 346
Query: 1652 TLSGFEAAD 1626
+ FE AD
Sbjct: 347 --AAFEQAD 353
>dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 992
Score = 158 bits (399), Expect = 2e-36
Identities = 117/392 (29%), Positives = 190/392 (48%), Gaps = 7/392 (1%)
Frame = -2
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
L + DTG+GIP A R+F+ FMQ D+ST+R YGGTG+GL+ISK L E+MGG I S
Sbjct: 510 LRFDVRDTGIGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVES 569
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA---FKGMKAILVDGRPVRSAVTRY 1167
P GS F FS + + E P G + ++VD P+ V
Sbjct: 570 TPGAGSLFWFSLPFQ-------------MVETAPPQRPDLAGRRILVVDDSPINRDVLER 616
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP-ETDVQLLNHLRE 990
L+ G+++ + + + A G+ A G+ +A+I+ D P T L+ +R
Sbjct: 617 QLRGFGVIVASCADAESAL-AELGRAAATGTPWEAAII----DARMPGVTGSDLIGRIRA 671
Query: 989 QKNGQLSDGHKVVLLVTSEADKDKYGS-IFDIVMCKPIRASTIASSIQQLLKV--EIAER 819
+ +++ +S+ + GS D + KP+R TI + + ++L + + +
Sbjct: 672 EP----VLAPMGLIIASSQGLSPEDGSPKADAFIHKPLRRQTILAVLARVLGLPHDPGLQ 727
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
++ P + ILV +DN VN +VA L+K G +V G +A+ ++
Sbjct: 728 DSPESEPEAIPRPARRLRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVR-SR 786
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
+D MDVQMPEMDG +AT IR + T +P++AMTA+
Sbjct: 787 PYDLVLMDVQMPEMDGLQATAAIRAL------------------TGGAERVPIVAMTANA 828
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
++ C+ +GMD Y+SKP D +L + +++
Sbjct: 829 MRGDDRMCLDAGMDRYISKPIDRRKLMEVLAQ 860
Score = 128 bits (322), Expect = 1e-27
Identities = 67/148 (45%), Positives = 94/148 (63%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
AE A+ AK+ FLAT SHEIRTPMNGV Q+ +A T + +L+T+I
Sbjct: 351 AERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAESLLTVI 410
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
ND+LD +K+EAGKL+LE+ F+L L++ +V + + ++ K IE+A V ++P V GD
Sbjct: 411 NDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPAWVRGD 470
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRV 1755
P R RQIL NL GNA+KFT G + + V
Sbjct: 471 PGRLRQILMNLAGNAIKFTSHGGISIEV 498
>gb|AAG07499.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
ref|NP_252801.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
Length = 1417
Score = 158 bits (399), Expect = 2e-36
Identities = 126/392 (32%), Positives = 187/392 (47%), Gaps = 7/392 (1%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D+ V L + + DTG+GI + Q R+F F QA++STSR +GGTG+GL I K L +LMGG
Sbjct: 911 DAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGG 970
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F L D++ D + L A P A + ++ ++ D V +
Sbjct: 971 ELRVESAPGSGSRFWFDLDL-----DVAHD--QPLRAACPGAGEPLRLLVADDNLVAGEL 1023
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ LG V + + V Q A R +L D+ P+ D L
Sbjct: 1024 LERTVGALGWRADCVGSGSEAVARV--QAAMAEGRRYDVVLM---DWRMPDLDGLSAAQL 1078
Query: 995 REQKNGQLSDGHKVVLLVTSE-----AD-KDKYGSIFDIVMCKPIRASTIASSIQQLLKV 834
Q G L +V+++T+ AD +D F + KP+ +A S+ L
Sbjct: 1079 IRQLQGDLPP--PMVIMITAYGREVLADARDHSAPPFVDFLTKPVTPKQLADSVLHALHG 1136
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-S 657
E + RP L G +LVV+DN +N +VAA L GA V+ + G +
Sbjct: 1137 EQGAPANPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGGLAGVQQ 1196
Query: 656 LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVL 477
+L+ FDA MD+QMP++DG EAT +IR A LP+L
Sbjct: 1197 VLEASVPFDAVLMDMQMPDIDGLEATRRIRADGRFAG-------------------LPIL 1237
Query: 476 AMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
AMTA+ A E C+ +GM+ +V+KP D+E+L
Sbjct: 1238 AMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 137 bits (345), Expect = 3e-30
Identities = 75/171 (43%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E K QA+AA AKS FLA SHEIRTPMN V Q+DY A
Sbjct: 750 RLREAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSA 809
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+L+ L+ND+LD +KIEAGKL LE +PF+L LM D+ + S +K +E+ +
Sbjct: 810 ATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPE 869
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV-CLAENSNMEANQVL 1713
+P V+GD R +QIL NL GNA+KFT RGHV V + LA ++++ +VL
Sbjct: 870 LPSAVVGDRLRLQQILINLAGNALKFTARGHVLVSLRRLAHDAHLVRLRVL 920
>ref|ZP_00137562.2| COG2202: FOG: PAS/PAC domain [Pseudomonas aeruginosa UCBPP-PA14]
Length = 1417
Score = 158 bits (399), Expect = 2e-36
Identities = 126/392 (32%), Positives = 187/392 (47%), Gaps = 7/392 (1%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D+ V L + + DTG+GI + Q R+F F QA++STSR +GGTG+GL I K L +LMGG
Sbjct: 911 DAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGG 970
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F L D++ D + L A P A + ++ ++ D V +
Sbjct: 971 ELRVESAPGSGSRFWFDLDL-----DVAHD--QPLRAACPGAGEPLRLLVADDNLVAGEL 1023
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ LG V + + V Q A R +L D+ P+ D L
Sbjct: 1024 LERTVGALGWRADCVGSGSEAVARV--QAAMAEGRRYDVVLM---DWRMPDLDGLSAAQL 1078
Query: 995 REQKNGQLSDGHKVVLLVTSE-----AD-KDKYGSIFDIVMCKPIRASTIASSIQQLLKV 834
Q G L +V+++T+ AD +D F + KP+ +A S+ L
Sbjct: 1079 IRQLQGDLPP--PMVIMITAYGREVLADARDHSAPPFVDFLTKPVTPKQLADSVLHALHG 1136
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-S 657
E + RP L G +LVV+DN +N +VAA L GA V+ + G +
Sbjct: 1137 EQGAPANPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGGLAGVQQ 1196
Query: 656 LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVL 477
+L+ FDA MD+QMP++DG EAT +IR A LP+L
Sbjct: 1197 VLEASVPFDAVLMDMQMPDIDGLEATRRIRADGRFAG-------------------LPIL 1237
Query: 476 AMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
AMTA+ A E C+ +GM+ +V+KP D+E+L
Sbjct: 1238 AMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 137 bits (345), Expect = 3e-30
Identities = 75/171 (43%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E K QA+AA AKS FLA SHEIRTPMN V Q+DY A
Sbjct: 750 RLREAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSA 809
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+L+ L+ND+LD +KIEAGKL LE +PF+L LM D+ + S +K +E+ +
Sbjct: 810 ATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPE 869
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV-CLAENSNMEANQVL 1713
+P V+GD R +QIL NL GNA+KFT RGHV V + LA ++++ +VL
Sbjct: 870 LPSAVVGDRLRLQQILINLAGNALKFTARGHVLVSLRRLAHDAHLVRLRVL 920
>ref|ZP_00973288.1| COG2202: FOG: PAS/PAC domain [Pseudomonas aeruginosa 2192]
Length = 1417
Score = 158 bits (399), Expect = 2e-36
Identities = 126/392 (32%), Positives = 187/392 (47%), Gaps = 7/392 (1%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D+ V L + + DTG+GI + Q R+F F QA++STSR +GGTG+GL I K L +LMGG
Sbjct: 911 DAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGG 970
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F L D++ D + L A P A + ++ ++ D V +
Sbjct: 971 ELRVESAPGSGSRFWFDLDL-----DVAHD--QPLRAACPGAGEPLRLLVADDNLVAGEL 1023
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ LG V + + V Q A R +L D+ P+ D L
Sbjct: 1024 LERTVGALGWRADCVGSGSEAVARV--QAAMAEGRRYDVVLM---DWRMPDLDGLSAAQL 1078
Query: 995 REQKNGQLSDGHKVVLLVTSE-----AD-KDKYGSIFDIVMCKPIRASTIASSIQQLLKV 834
Q G L +V+++T+ AD +D F + KP+ +A S+ L
Sbjct: 1079 IRQLQGDLPP--PMVIMITAYGREVLADARDHSAPPFVDFLTKPVTPKQLADSVLHALHG 1136
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-S 657
E + RP L G +LVV+DN +N +VAA L GA V+ + G +
Sbjct: 1137 EQGAPANPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGGLAGVQQ 1196
Query: 656 LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVL 477
+L+ FDA MD+QMP++DG EAT +IR A LP+L
Sbjct: 1197 VLEASVPFDAVLMDMQMPDIDGLEATRRIRADGRFAG-------------------LPIL 1237
Query: 476 AMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
AMTA+ A E C+ +GM+ +V+KP D+E+L
Sbjct: 1238 AMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 137 bits (345), Expect = 3e-30
Identities = 75/171 (43%), Positives = 102/171 (59%), Gaps = 1/171 (0%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E K QA+AA AKS FLA SHEIRTPMN V Q+DY A
Sbjct: 750 RLREAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSA 809
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+L+ L+ND+LD +KIEAGKL LE +PF+L LM D+ + S +K +E+ +
Sbjct: 810 ATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPE 869
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV-CLAENSNMEANQVL 1713
+P V+GD R +QIL NL GNA+KFT RGHV V + LA ++++ +VL
Sbjct: 870 LPSAVVGDRLRLQQILINLAGNALKFTARGHVLVSLRRLAHDAHLVRLRVL 920
>ref|ZP_00967483.1| COG2202: FOG: PAS/PAC domain [Pseudomonas aeruginosa C3719]
Length = 1417
Score = 158 bits (399), Expect = 2e-36
Identities = 126/392 (32%), Positives = 187/392 (47%), Gaps = 7/392 (1%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D+ V L + + DTG+GI + Q R+F F QA++STSR +GGTG+GL I K L +LMGG
Sbjct: 911 DAHLVRLRVLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGG 970
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ S P GS F F L D++ D + L A P A + ++ ++ D V +
Sbjct: 971 ELRVESAPGSGSRFWFDLDL-----DVAHD--QPLRAACPGAGEPLRLLVADDNLVAGEL 1023
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ LG V + + V Q A R +L D+ P+ D L
Sbjct: 1024 LERTVGALGWRADCVGSGSEAVARV--QAAMAEGRRYDVVLM---DWRMPDLDGLSAAQL 1078
Query: 995 REQKNGQLSDGHKVVLLVTSE-----AD-KDKYGSIFDIVMCKPIRASTIASSIQQLLKV 834
Q G L +V+++T+ AD +D F + KP+ +A S+ L
Sbjct: 1079 IRQLQGDLPP--PMVIMITAYGREVLADARDHSAPPFVDFLTKPVTPKQLADSVLHALHG 1136
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI-S 657
E + RP L G +LVV+DN +N +VAA L GA V+ + G +
Sbjct: 1137 EQGAPANPPPRPVERTQRLRGVRLLVVEDNALNRQVAAELLSSEGARVALADGGLAGVQQ 1196
Query: 656 LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVL 477
+L+ FDA MD+QMP++DG EAT +IR A LP+L
Sbjct: 1197 VLEASVPFDAVLMDMQMPDIDGLEATRRIRADGRFAG-------------------LPIL 1237
Query: 476 AMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
AMTA+ A E C+ +GM+ +V+KP D+E+L
Sbjct: 1238 AMTANASLADREACLAAGMNDHVAKPIDKERL 1269
Score = 137 bits (344), Expect = 4e-30
Identities = 71/154 (46%), Positives = 92/154 (59%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ E K QA+AA AKS FLA SHEIRTPMN V Q+DY A
Sbjct: 750 RLREAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDLNERQRDYLDKASSA 809
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+L+ L+ND+LD +KIEAGKL LE +PF+L LM D+ + S +K +E+ +
Sbjct: 810 ATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDIDPE 869
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFV 1761
+P V+GD R +QIL NL GNA+KFT RGHV V
Sbjct: 870 LPSAVVGDRLRLQQILINLAGNALKFTARGHVLV 903
>dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1462
Score = 157 bits (396), Expect = 4e-36
Identities = 121/398 (30%), Positives = 185/398 (46%), Gaps = 19/398 (4%)
Frame = -2
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
+ ++ DTG+GIPL QDR+F F Q DSST+R YGGTG+GL IS+ L ++MGG ++ TS
Sbjct: 942 ICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTS 1001
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEA-LPTAFKGMKAILVDGRPVRSAVTRYHL 1161
P VGS F F ++ + +L EA KG + ++VD + +
Sbjct: 1002 EPGVGSNFRFCI--------LTTAQAPALAEADSVQQMKGKQVLIVDDNETNRRILQDQC 1053
Query: 1160 KRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQK 984
+ G++ + + + F A A+IL D P D + L +HLR+
Sbjct: 1054 QAWGLVCHCFTSGESALDWF-----ARCPDLDAAIL----DLQMPNMDGITLAHHLRQFA 1104
Query: 983 NGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLK-----VEIAER 819
G+ ++LL + S+F V+ KP+R S I S+ + + + A +
Sbjct: 1105 QGK---DLPIILLSSGLVAGADELSVFQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQ 1161
Query: 818 KDNQNRPSFL------------RSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
D + P F+ SL IL+ +DN VN +VA L G V+ +
Sbjct: 1162 FDQLDLPEFVPDGDGLPTEDNATSLQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANN 1221
Query: 674 GKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE 495
G++ I L+ +D MD+QMP MDG A IRQ + E
Sbjct: 1222 GQEVIDALEKKF-YDLVLMDMQMPVMDGITACRHIRQ------------------TLPLE 1262
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
++AMTA+ + +EC+ +GMDGY+SKP QL
Sbjct: 1263 RQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
Score = 135 bits (339), Expect = 2e-29
Identities = 72/156 (46%), Positives = 97/156 (62%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++E+ AEAA+ AK +FLA SHEIRTPMNGV Q DY QT +
Sbjct: 763 ELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQS 822
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G L+T+IND+LD +KIEA KL LE F+LR L++ V+ +F +R K +EL +
Sbjct: 823 GETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQ 882
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
P ++GD R RQIL+NL+GNA+KFTE+G V + V
Sbjct: 883 TPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTV 918
>ref|ZP_00585281.1| PAS [Shewanella amazonensis SB2B]
gb|EAN40471.1| PAS [Shewanella amazonensis SB2B]
Length = 1763
Score = 157 bits (396), Expect = 4e-36
Identities = 119/397 (29%), Positives = 201/397 (50%), Gaps = 8/397 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D D+V L ++ D+G+G+ + Q ++F F QAD+ST+R YGGTG+GL+I K L ELMGG
Sbjct: 1183 DEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGG 1242
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+I S GSTF F+ ++K ++ ++ ++ + L +GM ++VD +
Sbjct: 1243 EIGVDSQFGNGSTFYFTVSVK-----VAQNAQLNVEQEL----EGMAVLVVDDNSTARDI 1293
Query: 1175 TRYHLKRLGILLQVV-NNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLN 1002
R L+ +G + + M A+ K R+ L D+ PE D +
Sbjct: 1294 LRTTLQSMGFSVDSARSGMEALEK--------CAERDYRIALI---DWKMPEMDGTETAA 1342
Query: 1001 HLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQLLKV 834
+RE K L +L+V++ A+ + + ++ + KPI AS + I L
Sbjct: 1343 RMRELKQPPL------ILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGR 1396
Query: 833 EIAERKDNQNRPSFLRSL--LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
+ + + +P + L L GK IL+V+DN++N VA+ L++ G +S ++G+ A+
Sbjct: 1397 QGHKPVRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIAL 1456
Query: 659 SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPV 480
L FD MD QMP MDG++AT ++R++ A LPV
Sbjct: 1457 EKL-GQQSFDLVLMDCQMPVMDGYQATRELRKLPGLA-------------------ELPV 1496
Query: 479 LAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
+AMTA+ + E C+ +GM+ +++KP + LYQ +
Sbjct: 1497 VAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTL 1533
Score = 135 bits (339), Expect = 2e-29
Identities = 77/201 (38%), Positives = 113/201 (56%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K A+AA+ AKS FLA SHEIRTPMN + Q++Y + + ++L+
Sbjct: 1027 KEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERASKSLL 1086
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
+IND+LD +KIEAGKL++E VPF L ++++D+ +FS K+ +K +EL V VP +
Sbjct: 1087 GIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGVPTHL 1146
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
GDP R Q+L NL+ NA+KFTERG V + + +E + E L A+ G + TA
Sbjct: 1147 EGDPLRLSQVLINLMNNAIKFTERGEVMLSI--SELARDEDQVQLKFAVRDSG--IGLTA 1202
Query: 1667 NGAFNTLSGFEAADRRNSWQY 1605
F AD + +Y
Sbjct: 1203 EQQAKLFKSFSQADTSTTRKY 1223
Score = 51.6 bits (122), Expect = 2e-04
Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 15/256 (5%)
Frame = -2
Query: 1091 NGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKD--- 921
N A E+ ++ S+ R E VQL +R+ G ++ + S+AD
Sbjct: 1162 NNAIKFTERGEVMLSISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTR 1221
Query: 920 KYGSI-FDIVMCKPI-----------RASTIASSIQQLLKVEIAERKDNQNRPSFLRSLL 777
KYG + +CK + S+ + V++A QN + L
Sbjct: 1222 KYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTVSVKVA-----QNAQLNVEQEL 1276
Query: 776 VGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEM 597
G +LVVDDN + L+ G +V SG +A+ + +D +MPEM
Sbjct: 1277 EGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKC-AERDYRIALIDWKMPEM 1335
Query: 596 DGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMD 417
DG E ++R+++ +L ++A ++ + G++
Sbjct: 1336 DGTETAARMRELKQPP---------------------LILMVSAHANSEFIDKVEEMGIN 1374
Query: 416 GYVSKPFDEEQLYQAV 369
GY++KP +L +
Sbjct: 1375 GYITKPISASRLLDGI 1390
>gb|AAK54091.2| histidine kinase DhkJ [Dictyostelium discoideum]
Length = 2062
Score = 157 bits (396), Expect = 4e-36
Identities = 118/394 (29%), Positives = 181/394 (45%), Gaps = 7/394 (1%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V L S+ DTG+GIP +F F QAD S +R YGGTG+GL+IS L ELM G++S
Sbjct: 1498 VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSV 1557
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GSTF F+A S + LTE L + ++VD V +
Sbjct: 1558 VSKSGKGSTFEFTAQFPTSPNQL------PLTEKL----NDVHTLIVDDNKSTLKVLKQI 1607
Query: 1163 LKRLGILLQVVNN----MNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
L GI +V NN N +VK A + + +F+++ D+ + ++
Sbjct: 1608 LSEFGITSEVSNNTQDAFNMIVK-------ATKTTKPFEFIFVDAQLGTSLIDMMVEKNM 1660
Query: 995 REQKNGQLSDGHKVVLLVTSEADK---DKYGSIFDIVMCKPIRASTIASSIQQLLKVEIA 825
K K+++L++ + D + + KP+ S I L + I
Sbjct: 1661 NHCKT-------KIIMLISGGGQRGYPDSSSNFITGYLSKPVSPSEI---FDILTRQGIT 1710
Query: 824 ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQP 645
+ Q + + +IL+ +DN VN R+A L+K+G V E+G A++ Q
Sbjct: 1711 RQIPKQLCKKIQLTSEIFGDILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQ- 1769
Query: 644 PHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTA 465
+FD MDVQMP GFEAT QIR+ E + H P++AMTA
Sbjct: 1770 LRKFDLILMDVQMPHCGGFEATAQIRKREHEQG-----------------IHTPIIAMTA 1812
Query: 464 DVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ +C+++GMD Y+SKP + +QL + +
Sbjct: 1813 HALARDRVKCLEAGMDDYISKPINPDQLKAMIEK 1846
Score = 137 bits (345), Expect = 3e-30
Identities = 69/147 (46%), Positives = 92/147 (62%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA AKS F+A SHEIRTPMNG+ Q++Y Q +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
T+IND+LD +KIEAG+LEL+ F LR+ + D + S ++ +KCIEL + +VP +
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHV 1767
IGDP R RQI+ NLVGNA+KFT +G V
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEV 1483
>ref|XP_642053.1| histidine kinase [Dictyostelium discoideum]
gb|EAL68114.1| histidine kinase [Dictyostelium discoideum]
Length = 2062
Score = 157 bits (396), Expect = 4e-36
Identities = 118/394 (29%), Positives = 181/394 (45%), Gaps = 7/394 (1%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V L S+ DTG+GIP +F F QAD S +R YGGTG+GL+IS L ELM G++S
Sbjct: 1498 VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSV 1557
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GSTF F+A S + LTE L + ++VD V +
Sbjct: 1558 VSKSGKGSTFEFTAQFPTSPNQL------PLTEKL----NDVHTLIVDDNKSTLKVLKQI 1607
Query: 1163 LKRLGILLQVVNN----MNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
L GI +V NN N +VK A + + +F+++ D+ + ++
Sbjct: 1608 LSEFGITSEVSNNTQDAFNMIVK-------ATKTTKPFEFIFVDAQLGTSLIDMMVEKNM 1660
Query: 995 REQKNGQLSDGHKVVLLVTSEADK---DKYGSIFDIVMCKPIRASTIASSIQQLLKVEIA 825
K K+++L++ + D + + KP+ S I L + I
Sbjct: 1661 NHCKT-------KIIMLISGGGQRGYPDSSSNFITGYLSKPVSPSEI---FDILTRQGIT 1710
Query: 824 ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQP 645
+ Q + + +IL+ +DN VN R+A L+K+G V E+G A++ Q
Sbjct: 1711 RQIPKQLCKKIQLTSEIFGDILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQ- 1769
Query: 644 PHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTA 465
+FD MDVQMP GFEAT QIR+ E + H P++AMTA
Sbjct: 1770 LRKFDLILMDVQMPHCGGFEATAQIRKREHEQG-----------------IHTPIIAMTA 1812
Query: 464 DVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ +C+++GMD Y+SKP + +QL + +
Sbjct: 1813 HALARDRVKCLEAGMDDYISKPINPDQLKAMIEK 1846
Score = 137 bits (345), Expect = 3e-30
Identities = 69/147 (46%), Positives = 92/147 (62%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA AKS F+A SHEIRTPMNG+ Q++Y Q +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
T+IND+LD +KIEAG+LEL+ F LR+ + D + S ++ +KCIEL + +VP +
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHV 1767
IGDP R RQI+ NLVGNA+KFT +G V
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEV 1483
>gb|AAZ45693.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
ref|YP_284163.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
Length = 852
Score = 157 bits (396), Expect = 4e-36
Identities = 118/416 (28%), Positives = 190/416 (45%), Gaps = 22/416 (5%)
Frame = -2
Query: 1544 NQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
+QS V L SI DTG+G+P Q +F F QAD ST+R +GGTG+GL+IS L +L
Sbjct: 341 DQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLVQL 400
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVR 1185
M G+I S P GS F+F+ G + F G + ++++
Sbjct: 401 MDGKIWLESTPGQGSVFSFTGRF--------GVQEATSVRPFEARFGGRRVLVIEDNATV 452
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKA--------FPGQNGAAGSREKASILFIESDFWR 1029
L++LG+ + +V + A V A FP A + A F ++ W
Sbjct: 453 GQYLVELLEQLGVQVSLVADGAAAVAAMERSRAMDFPYDYVLADANMDAPAGFALAEAW- 511
Query: 1028 PETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIA 861
G+ K+++++T+E + + +I + KPI + +
Sbjct: 512 ----------------GRSGRVEKLIVMLTTENQRHDLSRLREIGVSAHLVKPIGGADLI 555
Query: 860 SSIQQLLKVEIAERKDNQNRPSFLRSLL----------VGKNILVVDDNKVNLRVAAAAL 711
++ +A+ NQ F S + G NIL+V+DN VN +A L
Sbjct: 556 DAL------ALADGPGNQELSEFALSEINFDGVAKEDSSGLNILLVEDNPVNQELATRLL 609
Query: 710 KKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKN 531
++ VS +G +A+ L H FD MD+QMP M G EAT IR E++ + +
Sbjct: 610 ERQSHRVSLANNGAEAVDLFDSGH-FDVILMDMQMPVMGGIEATEAIRSREMRRSWVVSH 668
Query: 530 KLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+L + ++AMTA+V+ + C+++GM+ YV+KP E+LY A+ R
Sbjct: 669 ELKPVY----------IIAMTANVMATDRDRCLEAGMNDYVAKPLRSEELYAALER 714
Score = 129 bits (325), Expect = 6e-28
Identities = 63/151 (41%), Positives = 95/151 (62%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AE+A+ A+ FLA SHEIRTPMNG+ Q+ Y +T + AL+
Sbjct: 188 KEVAESANKARGAFLANMSHEIRTPMNGIIGMTELALDTQLDAEQRHYLKTVKSSAEALL 247
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
T++ND+LD +KIEAGK+E E++ F ++ + + V + + + +K +EL V VP +
Sbjct: 248 TIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARI 307
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+GDP R RQ++ NL+GNA+KFTERG V ++V
Sbjct: 308 VGDPTRLRQVIINLIGNAIKFTERGEVALKV 338
>emb|CAC09578.1| histidine kinase receptor [Fagus sylvatica]
Length = 247
Score = 157 bits (396), Expect = 4e-36
Identities = 95/235 (40%), Positives = 139/235 (59%), Gaps = 7/235 (2%)
Frame = -2
Query: 1196 RPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD 1017
RP + ++RYH++RLGI ++VV+++N G + + + ++ +E + W +T
Sbjct: 3 RPSLAKMSRYHIQRLGISVEVVSDLNQ------GWSKISSGNKVVDMVLVEQEVWDRDTH 56
Query: 1016 VQ--LLNHLREQKNGQLSDGHKVVLLV----TSEADKDKYGSIFDIVMCKPIRASTIASS 855
+ + +L++ +G K+ LL +S + G KP+RAS +A+S
Sbjct: 57 ISASFIINLKKIDHGIPP---KLFLLANSISSSRTNAATSGGFSPYTTMKPLRASMLAAS 113
Query: 854 IQQLLKVEIAERKDNQNRPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVE 678
+Q+ + V N+ PS LRSL G+ IL++DDN VNL+VAA ALKKYGA+V C E
Sbjct: 114 LQRAMGVGSKGNLRNRELPSLSLRSLPRGRKILIIDDNNVNLKVAAGALKKYGADVVCAE 173
Query: 677 SGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIE 513
S AI L+PPHRFDACFMD+QMPEMDGFEAT +IR ME N + AS+E
Sbjct: 174 SRIKAIEFLKPPHRFDACFMDIQMPEMDGFEATRKIRDMEHCFNNRIRRGEASVE 228
>ref|ZP_00849349.1| PAS [Shewanella sp. ANA-3]
gb|EAP21013.1| PAS [Shewanella sp. ANA-3]
Length = 1767
Score = 156 bits (395), Expect = 5e-36
Identities = 122/408 (29%), Positives = 199/408 (48%), Gaps = 7/408 (1%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
N + +D V L S+ D+G+G+ Q ++F F QAD+ST+R YGGTG+GL+I K L
Sbjct: 1181 NLVEQQNDDVVLRFSVRDSGIGLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLV 1240
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
ELMGG I S GSTF F+ L+ S S + LT A +GM ++ D
Sbjct: 1241 ELMGGTIGVESQFGHGSTFYFTVKLQIS-------SGQKLTVA--QELEGMPILVADDNA 1291
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-V 1014
+ R L+ +G + V + V Q A D+ P D +
Sbjct: 1292 TARDIMRTTLESMGFRVDTVRSGEEAVTRCIQQEYAVAL----------IDWKMPNLDGI 1341
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQ 846
+ +++Q + +L+V++ A++D I ++ + KPI AS + I
Sbjct: 1342 ETAKQIKQQ-----AKKAPRILMVSAHANQDFLSQIEELGLAGYISKPISASRLLDGIIN 1396
Query: 845 LL--KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
L + R+ +++ L L GK IL+V+DN++NL VA L++ G +S +G
Sbjct: 1397 SLGRAGVLPVRRQSESIDPKLLLPLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNG 1456
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
+ A+ L+ FD MD QMP MDG++AT +R ++ +L
Sbjct: 1457 QIALDKLE-QQSFDLVLMDCQMPVMDGYQATQALR---------KRPELT---------- 1496
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
LPV+AMTA+ + E C+++GM+ +++KP + LYQ + + + G+
Sbjct: 1497 ELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGGS 1544
Score = 143 bits (360), Expect = 6e-32
Identities = 78/201 (38%), Positives = 116/201 (57%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K +A+AA AK FLA SHEIRTPMN + QK+Y + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASKSLL 1089
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
++IND+LD +KIEAGKL++E+VPF L ++++D+ +FS K+ K +EL V NVP+ +
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
GD R Q+L NL+ NA+KFTERG V + + L E N + VL ++ G + TA
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDV--VLRFSVRDSG--IGLTA 1205
Query: 1667 NGAFNTLSGFEAADRRNSWQY 1605
+ F AD + +Y
Sbjct: 1206 DQQAKLFKSFSQADTSTTRKY 1226
>gb|EAN29674.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00606017.1| PAS [Magnetococcus sp. MC-1]
Length = 1202
Score = 156 bits (395), Expect = 5e-36
Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 8/401 (1%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ D+D VT+ + DTG+GI + R+F F QAD ST+R +GGTG+GL+ISK L ELM
Sbjct: 686 RQDADTVTVLTEVRDTGIGIDEAVRPRLFRMFTQADGSTTRRFGGTGLGLAISKQLVELM 745
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG++ F+S GSTF F T K ++++ + + +G++A++VD
Sbjct: 746 GGEVGFSSVMGQGSTFWFRITFPIVAK------AQAVAGGV-DSLQGLRALVVDDNATNR 798
Query: 1181 AVTRYHLKRLGIL-LQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQL 1008
+ +L G+ L+ + A+ K A ++ S D P D + L
Sbjct: 799 NLLGRYLSNWGVTHLECASGKQALEKI------ADAAKFGLSFDLAILDLLMPGMDGLAL 852
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-VMCKPIRASTIASSIQQLLKVE 831
+ + + ++VLL ++ A +++ + + KPIR + + + + Q+++ E
Sbjct: 853 AERITQMVQDKQIKPLRMVLLTSAHARREELEQAGVVAALSKPIRQAQLRALLGQVMRGE 912
Query: 830 -----IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+ ER N S +L+V+D+ +N +VA L G V G +
Sbjct: 913 RVVGGLVERISQNN-----MSATFDAAVLLVEDHPINQQVARGMLAGLGCRVEIANDGHE 967
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
+ L HR+D MD+QMP MDG+E T IRQME R
Sbjct: 968 GVRLF-ARHRYDLVLMDIQMPGMDGYETTDAIRQMERSERWPR----------------T 1010
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
P++A+TA+ ++ + C+ + MD Y+SKP ++L A+S+
Sbjct: 1011 PIVALTANAMEQDRDRCLAADMDDYLSKPISLDRLKAAMSK 1051
Score = 134 bits (337), Expect = 3e-29
Identities = 75/165 (45%), Positives = 104/165 (63%), Gaps = 3/165 (1%)
Frame = -2
Query: 2240 VTEDCRKMEELKT---QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
+++ R +ELK AE+A+ +KS+FLA SHEIRTPMNGV Q+
Sbjct: 518 ISDRKRVEDELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTELTPEQQ 577
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
+ +TA+ +L+T+IND+LD +KIEAGKLELE + FDL L++DV +L + + + +
Sbjct: 578 SHMRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVDSEKL 637
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
EL ++P V GDP R RQ+L NLVGNAVKFT G V VR+
Sbjct: 638 ELLHNAPADLPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRM 682
>gb|ABB38740.1| histidine kinase [Desulfovibrio desulfuricans G20]
ref|YP_388435.1| histidine kinase [Desulfovibrio desulfuricans G20]
Length = 647
Score = 155 bits (393), Expect = 8e-36
Identities = 114/407 (28%), Positives = 198/407 (48%), Gaps = 12/407 (2%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ ++ + +++D+G+GI ++F PF QAD S +R YGGTG+GLSIS L +LM
Sbjct: 44 KGSGEKSRIRFAVKDSGIGISSSDLAKLFNPFSQADGSITRKYGGTGLGLSISNKLVQLM 103
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP-TAFKGMKAILVDGRPVR 1185
GG++ S P GS F+F + D S E L T +G + ++ D
Sbjct: 104 GGEMHVESEPGRGSIFSFELEFERHRTD-------SAAEHLSFTGLEGTRVLVADDNFTS 156
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQ 1011
A+ + L+ L + + + V + E ++ ++ WR P D +
Sbjct: 157 RAILKEVLESLRFDVTLAESGEEAVDL------VQKTAEPFKVVLLD---WRMPGLDGLA 207
Query: 1010 LLNHLREQKNGQLSDGHKVVLLVTSEADKDKYG----SIFDIVMCKPIRASTIASSIQQL 843
H+R+ +L++T+ ++ G I D V+ KP+ S + ++I
Sbjct: 208 CARHIRQLD----LPVRPTILIITAYGREEVLGEIPSEIIDGVLLKPVARSLLLNTILDA 263
Query: 842 LKVEIAERKDNQNR-----PSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVE 678
L E + R + ++R + LR L ++LVV+DNK+N ++A L+ G V+
Sbjct: 264 LP-EYSSRPEQESRIIQIDTAQLRQELADTSVLVVEDNKINRQIAKELLEGVGVRVTLAG 322
Query: 677 SGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTA 498
G +A++L++ + FD FMD+QMP MDG EA +IRQ++ K
Sbjct: 323 DGLEALALVE-NYDFDLIFMDIQMPRMDGLEACRRIRQLQHKKQP--------------- 366
Query: 497 EYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
PV+AMTA + E +++GM+ +++KP D ++LY A++ +
Sbjct: 367 ----PVVAMTAHALAGDRETSLRAGMNDHITKPIDPDELYAALANWI 409
Score = 48.5 bits (114), Expect = 0.002
Identities = 29/74 (39%), Positives = 39/74 (52%)
Frame = -2
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
+VP ++GDP R Q+LTNLV NA+KFT G V V V L + S E +++ + G
Sbjct: 4 DVPLDLVGDPLRLGQVLTNLVSNAIKFTSSGEVIVSVKLVKGSG-EKSRIRFAVKDSGIG 62
Query: 1685 RVESTANGAFNTLS 1644
S FN S
Sbjct: 63 ISSSDLAKLFNPFS 76
>ref|ZP_00108815.1| COG0642: Signal transduction histidine kinase [Nostoc punctiforme PCC
73102]
Length = 1559
Score = 155 bits (393), Expect = 8e-36
Identities = 121/411 (29%), Positives = 184/411 (44%), Gaps = 21/411 (5%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
S T+ +I DTG+GI + Q R+FTPF Q D+S +R YGGTG+GL+I K L LMGG+
Sbjct: 1043 STTATIYFAITDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGLGLAICKQLVSLMGGE 1102
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
I S GS F F T IS +S R L + ++VD +
Sbjct: 1103 IGVESRLGKGSKFWFEVTFAQQLYPISSESEREL-------LINRRLLVVDDNATNRKII 1155
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLR 993
+ R G+L+ + +KA A + I I D PE D L
Sbjct: 1156 HHQATRWGMLVDQAASATIALKAI---EETAKQKNLYDIAVI--DMHMPEVDGMTLG--- 1207
Query: 992 EQKNGQLSDGHKVVLLVTSEADKDKYGSI----FDIVMCKPIRASTIASSIQQLLKVEIA 825
EQ + ++++TS +D+ F + KP++ S + +I +L +I
Sbjct: 1208 EQIKANSAIAGLPLIMLTSTNQRDEIQRALKIGFAAYLVKPVKPSRLLDTIMTILGTQIK 1267
Query: 824 ER-------------KDNQNRPSFLRSLLVGK----NILVVDDNKVNLRVAAAALKKYGA 696
E ++N N S LL IL+ +DN VN +VA L+ G
Sbjct: 1268 EETEVRSQEFKLKDYENNSNDHSSSSRLLARDFHKLRILLAEDNLVNQKVALKQLQSLGY 1327
Query: 695 NVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASI 516
+ +GK+ + LL+ +D MD QMP +DG E T +I + +
Sbjct: 1328 SADVAGNGKEVLQLLE-KIPYDLILMDCQMPVLDGLETTKEIHRWQ-------------- 1372
Query: 515 EGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
E S + V+AMTA+ ++ + C+ +GMD Y+SKP +E+L A+ R
Sbjct: 1373 ESSFVSSRRPVVIAMTANAMKEDQQMCLDAGMDDYLSKPVIKEKLAAALQR 1423
Score = 137 bits (345), Expect = 3e-30
Identities = 75/186 (40%), Positives = 111/186 (59%)
Frame = -2
Query: 2282 LGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXX 2103
+G ++A A Y + T+ R++E + QAE A KS FLA SHEIRTPMN V
Sbjct: 862 VGIALAQAQMLYAE-TQQRRELEVARHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGL 920
Query: 2102 XXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVS 1923
Q+D+ +T ++ G AL++LIN++LD +K+EAG++ LE + FDL + +++V+
Sbjct: 921 MLETPLNSEQQDFIETIRISGDALLSLINEILDLSKLEAGEMALETLDFDLSTCLEEVLE 980
Query: 1922 LFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
L + + K +E+A + NVP + GD R RQIL NL+ NA+KFT G V VR L
Sbjct: 981 LLAPSAHNKGLEIAALIYPNVPTQLQGDAGRLRQILMNLISNAIKFTSNGEVVVRAELRS 1040
Query: 1742 NSNMEA 1725
S+ A
Sbjct: 1041 LSSTTA 1046
>gb|ABC23161.1| Multi-sensor Hybrid Histidine Kinase [Rhodospirillum rubrum ATCC
11170]
ref|YP_427448.1| Multi-sensor Hybrid Histidine Kinase [Rhodospirillum rubrum ATCC
11170]
Length = 1560
Score = 155 bits (393), Expect = 8e-36
Identities = 119/389 (30%), Positives = 190/389 (48%), Gaps = 8/389 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+ DR+T+ +++ DTG+GI +F F QA++ST+R +GG+G+GL+I++ L E MGG
Sbjct: 1042 EDDRLTMRMAVSDTGIGIAADQLASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMGG 1101
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+ S P GS F F TL +SG+ S S P ++ ++V+ PV +
Sbjct: 1102 VLRVESQPGRGSRFWFDITL-----PVSGEGSESAESGRP-----LRVLVVEDNPVAGGI 1151
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNH 999
++ LG +V +A KA AAG A +L D+ PE D +
Sbjct: 1152 LAQTVQGLGYDCDLVQE-SAETKARIVAADAAGRPYDAVLL----DWRMPEVDGLTTARI 1206
Query: 998 LREQKNGQLSDGHKVVLLVTSEAD-----KDKYGSIFDIVMCKPIRASTIASSIQQLLKV 834
LRE G ++++ D + + FD V+ KP+ + ++ + +
Sbjct: 1207 LREM--GVTLCPQSIIMVTAYGRDVLSLAEQTGDAPFDAVLTKPVTPGQLRDALLRRDRA 1264
Query: 833 EIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISL 654
+E + P L + L G+ +LVV+DN +N +VAA L GA + E G+ + +
Sbjct: 1265 -TSEGEATALAPRGLPTPLAGRRLLVVEDNAINRQVAAELLAGAGAEIDLAEGGERGVMM 1323
Query: 653 -LQPPHRFDACFMDVQMPEMDGFEATGQIR-QMELKANEERKNKLASIEGSTTAEYHLPV 480
L+ +DA MD+QMP++DGFEAT +IR KA LP+
Sbjct: 1324 VLRGEIAYDAVLMDIQMPDIDGFEATRRIRADARFKA--------------------LPI 1363
Query: 479 LAMTADVIQATYEECIKSGMDGYVSKPFD 393
+AMTA+ +A E C+ +GM +V KP D
Sbjct: 1364 VAMTANASRADREACLAAGMTEHVGKPID 1392
Score = 121 bits (303), Expect = 2e-25
Identities = 65/151 (43%), Positives = 86/151 (56%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AE A V K QFLA SHEIRTPMN + Q DY A +L+
Sbjct: 886 KQAAEEASVVKGQFLANMSHEIRTPMNAILGMLTLVQRTALTPHQADYVCKAHSAAGSLL 945
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
L+ND+LD +KIEAGKL LE PF L +++ D+ + S +K +E+ + ++P
Sbjct: 946 GLLNDILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSF 1005
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
IGD R RQ+L NL GNA+KFT++G V V V
Sbjct: 1006 IGDDLRLRQVLLNLAGNALKFTDQGQVIVSV 1036
Score = 38.5 bits (88), Expect = 1.9
Identities = 60/275 (21%), Positives = 104/275 (37%), Gaps = 18/275 (6%)
Frame = -2
Query: 3218 WWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARMLQEQFGVTVNHVH 3039
WW G VL + S W + + + + AE + + E+ + +
Sbjct: 14 WW----IVGAVLAGIGLSGFAVWWVTQRNAELAETAASLELTRLSDAIAERITLYQYGLR 69
Query: 3038 AIAILISTFNFEKSPPAIDQDTFAKY--TARTSFERPLLNGVAFAQRVFHHEREMFESQ- 2868
+I TF I ++ F Y T E P G F +RV E F ++
Sbjct: 70 GARGVIVTFGER----GITREVFRGYSKTRDIGAEFPGARGFGFIRRVPADREERFLAEA 125
Query: 2867 --QGWVMNTMQREPAPPQVEYAPVIFSQDTVSYL---------ARIDMMSGEEDRENIFR 2721
GW P ++ P + + Y+ +D+ S + RE
Sbjct: 126 RADGW--------PDFAIAQFTPHEGERFVIQYIEPAQRNLKAVGLDIASEKNRREAALA 177
Query: 2720 ARTTGKAVLTNPFRLL---GSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDV 2550
A TG+ LT P L+ G ++ +YR + E+R +A G ++
Sbjct: 178 AIDTGQVRLTGPITLVQASGDKSQSFLILLPIYRTLSTPETLAERRAQA----FGWSYAP 233
Query: 2549 ESLVENLLSKLAGNQD-IVVNVYDVTNASDAMVLY 2448
++ E +LS L NQD + + + DVTN ++A ++
Sbjct: 234 LNMPE-VLSGLVPNQDRLALTLRDVTNPAEAETVF 267
>gb|EAN28230.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Magnetococcus sp. MC-1]
ref|ZP_00607367.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Magnetococcus sp. MC-1]
Length = 920
Score = 155 bits (393), Expect = 8e-36
Identities = 117/395 (29%), Positives = 193/395 (48%), Gaps = 5/395 (1%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V + + D+G+G+ Q DR+F F QADSST+R YGG+G+GLSI K L +M G I
Sbjct: 310 VVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLVGMMDGDIWV 369
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S P GS FTF+A L +S R G++ ++VD PV +
Sbjct: 370 ESQPGRGSQFTFTAQL------VSQRQDRRRFRLPSMHLVGLRVLVVDDNPVVRQILVES 423
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
L ++ + + V++A G A +R + L + + + + V L + +
Sbjct: 424 LAIFSFCVEALATVEEVIEAL----GQAIARGEPYGLVVLAGRFGGKGGVALAGEI-NRC 478
Query: 983 NGQLSDGHKVVLLVTSEAD---KDKYGSIFDIVMCKPIRASTIASSIQQLL--KVEIAER 819
QL+ K+VL+ SE D + ++ + KPI + + + ++L V+ +
Sbjct: 479 YPQLT-LPKMVLVGASERDDVVAMAGAQLVELFVTKPITQTILFEGVLEVLGYVVQAQQH 537
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
++R R +L G IL+V+DN++N +VA L+ G V SG+ A+ +
Sbjct: 538 AGGRDRTREKR-VLSGCQILLVEDNEINQQVACELLQGEGVTVVVANSGQQAVDRVLSGE 596
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
RFDA MD+QMP MDG+EAT IR+ ++ LP++AMTA+
Sbjct: 597 RFDAVLMDIQMPGMDGYEATQVIRKQPQFSD-------------------LPIIAMTANA 637
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVV 354
+ E C+ +GM+ ++ KP + L++ + R V+
Sbjct: 638 MAGDRERCLAAGMNDHIGKPIQPKLLFETLGRYVI 672
Score = 130 bits (327), Expect = 4e-28
Identities = 72/178 (40%), Positives = 102/178 (57%)
Frame = -2
Query: 2288 MLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXX 2109
++L + I SR + R++ K +A+ A+ AKS FLA SHEIRTPMN +
Sbjct: 123 VILIHDITNTVSREQMLRNQARELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIGMS 182
Query: 2108 XXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV 1929
Q+DY L+ +IND+LD +KIEAGKL +E+V F L ++ +V
Sbjct: 183 HLALKTDLNAKQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLSNV 242
Query: 1928 VSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+L S K EK +E++ V VP ++GDP R QIL NLV NAVKFTE+G++ V +
Sbjct: 243 ANLVSMKVEEKGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAI 300
>ref|ZP_00836597.1| PAS [Shewanella sp. PV-4]
gb|EAP03455.1| PAS [Shewanella sp. PV-4]
Length = 1768
Score = 155 bits (392), Expect = 1e-35
Identities = 120/398 (30%), Positives = 196/398 (49%), Gaps = 9/398 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+ + + L S+ D G+G+ + + ++F F QADSST+R YGGTG+GL+I K L ELMGG
Sbjct: 1186 EDEEILLKFSVRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGG 1245
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+I S GSTF FS K ++ + + + L +GM+ ++ D +
Sbjct: 1246 EIGVESQFGNGSTFFFSVRFK-----VADNQLIKVAQEL----EGMRILVADDNATARDI 1296
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQLLN 1002
R L+ +G + V + A SR + + + WR PE D ++
Sbjct: 1297 LRSTLESMGFTVDTVRS-----------GAEALSRCQETDYGVALIDWRMPEMDGLETAR 1345
Query: 1001 HLREQKNGQLSDGHKVVLLVTSEADKDKYGSI----FDIVMCKPIRASTIASSIQQLLKV 834
L ++ L+V++ AD D + KPI AS + I L
Sbjct: 1346 RLLSERTNP-----PKTLIVSAHADGDFIDKAEQAEISGYITKPISASRLLDGIMSALGK 1400
Query: 833 EIA---ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
+ A RK ++ P+ L + L GK IL+V+DN++N VA+ L++ G +S E+G+ A
Sbjct: 1401 QGAMPVRRKGSEVSPALL-AQLKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVA 1459
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
+ L FD MD QMP MDG++AT ++R ++ +LA LP
Sbjct: 1460 LEKL-AMQSFDLVLMDCQMPVMDGYQATAELR---------KRPELAD----------LP 1499
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
V+AMTA+ + E C+++GM+ +++KP + LY+ +
Sbjct: 1500 VIAMTANAMAGDKEMCLRAGMNDHIAKPIEVSLLYKTL 1537
Score = 138 bits (347), Expect = 2e-30
Identities = 66/156 (42%), Positives = 101/156 (64%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ + K A+AA AKS FLA SHEIRTPMN + Q++Y +
Sbjct: 1025 ELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDRA 1084
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
++L+ +IND+LD +KIEAGKL++EAVPF L ++++D+ +FS K+ +K +EL V N
Sbjct: 1085 SKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAPN 1144
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+P+ ++GDP R Q+L NL+ NA+KFTE+G V + +
Sbjct: 1145 IPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSI 1180
>ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid
family) [Vibrio splendidus 12B01]
gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid
family) [Vibrio splendidus 12B01]
Length = 1640
Score = 155 bits (391), Expect = 1e-35
Identities = 110/367 (29%), Positives = 175/367 (47%), Gaps = 1/367 (0%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++EE K +A+ A AKS+FLA SHEIRTPMN + ++Y +
Sbjct: 1041 QLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYLAIGEISNPVARNYIEKVHRS 1100
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G +L+++IND+LD +KIEAG+L ++++PFD + DV+ L SK+ EK ++L++ +
Sbjct: 1101 GHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMESKADEKQLKLSMSIDPE 1160
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
+ +IGDP R Q++ NL+GNA+KFT G+V + V +++E+N R
Sbjct: 1161 LDTPLIGDPLRLFQVILNLIGNAIKFTSHGNVTLNV-----THLESND-----------R 1204
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISI 1503
S +T G +RR +Q F +Q+DS
Sbjct: 1205 SVSMKVVVSDTGIGISEENRRKLFQAF-------------------SQADS--------- 1236
Query: 1502 EDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVG 1323
+T+R +GGTG+GL+IS+ L + MG +IS S G
Sbjct: 1237 ------------------------TTTRKFGGTGLGLNISQKLVQAMGSKISVASVLGKG 1272
Query: 1322 STFTFSATLKHS-YKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
S F+F TL S ++++ S+ L FKG K +LV+ + + LKR +
Sbjct: 1273 SEFSFVLTLPRSDSEELAHFKSQELKLDYHIEFKGQKVLLVEDNELNQDLALAFLKRSKL 1332
Query: 1145 LLQVVNN 1125
+ N
Sbjct: 1333 NADLAEN 1339
Score = 71.2 bits (173), Expect = 3e-10
Identities = 41/140 (29%), Positives = 75/140 (53%)
Frame = -2
Query: 773 GKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMD 594
G+ +L+V+DN++N +A A LK+ N E+GK+A+SL + + ++ MD+QMP MD
Sbjct: 1307 GQKVLLVEDNELNQDLALAFLKRSKLNADLAENGKEAVSLAK-NNDYEMILMDLQMPVMD 1365
Query: 593 GFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDG 414
GFEAT QIR+ + + +P++AM+A+V + +G+
Sbjct: 1366 GFEATRQIREFDTQ---------------------VPIIAMSANVFADAKQRARDAGVTD 1404
Query: 413 YVSKPFDEEQLYQAVSRLVV 354
++ KP ++ + + +V
Sbjct: 1405 FLDKPIIIDKATSLIIKYIV 1424
>ref|ZP_00908274.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Clostridium beijerincki NCIMB 8052]
gb|EAP60967.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Clostridium beijerincki NCIMB 8052]
Length = 1083
Score = 155 bits (391), Expect = 1e-35
Identities = 76/173 (43%), Positives = 113/173 (65%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+KV E ++ K AE A++AKSQFLA SHEIRTP+NG+ TQ+D
Sbjct: 424 EKVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQD 483
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
Y +T Q L+ +IND+LD +KIEAG++E+E V FD+RS+++ + L+ +K+REK +E
Sbjct: 484 YIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLE 543
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNME 1728
L + + +P ++GDP + RQI++NLV NAVKFT G VF+ V + + +N E
Sbjct: 544 LNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTE 596
Score = 135 bits (340), Expect = 1e-29
Identities = 106/402 (26%), Positives = 191/402 (47%), Gaps = 13/402 (3%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V L I DTG+G+ + ++F PF QADSS++R YGGTG+GL+I K + E+MGG IS
Sbjct: 597 VQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVEMMGGTISV 656
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP--TAFKGMKAILVDGRPVRSAVTR 1170
S + G+TF F L S +S+ + P + FKG + +++D + + +
Sbjct: 657 KSVKNRGTTFCFDLLL--------DKSEQSVIQMPPDYSIFKGKRILVIDDYEMNRYIAK 708
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLRE 990
+L+ +G ++ ++ + + +R+ + + I+ + T +L+ ++E
Sbjct: 709 VYLEEVGCMIDEAESLESALSML------INNRKAYNTILIDYQM-KEITGFELVEIMKE 761
Query: 989 QKNGQLSDGHKVVL---LVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLK------ 837
+ G ++D ++L SEA K F + KP + + + ++K
Sbjct: 762 R--GLINDIPLILLTSVTANSEARIAKENK-FSGYISKPYKRGDLLDCVAMVIKGDGSKI 818
Query: 836 --VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
++ K N + + + IL+V+DN +N++ +LK G G A
Sbjct: 819 YNNDVFITKQNVEEAKYNKKI----KILLVEDNDINIKFFVNSLKLNGLTCDIAIDGAKA 874
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
+ + +D FMD QMP MDG+EAT +I + N +P
Sbjct: 875 LKACE-NKEYDIIFMDCQMPVMDGYEATRKILLLRSYKN-------------------VP 914
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
V+AMTA ++ +C+++GM Y+SKPF +Q+ + + + V
Sbjct: 915 VIAMTAYSMKDDEIKCLEAGMIDYLSKPFTVDQVMEMLEKHV 956
Score = 55.5 bits (132), Expect = 2e-05
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 17/252 (6%)
Frame = -2
Query: 1055 LFIE-SDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKD---KYGSI-FDIVM 891
+FIE S T+VQL +R+ G + + S+AD KYG + +
Sbjct: 583 VFIEVSVIKETNTEVQLYFEIRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAI 642
Query: 890 CKPI---RASTIA-SSIQQL-------LKVEIAERKDNQNRPSFLRSLLVGKNILVVDDN 744
CK I TI+ S++ L ++ +E+ Q P + S+ GK ILV+DD
Sbjct: 643 CKKIVEMMGGTISVKSVKNRGTTFCFDLLLDKSEQSVIQMPPDY--SIFKGKRILVIDDY 700
Query: 743 KVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR-FDACFMDVQMPEMDGFEATGQIR 567
++N +A L++ G + ES + A+S+L + ++ +D QM E+ GFE ++
Sbjct: 701 EMNRYIAKVYLEEVGCMIDEAESLESALSMLINNRKAYNTILIDYQMKEITGFELVEIMK 760
Query: 566 QMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEE 387
+ L + +P++ +T+ + ++ GY+SKP+
Sbjct: 761 ERGLIND-------------------IPLILLTSVTANSEARIAKENKFSGYISKPYKRG 801
Query: 386 QLYQAVSRLVVG 351
L V+ ++ G
Sbjct: 802 DLLDCVAMVIKG 813
>ref|ZP_01154229.1| PAS [Methanosaeta thermophila PT]
gb|EAR48003.1| PAS [Methanosaeta thermophila PT]
Length = 1692
Score = 154 bits (389), Expect = 2e-35
Identities = 129/406 (31%), Positives = 199/406 (49%), Gaps = 5/406 (1%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D D L + DTG+GIP + DR+F F Q DSS +R YGGTG+GL+ISK L E+MGG
Sbjct: 1246 DEDLSELHFFVRDTGIGIPPEKMDRLFHTFSQVDSSITRRYGGTGLGLAISKHLVEMMGG 1305
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+I S P GSTF F T+K + S + S L KG +A+L+ R+
Sbjct: 1306 RIWAESIPGAGSTFHF--TIKARVSERSQERSDLL--------KGRRALLI----YRNDT 1351
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
R LK +L + +N++ V F ++ G+ + F+ ++F +++ + L
Sbjct: 1352 ARSALK----MLLLSHNIDVVDAPFHDESLLTGNFD-----FVIAEFADDSDIMKIKSAL 1402
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-VMCKPIRASTIASSIQQLLKVEIAER 819
+ + +LL+T D + G D ++ KP++ S + S++ L E E
Sbjct: 1403 PDTR----------ILLIT---DLQRQGISHDTSLIPKPVKHSQMISAMISALIGESIEV 1449
Query: 818 KDNQNRPSFLRSLLVGKN---ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
+ +Q VG++ ILV +DN VNL+V L G +G + +S L+
Sbjct: 1450 EPSQE---------VGRSDLRILVAEDNPVNLKVVLMMLSHLGYRADSARNGLEVLSALE 1500
Query: 647 PPHR-FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
HR +D FMDVQMP+MDG EA +IR M+ EG ++A+
Sbjct: 1501 --HRDYDLVFMDVQMPDMDGLEAARRIRDMK------------GYEGPR-------IVAI 1539
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV 333
TA ++ + CI +GMD Y+SKP E+L A+ + SA+
Sbjct: 1540 TAYALEGDRDRCIAAGMDDYISKPVTMEKLKAAIENVESALDPSAI 1585
Score = 137 bits (345), Expect = 3e-30
Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = -2
Query: 2249 YDKVTEDCRKMEELKTQAEAADVA---KSQFLATASHEIRTPMNGVXXXXXXXXXXXXXX 2079
++ VT+D + EEL+ EAA+ A K++FLA SHEIRTP+N +
Sbjct: 1073 FEDVTKDIKAAEELRKAKEAAEEAARSKAEFLANMSHEIRTPLNAIIGMSGLLLRTNVTP 1132
Query: 2078 TQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSRE 1899
Q+ Y Q G AL+ ++ D+LD ++IE GKLEL++ F + ++ + + S K+ E
Sbjct: 1133 EQRSYVSAIQSSGNALLEMLADILDLSRIEEGKLELDSSTFSILECVETCIDILSVKASE 1192
Query: 1898 KCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
K IELA + ++VP++V+GD R RQ+L NL+ NA+KFTERG VF+RV
Sbjct: 1193 KQIELAYLIDEDVPELVLGDATRLRQVLVNLLENAIKFTERGEVFLRV 1240
>gb|EAO24717.1| PAS [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
ref|ZP_00662714.1| PAS [Syntrophomonas wolfei str. Goettingen]
Length = 1442
Score = 153 bits (387), Expect = 4e-35
Identities = 121/423 (28%), Positives = 200/423 (47%), Gaps = 18/423 (4%)
Frame = -2
Query: 1553 ENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCL 1374
E N+S SD+ +A + D+G+GI + +++F PF QAD+ST+R YGGTG+GL+IS L
Sbjct: 960 ETINES-SDKAEIAFEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYEL 1018
Query: 1373 AELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGR 1194
LM G + S GS F F+A K + + P KG + ++VD
Sbjct: 1019 VRLMEGTMQVKSKLGQGSKFYFTACFKPGLR-------KDTLPFEPAELKGARVLIVDDN 1071
Query: 1193 PVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDV 1014
+ R +L+ L++ + S EKA + + + + DV
Sbjct: 1072 SSNRKIIRTYLEDAQCLVE-----------------ESDSAEKAITILLSASAVK-SFDV 1113
Query: 1013 QLLNHLREQKNG-QLSDGHKVV--------LLVTSEADK------DKYGSIFDIVMCKPI 879
+++ NG +L+ K + +++TS A K ++G F + KP+
Sbjct: 1114 VIVDFQMPAMNGHELAAALKAIPSTRAIHLIMLTSAAQKGDARRAKEHG--FSGYLTKPV 1171
Query: 878 RASTIASSIQQL--LKVEIAERKDNQNRPSFLRSLLVGK-NILVVDDNKVNLRVAAAALK 708
+ + I + LK E + R + + + + L+V+DN++N ++ L+
Sbjct: 1172 KRDELLQCISIVLGLKTEASLGDSIVTRYTIKENPIPARPRFLLVEDNEMNQKIIVKMLE 1231
Query: 707 KYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNK 528
K G SG +A+ LQ +D FMD QMPEMDG+E T +IRQME EER
Sbjct: 1232 KRGMYCDLACSGAEALKALQQKD-YDIVFMDCQMPEMDGYETTARIRQME---GEER--- 1284
Query: 527 LASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGT 348
H ++AMTA+ ++ E+C+++GMD Y+SKP D + L+ + +
Sbjct: 1285 ------------HTIIVAMTANAMEGDREKCLQAGMDDYISKPVDFQLLFNIIEQYTARQ 1332
Query: 347 TDS 339
+S
Sbjct: 1333 QES 1335
Score = 149 bits (375), Expect = 1e-33
Identities = 87/204 (42%), Positives = 118/204 (57%)
Frame = -2
Query: 2300 FVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGV 2121
F I SIA A R ++ +K+ + K AE+A+ AKS FLA SHEIRTPMNG+
Sbjct: 782 FSILKAFSNSIAEAIER----SQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGI 837
Query: 2120 XXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSL 1941
Q+DY Q A L+ LIND+LD +KIEAGKL +E +PF +R++
Sbjct: 838 LGFLELLGETELSTEQQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTV 897
Query: 1940 MDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFV 1761
++D VSL + K+REK +E+ + NVP V+GDP R RQIL NL+ NAVKFT G + V
Sbjct: 898 VEDAVSLQAPKAREKGLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILV 957
Query: 1760 RVCLAENSNMEANQVLHGAMNGKG 1689
V S+ +A + +G G
Sbjct: 958 IVETINESSDKAEIAFEVSDSGIG 981
Score = 48.9 bits (115), Expect = 0.001
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL---QPPHRFDACFMDVQ 609
L G +L+VDDN N ++ L+ V +S + AI++L FD +D Q
Sbjct: 1060 LKGARVLIVDDNSSNRKIIRTYLEDAQCLVEESDSAEKAITILLSASAVKSFDVVIVDFQ 1119
Query: 608 MPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIK 429
MP M+G E ++ + +T HL +L A A + +
Sbjct: 1120 MPAMNGHELAAALKAIP-----------------STRAIHLIMLTSAAQKGDARRAK--E 1160
Query: 428 SGMDGYVSKPFDEEQLYQAVSRLVVGTTDSA 336
G GY++KP ++L Q +S +V+G A
Sbjct: 1161 HGFSGYLTKPVKRDELLQCIS-IVLGLKTEA 1190
>gb|AAK88075.1| AGR_C_4237p [Agrobacterium tumefaciens str. C58]
ref|NP_355290.1| hypothetical protein AGR_C_4237 [Agrobacterium tumefaciens str. C58]
Length = 1243
Score = 153 bits (387), Expect = 4e-35
Identities = 89/188 (47%), Positives = 118/188 (62%)
Frame = -2
Query: 2318 TNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIR 2139
TN G + W+++ + KV E+ +++ L ++AEAAD AKS+FLA SHEIR
Sbjct: 656 TNSSGNY--WLIIVTDVTEM-----KVREE--ELQRLLSRAEAADRAKSEFLANMSHEIR 706
Query: 2138 TPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVP 1959
TPMNGV QK + G AL+T+IND+LD +KIEAG+++L +VP
Sbjct: 707 TPMNGVLGMAELLAKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVP 766
Query: 1958 FDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE 1779
FD ++DVVSL SS + EK IEL V + +V VIGD RFRQI+TN+VGNAVKFTE
Sbjct: 767 FDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTE 826
Query: 1778 RGHVFVRV 1755
GHV V +
Sbjct: 827 TGHVLVEL 834
Score = 117 bits (292), Expect = 4e-24
Identities = 108/432 (25%), Positives = 187/432 (43%), Gaps = 36/432 (8%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
++ +++ ++ +ED+G+GIP+ + +F F Q D S +R + GTG+GL+I+ L
Sbjct: 835 SAQSAEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLV 894
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
L G+I+ S GS F + + R L A ++ +++D
Sbjct: 895 GLFDGKINVVSEVGRGSAFEVDIPFQVMER-------RRDVPLLSVAIDDIRVLVIDDND 947
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILF----IESDFWRPE 1023
V + L+ GI V N G +G A +E AS+ F I D+ P
Sbjct: 948 VNRRILTEQLRSWGIDGHAVEN---------GPSGIAVLQEAASLGFAIDAIILDYHMPV 998
Query: 1022 TD-VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIV-----MCKPIRASTIA 861
+ + ++ +R K D +V L + + D+ ++F + + KP RA +
Sbjct: 999 MNGLDVVERIRADKR---FDDIAIVFLTSMDVVGDE--TLFTDLSVQAHLMKPARARLLR 1053
Query: 860 SSIQQLLK------------------------VEIAERKDNQNRPSFL--RSLLVGKNIL 759
S++ +++ AE+K P+ + RS ++L
Sbjct: 1054 STLFDVVRDVRLKRIRQHPLAQGTGGEKARPESRPAEKKQRAEAPATVPERSRPCLLDVL 1113
Query: 758 VVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEAT 579
V +DN VN V + L++ G V +GK A+ + + MDV MP M+G +AT
Sbjct: 1114 VAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQAWEE-YNPALILMDVSMPVMNGHQAT 1172
Query: 578 GQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKP 399
IR E A + R H+PV+ +TA +A E C+++GMD Y+SKP
Sbjct: 1173 QAIRAAEQAAGDSR---------------HVPVIGVTAHTQEADRERCLEAGMDDYLSKP 1217
Query: 398 FDEEQLYQAVSR 363
E L +++
Sbjct: 1218 ISPESLEDKIAQ 1229
>gb|EAN29352.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00606196.1| PAS [Magnetococcus sp. MC-1]
Length = 927
Score = 153 bits (387), Expect = 4e-35
Identities = 119/391 (30%), Positives = 185/391 (47%), Gaps = 5/391 (1%)
Frame = -2
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
+V + + DTG+GIP Q VF F Q DSST R YGGTG+GL+ISK LA+LMGGQ+
Sbjct: 559 QVEIVFRVIDTGIGIPESKQSVVFDAFKQLDSSTQRRYGGTGLGLTISKKLADLMGGQLG 618
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRY 1167
S GSTFT S L S +G S S A F GM ++ P++
Sbjct: 619 LKSQEGHGSTFTLSLRLSRS----TGPSKSSAQPA--PIFAGMHILIWHTHPIKRMNIEE 672
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQ 987
L R G L + ++ ++ + A +LFI D DV +L+ ++
Sbjct: 673 TLIRYGATLHHCSEVDPFLRCAQANHAAT----PIDLLFIHFD----HADVDVLSEIKRL 724
Query: 986 KNGQLSDGHKVVLLVTSEA-DKDKYGSIFD---IVMCKPIRASTIASSIQQLLKVEIAER 819
+ +S K+ +L+ D+ + + +P+ + + ++ +
Sbjct: 725 R--AVSPWEKIPVLIYGRCHDRSLPAKMLQQGVNFLPEPVFPDVLLDELCRITQKSQQPE 782
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS-LLQPP 642
D++ + LR +L+VDD++ NL +A+ LK V +GK A+ Q
Sbjct: 783 VDSKPSRASLR-------VLLVDDSEDNLLLASTFLKSTPHIVQTATNGKQAVERFTQTS 835
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
RFD MD+QMPEMDGF+AT IR E KA+++ P++A+TA
Sbjct: 836 PRFDLILMDIQMPEMDGFQATAAIRAWE-KAHKKPP---------------CPIIALTAF 879
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
+ +C+ +G GYVSKP + +L +A+
Sbjct: 880 AMSDDESKCLSAGFTGYVSKPISKARLLEAM 910
Score = 130 bits (328), Expect = 3e-28
Identities = 70/200 (35%), Positives = 114/200 (57%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+E + +AEAA +AKS+FLAT SHEIRTPMN + Q+ + + G
Sbjct: 396 LELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTELLGETQLSIEQRGFLSVCRSAG 455
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
L+ +IND+LD +K+E+G LEL+ VPF+LR ++ D + +S EK + +F+ ++V
Sbjct: 456 ENLLQIINDILDISKVESGGLELQHVPFNLRRIVYDAGEVIRFRSHEKGLHQLIFIDESV 515
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRV 1680
P+ ++GDP R RQIL N +GNA+KFTE G + V + +++ ++ G
Sbjct: 516 PEWLLGDPARIRQILINFLGNAIKFTEAGTIATVVSTTAGKGSQV-EIVFRVIDTGIGIP 574
Query: 1679 ESTANGAFNTLSGFEAADRR 1620
ES + F+ +++ +R
Sbjct: 575 ESKQSVVFDAFKQLDSSTQR 594
Score = 47.8 bits (112), Expect = 0.003
Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 4/145 (2%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPE 600
L+ IL+VDD N +L K + SG DA+ L+ H F +DV MP
Sbjct: 3 LIEPKILIVDDRPANSMALRVSLSKLDVQIIEAPSGNDALGLM-VEHDFALMLLDVNMPG 61
Query: 599 MDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTA----DVIQATYEECI 432
MDG+E +A I S +P++ MTA D +AT +
Sbjct: 62 MDGYE-------------------VAKIARSWEQTKDIPIIFMTAIHHDDAHRATGYQL- 101
Query: 431 KSGMDGYVSKPFDEEQLYQAVSRLV 357
G Y+ KP D L V V
Sbjct: 102 --GAADYIDKPVDTTILLSKVKVFV 124
>gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
ref|YP_286549.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
Length = 923
Score = 153 bits (387), Expect = 4e-35
Identities = 116/388 (29%), Positives = 188/388 (48%), Gaps = 3/388 (0%)
Frame = -2
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
LA+ + DTG+GIPL AQ+++F F+QAD ST+R YGGTG+GL+I + L ++MGG+I S
Sbjct: 422 LALVVSDTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVES 481
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLK 1158
P G+ FT L ++ +ALP G + ++VD + V L+
Sbjct: 482 TPGKGAAFTVELDLPLGKLPVASPEK----QALPAT--GARVLVVDDSSTQREVLLALLR 535
Query: 1157 RLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDF-WRPETDVQLLNHLREQKN 981
G + + + A + A E ++L I++ P DV + LR +N
Sbjct: 536 GRGFIAEGAASSLAGLSVL---KAAVEEGEPYALLLIDTQMPDLPGCDV--VRALRADQN 590
Query: 980 GQLSDGHKVVLLVTSEADKDKYGSIFDIVMC--KPIRASTIASSIQQLLKVEIAERKDNQ 807
L+ +++ +A + I C KP+R + + +I+ L+
Sbjct: 591 --LAPTRVIIISAQVDALSKAERASLQIAACLPKPVRQAELLRAIETTLQRRSVSDTAVI 648
Query: 806 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDA 627
+ P+ L G+ +LV +DN+ NL VA A L++ G V G+ A+ +L D
Sbjct: 649 DSPA---RKLRGR-VLVAEDNESNLVVARAQLERMGLEVIAASDGQQALDIL-AEETVDL 703
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
MD QMP +DGF AT +R+ E + HLPV+A+TA+ ++
Sbjct: 704 VLMDCQMPVLDGFAATMALREREAVSGR-----------------HLPVIALTANAMKGD 746
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAVSR 363
E C +GMD Y++KP+ E+L ++R
Sbjct: 747 RERCKDAGMDEYLAKPYSGEELLTLLAR 774
Score = 146 bits (368), Expect = 7e-33
Identities = 77/166 (46%), Positives = 107/166 (64%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYA 2061
V + R++ K AEA AKS+FLAT SHEIRTPMNGV TQ+ +
Sbjct: 249 VEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFV 308
Query: 2060 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELA 1881
+ + G+ L+ +IND+LD +KIEAGKLEL+ V FDLR+L+++ + LFS +R K +EL
Sbjct: 309 EAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELV 368
Query: 1880 VFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
+ + +V GDP R RQI+TNL+GNAVKFTE G + +R+ + E
Sbjct: 369 ADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVE 414
>gb|AAL43321.1| two component sensor kinase/response regulator hybrid [Agrobacterium
tumefaciens str. C58]
ref|NP_533005.1| two component sensor kinase/response regulator hybrid [Agrobacterium
tumefaciens str. C58]
Length = 1231
Score = 153 bits (387), Expect = 4e-35
Identities = 89/188 (47%), Positives = 118/188 (62%)
Frame = -2
Query: 2318 TNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIR 2139
TN G + W+++ + KV E+ +++ L ++AEAAD AKS+FLA SHEIR
Sbjct: 644 TNSSGNY--WLIIVTDVTEM-----KVREE--ELQRLLSRAEAADRAKSEFLANMSHEIR 694
Query: 2138 TPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVP 1959
TPMNGV QK + G AL+T+IND+LD +KIEAG+++L +VP
Sbjct: 695 TPMNGVLGMAELLAKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVP 754
Query: 1958 FDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTE 1779
FD ++DVVSL SS + EK IEL V + +V VIGD RFRQI+TN+VGNAVKFTE
Sbjct: 755 FDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTE 814
Query: 1778 RGHVFVRV 1755
GHV V +
Sbjct: 815 TGHVLVEL 822
Score = 117 bits (292), Expect = 4e-24
Identities = 108/432 (25%), Positives = 187/432 (43%), Gaps = 36/432 (8%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
++ +++ ++ +ED+G+GIP+ + +F F Q D S +R + GTG+GL+I+ L
Sbjct: 823 SAQSAEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLV 882
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRP 1191
L G+I+ S GS F + + R L A ++ +++D
Sbjct: 883 GLFDGKINVVSEVGRGSAFEVDIPFQVMER-------RRDVPLLSVAIDDIRVLVIDDND 935
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILF----IESDFWRPE 1023
V + L+ GI V N G +G A +E AS+ F I D+ P
Sbjct: 936 VNRRILTEQLRSWGIDGHAVEN---------GPSGIAVLQEAASLGFAIDAIILDYHMPV 986
Query: 1022 TD-VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIV-----MCKPIRASTIA 861
+ + ++ +R K D +V L + + D+ ++F + + KP RA +
Sbjct: 987 MNGLDVVERIRADKR---FDDIAIVFLTSMDVVGDE--TLFTDLSVQAHLMKPARARLLR 1041
Query: 860 SSIQQLLK------------------------VEIAERKDNQNRPSFL--RSLLVGKNIL 759
S++ +++ AE+K P+ + RS ++L
Sbjct: 1042 STLFDVVRDVRLKRIRQHPLAQGTGGEKARPESRPAEKKQRAEAPATVPERSRPCLLDVL 1101
Query: 758 VVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEAT 579
V +DN VN V + L++ G V +GK A+ + + MDV MP M+G +AT
Sbjct: 1102 VAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQAWEE-YNPALILMDVSMPVMNGHQAT 1160
Query: 578 GQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKP 399
IR E A + R H+PV+ +TA +A E C+++GMD Y+SKP
Sbjct: 1161 QAIRAAEQAAGDSR---------------HVPVIGVTAHTQEADRERCLEAGMDDYLSKP 1205
Query: 398 FDEEQLYQAVSR 363
E L +++
Sbjct: 1206 ISPESLEDKIAQ 1217
>ref|ZP_01152332.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Halorhodospira halophila SL1]
gb|EAR45862.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal [Halorhodospira halophila SL1]
Length = 963
Score = 153 bits (387), Expect = 4e-35
Identities = 103/310 (33%), Positives = 151/310 (48%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R+++ + QAE A AKS+FLA SHEIRTPMN V Q DY + Q
Sbjct: 376 RRLKRARQQAEQATRAKSEFLANMSHEIRTPMNAVVGLSQLLLDTELNERQLDYLKKIQR 435
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
R L+ +IND+LD ++IE+G+LEL+ PFDL ++D + +LFS +REK IEL +
Sbjct: 436 SSRMLLGIINDILDFSRIESGQLELDTGPFDLGEVIDHLATLFSEAAREKEIELIYAIQP 495
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGG 1686
+P++ LVG++++ T+ +N+ +N + +GG
Sbjct: 496 ELPRM--------------LVGDSLRITQ-----------VLTNLLSNAI---KFTPRGG 527
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAIS 1506
VE +G AA+ R
Sbjct: 528 TVELEVREEAG--AGSAAANIR------------------------------------FQ 549
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
+ D+G+G+ + +RVF PF+QAD+ST+R YGGTG+GL I + L E MGG + TS P
Sbjct: 550 VRDSGIGMDAEQLERVFQPFVQADASTTRRYGGTGLGLGIGRRLVERMGGDLEVTSQPGQ 609
Query: 1325 GSTFTFSATL 1296
GSTF F+ L
Sbjct: 610 GSTFFFTLQL 619
Score = 62.0 bits (149), Expect = 2e-07
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGK---DAISLLQPPHRFDACFMDVQ 609
L G +IL+V+D+ VN VA L+K GA V E+G DA+ +P D MD+Q
Sbjct: 683 LTGFSILLVEDDAVNQEVATQFLEKTGARVRVAENGMAALDAVDDAEP----DLILMDLQ 738
Query: 608 MPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIK 429
MP MDGFEA+ ++ + ++A++A V+
Sbjct: 739 MPLMDGFEASRRLLETGCSRT---------------------IIALSAAVLDEDRRRAEA 777
Query: 428 SGMDGYVSKPFDEEQLY 378
+GM G ++KP ++E LY
Sbjct: 778 AGMRGLIAKPMEQEVLY 794
>gb|AAZ48415.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
ref|YP_286885.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal
[Dechloromonas aromatica RCB]
Length = 620
Score = 153 bits (386), Expect = 5e-35
Identities = 128/446 (28%), Positives = 194/446 (43%), Gaps = 7/446 (1%)
Frame = -2
Query: 2234 EDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQT 2055
E K+ + K +AE+A+ AKSQFLA SHE+RTPM G+ Q+D+A T
Sbjct: 227 ESKAKLRQAKEEAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTELDEQQRDFADT 286
Query: 2054 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF 1875
Q AL+ +IND+LD + IEA KL L + R ++ +V++L S + K I L
Sbjct: 287 IQRSANALLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSADAKNISLISQ 346
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNG 1695
+ D++P++ LVG+A++ QVL +N
Sbjct: 347 IADDLPEI--------------LVGDAIRL--------------------RQVL---LNL 369
Query: 1694 KGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTL 1515
G ++ T G+ E A + +D R L
Sbjct: 370 LGNAIKFTEQGSVT----LEVAHQ---------------------------PTDDGRQRL 398
Query: 1514 AISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSH 1335
+ DTG+G+ + +FTPF QAD S +R +GGTG+GLSIS+ L ELM G+IS S
Sbjct: 399 NFVVRDTGIGMTPGVVNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAESE 458
Query: 1334 PSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA------FKGMKAILVDGRPVRSAVT 1173
P VGSTF F H D+ S+ E P F + ++VD R + V
Sbjct: 459 PDVGSTFRF-----HIVADL---PETSVAEEQPQKADGERHFDARRILVVDDRQINRKVV 510
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHL 996
L+RLG V+ A G+ A + L + D P D + +
Sbjct: 511 GAMLERLGC---------HVLMAEHGEEALARLATEVVDLVL-MDCQMPVMDGFEATRRI 560
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDK 918
RE ++ ++ K++ + + + DK
Sbjct: 561 REGEDSRIDPATKIIAMTANAMEGDK 586
Score = 76.3 bits (186), Expect = 8e-12
Identities = 45/141 (31%), Positives = 75/141 (53%)
Frame = -2
Query: 770 KNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDG 591
+ ILVVDD ++N +V A L++ G +V E G++A++ L D MD QMP MDG
Sbjct: 495 RRILVVDDRQINRKVVGAMLERLGCHVLMAEHGEEALARL-ATEVVDLVLMDCQMPVMDG 553
Query: 590 FEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGY 411
FEAT +IR+ E + + ++AMTA+ ++ + C+ +GM+ Y
Sbjct: 554 FEATRRIREGE----------------DSRIDPATKIIAMTANAMEGDKQRCLAAGMNDY 597
Query: 410 VSKPFDEEQLYQAVSRLVVGT 348
+SKP +L + ++ + T
Sbjct: 598 ISKPIFAAELERILTTWLPAT 618
>gb|AAN49740.1| two-component hybrid sensor and regulator [Leptospira interrogans
serovar Lai str. 56601]
ref|NP_712722.1| two-component hybrid sensor and regulator [Leptospira interrogans
serovar Lai str. 56601]
Length = 935
Score = 152 bits (385), Expect = 7e-35
Identities = 112/399 (28%), Positives = 202/399 (50%), Gaps = 11/399 (2%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
+D++ L ++DTG+GI + + +F F Q DSST+R YGG+G+GL+ISK LAELM G+
Sbjct: 570 NDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE 629
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
I+ S + GS F+ S + +I ++ L T+ I + + +
Sbjct: 630 ITVKSQVNSGSEFSLSILTEKLEYEIPAGVQELHSKNLATS----AVISIQEFQFKEQIK 685
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDV-QLLNHL 996
++ +R G L+++ ++ G E+ + + +F P+ ++ ++LN L
Sbjct: 686 KF-CERNGFLVKMARTAKETIRII-------GEEERIGVFLTDLNF--PDMNLSEMLNEL 735
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDKY----GSIFD------IVMCKPIRASTIASSIQQ 846
++Q N L V+L + KD Y S+F+ +M KPI ++ + ++
Sbjct: 736 KKQ-NPSLK---LTVILFMEKELKDSYYLVTNSLFNRPGFQIFMMFKPILLEELSKNFEK 791
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+++ +K+ QN L S + IL+V+DN +N ++A L K G N +G +
Sbjct: 792 AFPIKVL-KKEKQNENKKLLSEKIPLQILLVEDNVINQKIALRLLTKLGYNADSALNGLE 850
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
I L+ + +D FMD+QMPE+DG+E T QIR+ + K+K
Sbjct: 851 GIEKLKTKN-YDLIFMDIQMPEIDGYETTFQIRK------DFGKSKPV------------ 891
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
++AMTA+ ++ E+C+++GM+ Y+SKP + + +
Sbjct: 892 -IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTI 929
Score = 133 bits (334), Expect = 6e-29
Identities = 74/185 (40%), Positives = 107/185 (57%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
KV ED ++ K AEAA AK+ FLA SHEIRTP+NGV QK+Y
Sbjct: 403 KVYED--SLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTFLNTEQKEY 460
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+ G+ L+ L+ND+LD ++IE+G+L+LE P L ++VV+LF + EK + +
Sbjct: 461 LDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPMAEEKGLVV 520
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
V NVP +I DP+R RQ+LTNL+GN++KFTE+G + + V + N + + H
Sbjct: 521 ESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHLSVEAEKFPNDKLRLIFHVK 580
Query: 1703 MNGKG 1689
G G
Sbjct: 581 DTGIG 585
>ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
Length = 1017
Score = 152 bits (385), Expect = 7e-35
Identities = 112/399 (28%), Positives = 202/399 (50%), Gaps = 11/399 (2%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
+D++ L ++DTG+GI + + +F F Q DSST+R YGG+G+GL+ISK LAELM G+
Sbjct: 652 NDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE 711
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
I+ S + GS F+ S + +I ++ L T+ I + + +
Sbjct: 712 ITVKSQVNSGSEFSLSILTEKLEYEIPAGVQELHSKNLATS----AVISIQEFQFKEQIK 767
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDV-QLLNHL 996
++ +R G L+++ ++ G E+ + + +F P+ ++ ++LN L
Sbjct: 768 KF-CERNGFLVKMARTAKETIRII-------GEEERIGVFLTDLNF--PDMNLSEMLNEL 817
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDKY----GSIFD------IVMCKPIRASTIASSIQQ 846
++Q N L V+L + KD Y S+F+ +M KPI ++ + ++
Sbjct: 818 KKQ-NPSLK---LTVILFMEKELKDSYYLVTNSLFNRPGFQIFMMFKPILLEELSKNFEK 873
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+++ +K+ QN L S + IL+V+DN +N ++A L K G N +G +
Sbjct: 874 AFPIKVL-KKEKQNENKKLLSEKIPLQILLVEDNVINQKIALRLLTKLGYNADSALNGLE 932
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
I L+ + +D FMD+QMPE+DG+E T QIR+ + K+K
Sbjct: 933 GIEKLKTKN-YDLIFMDIQMPEIDGYETTFQIRK------DFGKSKPV------------ 973
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
++AMTA+ ++ E+C+++GM+ Y+SKP + + +
Sbjct: 974 -IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTI 1011
Score = 133 bits (334), Expect = 6e-29
Identities = 74/185 (40%), Positives = 107/185 (57%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
KV ED ++ K AEAA AK+ FLA SHEIRTP+NGV QK+Y
Sbjct: 485 KVYED--SLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTFLNTEQKEY 542
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+ G+ L+ L+ND+LD ++IE+G+L+LE P L ++VV+LF + EK + +
Sbjct: 543 LDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPMAEEKGLVV 602
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
V NVP +I DP+R RQ+LTNL+GN++KFTE+G + + V + N + + H
Sbjct: 603 ESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHLSVEAEKFPNDKLRLIFHVK 662
Query: 1703 MNGKG 1689
G G
Sbjct: 663 DTGIG 667
>dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str.
'morsitans']
ref|YP_454188.1| two-component regulatory protein [Sodalis glossinidius str.
'morsitans']
Length = 925
Score = 152 bits (385), Expect = 7e-35
Identities = 88/210 (41%), Positives = 126/210 (60%), Gaps = 13/210 (6%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 260 DQATSDLRETLEQMEIQNVELDLAKKRAQEAVRIKSKFLANMSHELRTPLNGVIGFTRQT 319
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ+DY QT + G L+++INDVLD +K+EAGKL LE +PF LR+++D+VV L
Sbjct: 320 LKTPLSPTQRDYLQTIERSGNHLLSIINDVLDFSKLEAGKLMLETIPFALRAILDEVVIL 379
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLA-- 1746
+ + EK +EL + V VP+ VIGDP R +Q++TNL+GNA+KFTE+GH+ +RV
Sbjct: 380 LAHTAHEKGLELILQVQREVPEYVIGDPLRLQQVMTNLIGNAIKFTEQGHIIIRVSCQGH 439
Query: 1745 ENSNMEANQVLHGAMNGKGGRVESTANGAF 1656
E +E N + G R +S AF
Sbjct: 440 ERERVEINVQIRDTGIGIPERQQSQLFQAF 469
Score = 77.4 bits (189), Expect = 4e-12
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+ +RV + + I DTG+GIP + Q ++F F QAD+S +R +GGTG+GL I++ L MGG
Sbjct: 440 ERERVEINVQIRDTGIGIPERQQSQLFQAFRQADASIARRHGGTGLGLVITQKLVHEMGG 499
Query: 1355 QISFTSHPSVGSTFTFSATLK---HSYKD 1278
+I+F S GSTF F L+ H++ D
Sbjct: 500 EITFRSRTGRGSTFWFHIPLQINCHAWVD 528
Score = 65.5 bits (158), Expect = 1e-08
Identities = 45/152 (29%), Positives = 70/152 (46%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
++ VDDN NL++ A L++ S +A++ + D MD+QMPE+DG
Sbjct: 670 VMAVDDNPANLKLIGALLQEQVEQTLLCNSAAEAVAYARKKP-LDIILMDIQMPEIDGLR 728
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
A IRQ+ L A H P++A+TA I + + +GM ++
Sbjct: 729 AAELIRQLPLHA-------------------HTPIVAVTAHTISDERQRLLDAGMVDCLA 769
Query: 404 KPFDEEQLYQAVSRLVVGTTDSAV*CSKYDGP 309
KP DE L + +SR G D A + +GP
Sbjct: 770 KPIDEAMLRRLLSR--YGIHDPASPAAPREGP 799
>ref|NP_900552.1| probable sensor/response regulator hybrid protein [Chromobacterium
violaceum ATCC 12472]
gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
violaceum ATCC 12472]
Length = 902
Score = 152 bits (384), Expect = 9e-35
Identities = 114/400 (28%), Positives = 188/400 (47%), Gaps = 11/400 (2%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D + L + DTG+G+ + + ++F F QAD+STSR YGGTG+GL+IS+ LAE+MGG++
Sbjct: 316 DSLLLHFEVSDTGIGLSAEQKAKLFQSFQQADTSTSRKYGGTGLGLAISRKLAEMMGGEV 375
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP-TAFKGMKAILVDGRPVRSAVT 1173
S P GSTF F+A L E LP + +A++VD +
Sbjct: 376 GVDSEPGKGSTFWFTARL---------GKGEPHPERLPGVGMRNRRALVVDDSRAAREIL 426
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP------ETDVQ 1011
L+ + V+ +A A ++ ++F++ WR E +
Sbjct: 427 AEQLRGMTFR---VDEAEDGEQALERVEQAERDGDRYEVVFLD---WRMPRMDGIEAARR 480
Query: 1010 LLNH---LREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
L+ H LR + G + V + +A ++ + KP+ AS + S +L
Sbjct: 481 LMRHDAALRPHRVMVTGYGREEVFRLAEDAG-------IEMTLIKPVSASVLFDSTMRLF 533
Query: 839 KVEIAE-RKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDA 663
E A + S L G +L+ +DN++N +VA L V+ +G++A
Sbjct: 534 GGEAAAGARAAPAADEIDLSPLRGMRVLLAEDNELNQQVATELLSAADIEVTVASNGEEA 593
Query: 662 ISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
+SL + FD MD+QMP MDG EAT ++R++ P
Sbjct: 594 LSLAE-AQPFDLALMDMQMPVMDGLEATRRLRRLASWGKR-------------------P 633
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+LAMTA+ + E C+++GM+ +V+KP D ++L+ A+ R
Sbjct: 634 ILAMTANAMSGDRERCLEAGMNDHVTKPIDPDKLFAALKR 673
Score = 133 bits (334), Expect = 6e-29
Identities = 80/207 (38%), Positives = 113/207 (54%), Gaps = 1/207 (0%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
K+++ +AE+A AKS FLA SHEIRTPMN + Q+DY Q
Sbjct: 153 KLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLALRTGLDPKQRDYLQKIHNS 212
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G+ L+ +IND+LD +KIEAGKL+LE FDL ++D++ +L K+ K +EL +
Sbjct: 213 GKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNLAALLGEKAEAKGLELIFDIGPG 272
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV-CLAENSNMEANQVLHGAMNGKGG 1686
+ + +IGDP R QIL N NAVKFTERG V VR C E + + +LH ++ G
Sbjct: 273 LDRSLIGDPLRLGQILINYANNAVKFTERGEVTVRARCREERGD---SLLLHFEVSDTG- 328
Query: 1685 RVESTANGAFNTLSGFEAADRRNSWQY 1605
+ +A F+ AD S +Y
Sbjct: 329 -IGLSAEQKAKLFQSFQQADTSTSRKY 354
>ref|ZP_00591131.1| PAS [Prosthecochloris aestuarii DSM 271]
gb|EAN23501.1| PAS [Prosthecochloris aestuarii DSM 271]
Length = 1040
Score = 152 bits (383), Expect = 1e-34
Identities = 129/410 (31%), Positives = 199/410 (48%), Gaps = 13/410 (3%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D+V L I DTG+GI + D +F F Q D+S +R YGGTG+GLSI+K L ELM G I
Sbjct: 664 DQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGGTGLGLSIAKDLVELMQGSI 723
Query: 1349 SFTSHPSVGSTFTFSATLK---HSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSA 1179
S + GS F F+A L H+ +RSL G KA++VD
Sbjct: 724 GVESTVNQGSLFWFTAKLNRQTHATLQAQESKNRSLF--------GQKALIVDDNATNRE 775
Query: 1178 VTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNH 999
+ L G+ + +N A A+ S + +I I D PE D +L
Sbjct: 776 ILSKRLLSWGMRPEESDNGQ---DALDMLIRASTSTDAFTIAVI--DMQMPEMDGVMLGK 830
Query: 998 LREQKNGQLSDGHKVVLLVTSEADK------DKYGSIFDIVMCKPIRASTIASSIQQLLK 837
+ +S ++++TS + +K G F + KP++ + +++ L
Sbjct: 831 AIREHEALMS---LQMIMMTSLGNNGESSLAEKAG--FSAWLQKPVQIKKLKNALIALSA 885
Query: 836 VE--IAERKDNQNRPSFL--RSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGK 669
+ A+ + +Q +P+ L R IL+V+DN VN +VA LKK+G +V V +GK
Sbjct: 886 TQEPEADEQPSQKKPNNLLNRFAECKARILLVEDNIVNQQVAMLMLKKFGLHVDGVANGK 945
Query: 668 DAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
+A+S L +D MD+QMP MDG EAT +IR E T+A
Sbjct: 946 EALSALM-SLPYDVVLMDIQMPVMDGLEATRRIRNGEC---------------GTSA--- 986
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDS 339
+P++AMTA Q+ E C+ +GM+ YVSKP +++ L + + + +D+
Sbjct: 987 IPIIAMTAHAKQSDRELCLATGMNDYVSKPVNQQALADTLEKWLPKHSDT 1036
Score = 137 bits (346), Expect = 2e-30
Identities = 82/209 (39%), Positives = 116/209 (55%), Gaps = 1/209 (0%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
K+ RK ++L QA+ A AKS+FLA SHEIRTPMNGV Q Y
Sbjct: 494 KLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETDLTPQQHRY 553
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
A T ++L+ LIND+LD +KIEAGKL LE + FDL+ LMDD + F+ ++ +K +E
Sbjct: 554 AGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEF 613
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
+ +P + GDP R RQIL N+ GNAVKFT +G + + V L +S+ + VL
Sbjct: 614 LCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTSKGEIAIYVTL--DSDCDDQVVLRFC 671
Query: 1703 MNGKG-GRVESTANGAFNTLSGFEAADRR 1620
+ G G + + F + +A+ R
Sbjct: 672 IRDTGIGIAKEKIDTLFEKFTQIDASATR 700
>ref|NP_901291.1| probable sensor/response regulatory hybrid protein [Chromobacterium
violaceum ATCC 12472]
gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium
violaceum ATCC 12472]
Length = 1748
Score = 151 bits (382), Expect = 2e-34
Identities = 118/389 (30%), Positives = 190/389 (48%), Gaps = 8/389 (2%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V L I + DTG+GI + R+F F QA++ST+R +GGTG+GL IS+ L ELMGGQ+
Sbjct: 1177 VELRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQLRV 1236
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GS F F TL G ++ LP + ++VD P+ +
Sbjct: 1237 ESQLGCGSRFWFDLTL--------GMAADQPLAQLPEPLGQLNVLVVDDNPLAGEILMDT 1288
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQ 987
+ +G + + ++ G G+AG R ++ D+ P D V + +R+Q
Sbjct: 1289 ISTVGWRAEYADGGEEALEKVHGA-GSAGQRYDVVLM----DWRMPGLDGVGVAEVMRQQ 1343
Query: 986 KNGQLSDGHKVVLLVTSEADK------DKYGSIFDIVMCKPIRASTIASSIQQLLKVEIA 825
G D V+++VT+ + ++ F+ + KPI + ++ + + E
Sbjct: 1344 LAG---DKPPVIIMVTAFGREVLAEAAERPNPPFNDFLTKPITPQQLVDAVVRSVTGE-G 1399
Query: 824 ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS-LLQ 648
E + +F R L G ++L+V+DN +N +VA+ L++ GA VS E G +S +
Sbjct: 1400 EAERTPATTAFGRR-LDGMSVLLVEDNALNRQVASELLQEEGARVSLAEGGLSGVSQAVS 1458
Query: 647 PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMT 468
FD MDVQMP++DG EAT +IR +++ LP+LAMT
Sbjct: 1459 ADPAFDIVIMDVQMPDIDGLEATRRIR-ADMRCQ------------------RLPILAMT 1499
Query: 467 ADVIQATYEECIKSGMDGYVSKPFDEEQL 381
A+ QA C+ +GM+ +V KP D ++L
Sbjct: 1500 ANASQADRAACLAAGMNDHVGKPIDIDEL 1528
Score = 125 bits (315), Expect = 9e-27
Identities = 67/153 (43%), Positives = 92/153 (60%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K QAE A + KSQFLA SHEIRTPMN V Q DY Q ++
Sbjct: 1015 EAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTRLDERQLDYVGKIQAAAKS 1074
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L+ L+ND+LD +KI+AGKL+L+ PFDL LM ++ + S + +K +E+ + +P
Sbjct: 1075 LLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLSGNTNDKDVEVLFRMEPTLPA 1134
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
++IGD R +QIL NL GNA+KFT +G V + V
Sbjct: 1135 MLIGDKLRLQQILINLAGNALKFTTQGQVVLAV 1167
>ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
25196]
Length = 1118
Score = 151 bits (382), Expect = 2e-34
Identities = 123/411 (29%), Positives = 193/411 (46%), Gaps = 18/411 (4%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V+L IS+ED+G+GI +F F QAD+ST+R YGGTG+GL+ISK L +LMGG I
Sbjct: 571 DEVSLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGTI 630
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
+ S GSTF F+ L K+ D+ L ++ ++VD V +
Sbjct: 631 AAKSRVGAGSTFWFTLPLA-LQKNWPTDA------GLHIDLTHVRVLIVDDNAANRLVLQ 683
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLRE 990
L+ + + + ++A + A+G + +IL D P+ D ++L R
Sbjct: 684 EQLRSWRMRIGSCPSGAEALRALHTSH-ASGDPYRIAIL----DHQMPDMDGEMLG--RT 736
Query: 989 QKNGQLSDGHKVVLLVTSEADKD------KYGSIFDIVMCKPIRASTIASSIQQLLKVEI 828
K L +V+L + + D K G F + KP R S + S++ + +
Sbjct: 737 IKADPLLRSIHLVMLSSLGQEGDLRERLQKIG--FAAYLVKPARQSELLSTLVNIWDAQR 794
Query: 827 AERKDNQ-NRPSF-----------LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSC 684
+R N ++P F L G +L+ +DN N V A L+ G V
Sbjct: 795 HQRTINLISQPFFPANPEMQAADSSNGLFAGTRVLLAEDNATNQIVGAMILRNLGCLVDV 854
Query: 683 VESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGST 504
+G++A+ ++ +D FMD +MPEMDGFEAT +R+
Sbjct: 855 ATNGREAMEMVD-AFLYDMVFMDCEMPEMDGFEATAALRR------------------RP 895
Query: 503 TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVG 351
++ LPV+A+TA +Q E C+++GMD Y+SKP E A+ R + G
Sbjct: 896 DSKSRLPVIAVTAQAMQGDRERCLRAGMDDYISKPVKLEDFAAALKRWMPG 946
Score = 130 bits (327), Expect = 4e-28
Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R+++ + AEAA+ AKS+FLA SHEIRTPMNGV +Q++ A A+
Sbjct: 406 RELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNTTLTPSQRELAGLARA 465
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSK-SREKCIELAVFVC 1869
G L+ +IND+LD +KIEAGKL + VPFDL +++V + + + +R+ + + V
Sbjct: 466 SGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPARKANVNVIVRYL 525
Query: 1868 DNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
NVP+ V GD R RQ+L NL NA+KFT++GHV + V
Sbjct: 526 PNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGHVLIDV 563
>gb|AAK54089.2| histidine kinase DhkH [Dictyostelium discoideum]
Length = 1147
Score = 151 bits (381), Expect = 2e-34
Identities = 104/337 (30%), Positives = 157/337 (46%), Gaps = 30/337 (8%)
Frame = -2
Query: 2228 CRKMEELKT---QAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXX--XXXTQKDY 2064
C + + KT + E A+ +K+ FL T SHE+RTP+ G+ Q D
Sbjct: 243 CTDVNDQKTAQDRIENAEKSKALFLQTMSHEMRTPLAGIMGINSWLSTSSPQLTSEQLDG 302
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
T MC AL+ LIN++LD +K+E K+ LE F +++D V + SS++ +K +++
Sbjct: 303 CHTIDMCAEALLVLINNILDLSKLEENKIILEETEFYPTKIVEDSVDILSSQAEQKKLDI 362
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFT-ERGHVFVRV---------------- 1755
+ N V+GD +R RQ+LTNL+ N+VKFT G + V
Sbjct: 363 IFQLKYNCLSKVVGDFYRIRQVLTNLISNSVKFTPANGQIIVGCEIYHETTPSTRKRSSL 422
Query: 1754 --------CLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFX 1599
C NSN N H N T +G+FN +GF + +
Sbjct: 423 DSIEITIPCNHNNSNNSNNN--HNHNNNNNNNNHLTCSGSFNN-NGFNHGHHHHHHHHHH 479
Query: 1598 XXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSR 1419
G+ L + D G+GIP + ++++F F Q D+ST+R
Sbjct: 480 HHHDKHCDQKIIVPGKYGK--------LLFWVIDNGIGIPEEGREKLFQTFSQYDASTTR 531
Query: 1418 NYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
YGG+G+GL+ISK L +L+GG I F S GS+F F
Sbjct: 532 KYGGSGLGLAISKRLTQLLGGDIWFESQKGKGSSFHF 568
Score = 56.6 bits (135), Expect = 7e-06
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYG---ANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMD 594
I+V +D+ VN +VA L K G + V +G+ AI ++ D MD+QMPE+D
Sbjct: 1014 IMVAEDSLVNQKVACRFLTKLGYKKEEIIFVVNGQQAIDHIENVEMVDVILMDMQMPEVD 1073
Query: 593 GFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDG 414
G EAT +IR + TT + ++ +TA+ ++C SGM
Sbjct: 1074 GCEATTRIR----------------MRYPTTGPH---IIGLTANAFNEDKDKCFLSGMCH 1114
Query: 413 YVSKP 399
Y++KP
Sbjct: 1115 YLAKP 1119
>ref|ZP_00512843.1| PAS [Chlorobium limicola DSM 245]
gb|EAM42494.1| PAS [Chlorobium limicola DSM 245]
Length = 1397
Score = 150 bits (380), Expect = 3e-34
Identities = 114/410 (27%), Positives = 192/410 (46%), Gaps = 21/410 (5%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
+ V + S++DTG+GIP + DR+F F Q D+S +R YGGTG+GL+IS+ L ELM G+I
Sbjct: 1021 EEVLVRFSVKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISRQLVELMSGEI 1080
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S +GS F F+ +LK + ++ + +++ G + ++VD + R
Sbjct: 1081 GVNSQSGIGSEFWFTLSLKKNI--FPSENGQYPLDSI----TGTRLLVVDDNAENRNMLR 1134
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLRE 990
L G+ + V+ + ++ Q G + +I+ D PE D +L +
Sbjct: 1135 MLLTSWGVRVSEVSCASTAIERL-RQAAEEGDPFRIAII----DMEMPEIDGLMLGRSIK 1189
Query: 989 QKNGQLSDGHKVVLLVTSEADKDKY-GSIFDIVMCKPIRASTIASSIQQLL--------- 840
+ ++ + D +K S F + KP+R S + +++ ++L
Sbjct: 1190 DETALADTALLMMNSIGRRPDNEKLRRSGFFSFLVKPVRQSELYNTVSEVLFSRDIDPCN 1249
Query: 839 -----------KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGAN 693
V ++E D++ S +R IL+ +D+ VN V L K G
Sbjct: 1250 AESLQEKLAAGSVTLSEAVDSEKNDSPVR-------ILLAEDSAVNQLVVTGILSKLGYV 1302
Query: 692 VSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIE 513
V V +G++A++ L+ +D MD+QMPEMDG EAT IR +
Sbjct: 1303 VDPVFNGQEALARLR-EFAYDLVIMDIQMPEMDGLEATRIIRD----------------Q 1345
Query: 512 GSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
S + +PV+A+TA + E C++SGM+ YVSKP D L + +
Sbjct: 1346 ASAVLRHDVPVIALTAHAMHGDREICLQSGMNDYVSKPIDPPALIGVIKK 1395
Score = 150 bits (379), Expect = 3e-34
Identities = 81/162 (50%), Positives = 104/162 (64%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
+ + AEAA+ AKS+FLA SHEIRTPMNGV Q+ +AQTA G +
Sbjct: 861 DARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNTSLAEEQRSFAQTALASGES 920
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L+T+IND+LD +KIEAGKLELE + FDLR L+DD ++ + K+ +K +E +VP
Sbjct: 921 LLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGLEFICAALPDVPV 980
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNME 1728
IGDP R RQILTNL GNAVKFT +G V V V L ++ E
Sbjct: 981 RFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRETDEE 1022
Score = 44.3 bits (103), Expect = 0.035
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR----FDACFMDV 612
+ G +LVVDDN N + L +G VS V AI L+ F +D+
Sbjct: 1115 ITGTRLLVVDDNAENRNMLRMLLTSWGVRVSEVSCASTAIERLRQAAEEGDPFRIAIIDM 1174
Query: 611 QMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECI 432
+MPE+DG I+ TA +L M + + E+
Sbjct: 1175 EMPEIDGLMLGRSIKD-------------------ETALADTALLMMNSIGRRPDNEKLR 1215
Query: 431 KSGMDGYVSKPFDEEQLYQAVSRLV 357
+SG ++ KP + +LY VS ++
Sbjct: 1216 RSGFFSFLVKPVRQSELYNTVSEVL 1240
>ref|ZP_00911282.1| PAS [Clostridium beijerincki NCIMB 8052]
gb|EAP58084.1| PAS [Clostridium beijerincki NCIMB 8052]
Length = 951
Score = 150 bits (380), Expect = 3e-34
Identities = 115/411 (27%), Positives = 201/411 (48%), Gaps = 8/411 (1%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ +++ L + DTG+GI + ++F F QAD+ST+R YGGTG+GLSI + L +M
Sbjct: 471 EEENEIALLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMM 530
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
G+I+ S GSTF F LK IS +S + ++ + ++VD
Sbjct: 531 DGEITVDSVLDKGSTFRFCVRLK-----ISKRASEHI--SIFEKVNDVNILIVDNDENSR 583
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+T +LK G+ + V+ + N ++ K SI+ IE + +
Sbjct: 584 KITSSYLKGTGLHIIEVDGAGEAISTIISNN---DTKNKISIVIIECEI----PGMNCYE 636
Query: 1001 HLREQKNGQLSDGHKVVLLVTSEADKDK----YGSIFDIVMCKPIRASTIAS--SIQQLL 840
R KN ++ K++LL++ K YG F + KP++ + ++ L
Sbjct: 637 LARTLKNIPIAKNIKLILLMSRYKGDFKAAMEYG--FSSYLTKPLKRDDLLDCIAVNLGL 694
Query: 839 KVEIAERKDNQNRPSFLRSL--LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
K E E ++ N+ + ++++ L IL+ +DN+VN ++ + LK G GK+
Sbjct: 695 KKEDEEHFEDSNK-NVVKNIYNLSEIRILLAEDNEVNRKIFISMLKSRGITCDVALDGKE 753
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A+ + +D FMD QMP MDG+EAT +IR++E E RK H
Sbjct: 754 ALRKVS-EEDYDIVFMDCQMPVMDGYEATAEIRRIE----ENRK--------------HT 794
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV 333
++A+TA+ ++ E+CIKSGMD Y++KP + +++ + ++ + +
Sbjct: 795 KIVAVTANAMEGDSEKCIKSGMDNYITKPINFGIVFKMIEESIINKKHNTI 845
Score = 140 bits (353), Expect = 4e-31
Identities = 71/163 (43%), Positives = 104/163 (63%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ + K +AE+A++AKSQFLA SHEIRTPMNG+ Q+++ + A+
Sbjct: 312 ELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSLEQREFVREAKSA 371
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
L+ +IND+LD +KIEA KL LE + F+LR++++D VSLF K+ EK I+L +
Sbjct: 372 SDILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTLEKGIQLYTIIDPT 431
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSN 1734
+P VIGDP R +QIL NL+ N VKFT+ G + ++V E N
Sbjct: 432 IPDEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIKVDYFEEEN 474
>gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter
sulfurreducens PCA]
ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter
sulfurreducens PCA]
Length = 772
Score = 150 bits (379), Expect = 3e-34
Identities = 118/367 (32%), Positives = 163/367 (44%), Gaps = 6/367 (1%)
Frame = -2
Query: 2231 DCRKMEELKTQAEAADV----AKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
D KME A AA V AK FLA SHEIRTPMNGV Q++Y
Sbjct: 271 DRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDLDPRQREY 330
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
A+ A+ +++ +IN VLD +KIE+ +L LEAVPF +R ++ V F + + K + +
Sbjct: 331 AEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAARKGVMV 390
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
A V +VP+ V+GDP RF QI+ AN V
Sbjct: 391 AADVPPHVPETVVGDPVRFSQIV-----------------------------ANLV---- 417
Query: 1703 MNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDR 1524
G V+ T GA G A D R
Sbjct: 418 ----GNAVKFTEQGAITVQLGAAAVD-------------------------------DCR 442
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
+ ++ S+ DTG GI + D +F PF+QAD ST+R +GGTG+GL+I + L E M G IS
Sbjct: 443 IDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISV 502
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRS--LTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S P +GSTF+F L+ + DI+ + A + + +LVD V V
Sbjct: 503 ASEPGMGSTFSFRVRLRGAPDDIASPPPATGWAVAEKSVAVRPLSVLLVDDSAVSRKVVS 562
Query: 1169 YHLKRLG 1149
L+ G
Sbjct: 563 LLLESDG 569
Score = 71.6 bits (174), Expect = 2e-10
Identities = 43/135 (31%), Positives = 69/135 (51%)
Frame = -2
Query: 767 NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGF 588
++L+VDD+ V+ +V + L+ G V+ G +A++ + FD MDVQMP MDGF
Sbjct: 547 SVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGR-EAFDLVLMDVQMPVMDGF 605
Query: 587 EATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYV 408
EA IR G LP++A+TA + E C+++G D Y+
Sbjct: 606 EAMRAIRA-----------------GEAAGGARLPIIALTARALAGDRELCLEAGADDYL 648
Query: 407 SKPFDEEQLYQAVSR 363
+KP + +L + +SR
Sbjct: 649 AKPVNFSELRRVISR 663
>ref|ZP_00550287.1| PAS [Desulfuromonas acetoxidans DSM 684]
gb|EAM72217.1| PAS [Desulfuromonas acetoxidans DSM 684]
Length = 1969
Score = 150 bits (379), Expect = 3e-34
Identities = 120/405 (29%), Positives = 189/405 (46%), Gaps = 18/405 (4%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+SD + + ++ DTGVG+ Q +F F Q D ST+R +GGTG+GL+IS+ L +LMGG
Sbjct: 1374 ESDTIWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDLMGG 1433
Query: 1355 QISFTSHPSVGSTFTFSATL--------KHSYKDISGDSSRSLTEALPTAFKGMKAILVD 1200
+I S P GS F +H+Y+ I G + ++ D
Sbjct: 1434 EIGVKSEPGSGSKFWVDLPFGRVVNRKDQHNYQPIP---------------PGTRVLVAD 1478
Query: 1199 GRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS-----ILFIESDF 1035
P + L IL+ ++ + V A G A G+ A + D+
Sbjct: 1479 DHP----------EALEILVYMLTQLQCSVTAVSGGLEAVGAVSMADHTHTPFELVLMDW 1528
Query: 1034 WRPETDVQLLNHLREQKNGQLSDGHKVVL-----LVTSEADKDKYGSIFDIVMCKPIRAS 870
P+T+ L+ + + +L+ K++L L SE K KYG I I KPI
Sbjct: 1529 EMPKTNG--LDAAQLILSEKLTAPPKLILISGTHLKNSEILK-KYGFIGFI--AKPITPV 1583
Query: 869 TIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANV 690
++ +S++++L E N + G+++L+ +DN +N VA L+ G NV
Sbjct: 1584 SLKTSLEEILNQHPGETNGNLRHLERKLNNHAGQHLLLAEDNPLNQEVALEMLESLGLNV 1643
Query: 689 SCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
VE G +A+ L + H FD MD+QMP MDG EAT +IR + N
Sbjct: 1644 EVVEDGLEAVELAR-QHDFDLILMDIQMPVMDGLEATRRIRTLPGCKN------------ 1690
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ 375
P+LAMTA+ + + C ++GM+ +++KP D E LY+
Sbjct: 1691 -------TPILAMTANAFEEDQKNCSEAGMNAHIAKPVDPELLYK 1728
Score = 105 bits (262), Expect = 1e-20
Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 5/222 (2%)
Frame = -2
Query: 2255 SRYDKVTEDCRKMEEL---KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXX 2085
S +D VT + E L K AE A+ AKS FLA SHEIRTPMN +
Sbjct: 1201 SMFDDVTAEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKRDAT 1260
Query: 2084 XXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKS 1905
Q + + L+ +IND+LD +KIEAGK+ LE + F+L +++D V SL S K+
Sbjct: 1261 PQ-QVGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRSLLSEKA 1319
Query: 1904 REKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEA 1725
+K +E + D +P+ + GD R QIL N NAVKFT G + + AE E+
Sbjct: 1320 VDKGLEFITNIAD-LPQYLHGDGLRLGQILLNFAANAVKFTTNGSISLH---AEQLGEES 1375
Query: 1724 NQV-LHGAMNGKG-GRVESTANGAFNTLSGFEAADRRNSWQY 1605
+ + + ++ G G E+ F FE DR + Q+
Sbjct: 1376 DTIWIRFTVSDTGVGMTEAQQRHLF---EAFEQGDRSTTRQF 1414
Score = 37.7 bits (86), Expect = 3.3
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYG-GTGIGLSI 1386
SD T+ + I DTG G+P D++F P T+ G GTG+GLSI
Sbjct: 13 SDAHTICVEISDTGCGMPQSVIDKIFDPLF-----TTNPVGLGTGLGLSI 57
>ref|ZP_00676459.1| PAS [Pelobacter propionicus DSM 2379]
gb|EAO38053.1| PAS [Pelobacter propionicus DSM 2379]
Length = 785
Score = 150 bits (379), Expect = 3e-34
Identities = 130/436 (29%), Positives = 182/436 (41%), Gaps = 6/436 (1%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA+ AKSQFLA SHEIRTPMNGV Q A A L+
Sbjct: 398 KENAEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRLDENQLRLASMAHGSADKLL 457
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
+IND+LD +KIEAG+ +L F LR + +V +F K+++K I L + D+VP
Sbjct: 458 EIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSVPN-- 515
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
T RG + QVL +N G V+ T
Sbjct: 516 ---------------------TVRG-----------DGVRLRQVL---INLVGNAVKFTE 540
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
NG Q F G + ++ ++ L + DTG
Sbjct: 541 NG-----------------QIFL--------------GVSLMETTAENTQLRFEVRDTGT 569
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GIPL AQ +F F QAD+S +R + GTG+GL+IS+ L E MGG I S P GS F F
Sbjct: 570 GIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGSLFWF 629
Query: 1307 SATLKHSYKD---ISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQ 1137
+ L+H+ + D + P + +L + PV + R L+ LG +
Sbjct: 630 TLCLRHAQSIPALLPADDAMEENSERPATQRTPLVLLAEDNPVNQELGRLVLESLGCKVD 689
Query: 1136 VVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD---VQLLNHLREQKNGQLSD 966
VV N V+A S + ++F+ D PE D RE + G+ +
Sbjct: 690 VVGNGRQAVEAV--------SDREYDLVFM--DCQMPEVDGYEATRSIRQREAETGEQTR 739
Query: 965 GHKVVLLVTSEADKDK 918
V+ L D D+
Sbjct: 740 HIPVIALTAHAMDGDR 755
Score = 99.0 bits (245), Expect = 1e-18
Identities = 64/184 (34%), Positives = 93/184 (50%)
Frame = -2
Query: 914 GSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVN 735
GS+F +C A SI LL + A ++N RP+ R+ LV L+ +DN VN
Sbjct: 624 GSLFWFTLCL-----RHAQSIPALLPADDA-MEENSERPATQRTPLV----LLAEDNPVN 673
Query: 734 LRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMEL 555
+ L+ G V V +G+ A+ + +D FMD QMPE+DG+EAT IRQ E
Sbjct: 674 QELGRLVLESLGCKVDVVGNGRQAVEAVSD-REYDLVFMDCQMPEVDGYEATRSIRQREA 732
Query: 554 KANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ 375
+ E+ + H+PV+A+TA + E C+ +GMD Y SKPF QL
Sbjct: 733 ETGEQTR--------------HIPVIALTAHAMDGDRETCLSAGMDDYASKPFTPIQLQA 778
Query: 374 AVSR 363
++R
Sbjct: 779 LLNR 782
>gb|ABA88306.1| Hpt domain protein [Pelobacter carbinolicus DSM 2380]
ref|YP_356476.1| Hpt domain protein [Pelobacter carbinolicus DSM 2380]
Length = 1014
Score = 150 bits (379), Expect = 3e-34
Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 4/390 (1%)
Frame = -2
Query: 1520 TLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFT 1341
T+ +SI D+G+GI Q ++F PF QAD ST+R YGGTG+GLSI + L MGGQI
Sbjct: 510 TIVVSIRDSGIGIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVF 569
Query: 1340 SHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHL 1161
S P GS F F T+ KD + A K M+A++VD P+ + L
Sbjct: 570 SQPGQGSNFWFEMTMT---KDPACGMHHV---ACIPELKNMQALIVDPHPLTRRSVQQQL 623
Query: 1160 KRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDV-QLLNHLREQK 984
+ GI + ++ + QN I+ + P+ +L+ H +
Sbjct: 624 REWGIKAKTADHGKKALAMLQAQN--------FQIILVALTL--PDMPGRELIQHCCDV- 672
Query: 983 NGQLSDGHKVVLLVTSEADKDKYGSIFDIV--MCKPIRASTIASSIQQLLKVEIAERKDN 810
Q H + L +T + S V + KPIR S + + +E +
Sbjct: 673 -AQTVPKHIITLGLTGQKLPPCRISDATTVSYLTKPIRPSKLLLHLTNAPPLEDNVQSQT 731
Query: 809 Q-NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRF 633
P+ S +L+V+DN VN +VA L+K G NV+ G++A++ F
Sbjct: 732 PCPNPASETSTPTKARVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYSHSP-F 790
Query: 632 DACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQ 453
D FMD QMP MDG+EAT IR A+E++ +K TT P++AMTA +
Sbjct: 791 DLLFMDCQMPNMDGYEATRAIR-----ADEKQHHK-------TTC----PIIAMTAHTLP 834
Query: 452 ATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
E C+K+GMD Y+ KPF Q+ ++R
Sbjct: 835 GDRERCLKAGMDDYLGKPFTMRQVRTLLNR 864
Score = 146 bits (369), Expect = 5e-33
Identities = 70/162 (43%), Positives = 108/162 (66%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
+++ +++++ + AE A AKSQFL SHEIRTPMNGV Q+
Sbjct: 336 EQLQSSIQELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLAEEQRQ 395
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
A T GRAL+ +IND+LD +K+EAGKL+LE +PFD+ ++++ LF++K++ K +E
Sbjct: 396 IADTVAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLE 455
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFV 1761
L V + D+VP +++GDP R RQ+L NL+ NA+KFT++G+V V
Sbjct: 456 LVVDMADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLV 497
>ref|ZP_00678575.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Pelobacter propionicus DSM 2379]
gb|EAO35790.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Pelobacter propionicus DSM 2379]
Length = 977
Score = 150 bits (378), Expect = 5e-34
Identities = 76/170 (44%), Positives = 111/170 (65%), Gaps = 4/170 (2%)
Frame = -2
Query: 2237 TEDCRKM----EELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQK 2070
TE+ ++M E + A AA+ AKS+FLA SHEIRTPMNGV Q+
Sbjct: 270 TEELQRMVADLEVARDAANAANRAKSEFLANMSHEIRTPMNGVLGMTELLLGTLLNGKQR 329
Query: 2069 DYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCI 1890
+A+T + G AL+ +IND+LD +KIEAGK+ELE +PFD+ L+ D LF+S + +K +
Sbjct: 330 QFAETIRNSGEALLAIINDILDFSKIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGL 389
Query: 1889 ELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
EL V + +VP++V+GDP R RQ++ NL NAVKFT++G + + +AE+
Sbjct: 390 ELLVSIHPDVPRMVVGDPARLRQVVLNLASNAVKFTDQGEIVISADVAES 439
Score = 144 bits (362), Expect = 3e-32
Identities = 121/449 (26%), Positives = 205/449 (45%), Gaps = 16/449 (3%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+S D + + + DTG+GI ++ +++F F QAD S +R YGGTG+GL+I + LA LM
Sbjct: 438 ESGQDNILIRFLVRDTGIGISPESLEKIFEGFAQADGSMTRRYGGTGLGLTIVRQLAGLM 497
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGD-SSRSLTEALPTAFKGMKAILVDGRPVR 1185
GG S P VGS F+F+A D+ +L + A + K ++VD
Sbjct: 498 GGTTRVESTPDVGSCFSFTARF-----DLPATLQQAALPSSAHEALREQKVLVVDDNATN 552
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQL 1008
+ + G+ ++ + + + +N + +IL D P D ++L
Sbjct: 553 RTILEQIILSWGMRIKTASCALEALASL--RNAGQSDPFQLAIL----DMMMPAMDGIEL 606
Query: 1007 LNHLREQKNGQLSDGHKVVLL---VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLK 837
+ +R + + H V+L + E ++ + I + + KP+R+S + + L
Sbjct: 607 AHAIRTDPS--IPPLHMVMLTSSGIIGEMERSQAAGI-EYCLTKPVRSSWLYDCLIGLTG 663
Query: 836 VEI---AERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+ ++RK+ + + + + + L+V+DN VN V L+ G V+ +G +
Sbjct: 664 TALGRTSQRKEQEQVVATGFTTVSDSSALLVEDNLVNQDVGREMLRFLGYEVTVASNGSE 723
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A+ LL RF MD QMP MDG++ T ++R E K A EG T H
Sbjct: 724 ALDLL-ASRRFSIILMDCQMPVMDGYQTTKELRLRE---------KSAPGEGGGTP--HQ 771
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV*CSKYDGPD 306
V+A+TA + E C+++GMD Y++KP+ EQL +SR A
Sbjct: 772 TVIALTAHAGEQDRELCMEAGMDDYLTKPYTLEQLTGILSRWTTSAASVAE--------- 822
Query: 305 FSFINRSEASPSCL--------CPADSIP 243
R++ P L CPA ++P
Sbjct: 823 ----ERADTEPGSLPPLAALTKCPAPTLP 847
>gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 150 bits (378), Expect = 5e-34
Identities = 108/390 (27%), Positives = 199/390 (51%), Gaps = 9/390 (2%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
+ L+ SI+DTG+GI L+ Q+ +F+ F QADSS SR YGGTG+GL+ISK L LMGG+I
Sbjct: 687 INLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGV 746
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GSTF+F+ ++++ K +S + + + + ++VD + +
Sbjct: 747 ESEFGCGSTFSFNVVVRNAEKRAIQNS-----QTFTRSNEKLSVLIVDDNDSSRIILQGI 801
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQLLNHLRE 990
LG ++ ++ +A A + ++F++ WR P D + LRE
Sbjct: 802 AVSLGWQAKIASDAQ---EASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELRE 855
Query: 989 QKNGQLSDGHKVVLLVTS------EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEI 828
+ +S +++++T+ + + Y D + KP+ + + ++++++ ++
Sbjct: 856 LHSSVVS----LIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVFGDL 911
Query: 827 AERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
P L L G ++L+V+DN N VA+ L++ GA + SG++A+ +L+
Sbjct: 912 DLSLPTSPLPHELP--LQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLE 969
Query: 647 -PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
FD MD+QMP MDG++ T +IR++ +++L LP++A+
Sbjct: 970 STAEHFDMVLMDIQMPGMDGYQTTREIRKLP-------RHQL------------LPIIAI 1010
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQL 381
TA + C+ +GM +++KPFD +L
Sbjct: 1011 TAHAMSDDIAACLAAGMQDHIAKPFDLNEL 1040
Score = 147 bits (371), Expect = 3e-33
Identities = 84/206 (40%), Positives = 121/206 (58%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ + K QAE+A+ AKS+FLA SHEIRTPMNGV Q DY + A
Sbjct: 522 ELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSA 581
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
++L+TL+ND+LD +KIEAGKLEL+ PF L L+ D+ +FSS + +K +E+ V +
Sbjct: 582 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTAD 641
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
VP+ ++GD +R +Q+L NLVGNA+KFT++G + + + E N G G
Sbjct: 642 VPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKDTGIGIT 701
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQY 1605
+E N F SGF+ AD S +Y
Sbjct: 702 LEQ-QNALF---SGFQQADSSISRRY 723
Score = 47.0 bits (110), Expect = 0.005
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 4/169 (2%)
Frame = -2
Query: 836 VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS 657
V AE++ QN +F RS ++L+VDDN + + G ++A
Sbjct: 762 VRNAEKRAIQNSQTFTRSN-EKLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASL 820
Query: 656 LLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
L++ HR +D F+D +MP DG ++R++ S+
Sbjct: 821 LVKQAHRDSTRYDVVFVDWRMPGKDGLTFARELRELH----------------SSVVSLI 864
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTD 342
+ + A +++ + + +DG++ KP + + QAV R+V G D
Sbjct: 865 VMITAHGKELLDEQNND-YERYLDGFLIKPVTKNMMLQAVKRVVFGDLD 912
>ref|ZP_01152049.1| PAS [Halorhodospira halophila SL1]
gb|EAR46110.1| PAS [Halorhodospira halophila SL1]
Length = 1266
Score = 150 bits (378), Expect = 5e-34
Identities = 120/395 (30%), Positives = 189/395 (47%), Gaps = 8/395 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D + V L +EDTG+GI + Q +F F QAD+ST+RNYGGTG+GL IS+ L MGG
Sbjct: 675 DPEGVRLHFQVEDTGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGG 734
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSL-TEALPTAFKGMKAILVDGRPVRSA 1179
++ S P G+ F F L I+G +L +LP G ++VD V
Sbjct: 735 ELRLESTPGEGTRFAFELHL-----PIAGTGPWTLDAPSLP----GGHVLVVDDHDVARQ 785
Query: 1178 VTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFI------ESDFWRPETD 1017
+ R +L+ G + ++ A ++A A SR+ ++ I E+D W
Sbjct: 786 ILREYLEAWGYTVTEADSGPAGIEA---ALAAERSRQPFDLMLIDGHLPGEADGWGTARR 842
Query: 1016 VQLLNHLREQKNGQLSDGHKVVLLVTS-EADKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
++ L+ + G L ++LV++ + D G FD + KP+ AST+ +Q
Sbjct: 843 LRTLH-----ERGDLPTTRGPMILVSAYQLDDRSVGDPFDGCLPKPVTASTLFDVVQNTF 897
Query: 839 KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
+ S L +++L+V+DN +N VA L++ GA ++ +G +A+
Sbjct: 898 ---VGAPAATPVTTSGAIPNLSDRSLLLVEDNAINQEVAQRLLEQTGARITLASNGAEAV 954
Query: 659 SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPV 480
+ + FD MD+QMP MDG+EAT +IR+ E N LP+
Sbjct: 955 AWTREA-TFDLILMDLQMPVMDGYEATREIRR-------EHPN--------------LPI 992
Query: 479 LAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQ 375
LA+TA V+ +G+D ++ KP D LYQ
Sbjct: 993 LALTAAVLDNDRAGARDAGLDDHIGKPIDSRLLYQ 1027
Score = 121 bits (304), Expect = 2e-25
Identities = 65/151 (43%), Positives = 90/151 (59%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+ + K AEA + AKS FLA SHEIRTPMN V Q++YA+
Sbjct: 515 LHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLDPVQRNYAEKMHNAS 574
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
R L+ +IND+LD +KIEA +L L+ PFDL LMD + +LF ++ EK +EL + V +
Sbjct: 575 RMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFGDQAGEKGLELFLRVEPTI 634
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHV 1767
P + GD R Q+L+NL+ NA+KFT+ G V
Sbjct: 635 PSSLEGDALRLSQVLSNLLSNAIKFTKHGQV 665
>ref|ZP_00760913.1| COG0642: Signal transduction histidine kinase [Vibrio cholerae MO10]
Length = 1252
Score = 149 bits (377), Expect = 6e-34
Identities = 108/390 (27%), Positives = 198/390 (50%), Gaps = 9/390 (2%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
+ L+ SI+DTG+GI L+ Q+ +F+ F QADSS SR YGGTG+GL+ISK L LMGG+I
Sbjct: 671 INLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGV 730
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GSTF+F+ ++++ K +S + + + + ++VD + +
Sbjct: 731 ESEFGCGSTFSFNVVVRNAEKRAIQNS-----QTFTRSNEKLSVLIVDDNDSSRIILQGI 785
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQLLNHLRE 990
LG ++ ++ +A A + ++F++ WR P D + LRE
Sbjct: 786 AVSLGWQAKIASDAQ---EASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELRE 839
Query: 989 QKNGQLSDGHKVVLLVTS------EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEI 828
+ +S +++++T+ + + Y D + KP+ + + +++ ++ ++
Sbjct: 840 LHSSVVS----LIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKSVVFGDL 895
Query: 827 AERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
P L L G ++L+V+DN N VA+ L++ GA + SG++A+ +L+
Sbjct: 896 DLSLPTSPLPHELP--LQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLE 953
Query: 647 -PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
FD MD+QMP MDG++ T +IR++ +++L LP++A+
Sbjct: 954 STAEHFDMVLMDIQMPGMDGYQTTREIRKLP-------RHQL------------LPIIAI 994
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQL 381
TA + C+ +GM +++KPFD +L
Sbjct: 995 TAHAMSDDIAACLAAGMQDHIAKPFDLNEL 1024
Score = 148 bits (374), Expect = 1e-33
Identities = 85/206 (41%), Positives = 121/206 (58%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ + K QAE+A+ AKS+FLA SHEIRTPMNGV Q DY + A
Sbjct: 506 ELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSA 565
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
++L+TL+ND+LD +KIEAGKLEL+ PF L LM D+ +FSS + +K +E+ V +
Sbjct: 566 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTAD 625
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
VP+ ++GD +R +Q+L NLVGNA+KFT++G + + + E N G G
Sbjct: 626 VPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKDTGIGIT 685
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQY 1605
+E N F SGF+ AD S +Y
Sbjct: 686 LEQ-QNALF---SGFQQADSSISRRY 707
Score = 44.7 bits (104), Expect = 0.027
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Frame = -2
Query: 836 VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS 657
V AE++ QN +F RS ++L+VDDN + + G ++A
Sbjct: 746 VRNAEKRAIQNSQTFTRSN-EKLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASL 804
Query: 656 LLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
L++ HR +D F+D +MP DG ++R++ S+
Sbjct: 805 LVKQAHRDSTRYDVVFVDWRMPGKDGLTFARELRELH----------------SSVVSLI 848
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTD 342
+ + A +++ + + +DG++ KP + + QAV +V G D
Sbjct: 849 VMITAHGKELLDEQNND-YERYLDGFLIKPVTKNMMLQAVKSVVFGDLD 896
>gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 149 bits (377), Expect = 6e-34
Identities = 108/390 (27%), Positives = 198/390 (50%), Gaps = 9/390 (2%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
+ L+ SI+DTG+GI L+ Q+ +F+ F QADSS SR YGGTG+GL+ISK L LMGG+I
Sbjct: 687 INLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGV 746
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GSTF+F+ ++++ K +S + + + + ++VD + +
Sbjct: 747 ESEFGCGSTFSFNVVVRNAEKRAIQNS-----QTFTRSNEKLSVLIVDDNDSSRIILQGI 801
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWR-PETD-VQLLNHLRE 990
LG ++ ++ +A A + ++F++ WR P D + LRE
Sbjct: 802 AVSLGWQAKIASDAQ---EASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELRE 855
Query: 989 QKNGQLSDGHKVVLLVTS------EADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEI 828
+ +S +++++T+ + + Y D + KP+ + + +++ ++ ++
Sbjct: 856 LHSSVVS----LIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKSVVFGDL 911
Query: 827 AERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
P L L G ++L+V+DN N VA+ L++ GA + SG++A+ +L+
Sbjct: 912 DLSLPTSPLPHELP--LQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLE 969
Query: 647 -PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
FD MD+QMP MDG++ T +IR++ +++L LP++A+
Sbjct: 970 STAEHFDMVLMDIQMPGMDGYQTTREIRKLP-------RHQL------------LPIIAI 1010
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQL 381
TA + C+ +GM +++KPFD +L
Sbjct: 1011 TAHAMSDDIAACLAAGMQDHIAKPFDLNEL 1040
Score = 148 bits (374), Expect = 1e-33
Identities = 85/206 (41%), Positives = 121/206 (58%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ + K QAE+A+ AKS+FLA SHEIRTPMNGV Q DY + A
Sbjct: 522 ELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSA 581
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
++L+TL+ND+LD +KIEAGKLEL+ PF L LM D+ +FSS + +K +E+ V +
Sbjct: 582 AKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTAD 641
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
VP+ ++GD +R +Q+L NLVGNA+KFT++G + + + E N G G
Sbjct: 642 VPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSLPEGEINLSFSIKDTGIGIT 701
Query: 1682 VESTANGAFNTLSGFEAADRRNSWQY 1605
+E N F SGF+ AD S +Y
Sbjct: 702 LEQ-QNALF---SGFQQADSSISRRY 723
Score = 44.7 bits (104), Expect = 0.027
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Frame = -2
Query: 836 VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS 657
V AE++ QN +F RS ++L+VDDN + + G ++A
Sbjct: 762 VRNAEKRAIQNSQTFTRSN-EKLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASL 820
Query: 656 LLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
L++ HR +D F+D +MP DG ++R++ S+
Sbjct: 821 LVKQAHRDSTRYDVVFVDWRMPGKDGLTFARELRELH----------------SSVVSLI 864
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTD 342
+ + A +++ + + +DG++ KP + + QAV +V G D
Sbjct: 865 VMITAHGKELLDEQNND-YERYLDGFLIKPVTKNMMLQAVKSVVFGDLD 912
>ref|ZP_00528277.1| PAS [Chlorobium phaeobacteroides DSM 266]
gb|EAM35553.1| PAS [Chlorobium phaeobacteroides DSM 266]
Length = 1006
Score = 149 bits (377), Expect = 6e-34
Identities = 121/402 (30%), Positives = 190/402 (47%), Gaps = 13/402 (3%)
Frame = -2
Query: 1547 SNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAE 1368
+ + +VT+ + + DTG+GIP + VF PF+QAD ST R YGGTG+GL+IS LA+
Sbjct: 491 AQEERDSQVTIRLLVRDTGIGIPREMMKAVFEPFIQADGSTRRKYGGTGLGLAISNQLAK 550
Query: 1367 LMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGM--KAILVDGR 1194
MG I S GS F F L+ + +E LP + G+ K +LV
Sbjct: 551 KMGSTIILESTNGEGSVFWFDVVLEKQCQS---------SELLPESGAGLAGKRVLVVN- 600
Query: 1193 PVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE-TD 1017
R+A R+ LK V+ + + F G A + +S+ W D
Sbjct: 601 --RNASMRFMLK------GVLESCSVDCTVFGGIEEALAAVTSSSVHLESVPVWNVAILD 652
Query: 1016 VQLLNHLREQKN---GQLSDGHKV-VLLVTSEADKDKYGSIFDI----VMCKPIRASTIA 861
+ H E+ G +++ H+ ++L+ S ++ +F ++ KP+R + +
Sbjct: 653 TNVAEHSLEEFQRLIGTITEVHRCPIILLVSFGQYEEMKKLFSTGVFRLLLKPVRQAEVV 712
Query: 860 SSIQQLLKVEIAERKD--NQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVS 687
++ L E AE ++ Q + S +IL+V+D+ VN +VA A L+K G +
Sbjct: 713 VAVVDALNNESAEYQEPVKQVGAGWQDSETETYHILLVEDSPVNQQVAVAMLRKIGYSPD 772
Query: 686 CVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
V SGK AI ++ +D MD QMPEMDG+EAT IR + +
Sbjct: 773 VVASGKAAIDAMR-CKVYDLVLMDCQMPEMDGYEATRIIR----------------TDRT 815
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
+PV+AMTA + E+C+ +GMD Y+ KP + L
Sbjct: 816 LCGTPDIPVVAMTAHAMIGDREKCLSAGMDDYLPKPVCKSDL 857
Score = 131 bits (329), Expect = 2e-28
Identities = 69/161 (42%), Positives = 98/161 (60%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
K+ E + +E+ A A+ AKSQFLA SHE+RTPMNGV Q+ Y
Sbjct: 327 KLEESVIRTQEMARAASKANEAKSQFLANMSHEVRTPMNGVIGMSDLLLDTSLDPEQRKY 386
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+T G+ L+++IND+LD +KIEA +L+L+ V FDL L++DV + ++++K +EL
Sbjct: 387 VETIISSGKNLLSIINDILDFSKIEANRLDLDVVDFDLLELLEDVCGILGLQAQQKGLEL 446
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFV 1761
+ +P+ + GD R RQIL NLVGNAVKFT G V V
Sbjct: 447 TLVTGSFLPRFLRGDQARIRQILVNLVGNAVKFTHSGEVVV 487
>ref|YP_432114.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
Length = 1437
Score = 149 bits (377), Expect = 6e-34
Identities = 118/396 (29%), Positives = 191/396 (48%), Gaps = 11/396 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+ DR+ L+ S+ DTG+GI + R+F F QA++ST+R +GG G+GL+I + L LMGG
Sbjct: 934 EEDRLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGG 993
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+I+ S GS F FS + + + SL K ++ ++VD V
Sbjct: 994 EIAAESEEGEGSVFRFSIACVRAQAWSAAKKACSLP-------KTLRVLVVDDNASAREV 1046
Query: 1175 TRYHLKRLGILLQV-VNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNH 999
+ ++ G + + VN V + AA + +++ I D+ P LN
Sbjct: 1047 LKGIIESFGWVADIAVNGEEGVARVLE----AAEASSPHNLVLI--DWGMPG-----LNG 1095
Query: 998 LR--EQKNGQLSDGHKVVLLVTSEADKDKY-------GSIFDIVMCKPIRASTIASSIQQ 846
R E Q +G ++++ S +D+ SI D + KP+ AS + + +
Sbjct: 1096 WRAAELIKAQYPEGRAPLIMMVSAQTRDEMERRRLASPSIIDAYLTKPVTASMVLEAASE 1155
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L + R + N + + + L G +IL+V+DN N +VA L+ GA V G +
Sbjct: 1156 TL-AQDCSRGNTDN--AAIGARLHGMSILLVEDNPTNQQVAMELLQSEGAGVQIAADGLE 1212
Query: 665 AISLLQPPH-RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A++ +Q FDA MD+QMP MDG+ AT +IR +LK N
Sbjct: 1213 AVAAIQSAEVMFDAVLMDIQMPGMDGYAATREIRG-KLKMNA------------------ 1253
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
LP++AMTA+ + + E + GM+ +V KPFD + L
Sbjct: 1254 LPIIAMTANAMFSDREAALAVGMNDHVGKPFDFDHL 1289
Score = 117 bits (294), Expect = 2e-24
Identities = 65/159 (40%), Positives = 92/159 (57%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+++ E K A+ A AKS+FLA SHEIRTPMN + Q+DY A+
Sbjct: 772 QRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRTNLEERQQDYVHKAES 831
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
RAL+ ++ND+LD +KIEAGKL L+ P L L+ DV + ++ +K +E+ +
Sbjct: 832 SARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITANLGDKPLEVLFDIDP 891
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+P + D R +QIL NL GNAVKFTE+G V + V L
Sbjct: 892 KIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRL 930
>dbj|BAE64646.1| unnamed protein product [Aspergillus oryzae]
Length = 1079
Score = 149 bits (377), Expect = 6e-34
Identities = 173/743 (23%), Positives = 290/743 (39%), Gaps = 65/743 (8%)
Frame = -2
Query: 2396 DFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYD-KVTEDCRK 2220
D DP + R +++ +T TF + +A Y+R + +V E ++
Sbjct: 444 DRRDPRSSFHIPSRVKERRSCVTDELTELTSTF---NEMSDELAIQYNRLEERVVERTKE 500
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+++ K AEAA+ +K+ F+A SHE++TP+NG+ K Q G
Sbjct: 501 LQKAKLAAEAANESKTLFIANISHELKTPLNGILGMCAVCMGEEDLHRIKKSLQVVYKSG 560
Query: 2039 RALITLINDVL--DRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF--- 1875
L+ L+ND+L R +IE + LE F L + + +F ++ EK I+ +V
Sbjct: 561 DLLLHLLNDLLTFSRNQIEQA-IHLEEKEFRLSDIRSQLSIIFQNQVHEKHIDFSVNYVG 619
Query: 1874 VCDNVPK---------------------------VVIGDPWRFRQILTNLVGNAVKFT-E 1779
+ ++ P+ V+ GD R Q+L NLVGN++KF E
Sbjct: 620 IGNSQPRGTMCQERGVERTHPAVGPPQTGRLKDMVLWGDQHRILQVLINLVGNSLKFIPE 679
Query: 1778 RGHVFVRV-CLAENSNMEANQVL-HGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQY 1605
G V VR+ C+ E + E++ L G+ R + + + G D + Q
Sbjct: 680 NGKVEVRIRCVEEVPDAESSVTLVQGSQPSSQARSRTPSRLTATPVDGTNLLDSQLEKQ- 738
Query: 1604 FXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSST 1425
SD + +ED G GIP Q RVF PF+Q D
Sbjct: 739 ------------------TPVPSDLRTLIFQFEVEDNGPGIPANMQRRVFDPFVQGDLGL 780
Query: 1424 SRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTE 1245
+R YGGTG+GLSI L+ LMGG I S G+ FT LK + + S S+
Sbjct: 781 NRKYGGTGLGLSICAQLSRLMGGVILLDSEEGNGALFTLKIPLKFVKEAAASTRSSSIA- 839
Query: 1244 ALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREK 1065
G S V+ + L+ +N + P + + G++E
Sbjct: 840 ---------------GSRTPSVVS--------LSLEEFSN----IAQTPSNHSSVGNKET 872
Query: 1064 ASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCK 885
+ + F +P+ +L+ + +
Sbjct: 873 -----LTNGFEKPDVQPRLVG------------------------------------LSQ 891
Query: 884 PIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKK 705
P A T+ S+ K + + + + N +R +L+ +DNK+N VA ++
Sbjct: 892 PFFAPTVPSAPSSPSKGQESNQSSSDNGSKKIR-------VLMAEDNKINQEVALRYVQN 944
Query: 704 YGAN------------------VSCVESGKDAISL----LQPPHRFDACFMDVQ------ 609
N V+ V+ G++A ++ FD FMD+Q
Sbjct: 945 AYKNTLSSADLDRMLALEEVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQVKHLLH 1004
Query: 608 -MPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECI 432
MP +DG ++T IR+M Y P++A++A + ++C+
Sbjct: 1005 HMPILDGLQSTRLIREM---------------------GYSAPIVALSAFSEDSNIKDCM 1043
Query: 431 KSGMDGYVSKPFDEEQLYQAVSR 363
SGMD ++SKP L Q +++
Sbjct: 1044 DSGMDMFISKPIRRPILKQVLNK 1066
>ref|ZP_00586343.1| PAS [Shewanella amazonensis SB2B]
gb|EAN39325.1| PAS [Shewanella amazonensis SB2B]
Length = 1287
Score = 148 bits (374), Expect = 1e-33
Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 12/402 (2%)
Frame = -2
Query: 1550 NSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLA 1371
+++ D L I I+D+G+G+ + Q +F F QADSS SR YGGTG+GL+I++ L
Sbjct: 678 DADLGDDGTCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELV 737
Query: 1370 ELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTA-FKGMKAILVDGR 1194
LM G+I TS P VGSTFT L T+ P A F G++ +LV+
Sbjct: 738 HLMQGEIRVTSSPGVGSTFTIDVQL-----------GFDATKYRPGARFSGVRVLLVEDN 786
Query: 1193 PVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD- 1017
V L+ LG + +NN +K + + +L +D+ P D
Sbjct: 787 HTSRLVFSELLRDLGCEVTALNNGLTAMKTIERM-----APDSFDVLL--ADWQLPGLDG 839
Query: 1016 VQLLNHLREQKNGQLSDGHKVVLLVTS------EADKDKYGSIFDIVMCKPIRASTIASS 855
++L + +R + G +++VT+ EA FD + KP+ ++
Sbjct: 840 LELASWIRHLDSLSRQPG---IIIVTAFSQAMLEAQLKHREEEFDATLIKPVTREMVSRC 896
Query: 854 IQQLLKVEIAERKDNQNRPSF----LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVS 687
+Q +L ER +N L LVG+ +L+V+DN N VA + L + GA V
Sbjct: 897 LQSVL-----ERHNNDGLDMLSHLPLAPSLVGRRLLLVEDNATNRLVATSLLGQLGAEVI 951
Query: 686 CVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
G A+ LL +FD MD+QMP MDG++ T +IR EL +
Sbjct: 952 EAVDGFQALKLLS-RQQFDLVLMDIQMPGMDGYQTTRKIRN-ELMLTD------------ 997
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
LP++AMTA+ + + C +GM+ ++SKPF+ +++
Sbjct: 998 ------LPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEV 1033
Score = 131 bits (329), Expect = 2e-28
Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 3/180 (1%)
Frame = -2
Query: 2285 LLGYSIAAAYSRYDKVTEDCRKMEEL---KTQAEAADVAKSQFLATASHEIRTPMNGVXX 2115
++GY + AY +TE ++ +EL + QA A AKS FLA SHEIRTPMN V
Sbjct: 503 IMGY-LGIAYD----LTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLG 557
Query: 2114 XXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMD 1935
+DY + Q ++L+ L+ND+LD +KIEAG++ELE F L+ L+
Sbjct: 558 LLQMTLQTELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLG 617
Query: 1934 DVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
D+ S+ SS+ ++K IEL V +VP +IGD R RQIL N++ NA+KFTE+G + R+
Sbjct: 618 DMGSILSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRI 677
>ref|ZP_00639374.1| PAS [Shewanella frigidimarina NCIMB 400]
gb|EAN73894.1| PAS [Shewanella frigidimarina NCIMB 400]
Length = 1236
Score = 148 bits (374), Expect = 1e-33
Identities = 154/630 (24%), Positives = 259/630 (41%), Gaps = 11/630 (1%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K AE A++ KS+FLA SHEIRTPMN + Q+DY
Sbjct: 710 EAKQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTVQQQDY---------- 759
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L++A A L LR +++D++ ++ + +E F D V
Sbjct: 760 --------LNKAGFSAQSL--------LR-IINDILDFSKIEAGKLELERVAFPLDKVLD 802
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVES 1674
VI NA+K E+G V L + + A +L+G G + +
Sbjct: 803 HVIDI-------------NAIKAQEKG-----VELLLYAPVTAGLILYGDPLRLGQVIVN 844
Query: 1673 TANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDT 1494
+ A E E+ + D DR+T+ + DT
Sbjct: 845 LLSNAVKFTQTGEVE----------------------LGCEDVGERD-DRITMKFWVRDT 881
Query: 1493 GVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTF 1314
G+GI Q +F F QAD ST+R YGGTG+GLSISK L +MGG + S GS F
Sbjct: 882 GIGISKDQQAMLFDAFSQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIF 941
Query: 1313 TFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQV 1134
+F+ + + + + + +P + ++VD P L I +
Sbjct: 942 SFTISFEIAEEQVIAPL------VVPEQLNNLTTLVVDDNP----------SALQIYSTL 985
Query: 1133 VNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQLSDGHK 957
+ + + V A K + + D+ PE + ++ + E
Sbjct: 986 MTDFSFGVNTADSGQKALDILRKKPVDLLLLDWMMPEMNGCDVIKAIDEMVADGSIAKRP 1045
Query: 956 VVLLVTSEA----DKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDN------Q 807
+++L+T+ A D + + V+ KP +AS + +++ E K N +
Sbjct: 1046 IIILMTAYAAEPLDHELQKNSVYAVLQKPFKASAL---FDEIINAFAKEPKLNAMPVIIE 1102
Query: 806 NRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDA 627
P+ L +L+V+DN +N +VA+ LK G V ++G+ A+ ++ FDA
Sbjct: 1103 AEPAKASGL-----VLLVEDNFINQQVASELLKSAGYEVVIADNGQVALDVID-SKPFDA 1156
Query: 626 CFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQAT 447
MD+QMP MDG AT ++R+ K +P++AMTA +
Sbjct: 1157 VLMDIQMPVMDGLTATAELRKRYSK-------------------QQMPIIAMTAHAMSGD 1197
Query: 446 YEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
E+ + +GM+ +++KP +L++ +S +
Sbjct: 1198 KEKSLAAGMNAHITKPIVLTELFETLSHWI 1227
>ref|ZP_01023574.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Polaromonas naphthalenivorans
CJ2]
gb|EAQ17932.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Hpt [Polaromonas naphthalenivorans
CJ2]
Length = 1130
Score = 148 bits (374), Expect = 1e-33
Identities = 112/391 (28%), Positives = 183/391 (46%), Gaps = 10/391 (2%)
Frame = -2
Query: 1505 IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSV 1326
I+D+G+GI Q +F F+Q D+ST+R YGGTG+GL+I + L LMGGQI S P
Sbjct: 631 IKDSGIGIEPDRQAALFQSFVQVDASTTRKYGGTGLGLAICQRLVRLMGGQIGLESAPGD 690
Query: 1325 GSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGI 1146
GSTF F+A L H+ L+ + G + ++D + + L+R G
Sbjct: 691 GSTFWFTARLGHA----DAPEVAMLSALHLVSLAGKRVAVLDDTQLNLRILDKQLRRWG- 745
Query: 1145 LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKNGQLS 969
+ V+ A A+ N + + SD PE D + LRE+ +
Sbjct: 746 MQPVLFERAAEALAWLAGN---------PVDVVISDMHMPEMDGLSFARLLRER-----T 791
Query: 968 DGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSFL 789
+VLL + + +FD + KP R S + S+ ++ + +K ++ P+
Sbjct: 792 PATPIVLLTSGTMPSGEQARVFDARLLKPYRQSQLFESLARVTSAPVEVQKVARSEPAAA 851
Query: 788 RSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI---------SLLQPPHR 636
R+ + ILV DDN +NL+VA A L K G + +G +A+ L + P +
Sbjct: 852 RN----QFILVADDNAINLKVALAMLAKLGYEAATAVNGSEAVDRVAASLRTGLGETPRQ 907
Query: 635 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 456
+ A MD MP MDGF + I ST P++A+TA V+
Sbjct: 908 YAAILMDANMPVMDGFVVSRLII-------------------STHGTQAPPIIALTASVL 948
Query: 455 QATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ + C+++GM G++ KP ++L ++++R
Sbjct: 949 EEDRQRCLQAGMVGFLPKPLRIDELSESLAR 979
Score = 127 bits (318), Expect = 4e-27
Identities = 76/190 (40%), Positives = 106/190 (55%)
Frame = -2
Query: 2246 DKVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKD 2067
D+V ++ + +A A AK+ FLA SHEIRTP+NGV Q+D
Sbjct: 450 DRVASRTAELNASRDEALGAARAKAAFLAAMSHEIRTPLNGVVGMTTLLADTPLDLEQRD 509
Query: 2066 YAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIE 1887
Y T ++ L+ +IND+LD +KIE+GKLELE P +L + +++ + + ++REK +E
Sbjct: 510 YVHTMRISSDQLLGVINDILDFSKIESGKLELENEPLNLLATIEEACDIGAPRAREKGLE 569
Query: 1886 LAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHG 1707
L V + D +P V GD R RQIL NLV NAVKFTE+G V V + VL
Sbjct: 570 LLVDLGDELPGWVRGDVTRLRQILLNLVNNAVKFTEKGQVVV-----------SAHVLED 618
Query: 1706 AMNGKGGRVE 1677
G+GG VE
Sbjct: 619 FSPGRGGLVE 628
Score = 46.2 bits (108), Expect = 0.009
Identities = 33/140 (23%), Positives = 65/140 (46%)
Frame = -2
Query: 779 LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPE 600
L GK + V+DD ++NLR+ L+++G E +A++ L + D D+ MPE
Sbjct: 719 LAGKRVAVLDDTQLNLRILDKQLRRWGMQPVLFERAAEALAWLAG-NPVDVVISDMHMPE 777
Query: 599 MDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGM 420
MDG +R+ T A P++ +T+ + + + +
Sbjct: 778 MDGLSFARLLRER------------------TPAT---PIVLLTSGTMPSGEQARV---F 813
Query: 419 DGYVSKPFDEEQLYQAVSRL 360
D + KP+ + QL+++++R+
Sbjct: 814 DARLLKPYRQSQLFESLARV 833
>ref|XP_387294.1| hypothetical protein FG07118.1 [Gibberella zeae PH-1]
gb|EAA76930.1| hypothetical protein FG07118.1 [Gibberella zeae PH-1]
Length = 796
Score = 148 bits (374), Expect = 1e-33
Identities = 160/633 (25%), Positives = 265/633 (41%), Gaps = 11/633 (1%)
Frame = -2
Query: 2234 EDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQT 2055
+ ++ + + AE A+ KS+FLA SHEIRTPMNG+ Q++
Sbjct: 198 DSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQRE---- 253
Query: 2054 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF 1875
++ ++N++ + L +++DD++ L ++R IE
Sbjct: 254 -------MLNIVNNLAN----------------SLLTIIDDILDLSKIEARRMVIE---- 286
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM------EANQVL 1713
+P + G + + L AVK E+ F+ + +S++ ++ ++
Sbjct: 287 ---EIPYTLRGTVFNALKTL------AVKANEK---FLDLTYMVDSSVPDYVIGDSFRLR 334
Query: 1712 HGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSD 1533
+N G ++ T +G + E+ QS
Sbjct: 335 QIILNLVGNAIKFTEHGEVSL-----------------------------TIKESMGQSH 365
Query: 1532 SDRVTLAIS--IEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMG 1359
A+ ++DTG+GI D +F F QAD S +R +GGTG+GLSISK L LMG
Sbjct: 366 VRPGEYAVEFVVQDTGIGIAQDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMG 425
Query: 1358 GQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSA 1179
G + S GS F F+ +K + D + L E ++G + + VD ++A
Sbjct: 426 GDLWVNSQHGKGSEFHFTCLVKLAPDDAA------LIEQQIRPYRGHQVLFVDKAQSQNA 479
Query: 1178 VT-RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLN 1002
+ + L+++G+ VV++ + A + GS +IL D R V
Sbjct: 480 ASIKPMLEKIGLKPVVVDSEKSPALA---RLHTGGSLPYDAILVDSIDTARRLRAVDDFK 536
Query: 1001 HLREQKNGQLSDGHKVVLL--VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEI 828
+L +VLL V + K M P + + + + L
Sbjct: 537 YL------------PIVLLAPVVHVSLKSCLDLGITSYMTTPCKLIDLGNGMIPAL---- 580
Query: 827 AERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
+N+ PS L IL+ +DN VN R+A L+KY V+ V +G +A+ +Q
Sbjct: 581 ----ENRATPS-LADNTKSFEILLAEDNTVNQRLAVKILEKYHHVVTVVGNGWEAVKAVQ 635
Query: 647 PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMT 468
+FD MDVQMP M GFEATG+IR+ E R P++A+T
Sbjct: 636 SK-KFDVILMDVQMPIMGGFEATGKIREYERGIGSHR----------------TPIIALT 678
Query: 467 ADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
A + E+CI++ MD Y+SKP + L Q +
Sbjct: 679 AHAMMGDREKCIQAQMDEYLSKPLQQNHLIQTI 711
>ref|ZP_00520847.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Two component regulator propeller
[Solibacter usitatus Ellin6076]
gb|EAM60259.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal:Two component regulator propeller
[Solibacter usitatus Ellin6076]
Length = 1349
Score = 148 bits (373), Expect = 2e-33
Identities = 122/410 (29%), Positives = 191/410 (46%), Gaps = 17/410 (4%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D R + ++I DTG GIP + +F F Q D ST+R YGGTG+GL+ISK L LMGG
Sbjct: 930 DEARAVMRVAIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGG 989
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
++ +S GSTF+F+ L D++ + +G++A++VD + V
Sbjct: 990 SMAVSSRLGEGSTFSFTLPLPL-------DANSPVEPLTAAGLRGLRALIVDDNEINRRV 1042
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNH 999
+ G+ + A + AAG +IL D+ P D V++
Sbjct: 1043 LHEQIIGWGMRNGSFAAGEEALVALRAAH-AAGDPYHFAIL----DYRMPGMDGVEVARA 1097
Query: 998 LREQKNGQLSDGHKVVLLVTSEAD----KDKYGSIFDIVMCKPIRASTIASSIQQL---- 843
++ + VV+L+TS + K I D + KP+R S + + +
Sbjct: 1098 IKADDELR----ETVVVLLTSVGQWSEARQKESGIVDASLVKPVRQSQLLNILSSCWVRT 1153
Query: 842 --LKVEIAERKD---NQNRPSF-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCV 681
+ A R + N+ R + LR V +LV +DN VN +V+A L K G
Sbjct: 1154 NSITAAPAVRPEPPVNEMRAALALRFGGVPVRVLVAEDNVVNQKVSARMLDKLGIRADVA 1213
Query: 680 ESGKDAISL--LQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
G++A++L L P +D FMD QMPEMDG+ AT +IR+ E
Sbjct: 1214 ADGREAVALFGLVP---YDLIFMDCQMPEMDGYAATREIRRREGPGRR------------ 1258
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+P+ AMTA+V+ E C+ +GMD ++ KP E L++ + R +
Sbjct: 1259 ------VPIAAMTAEVLGGCRELCLAAGMDDHIPKPVKMEVLFETLRRWI 1302
Score = 140 bits (353), Expect = 4e-31
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 4/198 (2%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
++ K QAEAA K++FLA SHEIRTPMNGV Q+DYA T +
Sbjct: 769 ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTTEQRDYAGTVRRS 828
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G +L+TLIND+LD +K+EAGKL +EA FDLRS +++V + + K + ++L +
Sbjct: 829 GESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVG 888
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
P+ +GD R RQ++TNLVGNA+KFT G + + V S EA V+ A++ G
Sbjct: 889 APRHFVGDAGRIRQVVTNLVGNAIKFTGEGSIVIEVVC--ESQDEARAVMRVAIHDTGPG 946
Query: 1682 VESTANGA----FNTLSG 1641
+ S G+ F+ L G
Sbjct: 947 IPSEKIGSLFEKFSQLDG 964
>ref|ZP_00317250.1| COG0642: Signal transduction histidine kinase [Microbulbifer
degradans 2-40]
Length = 942
Score = 148 bits (373), Expect = 2e-33
Identities = 113/409 (27%), Positives = 192/409 (46%), Gaps = 11/409 (2%)
Frame = -2
Query: 1556 GENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKC 1377
G + +QS ++ TL + D+G+G+ Q+R+F PF Q DSS SR +GGTG+GL+I+K
Sbjct: 411 GVSKDQSSENQFTLKFRVTDSGIGLSQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKG 470
Query: 1376 LAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDG 1197
L + M G I S G+TF F++TL S S+ + L +G+ A++ D
Sbjct: 471 LVDRMNGTIGVESTLGKGATFWFTSTLGRS------PSASAKQTYLAGTLRGVHALVFDH 524
Query: 1196 RPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD 1017
+ ++L G + M + Q + E I I+S D
Sbjct: 525 SNMGRMEITHYLTGWGAKVCETGEMEDIEP----QISFFSNSEPVDIAIIDSMI-----D 575
Query: 1016 VQLLNHLREQKN-GQLSDGHKVVLLVTSEADKDKY-----GSIFDIVMCKPIRASTIASS 855
++ + LR ++ QL+ + +++ + + + + + +P+ + + +
Sbjct: 576 IKTFDRLRICEHVTQLNHRFNIPVIILAPSSIQRILEPHLAGTNSLFINRPLFCNKLHQT 635
Query: 854 IQQLLKVEIAERKDN-----QNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANV 690
I + L++ E ++ Q+ P + + NIL VDDN NL++ LK NV
Sbjct: 636 ICEQLEIVATENIESRTYLHQHEPLEQQQV----NILAVDDNPANLKLVTELLKGLNINV 691
Query: 689 SCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
+ VESG+ AI+ ++ H FD MD+QMP MDG E TG IR++E
Sbjct: 692 TPVESGEQAIAQIKDSH-FDLILMDIQMPSMDGIETTGHIRELE---------------- 734
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
T+ P++A+TA + + +GMD +SKP E +L + R
Sbjct: 735 --TSGPRTPIIALTAHAVSEQKSRLLLAGMDDCLSKPVSESELRHVIER 781
Score = 118 bits (296), Expect = 1e-24
Identities = 59/162 (36%), Positives = 96/162 (59%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
+++ + A A KS+FLA SHEIRTP+NG+ Q DY T +
Sbjct: 257 ELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTELNNQQVDYLTTIEES 316
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
+ L+T+IND+LD +++E G L LE P +R L++D + L + + EK I + + +
Sbjct: 317 AKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTIIDHD 376
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENS 1737
VP+ ++GDP R +Q+L+NLV NA+KFT+ G++ + V ++S
Sbjct: 377 VPENLLGDPLRLKQVLSNLVSNAIKFTDVGYILLGVSKDQSS 418
>ref|ZP_00850586.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Shewanella sp. ANA-3]
gb|EAP20014.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Shewanella sp. ANA-3]
Length = 935
Score = 148 bits (373), Expect = 2e-33
Identities = 167/648 (25%), Positives = 264/648 (40%), Gaps = 18/648 (2%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 267 DQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQL 326
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
+Q DY T +E +L ++++D++
Sbjct: 327 VKTPLHSSQVDYINT---------------------------IERSATNLLAIINDILD- 358
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
FS +E V +N+P G + +T + G+A V + + +N
Sbjct: 359 FSK------LEAGKMVLENMP---FGLRETLGETITLISGSAQAKGLELVVDIAPNVPDN 409
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
N +A +V N G ++ T +G+
Sbjct: 410 VNGDAMRVCQIINNLVGNAIKFTDSGSVLVKL---------------------------- 441
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
E NQ+D D+V L + DTG+GI QD +F F QADSS SR +GGTG+GL I+K
Sbjct: 442 --ELQNQTD-DQVVLRCDVIDTGIGIDENQQDFLFQAFGQADSSISRRFGGTGLGLVITK 498
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALP-TAFKGMKAILV 1203
L MGGQI FTS GS F F+ L G + ++LP K +
Sbjct: 499 RLVNQMGGQIGFTSSVDKGSNFWFTLPL--------GLGQFQIGDSLPFEKLKDKTVLFY 550
Query: 1202 DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE 1023
+ R + +V LK+ + ++ +++ + + +L F P
Sbjct: 551 EPRVLTHSVISRQLKQWDTKVTHHQHIPSLLTTL-----STTEHQFDYVLLSCHGFSNPN 605
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIF-----DIVMCKPIRASTIA- 861
V LN + + + L+V + + + S F D+V+ P+ +A
Sbjct: 606 QLVSTLNQAKSKTD---------CLIVLFDCQEQEVLSQFIRPNADVVLSLPVSEHQLAR 656
Query: 860 SSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCV 681
+ + ++ +I P+ +SL +L VDDN NL++ L + V V
Sbjct: 657 NMLYPPMEYDILP-PVAITVPAARQSL----TVLAVDDNFANLKLIDTLLNELVTTVIAV 711
Query: 680 ESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
SG++A+ + FD FMD+QMP DG AT QIRQ + N
Sbjct: 712 NSGEEAVKQAK-SRTFDLIFMDIQMPGTDGISATKQIRQGSMNRN--------------- 755
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
P++A+TA I E + SGMDGY+ KP DE L ++R +
Sbjct: 756 ----TPIIAVTAHAIAEERELILGSGMDGYLPKPIDEAALKAEINRWI 799
>ref|ZP_00316318.1| COG0642: Signal transduction histidine kinase [Microbulbifer
degradans 2-40]
Length = 765
Score = 147 bits (372), Expect = 2e-33
Identities = 119/401 (29%), Positives = 188/401 (46%), Gaps = 8/401 (1%)
Frame = -2
Query: 1544 NQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
N SD+D + S+ED+G+GI Q+++F F QAD ST+R +GGTG+GL+I K LAE+
Sbjct: 397 NASDADLPMIHFSVEDSGIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEM 456
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVR 1185
MGG+I S GSTF FSA H K ++ E P + G K ++V+ +
Sbjct: 457 MGGEIGVYSREKAGSTFWFSAVFTHVEK--------AINEQPPQSLAGKKLLVVNQSKIV 508
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLL 1005
V H I ++V++ ++ GQ+ DF D+Q +
Sbjct: 509 EKVIASHAADWNIACRIVHSGEKALEVISGQH--------------HYDFIILSQDLQDM 554
Query: 1004 NHL--REQKNGQLSDGHKVVLLVT----SEADKDKYGSIFDIVMCKPIRASTIASSIQ-Q 846
L ++ + + LVT S+ +D+ +I ++ P+ I + +Q +
Sbjct: 555 PGLDVADKVRTLAAYSSTPIFLVTKVRKSQLPEDRLHTI-TALLPYPLSIHKIENLLQTK 613
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+ E+K N + L ++LV +DN VN V L K+ E G
Sbjct: 614 PTHTVVEEQKTNTQATTVSEGPL---HVLVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQ 670
Query: 665 AI-SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYH 489
A+ ++ + P +D MD +MPEMDGFEAT IR E N+ +TT
Sbjct: 671 ALNAVTESPTPYDLIIMDCEMPEMDGFEATRSIRTWESNNNQP----------ATT---- 716
Query: 488 LPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
++A+TA V + SGM+ Y+SKP E+L +A++
Sbjct: 717 --IIALTAHVEAEHRQRVFDSGMNYYLSKPVTMEKLSEALT 755
Score = 146 bits (369), Expect = 5e-33
Identities = 77/187 (41%), Positives = 114/187 (60%)
Frame = -2
Query: 2234 EDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQT 2055
E+ + L +AEAA+ AKSQF+AT SHEIRTPMNGV +Q+ Y
Sbjct: 234 EEKIETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLDDSQRHYLGI 293
Query: 2054 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF 1875
+ G +L+ +IND+LD +KIEAGK+ LE + FDL L++D V +FS+ + ++ IEL
Sbjct: 294 IERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICS 353
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNG 1695
+ N PK ++GDP R +Q+L NL+GNA KFT GH++V S+ + ++H ++
Sbjct: 354 ISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEARQVNASDADL-PMIHFSVED 412
Query: 1694 KGGRVES 1674
G +ES
Sbjct: 413 SGIGIES 419
>gb|AAZ47484.1| PAS [Dechloromonas aromatica RCB]
ref|YP_285954.1| PAS [Dechloromonas aromatica RCB]
Length = 1275
Score = 147 bits (372), Expect = 2e-33
Identities = 115/401 (28%), Positives = 192/401 (47%), Gaps = 13/401 (3%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ S+ V + +EDTG+G+ + R+F F Q DS+T+R YGGTG+GL+I++ LA+LM
Sbjct: 903 EESSNDVLIRFEVEDTGIGVAPENLPRLFQVFEQGDSTTTRRYGGTGLGLAITRRLAQLM 962
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG+ S VGSTF +A L + + R +L +G +A+++D PV
Sbjct: 963 GGEAGVESTLGVGSTFWLTARLGR----VRAATGRHRIPSL----RGKRALVIDDMPVTR 1014
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLL 1005
V L+ +G+ A A Q A RE + D P D + L
Sbjct: 1015 LVQSQLLRMIGL-----EGEGAAGGAVALQEIEAAEREGKPYDLVLVDLLMPGMDGFETL 1069
Query: 1004 NHLREQKNGQLSDGHKVVLLVTSEAD----KDKYGSIFDIVMCKPIRASTIASSIQQLLK 837
LR Q + +LVT+ +D +D F + KP+ S + + + L
Sbjct: 1070 ARLRALPLRQ----QPLAILVTASSDPEIIEDATRMGFAEALLKPLSPSMLNDCLVRHLA 1125
Query: 836 --------VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCV 681
+ +A++ + S L++ IL+V+D +N VA A L++ G +
Sbjct: 1126 DIPGQTGGMPLADKPAGSDAESILKADFSSARILLVEDEPINQDVALAILEEIGWKIDVA 1185
Query: 680 ESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
+G+++++L++ + + MD+QMP MDG AT QIR+ + G T
Sbjct: 1186 ANGRESLALVE-ANDYQVVLMDMQMPVMDGLAATRQIRR---------------LPGHET 1229
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLY 378
LP++AMTA+ + C+++GM+ ++SKP + E LY
Sbjct: 1230 ----LPIIAMTANAFSEDRDRCVEAGMNDFLSKPVEPEVLY 1266
Score = 101 bits (251), Expect = 2e-19
Identities = 65/169 (38%), Positives = 86/169 (50%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYA 2061
V E ++ AEAA AKS FLA SHEIRTPMN + Q D
Sbjct: 739 VAERTAELAVAHEAAEAASRAKSAFLANMSHEIRTPMNAIVGLTYMLRRTITDSGQADKL 798
Query: 2060 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELA 1881
L+ +IND+LD +KIEA KL L+ F+L L+ V S+ + REK +EL
Sbjct: 799 GKIAASADHLLGVINDILDISKIEANKLALDQSEFNLEELLSRVTSMVIDRVREKRLEL- 857
Query: 1880 VFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSN 1734
+ D ++GD R Q L N +GNAVKFT+ G + +R L E S+
Sbjct: 858 IIDTDASLGFLMGDATRLGQSLINYLGNAVKFTDYGSIVLRARLVEESS 906
>gb|AAO09997.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
ref|NP_760470.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
Length = 928
Score = 147 bits (372), Expect = 2e-33
Identities = 87/237 (36%), Positives = 134/237 (56%), Gaps = 11/237 (4%)
Frame = -2
Query: 2432 DEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYS 2253
D P H M + D R+ ++ R K+ ++ N + I L Y + +S
Sbjct: 199 DVTQPITH--MKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAI-SLSEYHVEMQHS 255
Query: 2252 RYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXX 2106
D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 256 -IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 314
Query: 2105 XXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVV 1926
+Q DY QT + L+ +IND+LD +K+EAGKL LE +PFD R +++V+
Sbjct: 315 QMLKTQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVI 374
Query: 1925 SLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
SL ++ + EK +E+ + + +P+ V+GDP R +Q+LTNLVGN++KFTERG++ V V
Sbjct: 375 SLQATSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSV 431
Score = 142 bits (358), Expect = 9e-32
Identities = 122/402 (30%), Positives = 188/402 (46%), Gaps = 3/402 (0%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D + L ++DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L MGG+I
Sbjct: 439 DSIDLQFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEI 498
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S TS GSTF F+ L HS + DS + +G + +LV+ +AVT+
Sbjct: 499 SLTSRLHQGSTFWFTLRL-HSTQMPMSDSIEA------EYLQGKELLLVEPNMQAAAVTQ 551
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLRE 990
L + GI N ++ N A + + + + ET L+
Sbjct: 552 QVLTQEGI--------NVTYRSLLPDN--AKGYDFVLLSLAVNQVYELETIENWLSRALH 601
Query: 989 QKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-VMCKPIRASTIASSI--QQLLKVEIAER 819
+S + + T A D+ F I + KP+ + S+ +Q L+ +
Sbjct: 602 -----ISANTILAIPSTELALADQLTERFGIQCLTKPLGRRKLLQSLAAKQTLQPLLPAP 656
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
++ Q S L ++L VDDN NL++ A L + +V+ SG+DA+ +
Sbjct: 657 ENAQAERSSL-------SVLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVDIATS-R 708
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
+FD FMD+QMP+MDG A I+Q EL AN PV+A+TA
Sbjct: 709 QFDLIFMDIQMPKMDGVTACKLIKQTELNANT-------------------PVIAVTAHA 749
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV 333
+ + +K+GMD Y++KP +E L Q + T DS V
Sbjct: 750 MSGERDRLLKAGMDDYLTKPIEEHILQQVLIHWNPNTCDSQV 791
>dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
ref|NP_935616.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 928
Score = 147 bits (372), Expect = 2e-33
Identities = 87/237 (36%), Positives = 134/237 (56%), Gaps = 11/237 (4%)
Frame = -2
Query: 2432 DEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYS 2253
D P H M + D R+ ++ R K+ ++ N + I L Y + +S
Sbjct: 199 DVTQPITH--MKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAI-SLSEYHVEMQHS 255
Query: 2252 RYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXX 2106
D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 256 -IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 314
Query: 2105 XXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVV 1926
+Q DY QT + L+ +IND+LD +K+EAGKL LE +PFD R +++V+
Sbjct: 315 QMLKTQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVI 374
Query: 1925 SLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
SL ++ + EK +E+ + + +P+ V+GDP R +Q+LTNLVGN++KFTERG++ V V
Sbjct: 375 SLQATSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSV 431
Score = 141 bits (356), Expect = 2e-31
Identities = 122/402 (30%), Positives = 188/402 (46%), Gaps = 3/402 (0%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D + L ++DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L MGG+I
Sbjct: 439 DSLDLQFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEI 498
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S TS GSTF F+ L HS + DS + +G + +LV+ +AVT+
Sbjct: 499 SLTSRLHQGSTFWFTLRL-HSTQMPMSDSIEA------EYLQGKELLLVEPNMQAAAVTQ 551
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLRE 990
L + GI N ++ N A + + + + ET L+
Sbjct: 552 QVLMQEGI--------NVTYRSLLPDN--AKGYDFVLLSLAVNQVYELETIENWLSRALH 601
Query: 989 QKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-VMCKPIRASTIASSI--QQLLKVEIAER 819
+S + + T A D+ F I + KP+ + S+ +Q L+ +
Sbjct: 602 -----ISANTILAIPSTELALADQLTERFGIQCLTKPLGRRKLLQSLAAKQTLQPLLPAP 656
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
++ Q S L ++L VDDN NL++ A L + +V+ SG+DA+ +
Sbjct: 657 ENAQAERSSL-------SVLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVDIATS-R 708
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
+FD FMD+QMP+MDG A I+Q EL AN PV+A+TA
Sbjct: 709 QFDLIFMDIQMPKMDGVTACKLIKQTELNANT-------------------PVIAVTAHA 749
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV 333
+ + +K+GMD Y++KP +E L Q + T DS V
Sbjct: 750 MSGERDRLLKAGMDDYLTKPIEEHILQQVLIHWNPNTCDSQV 791
>ref|NP_900860.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
ATCC 12472]
gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium violaceum
ATCC 12472]
Length = 1105
Score = 147 bits (371), Expect = 3e-33
Identities = 118/401 (29%), Positives = 189/401 (47%), Gaps = 7/401 (1%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
++ +V L ++EDTG+GIP Q +F PF QAD+ST+R +GGTG+GL+IS+ L LM
Sbjct: 538 EASPSQVRLRFAVEDTGIGIPKPKQRELFRPFTQADASTTRRFGGTGLGLAISQRLVALM 597
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG+I S P GS F F TL+ + SS + + + ++ D P+
Sbjct: 598 GGEIGLYSEPGQGSAFWF--TLRFPREQGIRLSSPEMAD--------LNVLIADDNPIAR 647
Query: 1181 AVTRYHLKRLGILLQVVNNMN-AVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQL 1008
LG ++ V + AV K +G ++ + D+ P+ D +
Sbjct: 648 ETLGVTASELGWKVRSVESGRLAVEKVMAMLDG------DQAVDVVVLDWKMPDMDGLAA 701
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSEA----DKDKYGSIFDIVMCKPIRASTIASSIQQLL 840
+R+ G+ ++L+ T+ + + + V+ KP+ S + +++ + L
Sbjct: 702 AQAIRQACRGKRM---PIILMATAYSREVLQAEPAAELVTEVLNKPVTPSGLYNAVARAL 758
Query: 839 KVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAI 660
+ + A Q+ + L G +LVVDD+ +N VA + GA+V+ GK+A+
Sbjct: 759 RPQTAPPPQIQH-----GNRLQGLRLLVVDDSDINREVAQRIFEDEGASVALANDGKEAL 813
Query: 659 SLL-QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLP 483
L D MDVQMP MDG+EAT IR +T A HLP
Sbjct: 814 DWLGLHGGEVDIVLMDVQMPVMDGYEATRAIR-------------------ATPALAHLP 854
Query: 482 VLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRL 360
V+A+TA A + ++GM Y++KPFD E + RL
Sbjct: 855 VVALTAGAFLAQQDAAREAGMSDYIAKPFDVEIAIGQLRRL 895
Score = 108 bits (270), Expect = 2e-21
Identities = 61/155 (39%), Positives = 84/155 (54%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+ E K AEAA AK+ FL+ SHEIRTPMN V D ++ G
Sbjct: 380 LRESKENAEAASRAKANFLSNMSHEIRTPMNAVLGLAYLLEKHGLPAEALDLVHKIRVAG 439
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
R+L +IND+LD +KIEAG LE+E F L ++D++ ++ S+ + IEL +
Sbjct: 440 RSLQAIINDILDFSKIEAGNLEIEQASFRLADVLDNLSTIMSASVGNRDIELIIAPPPQD 499
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+ GD R Q+L NL NA+KFTE GHV V +
Sbjct: 500 IDYLRGDALRLEQVLINLTSNAIKFTEHGHVKVSI 534
>gb|AAD09491.1| histidine kinase FIK [Fusarium solani f. sp. pisi]
Length = 1283
Score = 147 bits (371), Expect = 3e-33
Identities = 159/631 (25%), Positives = 269/631 (42%), Gaps = 9/631 (1%)
Frame = -2
Query: 2234 EDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQT 2055
+ ++ + + AE A+ KS+FLA SHEIRTPMNG+ Q++
Sbjct: 689 DSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQRE---- 744
Query: 2054 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF 1875
++ ++N++ + L +++DD++ L ++R IE
Sbjct: 745 -------MLNIVNNLAN----------------SLLTIIDDILDLSKIEARRMVIE---- 777
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM------EANQVL 1713
+P + G + + L AVK E+ F+ + +S++ ++ ++
Sbjct: 778 ---EIPYTLRGTVFDALKTL------AVKANEK---FLDLTYKVDSSVPDYVIGDSFRLR 825
Query: 1712 HGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSD 1533
+N G ++ T +G + L+ E ++RN GE +
Sbjct: 826 QIILNLVGNAIKFTEHGEVS-LTIKERVEQRN-----------------VRPGEYA---- 863
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
+ +EDTG+GI D +F F QAD S +R +GGTG+GLSISK + LMGG
Sbjct: 864 -----VEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRVVNLMGGD 918
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
+ S GS F F+ +K ++ D + + E ++G + + VD + +
Sbjct: 919 LWVISEQGKGSEFHFTCLVKLAHDDAA------MIEQQIRPYRGHQVLFVDKAQSKGGAS 972
Query: 1172 -RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ L+++G+ VV + + + A+GS +IL D R V +L
Sbjct: 973 IKGMLEQIGLHPVVVESEKSPALT---RLQASGSLPYDAILVDSIDTARRLRAVDDFKYL 1029
Query: 995 REQKNGQLSDGHKVVLL--VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAE 822
+VLL V + K M P + + + + L
Sbjct: 1030 ------------PIVLLAPVVHVSLKSCLDLGITSYMTTPCKLIDLGNGMIPAL------ 1071
Query: 821 RKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP 642
+N+ PS L IL+ +DN VN R+A L+KY V+ V +G +A+ ++
Sbjct: 1072 --ENRATPS-LADNTKSFEILLAEDNTVNQRLAVKILEKYHHVVTVVGNGWEAVEAVKRK 1128
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
+FD MDVQMP M GFEATG+IR+ E R P++A+TA
Sbjct: 1129 -KFDVILMDVQMPIMGGFEATGKIREYERGIGTHR----------------TPIIALTAH 1171
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
+ E+CI++ MD Y+SKP + L Q +
Sbjct: 1172 AMMGDREKCIQAQMDEYLSKPLQQNHLIQTI 1202
>gb|AAD40816.1| histidine kinase [Fusarium solani f. sp. pisi]
Length = 801
Score = 147 bits (371), Expect = 3e-33
Identities = 159/631 (25%), Positives = 269/631 (42%), Gaps = 9/631 (1%)
Frame = -2
Query: 2234 EDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQT 2055
+ ++ + + AE A+ KS+FLA SHEIRTPMNG+ Q++
Sbjct: 207 DSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQRE---- 262
Query: 2054 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVF 1875
++ ++N++ + L +++DD++ L ++R IE
Sbjct: 263 -------MLNIVNNLAN----------------SLLTIIDDILDLSKIEARRMVIE---- 295
Query: 1874 VCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM------EANQVL 1713
+P + G + + L AVK E+ F+ + +S++ ++ ++
Sbjct: 296 ---EIPYTLRGTVFDALKTL------AVKANEK---FLDLTYKVDSSVPDYVIGDSFRLR 343
Query: 1712 HGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSD 1533
+N G ++ T +G + L+ E ++RN GE +
Sbjct: 344 QIILNLVGNAIKFTEHGEVS-LTIKERVEQRN-----------------VRPGEYA---- 381
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
+ +EDTG+GI D +F F QAD S +R +GGTG+GLSISK + LMGG
Sbjct: 382 -----VEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRVVNLMGGD 436
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
+ S GS F F+ +K ++ D + + E ++G + + VD + +
Sbjct: 437 LWVISEQGKGSEFHFTCLVKLAHDDAA------MIEQQIRPYRGHQVLFVDKAQSKGGAS 490
Query: 1172 -RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHL 996
+ L+++G+ VV + + + A+GS +IL D R V +L
Sbjct: 491 IKGMLEQIGLHPVVVESEKSPALT---RLQASGSLPYDAILVDSIDTARRLRAVDDFKYL 547
Query: 995 REQKNGQLSDGHKVVLL--VTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAE 822
+VLL V + K M P + + + + L
Sbjct: 548 ------------PIVLLAPVVHVSLKSCLDLGITSYMTTPCKLIDLGNGMIPAL------ 589
Query: 821 RKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP 642
+N+ PS L IL+ +DN VN R+A L+KY V+ V +G +A+ ++
Sbjct: 590 --ENRATPS-LADNTKSFEILLAEDNTVNQRLAVKILEKYHHVVTVVGNGWEAVEAVKRK 646
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
+FD MDVQMP M GFEATG+IR+ E R P++A+TA
Sbjct: 647 -KFDVILMDVQMPIMGGFEATGKIREYERGIGTHR----------------TPIIALTAH 689
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
+ E+CI++ MD Y+SKP + L Q +
Sbjct: 690 AMMGDREKCIQAQMDEYLSKPLQQNHLIQTI 720
>ref|ZP_00640879.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Shewanella frigidimarina NCIMB 400]
gb|EAN72324.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Shewanella frigidimarina NCIMB 400]
Length = 946
Score = 147 bits (370), Expect = 4e-33
Identities = 119/406 (29%), Positives = 175/406 (43%), Gaps = 12/406 (2%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D D +TL + DTG+GI Q+ +F F QADSS SR +GGTG+GL I+K L MGG
Sbjct: 461 DEDNITLRCEVIDTGIGIDESQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINQMGG 520
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPT-AFKGMKAILVDGRPVRSA 1179
QI FTS P+ GS F F L G S + E LP A + +L + R +
Sbjct: 521 QIGFTSAPNKGSNFWFILPL--------GISQFEIGEVLPVDALQHKSVLLYEPRELTRD 572
Query: 1178 VTRYHLKRLGILLQVVNNMNAVVKAFPGQN--------GAAGSREKASILFIESDFWRPE 1023
L +++ V N + +N G + AS + + +
Sbjct: 573 TLNRRLVSWQLIITNVANPENLTSVLQTKNSKFDYIIMSCHGFADNASFIHLLQQA-KQH 631
Query: 1022 TDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIAS---SI 852
TD +L H D ++ ++ AD + D + + + S S+
Sbjct: 632 TDCLILLH-------DCLDQDMIINVLKVNADVLLSTPVSDFTLAHHLIYPPVPSTFVSL 684
Query: 851 QQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
+ + +++ +R + ++L VDDN NL++ LK+ NV V +G
Sbjct: 685 PEQINLDVTQR--------------LNASVLAVDDNMANLKLIDTLLKELVDNVVTVNNG 730
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
DAI + FD FMD+QMP DG AT QIR L N
Sbjct: 731 ADAIQQAK-KQPFDLIFMDIQMPGTDGITATQQIRSESLNRN------------------ 771
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVV 354
P++A+TA I E + SGMDG+ KP DE L +SR ++
Sbjct: 772 -TPIIAVTAHAIAEERENILASGMDGFSPKPIDELSLKSVISRWII 816
Score = 129 bits (325), Expect = 6e-28
Identities = 69/177 (38%), Positives = 108/177 (61%), Gaps = 11/177 (6%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 281 DQATSDLRETLEQIEIQNVELDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQL 340
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
+Q DY +T + L+ +IND+LD +K+EAGK+ LE +PF LR + + +++
Sbjct: 341 LKTPLHTSQLDYIKTIERSASNLLGIINDILDFSKLEAGKMILEKMPFALRETLTETLTI 400
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
+ ++EK +EL + + NVP+ V GD R QI+TNLVGNA+KFT++G V +++ L
Sbjct: 401 IAGSAQEKGLELVIDIDANVPESVSGDAMRVSQIITNLVGNAIKFTDKGSVILKIHL 457
>emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain
[Rhodopseudomonas palustris CGA009]
ref|NP_945670.1| sensor histidine kinase with a response regulator receiver domain
[Rhodopseudomonas palustris CGA009]
Length = 636
Score = 147 bits (370), Expect = 4e-33
Identities = 110/388 (28%), Positives = 181/388 (46%), Gaps = 9/388 (2%)
Frame = -2
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
L I + DTG+GI AQ R+F F QAD+ +RN+GGTG+GLSIS + MGG+I+ S
Sbjct: 272 LRIIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVAAMGGRIALES 331
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLK 1158
P GSTFT + L + ++ R+ P G ++V V +++ L+
Sbjct: 332 KPGEGSTFTITLPLS------TAENDRATAAFAPPDLHGSSVMIVSAHGVEASLAARRLE 385
Query: 1157 RLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQKNG 978
R G + +++ A + P ++ A + A + SD ++ L +
Sbjct: 386 RWGAETCLCDDLAAAIARLPERSWHAVLIDHA----LGSD------AIETL-----AREA 430
Query: 977 QLSDGHKVVLLVTSEADK--DKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
Q H++V+L + + + F + KP+R++++A+ + ++V D
Sbjct: 431 QARATHRLVMLTPAARHELLPDLPAAFTGYLVKPLRSASLAARLGTAVEVATPSIADGDP 490
Query: 803 RPSFLRSLLVGKN---ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR- 636
P S + ILV +DN +N + A L + G + V G+ A+
Sbjct: 491 PPVQDASSAITHEAFAILVAEDNDINALLIRALLHRLGHHAEIVGDGRRAVEAWGAADNT 550
Query: 635 ---FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTA 465
FD MDVQMP +DG A QIR +E + R +P+LA+TA
Sbjct: 551 GTPFDLVLMDVQMPILDGLAAARQIRTLEAERARSR----------------VPILALTA 594
Query: 464 DVIQATYEECIKSGMDGYVSKPFDEEQL 381
+ + E C++SGMDG++ KP D ++L
Sbjct: 595 NTLAEDREACLESGMDGFLVKPIDPDRL 622
Score = 122 bits (306), Expect = 1e-25
Identities = 63/153 (41%), Positives = 96/153 (62%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R + + A+AA+ AKS+ LA ASHEIRTP+NG+ Q YA+ +
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPLSAEQATYAKAVKT 166
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G AL+ L +++LD A+IEAGK+EL+ PF L SL++D++ L + +++ + +E+A + +
Sbjct: 167 SGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAADIDE 226
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHV 1767
+P +I D R RQ+L NL GNA+KFTE G V
Sbjct: 227 RLPVSLIVDAARLRQVLLNLCGNAIKFTETGGV 259
>ref|ZP_00764744.1| COG0642: Signal transduction histidine kinase [Vibrio sp. Ex25]
Length = 1059
Score = 147 bits (370), Expect = 4e-33
Identities = 112/389 (28%), Positives = 186/389 (47%), Gaps = 1/389 (0%)
Frame = -2
Query: 1520 TLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFT 1341
++ S++D+G+GI Q Q ++F PF Q D+ST+R +GGTG+GL+IS L ELMGG+I
Sbjct: 554 SIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLE 613
Query: 1340 SHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHL 1161
S GS F F T ++ +G S + + +V P R L
Sbjct: 614 SEKGKGSRFFFELTAPIVTQEFNGYHSLNHNDIW----------IVCNNPTLEQKLRDEL 663
Query: 1160 KRLGI-LLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQK 984
I + Q VN ++A+ E+ ++ +E+ P T + HL E K
Sbjct: 664 SFFHINVQQSVNTLDALPTWI--------DNERIIVINVETS---PNTAAK---HLGEMK 709
Query: 983 NGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQN 804
+ + ++ A +D +G+ ++ +P+ + +++ K+N
Sbjct: 710 RLCMQNVRVCLIKHLHSAQRD-FGNSISALVTQPLLGQRLVKALETCAANFPQANKENTT 768
Query: 803 RPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDAC 624
P+ ++L ILVVDDN VN ++A + K G + +G++A+ + Q +++
Sbjct: 769 TPN-AKTL---PKILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQ-QNQYCLI 823
Query: 623 FMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATY 444
MD MP MDGFEAT IRQ+E A E+R K +P++A+TA V+
Sbjct: 824 LMDCMMPVMDGFEATKMIRQIE--AKEKRTVK-------------IPIIALTASVVDDDI 868
Query: 443 EECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
++C GMD YV KPF L + + + +
Sbjct: 869 QKCFDVGMDDYVPKPFKAGLLKEKLDKAI 897
Score = 121 bits (303), Expect = 2e-25
Identities = 72/174 (41%), Positives = 99/174 (56%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
K+T+ E+ K A A AKS FLA SHEIRTP+NGV TQ+DY
Sbjct: 381 KLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLTATQRDY 440
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
T + + L++LINDVLD +KIE+G L + +R + D+ S+ S K++EK I++
Sbjct: 441 VDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDV 500
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEAN 1722
V + N P V+ D R RQI+ N + NAVKFTE+G V + V E N EA+
Sbjct: 501 QVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEAS 554
Score = 89.4 bits (220), Expect = 1e-15
Identities = 75/316 (23%), Positives = 123/316 (38%), Gaps = 22/316 (6%)
Frame = -2
Query: 1238 PTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS 1059
P A K ++VD V + H+ + G + N V F ++
Sbjct: 770 PNAKTLPKILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMF----------QQNQ 819
Query: 1058 ILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKV-VLLVTSEADKDKYGSIFDIVMC-- 888
I D P D + Q + K+ ++ +T+ D FD+ M
Sbjct: 820 YCLILMDCMMPVMDGFEATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDY 879
Query: 887 --KPIRASTIASSIQQLLKVEIA-----------------ERKDNQNRPSFLRSLLVGKN 765
KP +A + + + + + I+ E+ + + + + +
Sbjct: 880 VPKPFKAGLLKEKLDKAIGLRISNIVSDEKRLATNTTHTPEKTSHAEQSEATVTPIRSER 939
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
IL+V+DN+VN +VA+ L K G E+G+ A+ + Q FD MD MP MDGFE
Sbjct: 940 ILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGFE 999
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
A+ QIR E + P++A+TA V+ + C SGMD YV
Sbjct: 1000 ASRQIRAYEASKGLPK----------------TPIIALTASVVDDDIQRCFDSGMDAYVP 1043
Query: 404 KPFDEEQLYQAVSRLV 357
KP E+L + +
Sbjct: 1044 KPVRREKLLYQIENAI 1059
>gb|AAO07053.1| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
ref|NP_762063.1| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
Length = 1072
Score = 147 bits (370), Expect = 4e-33
Identities = 115/406 (28%), Positives = 194/406 (47%), Gaps = 17/406 (4%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V L I DTG+G+ + +FT F QAD ST+R YGGTG+GLSI + L ELMGGQI
Sbjct: 448 DLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQI 507
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S GS F F+ +K + ++ S +P + + ++ ++VD + +
Sbjct: 508 RVESEAGKGSHFIFNVLVK------ADPANSSAPSIVPQSLEKIRILVVDDNEHALEIMQ 561
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLR 993
L L + + N+ V A+ REK ++F+ D+ PE D ++ +R
Sbjct: 562 EMLSTLPGKVALANSGQQAVDCI---RKASEQREKFDLIFM--DWNMPEMDGIETSRLIR 616
Query: 992 EQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQLLKVEIA 825
E S+ +++VT+ +D + D+ + KP+ S + L VE+
Sbjct: 617 E---SFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFD-----LLVELF 668
Query: 824 ERKDNQNRPSFLRSL--------LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGK 669
R N + L L G +L+ +DN++N ++A ++ G V+ +G+
Sbjct: 669 GRDRNPTTQIRKKELPTHDSKNDLKGLKVLLTEDNEINQQIAVELMEGNGLLVTVANNGQ 728
Query: 668 DAISLLQPPHR----FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
+A+ L+ + FD FMD+QMP MDG+EA+ +IR + +
Sbjct: 729 EALEHLEAMEKGESHFDIVFMDLQMPVMDGYEASHRIR-------------------ANS 769
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ +P++AMTA + E C+ GM+ ++SKP D E L+ + +
Sbjct: 770 SYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815
Score = 114 bits (285), Expect = 3e-23
Identities = 62/157 (39%), Positives = 86/157 (54%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+++ + K +AE A KS FLA SHEIRTPMN + Q DY
Sbjct: 284 KELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDYVSKIHS 343
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
L+ +IND+LD +KIEAGKL +E F L + +V + K+ EK +EL +
Sbjct: 344 SATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKGLELIFDLPR 403
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
P+ ++GDP R QI+ NLV N+VKFTE+G + V V
Sbjct: 404 ETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSV 440
>dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1353
Score = 147 bits (370), Expect = 4e-33
Identities = 77/157 (49%), Positives = 101/157 (64%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+++E+ + QAE A+ AKS+FLAT SHEIRTPMN V Q+D+ QT
Sbjct: 808 QELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQ 867
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
G AL+T+IND+LD +KIE+GKL LE PFD+R ++DV+SL +SK++EK +EL
Sbjct: 868 AGEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTP 927
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
P + GD R RQIL NLVGN +KFT G V V V
Sbjct: 928 ETPAQIKGDVTRLRQILVNLVGNGIKFTHEGQVAVHV 964
Score = 137 bits (346), Expect = 2e-30
Identities = 113/393 (28%), Positives = 177/393 (45%), Gaps = 8/393 (2%)
Frame = -2
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
L ++DTG+GIP DR+F PF Q D+ST+R YGGTG+GL ISK L ELMGG +S S
Sbjct: 975 LQFQVQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVES 1034
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLK 1158
G+TFTF+ ++ + + A +G + +++D L
Sbjct: 1035 TEGQGTTFTFTI--------LAEGQKPYVPPKVHPALEGKRVLVIDDNAASRENLCTLLH 1086
Query: 1157 RLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPE-TDVQLLNHLREQKN 981
G++ ++ V++A P + A D P+ T +QL L+ + N
Sbjct: 1087 NWGMVPIGYSDPRLVLEAAPPWDLAV------------IDLNMPQMTGLQLAERLQSEPN 1134
Query: 980 GQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNR 801
+ ++L S + + + KPIR T+ ++ + L E A +
Sbjct: 1135 --FNQQPMILLTPLSWLETASRKELITAHVPKPIRPLTLRQTLIRTLSSESA------TQ 1186
Query: 800 PSFLRS---LLVGKN----ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPP 642
P+ ++ L +G IL+ +DN VN +VA LK+ G +G + + LQ
Sbjct: 1187 PALTKTGIDLNLGNRFPLRILLAEDNAVNQKVALHILKRMGYRADVAANGLEVLEALQQ- 1245
Query: 641 HRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTAD 462
+D MDVQMP+MDG E T +I + ++AMTA+
Sbjct: 1246 RPYDVILMDVQMPKMDGLETTERICAQWPPSQRPW------------------IIAMTAN 1287
Query: 461 VIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ E C +GMD Y+SKP E L A++R
Sbjct: 1288 ALAGDRERCFAAGMDDYISKPIKIEALAAALNR 1320
>gb|AAW86577.1| sensor protein BarA [Vibrio fischeri ES114]
ref|YP_205465.1| sensor protein BarA [Vibrio fischeri ES114]
Length = 931
Score = 146 bits (369), Expect = 5e-33
Identities = 89/237 (37%), Positives = 129/237 (54%), Gaps = 11/237 (4%)
Frame = -2
Query: 2432 DEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYS 2253
D P H M+ D R+ + R KL + N + I L Y + S
Sbjct: 198 DVTQPISH--MVSVVDRIRRGHLDVRIENKLHGELDTLKNGINAMAI-SLSEYHVEMQQS 254
Query: 2252 RYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXX 2106
D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 255 -IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 313
Query: 2105 XXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVV 1926
Q+DY QT + L+T+IND+LD +K+EAGKL LE +PFD + +D+VV
Sbjct: 314 QMLKTSLSENQQDYLQTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVV 373
Query: 1925 SLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
SL + + EK +E+ + + VP +IGDP R +Q+L NLVGNA+KFTE+G++ + V
Sbjct: 374 SLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISV 430
Score = 125 bits (315), Expect = 9e-27
Identities = 104/390 (26%), Positives = 176/390 (45%), Gaps = 3/390 (0%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V L + DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L MGG+I
Sbjct: 438 DYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEI 497
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
+S GSTF F T++ + D+ + +T+ + K +L++ +++ +
Sbjct: 498 GLSSRLHQGSTFWF--TIRMNPTDLPMLNEHDITQ-----LERKKLLLIEPNMQSASILQ 550
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLRE 990
G+ + + + +++ + S K SI ET ++ + L
Sbjct: 551 QQFISHGVFVTYRSTLPEIIEPHDYALISLSSNSKPSI----------ETIQEMTSQLSA 600
Query: 989 QKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMC--KPIRASTIASSIQQLLKVE-IAER 819
+ + L +T E ++ F + C KP + ++ ++ + E
Sbjct: 601 NCSTIIVGLPSTELALTDELNQ------FSHITCLSKPFAKKKLLDALLVEKDLQPVPEL 654
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
D S + L + ++ VDDN NL++ +A L + V ++G DA+ H
Sbjct: 655 PDLMAHASEEQKLPI--KVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH 712
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
FD MD+QMP+MDG A +IR+ L A PV+A+TA
Sbjct: 713 -FDIILMDIQMPKMDGVMACKEIRKTALNAQT-------------------PVVAVTAHA 752
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
++ E I GMD Y++KP +E L Q +
Sbjct: 753 MEGERERLISEGMDDYLTKPIEEHVLQQVI 782
>ref|ZP_00835021.1| COG0642: Signal transduction histidine kinase [Yersinia intermedia
ATCC 29909]
Length = 920
Score = 146 bits (369), Expect = 5e-33
Identities = 108/328 (32%), Positives = 149/328 (45%), Gaps = 11/328 (3%)
Frame = -2
Query: 2246 DKVTEDCRKMEE-----------LKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ E K +A+ A KS+FLA SHE+RTP+NGV
Sbjct: 258 DQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQT 317
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ DY QT Q L+ +INDVLD +K+EA KL LE +PF LR +D+V+ L
Sbjct: 318 LKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIIL 377
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + EK +EL + V ++VP+ LVG+A
Sbjct: 378 LAHTAHEKGLELTLHVNNDVPE--------------QLVGDA------------------ 405
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
M Q++ + G ++ T G + L +A
Sbjct: 406 --MRLQQIVTNLL---GNAIKFTEQGNIDILLAVQA------------------------ 436
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+VTL + I DTG+GI Q ++F F QAD+S SR +GGTG+GL I++
Sbjct: 437 -------KTDQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTGLGLVITE 489
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATL 1296
L + MGG ISF S GSTF F TL
Sbjct: 490 RLVKEMGGDISFYSQVDRGSTFRFHLTL 517
Score = 72.4 bits (176), Expect = 1e-10
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
++ VDDN NL++ L++ +SG AI+ + + D MD+QMPE+DG
Sbjct: 670 VMAVDDNPANLKLIGTLLEEQVEETVLCDSGAKAIAYARE-NTLDIILMDIQMPEIDGIR 728
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHL--PVLAMTADVIQATYEECIKSGMDGY 411
A+ I QM +HL P++A+TA ++ E+ +K GM Y
Sbjct: 729 ASEVIHQMS---------------------HHLDTPIIAVTAHAVRGQQEQLLKLGMADY 767
Query: 410 VSKPFDEEQLYQAVSR 363
++KP DE +L QA+SR
Sbjct: 768 LAKPIDETRLIQALSR 783
>gb|EAN71793.1| PAS [Shewanella denitrificans OS217]
ref|ZP_00633951.1| PAS [Shewanella denitrificans OS-217]
Length = 1233
Score = 146 bits (369), Expect = 5e-33
Identities = 121/416 (29%), Positives = 201/416 (48%), Gaps = 29/416 (6%)
Frame = -2
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
+++L + DTG+GI + Q +F F QAD ST+R YGGTG+GLSISK L +MGG +S
Sbjct: 871 QISLKFWVRDTGIGISREQQANLFDAFSQADGSTTRQYGGTGLGLSISKHLVSMMGGNLS 930
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTE---ALPTAFKGMKAILVDGRPVRSAV 1176
S P GSTF+F+ +S D ++ L + +P + +++VD P SA+
Sbjct: 931 VESEPQQGSTFSFT---------LSFDIAKELPQQPLVVPKQLNNLTSLVVDDNP--SAL 979
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFP-GQNGAAGSREKASILFIESDFWRPETDVQLLNH 999
Y + +++ F G N A G E L + + D+ LL+
Sbjct: 980 QIY---------------STLLRDFSFGVNTATGGAEAIERLL------QQDIDLLLLDW 1018
Query: 998 LREQKNG---------QLSDG----HKVVLLVTS------EADKDKYGSIFDIVMCKPIR 876
+ +G ++DG V++++T+ + DKY + V+ KP +
Sbjct: 1019 MMPVVSGGMVIKAVDEMIADGRLKKRPVIIIMTAYSTEPLNLELDKYE--YQAVLQKPFK 1076
Query: 875 ASTI------ASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAA 714
AS++ A + +K EIAE+ + Q S L IL+V+DN +N +VA+
Sbjct: 1077 ASSLFDEIIGAFAAPAKIKQEIAEQVEPQPLQSGL--------ILLVEDNFINQQVASEL 1128
Query: 713 LKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERK 534
LK G +V ++G+ A+ L+ FDA MD+QMP MDG A +R+
Sbjct: 1129 LKSAGYDVVIADNGQIALDLV-AKQEFDAVLMDIQMPVMDGLTAAKILRE---------- 1177
Query: 533 NKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVS 366
T + LP++AMTA + E+ + +GM+ +++KP +L++ ++
Sbjct: 1178 ---------TYSTQQLPIIAMTAHAMSGDKEKSLNAGMNAHITKPIVLTELFETLA 1224
Score = 125 bits (313), Expect = 2e-26
Identities = 65/149 (43%), Positives = 90/149 (60%)
Frame = -2
Query: 2213 ELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRA 2034
E K AE A++ KS+FLA SHEIRTPMN + Q+DY A +
Sbjct: 710 EAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTLQQQDYLNKAGFSAES 769
Query: 2033 LITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPK 1854
L+ +IND+LD +KIEAGKLELE+VPF L ++D V+ + + ++EK +EL +F
Sbjct: 770 LLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSPLTTGL 829
Query: 1853 VVIGDPWRFRQILTNLVGNAVKFTERGHV 1767
+ GDP R Q+L NL+ NAVKFT+ G +
Sbjct: 830 TLKGDPLRLGQVLVNLLSNAVKFTQDGEI 858
>gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
desulfuricans G20]
ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
desulfuricans G20]
Length = 981
Score = 146 bits (368), Expect = 7e-33
Identities = 119/401 (29%), Positives = 194/401 (48%), Gaps = 10/401 (2%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V L S+ DTG+GI +A++R+F F QA+ ST+R +GG+G+GLSI++ L LMGG I
Sbjct: 417 DVVQLEFSVRDTGLGIGEEARNRLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGGTI 476
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
+ S P GS F F+ + + R+ A +G ++ D R +TR
Sbjct: 477 TVASEPGKGSDFRFTGRFSLPVEAVEARHHRT-----GEAPRGRVLLVEDNESNRLVMTR 531
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLR 993
L+RLG + + + R+ A I D+ P D +++L LR
Sbjct: 532 M-LERLGYDCDALQDGYTAYERL--------KRQAALYDLILLDWRLPGVDGLEVLEKLR 582
Query: 992 EQKNGQLSDGHKVVLLVTS---EADKDKYGSI-FDIVMCKPIRASTIASSIQQLLKVEIA 825
+K V ++T+ EA+ ++ + + KP++ S+++ +I+ +
Sbjct: 583 AEKQPL-----PPVFMMTAFGREAELERAEELGVASFLSKPVKLSSLSDAIRAMR----G 633
Query: 824 ERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL-- 651
E + + + G L+V+DN +N VA L+ G +V E G++A+++L
Sbjct: 634 EMTPEEQTDTAMIRQFDGMRALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEALAVLDD 693
Query: 650 -QPPH--RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPV 480
+PP FD FMD+QMP MDG EAT IRQ H+P+
Sbjct: 694 VEPPSGPGFDVVFMDIQMPVMDGIEATRVIRQ-------------------HPRWRHIPI 734
Query: 479 LAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+AMTA V+ ++ +++GM+ YV+KP D L Q + R V
Sbjct: 735 IAMTAHVMSEDRDKALEAGMNDYVTKPVDRMMLLQVLQRHV 775
Score = 132 bits (333), Expect = 8e-29
Identities = 73/207 (35%), Positives = 115/207 (55%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYA 2061
V E +++E + AE A AK F+A+ SHE+RTPMN + Q++Y
Sbjct: 248 VAERTQELEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALKTELTVKQREYL 307
Query: 2060 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELA 1881
+ R+L+ ++ND+LD +KIEA K+ELE +PF + ++++V LF + K +EL
Sbjct: 308 TIIRSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVGMKGVELV 367
Query: 1880 VFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAM 1701
+ + +VP V++GDP R +Q+L NLV NA KFT++G V +RV + S + Q+
Sbjct: 368 LDIEADVPAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRS-QDVVQLEFSVR 426
Query: 1700 NGKGGRVESTANGAFNTLSGFEAADRR 1620
+ G E N F+T S E + R
Sbjct: 427 DTGLGIGEEARNRLFDTFSQAEGSTAR 453
>gb|AAG04317.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
ref|ZP_00138523.2| COG0642: Signal transduction histidine kinase [Pseudomonas aeruginosa
UCBPP-PA14]
ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa]
ref|ZP_00970596.1| COG0642: Signal transduction histidine kinase [Pseudomonas aeruginosa
2192]
ref|ZP_00965008.1| COG0642: Signal transduction histidine kinase [Pseudomonas aeruginosa
C3719]
Length = 925
Score = 146 bits (368), Expect = 7e-33
Identities = 120/399 (30%), Positives = 190/399 (47%), Gaps = 7/399 (1%)
Frame = -2
Query: 1544 NQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAEL 1365
++SD DR L IS++DTG+G+ + Q +F F QAD+S SR GGTG+GL ISK L E
Sbjct: 428 DESD-DRAQLRISVQDTGIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQ 486
Query: 1364 MGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVR 1185
MGG+I S P G+ F S +L S D E + G + L++ + +
Sbjct: 487 MGGEIGVDSTPGEGAEFWISLSLPKSRDDNE--------EPGASWAAGQRVALLEPQELT 538
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAF----PGQNGAAGSREKASILFIESDFWRPETD 1017
+ L G+ + +++++ ++ PGQ + ++L + + PE
Sbjct: 539 RRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQLPIS-----LAVLGVSAAIHPPEEL 593
Query: 1016 VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI-VMCKPIRASTIASSIQQLL 840
Q G K ++L + + ++ D V KP + +Q+LL
Sbjct: 594 SQSFWEFERL-------GCKTLVLCPTTEQAQYHATLPDEQVEAKPACTRKLQRKLQELL 646
Query: 839 KVEIAERKDNQNRPSFLRSLLVGK--NILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
+V R ++P +++ G+ +L VDDN NL + L GA V+ V+SG
Sbjct: 647 QV----RPTRSDKP---HAMVSGRPPRLLCVDDNPANLLLVQTLLSDLGAQVTAVDSGYA 699
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A+ ++Q RFD FMDVQMP MDG +AT IR+ E + +
Sbjct: 700 ALEVVQR-ERFDLVFMDVQMPGMDGRQATEAIRRWEAEREVSP----------------V 742
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
PV+A+TA + +++GMD Y++KP DE+QL Q V
Sbjct: 743 PVIALTAHALSNEKRALLQAGMDDYLTKPIDEQQLAQVV 781
Score = 136 bits (342), Expect = 7e-30
Identities = 78/185 (42%), Positives = 110/185 (59%), Gaps = 11/185 (5%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVA----------KSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ TED R+ +E ++ Q D+A KS+FLA SHEIRTP+NG+
Sbjct: 250 DQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLL 309
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
Q+DY T Q +L+ +IN++LD +KIEAGKL LE +PF+LR L+ D +++
Sbjct: 310 QKSELSPRQQDYLTTIQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTM 369
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + EK +EL V + P + GDP R +QILTNLVGNA+KFT+ G V VR L +
Sbjct: 370 LAPAAHEKQLELVSLVYRDTPIQLQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE 429
Query: 1739 SNMEA 1725
S+ A
Sbjct: 430 SDDRA 434
>gb|EAN27061.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00608513.1| PAS [Magnetococcus sp. MC-1]
Length = 1245
Score = 146 bits (368), Expect = 7e-33
Identities = 120/406 (29%), Positives = 201/406 (49%), Gaps = 11/406 (2%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+++ V L SI D+G+G+ ++F F QAD+ST+R YGGTG+GL+ISK L E+M
Sbjct: 576 EANDREVMLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMM 635
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
G+I S P VGSTF F+A + S LT L +G++ ++VD S
Sbjct: 636 HGKIWVESTPGVGSTFLFTA--RFGLSTHPAKSKLKLTGDL----QGLRVLIVDD----S 685
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKAS---ILFIESDFWRPETD-V 1014
A +R ++L I L +A + A + A R +A+ + +D+ P D V
Sbjct: 686 ATSREIFEQLAISL----GFDAHLAASASEALLAIYRAEAADTPYQLVYTDWKMPGMDGV 741
Query: 1013 QLLNHLREQKNGQLSDGHKVVLLVTSEADKDKY-----GSIFDIVMCKPIRASTIASSIQ 849
+L + L+ + Q H +++ + D+D+ + D + KP S++ +
Sbjct: 742 ELTHRLKTATDLQ----HPPKIIMVTAYDRDEMLRRLGSNTVDGFLTKPATCSSLMEAAM 797
Query: 848 QLLKVEIAERKDNQNRPSFLRSL--LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
+ +E +N L L G IL+V+DN++N +VA L+ V+ +
Sbjct: 798 LVFGLEARTDLENGGELLGLEELQSRAGARILLVEDNEINQQVATELLEMAHLEVAVASN 857
Query: 674 GKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE 495
G+ + +++ FD MD+QMP MDG+ A IRQ E R
Sbjct: 858 GQIGVEMVR-AEPFDLVLMDMQMPVMDGYTAARTIRQ------EARFQT----------- 899
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
LP+LAMTA+ + E+C+ +GM+ +V+KP D ++L+ A+++ +
Sbjct: 900 --LPILAMTANAMAGDREKCLAAGMNDHVAKPIDPKELFTALAKWI 943
Score = 134 bits (336), Expect = 3e-29
Identities = 81/203 (39%), Positives = 114/203 (56%), Gaps = 1/203 (0%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R++ K AE A AKS FLA SHEIRTPMN + Q+DY
Sbjct: 416 REILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTELSRKQQDYINKIHN 475
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
AL+ +IND+LD +KIEAGKL++E +PF L ++ + +L + K+REK +EL + +
Sbjct: 476 AANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKAREKGLELLIAMDP 535
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKG- 1689
VP +IGD R QIL NLV NAVKFT+ G + VRV E ++ E +L +++ G
Sbjct: 536 AVPDGLIGDDLRLGQILVNLVNNAVKFTDTGEIVVRVKQVEANDREV--MLQFSISDSGI 593
Query: 1688 GRVESTANGAFNTLSGFEAADRR 1620
G E+ FN+ S +A+ R
Sbjct: 594 GMTEAQVAKLFNSFSQADASTTR 616
>dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
Length = 1072
Score = 146 bits (368), Expect = 7e-33
Identities = 115/406 (28%), Positives = 193/406 (47%), Gaps = 17/406 (4%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V L I DTG+G+ + +FT F QAD ST+R YGGTG+GLSI + L ELMGGQI
Sbjct: 448 DLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELMGGQI 507
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S GS F F+ +K + ++ S +P + + ++ ++VD + +
Sbjct: 508 RVESEAGKGSHFIFNVLVK------ADPANSSAPSIVPQSLEKIRILVVDDNEHALEIMQ 561
Query: 1169 YHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLR 993
L L + + N+ V A+ REK ++F+ D+ PE D ++ +R
Sbjct: 562 EMLSTLPGKVALANSGQQAVDCI---RKASEQREKFDLIFM--DWNMPEMDGIETSRLIR 616
Query: 992 EQKNGQLSDGHKVVLLVTSEADKDKYGSIFDI----VMCKPIRASTIASSIQQLLKVEIA 825
E S+ +++VT+ +D + D+ + KP+ S + L VE+
Sbjct: 617 E---SFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFD-----LLVELF 668
Query: 824 ERKDNQNRPSFLRSL--------LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGK 669
R N + L L G +L+ +DN++N ++A ++ G V+ +G+
Sbjct: 669 GRDRNPTTQIRKKELPTHDSKNDLKGLKVLLTEDNEINQQIAVELMEGNGLLVTVANNGQ 728
Query: 668 DAISLLQP----PHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
+A+ L+ FD FMD+QMP MDG+EA+ +IR + +
Sbjct: 729 EALDHLEAMAKGESHFDIIFMDLQMPVMDGYEASHRIR-------------------ANS 769
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
+ +P++AMTA + E C+ GM+ ++SKP D E L+ + +
Sbjct: 770 SYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815
Score = 114 bits (285), Expect = 3e-23
Identities = 62/157 (39%), Positives = 86/157 (54%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
+++ + K +AE A KS FLA SHEIRTPMN + Q DY
Sbjct: 284 KELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTDLTPKQHDYVSKIHS 343
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
L+ +IND+LD +KIEAGKL +E F L + +V + K+ EK +EL +
Sbjct: 344 SATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSMVTGQKAFEKGLELIFDLPR 403
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
P+ ++GDP R QI+ NLV N+VKFTE+G + V V
Sbjct: 404 ETPRCLLGDPLRLGQIIINLVNNSVKFTEKGEITVSV 440
>gb|AAZ44999.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
ref|YP_283469.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
Length = 1005
Score = 146 bits (368), Expect = 7e-33
Identities = 113/394 (28%), Positives = 183/394 (46%), Gaps = 7/394 (1%)
Frame = -2
Query: 1517 LAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 1338
+ I DTG+G+ + +DR+F PF QAD+ST+R +GGTG+GL+ISK L ELM G+I S
Sbjct: 421 IRFEITDTGIGLAPEQRDRLFLPFEQADTSTTRKFGGTGLGLAISKRLTELMNGRIGVDS 480
Query: 1337 HPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYHLK 1158
P GSTF L+ ++ L E + +L+D P + LK
Sbjct: 481 TPGQGSTFWCELPLQCAHSQHERPRRNRLPETI-------NILLIDDDPNALEAISHMLK 533
Query: 1157 RLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLREQKN 981
+ ++ A + + A R +L +D+ P D ++ +RE
Sbjct: 534 AYDARITTADSGEAGLNCV--HSALAEGRHFDLVL---TDWAMPGMDGIETSRRIREI-- 586
Query: 980 GQLSDGHKVVLLVTSEADKD-----KYGSIFDIVMCKPIRASTIASSI-QQLLKVEIAER 819
L ++VL+ + + G ++ I KP+ S + S++ + LL AE
Sbjct: 587 --LPQAPRIVLVTAYGREWPMERLREAGIVYQIN--KPVIPSELESALLEALLGEHTAES 642
Query: 818 KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPH 639
++ + L G +L+ +DN +N VA LK G V E G+ A+ L +
Sbjct: 643 DHIKHHAETNLAPLSGHRVLLAEDNPINQEVALELLKDVGLRVDIAEDGRQAVELAAA-N 701
Query: 638 RFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADV 459
+D MD+QMP MDG EAT IR + + P+LAMTA+
Sbjct: 702 DYDLILMDIQMPNMDGIEATHAIRHLPQRTAT-------------------PILAMTANA 742
Query: 458 IQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ C+ +GM+ +++KP D ++LY+A+ R +
Sbjct: 743 FNEDRDACLGAGMNDHIAKPVDPQKLYEALLRWI 776
Score = 104 bits (259), Expect = 3e-20
Identities = 58/166 (34%), Positives = 86/166 (51%)
Frame = -2
Query: 2240 VTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYA 2061
V+E R++ K AE+A KS FLA SHEIRTPMN + +
Sbjct: 248 VSERTRELVIAKDAAESASRTKSAFLANMSHEIRTPMNAIVGLTHLLRRDTTTPKDAKHL 307
Query: 2060 QTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELA 1881
+ + L+++IND+LD +KIEA KL ++ F+ + + +L + ++ +K +E+
Sbjct: 308 DKINLAAQHLLSIINDILDFSKIEADKLIIDEADFEFEQIFQQLNTLITPQAMDKGLEVV 367
Query: 1880 VFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAE 1743
+ +P VV GD R QIL N NAVKFTE G + R L E
Sbjct: 368 DRIDPEIPAVVHGDAMRLGQILANFASNAVKFTEHGSIVFRARLLE 413
>ref|ZP_00687387.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Burkholderia ambifaria AMMD]
gb|EAO46180.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
[Burkholderia ambifaria AMMD]
Length = 1241
Score = 145 bits (367), Expect = 9e-33
Identities = 118/408 (28%), Positives = 187/408 (45%), Gaps = 14/408 (3%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
SD + I D+G+GI ++F PF QADSST+R YGGTG+GL IS+ LAE+MGG
Sbjct: 706 SDDGRIVFKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGT 765
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
++ S P GS FT + ++ SG+ + P+ G++ ++VD +V
Sbjct: 766 LALDSTPGKGSVFTVTTP----FEPASGEVGVA-AHGRPS-LAGLRVLIVDDSETDRSVL 819
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSR----EKASILFIESDFWRPETD-VQL 1008
H + V A G + + R + A D P D + L
Sbjct: 820 LEHAIEWHL---------CVASAIGGDDALSQLRAAVADGAPFDLAIIDVRMPGMDGISL 870
Query: 1007 LNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIV--MCKPIRAS----TIASSIQQ 846
+ H+R ++ L + L D + DI + KP+ + IA++
Sbjct: 871 VQHIR--RDPALRALRIITLTAFEMMDSIQVAHELDIAARLTKPLHGNDLYTAIAAAAVH 928
Query: 845 LLKVEIAER---KDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVES 675
++ +A D + +L+V+DN VN ++A A L+ V+ +
Sbjct: 929 VMPPRLASAAPVSDEAGADPGRPLDEIAARVLLVEDNAVNQQIALAMLEDTDYRVAVADD 988
Query: 674 GKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAE 495
G+ A+ +L+ FD MD QMP +DGFEAT ++R+ E +A R
Sbjct: 989 GEQALKMLEQD-AFDVVLMDCQMPVLDGFEATRRLRRREAEAGAPR-------------- 1033
Query: 494 YHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVG 351
LPV+A+TA+ + E C+ +GMD Y+ KPF + L Q ++R V G
Sbjct: 1034 --LPVIALTANALSGDRERCLAAGMDDYLGKPFRRDALLQTLARHVRG 1079
Score = 141 bits (356), Expect = 2e-31
Identities = 73/156 (46%), Positives = 99/156 (63%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLI 2019
AEAA+ AKS FLA SHEIRTPMNGV Q+ + T G+ L+ +I
Sbjct: 556 AEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVII 615
Query: 2018 NDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGD 1839
+D+LD +KIEAGKL LE + F+L L+DDVV+L ++ K +EL D+VP+ + GD
Sbjct: 616 DDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNAQRKELELVYQRADSVPQRMRGD 675
Query: 1838 PWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNM 1731
P R RQILTNL+GNA+KFTE GHV + +++ +
Sbjct: 676 PVRLRQILTNLLGNAIKFTEHGHVALSAAYSDDGRI 711
>dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
Length = 1051
Score = 145 bits (367), Expect = 9e-33
Identities = 117/411 (28%), Positives = 185/411 (45%), Gaps = 16/411 (3%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+S+ + S++D+G+GI Q Q R+F PF Q D ST+R +GGTG+GL+IS L ELM
Sbjct: 539 ESNESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELM 598
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDG---RP 1191
GG I S GS F F T S++ A T + + D
Sbjct: 599 GGSIQLESEKGRGSRFYFQLT---------APISQAHFRARHTVNNQIWLVCDDSDLETK 649
Query: 1190 VRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIE---------SD 1038
+R+ ++ Y ++ + Q V++++A+ +E+ IL++E +D
Sbjct: 650 LRNELSFYQIQ----VHQSVHDLSALPTWI-------NDKERIIILYVETTPDAAVKNTD 698
Query: 1037 FWR----PETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRAS 870
R V L+ HL Q QL GH+V ++T + + S
Sbjct: 699 LMRNLEHQHVQVCLIKHLHSQ---QLDFGHRVAAIITQPLLGQRLLKALE---------S 746
Query: 869 TIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANV 690
Q + V+ A R + + +LVVDDN VN ++A + K G +
Sbjct: 747 CAGRFTQSISVVQPATRLETLPK------------VLVVDDNTVNQKIAGLHVTKAGFSF 794
Query: 689 SCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEG 510
+G++A+ L + ++ MD MP MDGFEAT QIRQ+E K N
Sbjct: 795 DVAANGEEAVDLFR-TSQYCLILMDCMMPVMDGFEATKQIRQIEQKENR----------- 842
Query: 509 STTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
+ +P++A+TA V+ ++C GMD YV KPF + L + + + V
Sbjct: 843 ----TFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKADLLKEKLDKAV 889
Score = 125 bits (313), Expect = 2e-26
Identities = 71/173 (41%), Positives = 98/173 (56%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
K+T+ E K A A AKS FLA SHEIRTP+NGV TQ+DY
Sbjct: 373 KLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTATQRDY 432
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
T + + L++LINDVLD +KIE+G L + +R + D+ S+ S K++EK IEL
Sbjct: 433 VDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIEL 492
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEA 1725
V + N P ++ D R RQ++ N + NAVKFTERG V + + E++ EA
Sbjct: 493 TVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEA 545
Score = 97.4 bits (241), Expect = 3e-18
Identities = 79/309 (25%), Positives = 127/309 (41%), Gaps = 22/309 (7%)
Frame = -2
Query: 1217 KAILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESD 1038
K ++VD V + H+ + G V N V F + I D
Sbjct: 769 KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLF----------RTSQYCLILMD 818
Query: 1037 FWRPETD-VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMC----KPIRA 873
P D + +R+ + + ++ +T+ D FD+ M KP +A
Sbjct: 819 CMMPVMDGFEATKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKA 878
Query: 872 STIASSIQQLLKVEI---AERKDNQN------RPSFLRSL--------LVGKNILVVDDN 744
+ + + + + + A K NQ+ P F + + + + IL+V+DN
Sbjct: 879 DLLKEKLDKAVGLRLPVTASTKLNQSSLTAFEEPEFKQRVGETLSAAPMRRERILLVEDN 938
Query: 743 KVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQ 564
+VN +VA+ L K G E+G+ A+ + Q FD MD MP MDGFEAT QIR
Sbjct: 939 RVNQKVASLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGFEATKQIRA 998
Query: 563 MELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQ 384
E E+ P++A+TA V+ + C SGMD YV KP +E+
Sbjct: 999 YEASLGLEK----------------TPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEK 1042
Query: 383 LYQAVSRLV 357
L + ++
Sbjct: 1043 LLHQIENVM 1051
>ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01]
gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01]
Length = 937
Score = 145 bits (367), Expect = 9e-33
Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Frame = -2
Query: 2432 DEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYS 2253
D P H M + D R+ + R K+ ++ N + + L Y + +S
Sbjct: 199 DVTQPITH--MKNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAV-SLSEYHVEMQHS 255
Query: 2252 RYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXX 2106
D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 256 -IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 314
Query: 2105 XXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVV 1926
+Q DY QT + L+++IND+LD +K+EAGKL LE +PF+ ++ +++VV
Sbjct: 315 QMLKTHLSTSQTDYLQTIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVV 374
Query: 1925 SLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLA 1746
+L ++ + EK +EL + + VP V+GDP R +QILTNLVGN++KFTERG++ + V L
Sbjct: 375 NLQATNAHEKGLELTLKIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELR 434
Query: 1745 ENS 1737
S
Sbjct: 435 SQS 437
Score = 123 bits (309), Expect = 5e-26
Identities = 115/414 (27%), Positives = 181/414 (43%), Gaps = 19/414 (4%)
Frame = -2
Query: 1553 ENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCL 1374
E +QS+ D + L + DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L
Sbjct: 432 ELRSQSE-DSIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 490
Query: 1373 AELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPT-AFKGMKAILVDG 1197
MGG+IS TS GSTF F TL+ S D+ +TE + T + + +L++
Sbjct: 491 VSQMGGEISLTSRLHQGSTFWF--TLRLSTTDM------PMTELIETQCLQDKQLLLIEP 542
Query: 1196 RPVRSAVTRYHLKRLG------------------ILLQVVNNMNAVVKAFPGQNGAAGSR 1071
+++T+ L + G +LL + N G A G++
Sbjct: 543 NMQAASITQQILTQEGLVVTYRSVMPDESTSYDYVLLNLAANQEYQFDTVSG--WAIGAK 600
Query: 1070 EKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVM 891
+ A + I + P T++ L L ++ + V +T + K
Sbjct: 601 KIAQNVIIGT----PSTELALGEQLMKEVD---------VQCITKPLSRKKL-------- 639
Query: 890 CKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAAL 711
T+ S+ L E + P +L VDDN NL++ A L
Sbjct: 640 -----LQTLISNQAPTLIAPAIETHSEEKLP---------LTVLAVDDNPANLKLITALL 685
Query: 710 KKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKN 531
K+ V SG+ AI + FD FMD+QMP+MDG A I+++ AN
Sbjct: 686 KERVETVISCTSGQKAIDKAKET-PFDIIFMDIQMPQMDGVTACKNIKELANNAN----- 739
Query: 530 KLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
PV+A+TA + + +++GMD Y++KP +E L Q +
Sbjct: 740 --------------TPVIAVTAHAMVGERDRLLEAGMDDYLTKPIEEHVLQQVL 779
>ref|ZP_00761785.1| COG0642: Signal transduction histidine kinase [Vibrio sp. Ex25]
Length = 932
Score = 145 bits (367), Expect = 9e-33
Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 11/304 (3%)
Frame = -2
Query: 2615 ADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSS 2436
A+ S E + IGY+ D+ SL ++ +++ + + + +++
Sbjct: 143 AELSNESQGTKAIGYIAVELDLSSLRLQQYQEVFSAFLVLILGLGLASVFASRLMH---- 198
Query: 2435 LDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAY 2256
D P H M + D R+ + R K+ + N + + L Y + +
Sbjct: 199 -DVTQPITH--MKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAV-SLSEYHVEMQH 254
Query: 2255 SRYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXX 2109
S D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 255 S-IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT 313
Query: 2108 XXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV 1929
+Q DY QT + L+ +IND+LD +K+EAGKL LE +PFD R +++V
Sbjct: 314 RQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEV 373
Query: 1928 VSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL 1749
++L ++ + EK +E+ + V +P ++GDP R +QILTNLVGN++KFTERG++ V V +
Sbjct: 374 INLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEM 433
Query: 1748 AENS 1737
S
Sbjct: 434 RSQS 437
Score = 129 bits (324), Expect = 8e-28
Identities = 110/399 (27%), Positives = 180/399 (45%), Gaps = 12/399 (3%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V L + DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L MGG+I
Sbjct: 439 DSVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEI 498
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S TS GSTF F+ L + +S L E G + +L++ ++VT+
Sbjct: 499 SLTSRLHQGSTFWFTVRLHSTEMPMS-----ELIEV--ELLTGKQLLLIEPNMQAASVTQ 551
Query: 1169 YHLKRLGILLQVVNNM--NAVVKAFPGQNGAAGSREKASIL--FIESD--------FWRP 1026
L + GIL+ +++ N + N AA A ++ +IE P
Sbjct: 552 QILSQEGILVTYRSSLPKNEEQYDYVLLNLAANQTHDADVITPWIEQAKRMAPSVILGTP 611
Query: 1025 ETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQ 846
T++ L + + +++ H L K I + V P ++ I S +
Sbjct: 612 STELALADQI-------MTEHHVQCLTKPLSRRKLLQSLISEHVESPPTLSAPITPSEGE 664
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L + +L VDDN NL++ +A L++ V+ +G+
Sbjct: 665 RLPL----------------------TVLAVDDNPANLKLISALLRERVETVTACSNGQQ 702
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ L ++D FMD+QMP+MDG A I+++EL +
Sbjct: 703 AVN-LATEKKYDLIFMDIQMPQMDGVTACQHIKELELNKD-------------------T 742
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
PV+A+TA + + + +GMD Y++KP +E L Q +
Sbjct: 743 PVIAVTAHAMAGERDRLLSAGMDDYLTKPIEEHVLQQVL 781
>dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 514
Score = 145 bits (366), Expect = 1e-32
Identities = 74/157 (47%), Positives = 103/157 (65%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R + K +AE K+ FLAT SHEIRTPMNGV Q+D+ +TAQ
Sbjct: 133 RMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTPDQRDHLETAQS 192
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
RAL+ +IND+LD +K+EAG+++LEA FDL L++++V+L +R+K + L++ + D
Sbjct: 193 SARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLTLSLRIAD 252
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
VP+ GDP R RQ+LTNL+GNAVKFTE+G V V V
Sbjct: 253 TVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDVAVSV 289
Score = 90.5 bits (223), Expect = 4e-16
Identities = 52/137 (37%), Positives = 73/137 (53%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
+SD L + DTG+GI A +F+ F+QADSS +R +GGTG+GLSI K L E+MGG
Sbjct: 293 ESDSSRLRFEVADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGG 352
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+I F S P G+TF F+ L + D ++ LP M +L + PV +
Sbjct: 353 EIGFDSIPGEGTTFHFTLPLSAALPDQDSGAAEDAGPDLPP----MAVLLAEDNPVNQKL 408
Query: 1175 TRYHLKRLGILLQVVNN 1125
T L R G + + N
Sbjct: 409 TTTLLDRWGQRVTLARN 425
Score = 80.1 bits (196), Expect = 6e-13
Identities = 47/136 (34%), Positives = 72/136 (52%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
+L+ +DN VN ++ L ++G V+ +G +AI+ + H FD MDV MP +DG E
Sbjct: 396 VLLAEDNPVNQKLTTTLLDRWGQRVTLARNGAEAIAAVARDH-FDLVLMDVHMPGIDGLE 454
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
AT +IR M +A I P++AMTADV+ C+ +GMD YV+
Sbjct: 455 ATRRIRAMS--------GPVAKI----------PIIAMTADVMDGDAALCLDAGMDDYVA 496
Query: 404 KPFDEEQLYQAVSRLV 357
KP + +L A+ R +
Sbjct: 497 KPVEPTRLLAALHRAI 512
>gb|AAZ48868.1| PAS [Dechloromonas aromatica RCB]
ref|YP_287338.1| PAS [Dechloromonas aromatica RCB]
Length = 916
Score = 145 bits (366), Expect = 1e-32
Identities = 79/173 (45%), Positives = 108/173 (62%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AEAA+ AKS FLA SHEIRTPMNGV Q++Y A+ +L+
Sbjct: 394 KEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALETALTEEQREYLNIAKSSAESLL 453
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
T+IND+LD +KIEAGKL++E +PFDL L+ D + + ++ EK IE+ V +VP+ V
Sbjct: 454 TVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKPLALRAHEKDIEILSDVVHDVPRFV 513
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKG 1689
GDP R RQ+L NLVGNA+KFTE+G + ++ L + N A V+H A+ G
Sbjct: 514 KGDPSRIRQVLVNLVGNAIKFTEQGEIALQADLMQLQNGHA--VIHFAVRDTG 564
Score = 140 bits (352), Expect = 5e-31
Identities = 121/400 (30%), Positives = 178/400 (44%), Gaps = 13/400 (3%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
Q + + ++ DTG+GI Q +F F Q DSST+R YGGTG+GLSI + L ELM
Sbjct: 548 QLQNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELM 607
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRS 1182
GG + S P GSTF FS L+ S I P G ++VD
Sbjct: 608 GGTLWLHSEPGKGSTFHFSVQLQISENAIP-------LVIHPVDVTGRHMLIVDDNATNR 660
Query: 1181 AVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASIL-FIESDFWRPETD-VQL 1008
+ R L L + Q +A G+ A RE+ S I D PE D +L
Sbjct: 661 RILRGMLATLHVTCQ---------EADSGKTALALMREQGSQFDCILLDAQMPEMDGYEL 711
Query: 1007 LNHLREQKNG-----QLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQL 843
HL + LS G + +A + + I KPI + + S++ +L
Sbjct: 712 ARHLHAEHPALPPMLMLSSG-----ALRGDALRCQEAGIAGF-FAKPISSDELLSALGRL 765
Query: 842 LKVEIAERKDNQNRPS------FLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCV 681
K++ PS LR NIL+V+D+ N ++A L K+G + +
Sbjct: 766 FD---NSPKESSPEPSPLLTRHSLREAQRVLNILLVEDHPTNQKLALGLLNKWGHHGTLA 822
Query: 680 ESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTT 501
++G++A+ +L FD MD+QMP M G EAT +IR E R
Sbjct: 823 QNGQEALDIL-ASQSFDIILMDMQMPVMSGVEATQRIRAREAAMQLPR------------ 869
Query: 500 AEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
P++AMTA +Q + C+ +GMD Y++KP ++L
Sbjct: 870 ----TPIIAMTAAAMQDDRDACLAAGMDDYLAKPIKVKEL 905
>ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 788
Score = 145 bits (366), Expect = 1e-32
Identities = 112/410 (27%), Positives = 193/410 (47%), Gaps = 15/410 (3%)
Frame = -2
Query: 1541 QSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELM 1362
+ D+ L + D+G+G+ + ++F F QAD+ST+R YGGTG+GL+ISK L ELM
Sbjct: 201 ERSEDQAELHFWVRDSGIGMTPEQCGKMFKSFSQADTSTTRKYGGTGLGLAISKTLVELM 260
Query: 1361 GGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEAL-PTAFKGMKAILVDGRPVR 1185
G+I S GSTF H + + S L P G++ ++VD
Sbjct: 261 DGRIWVESEAGKGSTF-------HFHVRVGVQSHPPLRRVFSPDELLGLRVLVVDDNAAA 313
Query: 1184 SAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNG----AAGSREKASILFIESDFWRPETD 1017
+ K G+ V A+ G AA R+ I D+ P D
Sbjct: 314 REILSAMAKGFGL---------EVDSAWDGTQALEMVAAAERKDLPYDLILMDWKMPIMD 364
Query: 1016 -VQLLNHLREQKNGQLSDGHKVVLLVT------SEADKDKYGSIFDIVMCKPIRASTIAS 858
V+ + L+ + ++ V++VT + + ++ G + V+ KP+ A+++
Sbjct: 365 GVETVQKLQHGDHARI----PAVIMVTAYGREEAATNAEERGVVMKTVLTKPVTAASLLE 420
Query: 857 SIQQLL-KVEIAERKDNQNRPSFLRSL--LVGKNILVVDDNKVNLRVAAAALKKYGANVS 687
+I + L K +AE + S+ ++ L G +L+V+DN++N +A L + G V
Sbjct: 421 AIGETLGKGVVAEHQGQDKAESYKETMKALEGCRVLLVEDNEMNQELATELLSQAGMEVV 480
Query: 686 CVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGS 507
G+DA+ +L +RFD MD QMP MDG+ AT IR +
Sbjct: 481 VAVHGQDALDILARDNRFDGILMDCQMPVMDGYTATRAIR-------------------A 521
Query: 506 TTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
A +PV+AMTA+ + E+ +++GM +++KP + E ++ +++ +
Sbjct: 522 NPALSAIPVIAMTANAMAGDREKVMEAGMLDHIAKPLNLETMFSTMAKWI 571
Score = 130 bits (326), Expect = 5e-28
Identities = 79/213 (37%), Positives = 110/213 (51%)
Frame = -2
Query: 2243 KVTEDCRKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDY 2064
K ED + K AE A AKS FLA SHEIRTPMN + Q++Y
Sbjct: 37 KAAEDA--IRAAKEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTKLDKKQRNY 94
Query: 2063 AQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIEL 1884
+ G L+ +IND+LD +KIEAGK+ +E++ F L +MD++ +L K+ ++ +EL
Sbjct: 95 IEKVHRSGENLLGIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGLKAEDRGLEL 154
Query: 1883 AVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGA 1704
V ++P +IGDP R QIL NL NAVKFTE+G + V L E S +A LH
Sbjct: 155 LFNVAPDIPSALIGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSEDQAE--LHFW 212
Query: 1703 MNGKGGRVESTANGAFNTLSGFEAADRRNSWQY 1605
+ G + T F AD + +Y
Sbjct: 213 VRDSG--IGMTPEQCGKMFKSFSQADTSTTRKY 243
>ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
Length = 937
Score = 145 bits (366), Expect = 1e-32
Identities = 88/243 (36%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Frame = -2
Query: 2432 DEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYS 2253
D P H M + D R+ + R K+ ++ N + + L Y + +S
Sbjct: 199 DVTQPITH--MKNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAV-SLSEYHVEMQHS 255
Query: 2252 RYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXX 2106
D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 256 -IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR 314
Query: 2105 XXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVV 1926
+Q DY QT + L+++IND+LD +K+EAGKL LE +PF+ ++ +++VV
Sbjct: 315 QMLKTHLSNSQTDYLQTIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVV 374
Query: 1925 SLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLA 1746
+L ++ + EK +EL + + VP V+GDP R +QILTNLVGN++KFTERG++ + V L
Sbjct: 375 NLQATNAHEKGLELTLKIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELR 434
Query: 1745 ENS 1737
S
Sbjct: 435 SQS 437
Score = 125 bits (315), Expect = 9e-27
Identities = 116/415 (27%), Positives = 183/415 (44%), Gaps = 20/415 (4%)
Frame = -2
Query: 1553 ENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCL 1374
E +QS+ D + L + DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L
Sbjct: 432 ELRSQSE-DSIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKL 490
Query: 1373 AELMGGQISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPT-AFKGMKAILVDG 1197
MGG+IS TS GSTF F TL+ S D+ +TE + T +G + +L++
Sbjct: 491 VSQMGGEISLTSRLHQGSTFWF--TLRLSTTDM------PMTELIETQCLQGKQLLLIEP 542
Query: 1196 RPVRSAVTRYHLKRLG------------------ILLQVVNNMNAVVKAFPGQNGAAGSR 1071
+++T+ L + G +LL + N G A G++
Sbjct: 543 NMQAASITQQILTQEGLVVTYRSVMPDESTSYDYVLLNLAANQEYQFDTVSG--WAIGAK 600
Query: 1070 EKASILFIESDFWRPETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVM 891
+ A + I + P T++ L L ++ + V +T + K
Sbjct: 601 KIAQNVIIGT----PSTELALGEQLMKEVD---------VQCITKPLSRKKL-------- 639
Query: 890 CKPIRASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAAL 711
T+ S+ L E + P +L VDDN NL++ A L
Sbjct: 640 -----LQTLVSNQAPTLIAPAIETHSEEKLP---------LTVLAVDDNPANLKLITALL 685
Query: 710 KKYGANVSCVESGKDAI-SLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERK 534
K+ V SG+ A+ + P FD FMD+QMP+MDG A +I+ + AN
Sbjct: 686 KERVETVISCTSGQKALDKATETP--FDVIFMDIQMPQMDGVTACQKIKALANNAN---- 739
Query: 533 NKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
PV+A+TA + + +++GMD Y++KP +E L Q +
Sbjct: 740 ---------------TPVIAVTAHAMMGERDRLLEAGMDDYLTKPIEEHVLQQVL 779
>ref|ZP_00831566.1| COG0642: Signal transduction histidine kinase [Yersinia frederiksenii
ATCC 33641]
Length = 920
Score = 145 bits (366), Expect = 1e-32
Identities = 105/328 (32%), Positives = 150/328 (45%), Gaps = 11/328 (3%)
Frame = -2
Query: 2246 DKVTEDCRKMEE-----------LKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ E K +A+ A KS+FLA SHE+RTP+NGV
Sbjct: 258 DQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQT 317
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ DY QT Q L+ +INDVLD +K+EA KL LE +PF LR +D+V+ L
Sbjct: 318 LKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIIL 377
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAEN 1740
+ + EK +EL + V +VP+ V +G+A
Sbjct: 378 LAHTAHEKGLELTLHVNKDVPEQV--------------IGDA------------------ 405
Query: 1739 SNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXX 1560
M Q++ + G ++ T G + L +A
Sbjct: 406 --MRLQQIITNLL---GNAIKFTEQGNIDILVAVQA------------------------ 436
Query: 1559 EGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISK 1380
+ +VT+ + I DTG+GI Q ++F F QAD+S SR +GGTG+GL I++
Sbjct: 437 -------KTTQQVTIVVEIHDTGIGISESQQSQLFQAFRQADASISRRHGGTGLGLVITE 489
Query: 1379 CLAELMGGQISFTSHPSVGSTFTFSATL 1296
L + MGG+I+F S GSTF F TL
Sbjct: 490 RLVKEMGGEINFHSQVDRGSTFRFHLTL 517
Score = 71.2 bits (173), Expect = 3e-10
Identities = 42/134 (31%), Positives = 67/134 (50%)
Frame = -2
Query: 764 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFE 585
++ VDDN NL++ L++ +SG AI+ + + D MD+QMPE+DG
Sbjct: 670 VMAVDDNPANLKLIGTLLEELVEETMLCDSGAKAIAYARE-NTLDIILMDIQMPEIDGIR 728
Query: 584 ATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVS 405
A+ I QM + P++A+TA ++ E+ +K GM Y++
Sbjct: 729 ASEIIHQM-------------------SHHQDTPIIAVTAHAVRGQQEQLLKLGMADYLA 769
Query: 404 KPFDEEQLYQAVSR 363
KP DE +L QA+SR
Sbjct: 770 KPIDEARLIQALSR 783
>emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
ref|YP_339263.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
Length = 918
Score = 145 bits (365), Expect = 1e-32
Identities = 113/393 (28%), Positives = 187/393 (47%), Gaps = 4/393 (1%)
Frame = -2
Query: 1535 DSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGG 1356
D +R ++ +S+ DTGVGIP+ QD +FT F QADSS +R +GGTG+GL I+K + E M G
Sbjct: 436 DDERTSILVSVADTGVGIPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSG 495
Query: 1355 QISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAV 1176
+I+ S P G+ FTF+ + + D LPT K++L G+ V
Sbjct: 496 KITLNSAPGNGTCFTFNGVFRLPNHVFASD--------LPT-----KSLL--GKHVLYLE 540
Query: 1175 TRYHLKRLGILLQVVNNMN-AVVKAFPGQN--GAAGSREKASILFIESDFWRPETDVQLL 1005
H +L ++N +V F A ++E+ + I D +L
Sbjct: 541 PHEHTHH--AVLSLLNEWQISVTGCFSDAEFLAAIDNKEQQYDICIIGDMASVNDMQRLK 598
Query: 1004 NHLREQKNGQLSDGHKVVLLVTSEADKDKY-GSIFDIVMCKPIRASTIASSIQQLLKVEI 828
H++ + + +D ++L S + ++ + GS D + KP+ + + +++
Sbjct: 599 AHVKAVR--ESTDYLYLMLNTVSHSMREAFIGSGADACLSKPLNHRKLCELLAAPYRLDH 656
Query: 827 AERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQ 648
QN + L+ +LVVDDN NL++ L + + +G A S L
Sbjct: 657 PVHNIEQNEQT-----LLPLKVLVVDDNDANLKLIYTLLNEQVELIDTAHNGSQAYS-LS 710
Query: 647 PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMT 468
H++D FMD+QMP MDG A I++ L NE+ P++A+T
Sbjct: 711 KSHKYDVIFMDIQMPIMDGITACKLIKESSL--NED-----------------TPIIAVT 751
Query: 467 ADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
A + + E+ +K G +GY++KP DE+ L Q +
Sbjct: 752 AHALHSEKEQLLKDGFEGYLTKPIDEDMLNQII 784
Score = 131 bits (329), Expect = 2e-28
Identities = 67/175 (38%), Positives = 109/175 (62%), Gaps = 11/175 (6%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQ----------AEAADVAKSQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+ +TQ A+ A+ KS FLA SHE+RTP+NGV
Sbjct: 256 DQATSDYRETLEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQL 315
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
QKDY T ++ +L+T+I+D+LD +K+EAG +ELE++ F LR +++V++L
Sbjct: 316 HKTPLNKNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTL 375
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+ + +K +EL++++ VP + GDP R +Q+L NL+ NA+KFTE+G + V +
Sbjct: 376 LAPSAHDKQLELSIYISPQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDI 430
>ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
Length = 925
Score = 145 bits (365), Expect = 1e-32
Identities = 78/194 (40%), Positives = 117/194 (60%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K +A+ A+ KS FLA SHE+RTP+NGV QKDY T ++ +L+
Sbjct: 279 KKEAQDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKTPLNKHQKDYLDTIELSANSLL 338
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
+IND+LD +K+EAG +ELE++ F LR +++V++L + + +K +EL++ + DNVP +
Sbjct: 339 AIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDNVPDSL 398
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
IGDP RF+QIL NL+ NA+KFTE GHV + V +N + + A+N G + +A
Sbjct: 399 IGDPTRFKQILINLISNAIKFTESGHVLIDVDCRHYANQRTS--IFVAINDSG--IGISA 454
Query: 1667 NGAFNTLSGFEAAD 1626
N S F AD
Sbjct: 455 NKQDALFSAFGQAD 468
Score = 126 bits (316), Expect = 7e-27
Identities = 110/396 (27%), Positives = 178/396 (44%), Gaps = 8/396 (2%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
+ R ++ ++I D+G+GI QD +F+ F QADSS +R +GGTG+GL I+K L E MGG
Sbjct: 436 NQRTSIFVAINDSGIGISANKQDALFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGH 495
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAIL-VDGRPVRSAV 1176
IS S GS FTF+A + R ++ LPT K +L +
Sbjct: 496 ISLNSAVGKGSCFTFNAFFE--------QPKRHYSDNLPTTPLEQKRVLYFETHHHTHEA 547
Query: 1175 TRYHLKRLGILLQVVNNMNAVVKAFPGQ-------NGAAGSREKASILFIESDFWRPETD 1017
T+ L+ + + ++ + +A G+ G A S + S + + RP+ D
Sbjct: 548 TQSLLQSWNMHVTACLSLAELEQALTGEFSFDIAILGHAASLDNMSEIKSLVNRVRPQCD 607
Query: 1016 VQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLK 837
L +V V+ + G+ D + KP+ + S+ +
Sbjct: 608 YLYL----------------MVNTVSHNMREAFIGTGADACLSKPLNHRKLCESLAAPYR 651
Query: 836 VEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAIS 657
++ + P + +L K +LVVDDN NL++ L + + +G A+S
Sbjct: 652 LD----HPSIQTPEQAQRILPIK-VLVVDDNDANLKLMCTLLAEQIEFIDTAHNGSQALS 706
Query: 656 LLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVL 477
L + H++D F+D+QMP MDG A I + +SI ST P++
Sbjct: 707 LAK-THKYDLIFLDIQMPIMDGVTACKLIIE-------------SSINEST------PII 746
Query: 476 AMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
A+TA + E +K G Y++KP DEE L Q +
Sbjct: 747 AVTAHALAGEKENLLKVGFKNYLTKPLDEEVLRQTI 782
>gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
plymuthica]
Length = 908
Score = 145 bits (365), Expect = 1e-32
Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 13/210 (6%)
Frame = -2
Query: 2246 DKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXXXXX 2100
D+ T D R+ +E+++ Q D+AK S+FLA+ SHE+RTP+NGV
Sbjct: 258 DQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLASMSHELRTPLNGVIGFTRQM 317
Query: 2099 XXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSL 1920
TQ DY QT + L+T+INDVLD +K+EAGKL LE +PF LR +D+V+ L
Sbjct: 318 LKTEMSVTQTDYLQTIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVL 377
Query: 1919 FSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCL--A 1746
+ + EK +EL + V ++VP+ VIGD R +QI+TNL+GNA+KFTE G++ +RV L
Sbjct: 378 LAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQ 437
Query: 1745 ENSNMEANQVLHGAMNGKGGRVESTANGAF 1656
++ +E +H G R +S AF
Sbjct: 438 QDHQVELEVQIHDTGIGISERQQSQLFQAF 467
Score = 116 bits (291), Expect = 6e-24
Identities = 103/400 (25%), Positives = 181/400 (45%), Gaps = 8/400 (2%)
Frame = -2
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
+V L + I DTG+GI + Q ++F F QAD+S SR +GGTG+GL I++ L + MGG I
Sbjct: 441 QVELEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDIC 500
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRY 1167
F S + GSTF F TL+ + SL +LP +G ++ P+ + T
Sbjct: 501 FHSQLNRGSTFWFHITLE------LHEGMLSLPSSLPD-LRGKTLGYIEANPMAAEAT-- 551
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLREQ 987
L L + V+ + + + P +N DF + ++L +
Sbjct: 552 -LNMLSVTSLVITH-SPTLAQLPKKN---------------YDFLLVGVPIPFRDNLAQH 594
Query: 986 KN---GQLSDGHKVVLLVTSEADKD-----KYGSIFDIVMCKPIRASTIASSIQQLLKVE 831
++ L+ +V+L + ++ + + G+I ++ KPI ++ + ++
Sbjct: 595 ESKLKAALNIAGRVILALPCQSQINAEQLKQQGAIGCLI--KPITSNRLFPLLRMEPPQR 652
Query: 830 IAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL 651
+ + + P ++ VDDN NL++ L + ESG++A++L
Sbjct: 653 LLAAPERKRLP---------LTVMAVDDNPANLKLIGTLLAEQVEKTLLCESGEEALALA 703
Query: 650 QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
+ + D MD+QMP +DG IRQ+ ST P++A+
Sbjct: 704 R-DNVLDLILMDIQMPNIDGIRTGELIRQL-------------PHHNST------PIVAV 743
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVG 351
TA + E +++GMD Y++KP DE L + ++R G
Sbjct: 744 TAHAVSGEREHLLQAGMDDYLAKPIDEAMLTRVLARYYSG 783
>gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
Length = 1000
Score = 145 bits (365), Expect = 1e-32
Identities = 98/305 (32%), Positives = 142/305 (46%)
Frame = -2
Query: 2207 KTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALI 2028
K AE+A+ AK FLA SHEIRTPMN V Q++Y Q A +L+
Sbjct: 435 KEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSLTDEQREYLQLAHASAESLL 494
Query: 2027 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVV 1848
++I+DVLD +KIE KLELE + F+L SL+ +++L S K+ K ++LA + ++P
Sbjct: 495 SIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIEKDLP--- 551
Query: 1847 IGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTA 1668
+ +G+ V+ QVL + G ++ T
Sbjct: 552 -----------STFIGDPVRL--------------------KQVLFNIL---GNAIKFTK 577
Query: 1667 NGAFNTLSGFEAADRRNSWQYFXXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGV 1488
G RNS SN + V L ++DTG+
Sbjct: 578 KGEIALSVEVYMPSERNSGL--------------------SNSDFPEEVALLFKVKDTGI 617
Query: 1487 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 1308
GIP + ++F PF+QAD+S +R YGGTG+GL+IS L ELM G+I S G TF F
Sbjct: 618 GIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISSQLVELMEGRIWVESEVGKGCTFYF 677
Query: 1307 SATLK 1293
+ +K
Sbjct: 678 TVRVK 682
Score = 84.7 bits (208), Expect = 2e-14
Identities = 47/139 (33%), Positives = 75/139 (53%)
Frame = -2
Query: 767 NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGF 588
N+L +D+ +N ++ L+K G ++ V SGKDA+ L FDA MD+QMP MDG
Sbjct: 722 NVLFAEDHPINQKLILGLLEKKGHKLTLVTSGKDALDALSR-RDFDAVLMDIQMPGMDGL 780
Query: 587 EATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYV 408
EAT +IR S +++P++A TA ++ E+C ++GM+ Y+
Sbjct: 781 EATRRIRD----------------PSSGVRRHNIPIIAFTARALKEDREKCFEAGMNYYI 824
Query: 407 SKPFDEEQLYQAVSRLVVG 351
SKP +E+L + + VG
Sbjct: 825 SKPLKKEKLLNILEDIRVG 843
>ref|ZP_00676854.1| PAS [Pelobacter propionicus DSM 2379]
gb|EAO37421.1| PAS [Pelobacter propionicus DSM 2379]
Length = 604
Score = 144 bits (364), Expect = 2e-32
Identities = 138/505 (27%), Positives = 216/505 (42%), Gaps = 19/505 (3%)
Frame = -2
Query: 2297 VIWM--------LLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEI 2142
V+WM +L A A +++E R+ +E AE+A AK QFLA SHE+
Sbjct: 176 VLWMAKEATEAAILAKETAKALRLEKEISESLRREKEA---AESATRAKDQFLANMSHEL 232
Query: 2141 RTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAV 1962
RTPM GV T ++Y TA +L+ ++ND+LD KIEAGK+ +E +
Sbjct: 233 RTPMTGVLGMLQLALEEELAPTLRNYLGTAHSSANSLLQILNDILDMTKIEAGKIIIEEM 292
Query: 1961 PFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFT 1782
PF R + V + + + R K +++A+ V + VP LVG+ ++
Sbjct: 293 PFSPRRCVTGAVDIITPEVRRKGLDIAISVAEEVPD--------------KLVGDQMRLR 338
Query: 1781 ERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANGAFNTLSGFEAADRRNSWQYF 1602
+ V + L N+ N+ GK V+ TA G
Sbjct: 339 Q-----VLINLIANAVKFTNE-------GKVA-VQVTAGG-------------------- 365
Query: 1601 XXXXXXXXXXXXXXEGENSNQSDSDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTS 1422
+N T A++ DTG+GIP +D +F F Q D+S +
Sbjct: 366 ------------------TNSDGKREYTFAVT--DTGIGIPEDKKDLLFHVFSQVDASHT 405
Query: 1421 RNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSATLKHSYKDISG-DSSRSLTE 1245
R YGGTG+GL+I K L ELMGG I F S VGSTF F+ +L+ + + + ++ L+
Sbjct: 406 RTYGGTGLGLAICKELVELMGGMIDFDSKEGVGSTFYFTISLREAKSERNAPTAAEPLSP 465
Query: 1244 ALPTAFKGMK---AILVDGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGS 1074
TA KG + +L + P + L + L + + V+ +
Sbjct: 466 ETFTAPKGERIPHLLLAEDDPTIQQILEMMLTKSNYSLDIAKDGKQAVEMW--------- 516
Query: 1073 REKASILFIESDFWRP---ETDVQLLNHLREQKNGQLSDGHKVVLLVTS----EADKDKY 915
E+ + D P DV L RE++ G GH ++ +T+ EA+K
Sbjct: 517 -EQGEYDLVLMDVQMPLLSGFDVTLAIRERERERG----GHTPIVAMTAHTGKEAEKKCI 571
Query: 914 GSIFDIVMCKPIRASTIASSIQQLL 840
+ D + KPI + I Q++
Sbjct: 572 AAGMDHYISKPIDFNECLKLIGQII 596
Score = 64.3 bits (155), Expect = 3e-08
Identities = 38/137 (27%), Positives = 68/137 (49%)
Frame = -2
Query: 767 NILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGF 588
++L+ +D+ ++ L K ++ + GK A+ + + +D MDVQMP + GF
Sbjct: 478 HLLLAEDDPTIQQILEMMLTKSNYSLDIAKDGKQAVEMWEQGE-YDLVLMDVQMPLLSGF 536
Query: 587 EATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYV 408
+ T IR+ E ER H P++AMTA + ++CI +GMD Y+
Sbjct: 537 DVTLAIRERE----RERGG-------------HTPIVAMTAHTGKEAEKKCIAAGMDHYI 579
Query: 407 SKPFDEEQLYQAVSRLV 357
SKP D + + + +++
Sbjct: 580 SKPIDFNECLKLIGQII 596
>dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae]
Length = 1134
Score = 144 bits (363), Expect = 2e-32
Identities = 118/401 (29%), Positives = 187/401 (46%), Gaps = 12/401 (2%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D+ L S+ DTG+GI D +F F QAD S +R +GGTG+GLSISK L LMGG I
Sbjct: 774 DKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSISKKLVNLMGGDI 833
Query: 1349 SFTSHPSVGSTFTFSA---TLKHSYKDISGDSSRSLTEALPTAFKGMKAILV-------- 1203
TS VGSTF F+ +L KDI+ +P +KG + + V
Sbjct: 834 WVTSAVGVGSTFHFTCAFTSLDPPVKDIT-------KYVIP--YKGCRVLFVEKISGHCN 884
Query: 1202 -DGRPVRSAVTRYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP 1026
DG+ ++ L+++G+ + VV + R + +L +
Sbjct: 885 EDGKGIQQT-----LQQMGLHVDVVRLEDGAAPTETAAQHGKDLRRQYDVLIAPT----M 935
Query: 1025 ETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQ 846
++ QL N R + + +V V S A K + P R + + I
Sbjct: 936 DSVSQLRNFDRFKTLPAV-----LVCPVVSVAMKSALDLGITSYVTTPCRPIELVNGILP 990
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
L+ + R + RP IL+ +DN+VN +VA +++Y NV+ V +G++
Sbjct: 991 ALEGRPSRRSAEETRPLA---------ILLAEDNEVNQKVALKVMQRYHHNVTVVSNGQE 1041
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A+ + ++D MDVQMP M GFE+T +IR E +L S+ H
Sbjct: 1042 ALDEFRHK-QYDVILMDVQMPVMGGFESTLRIRDYE---------RLHSLP-------HT 1084
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSR 363
P++A+TA + E+CI +GMD Y+ KP ++ Q+ + + +
Sbjct: 1085 PIIALTAHAMFGDREKCISAGMDDYLPKPLNQTQMMEMIHK 1125
Score = 105 bits (262), Expect = 1e-20
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Frame = -2
Query: 2198 AEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQ-KDYAQTAQMCGRALITL 2022
AE A+ +KS+FLA SHEIRTPMNG+ ++ G +L+ +
Sbjct: 616 AELANQSKSEFLANMSHEIRTPMNGIIGMTQLALDTDDLPPPTREMLNVVHNLGNSLLVI 675
Query: 2021 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 1842
I+D+LD +KIEA +++E+VPF L + + + + ++ E+ + L + ++V VIG
Sbjct: 676 IDDILDISKIEANHMKIESVPFSLGQTVFKALKILAVEASERSLHLTYHINNSVRDCVIG 735
Query: 1841 DPWRFRQILTNLVGNAVKFTERGHV 1767
D +R RQI+ NL+GNA+KFTE G +
Sbjct: 736 DAFRLRQIILNLIGNAIKFTETGQI 760
>dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
RIMD 2210633]
ref|NP_798946.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
RIMD 2210633]
Length = 932
Score = 144 bits (363), Expect = 2e-32
Identities = 94/298 (31%), Positives = 155/298 (52%), Gaps = 11/298 (3%)
Frame = -2
Query: 2615 ADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSS 2436
++ S E + IGY+ D+ SL ++ +++ + + + +++
Sbjct: 143 SELSNENQGTKAIGYIAVEMDLSSLRLQQYQEVFSAFLVLILGLGLASVFASRLMH---- 198
Query: 2435 LDEQVPFLHVSMLDFGDPFRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAY 2256
D P H M + D R+ + R K+ + N + + L Y + +
Sbjct: 199 -DVTQPITH--MKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAV-SLSEYHVEMQH 254
Query: 2255 SRYDKVTEDCRK-MEELKTQAEAADVAK----------SQFLATASHEIRTPMNGVXXXX 2109
S D+ T D R+ +E+L+ Q D+AK S+FLA SHE+RTP+NGV
Sbjct: 255 S-IDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT 313
Query: 2108 XXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDV 1929
+Q DY QT + L+ +IND+LD +K+EAGKL LE +PFD R +++V
Sbjct: 314 RQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEV 373
Query: 1928 VSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
++L ++ + EK +E+ + V +P ++GDP R +QILTNLVGN++KFTERG++ V V
Sbjct: 374 INLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSV 431
Score = 129 bits (324), Expect = 8e-28
Identities = 109/399 (27%), Positives = 179/399 (44%), Gaps = 12/399 (3%)
Frame = -2
Query: 1529 DRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 1350
D V L + DTG+GI + Q ++F F QAD+S SR YGGTG+GL I++ L MGG+I
Sbjct: 439 DSVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEI 498
Query: 1349 SFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTR 1170
S TS GSTF F+ L + +S L E G + +LV+ ++VT+
Sbjct: 499 SLTSRLHQGSTFWFTLRLNSTEMPMS-----DLIEV--ELLTGKQLLLVEPNMQAASVTQ 551
Query: 1169 YHLKRLGILLQVVNN------------MNAVVKAFPGQNGAAGSREKASILFIESDFWRP 1026
L + GIL+ ++ +N + A E+A + P
Sbjct: 552 QILSQEGILVTYRSSLPENEEHYDYVLLNLAANQTYDEQSVAAWIEQAKRMAPSVIMGTP 611
Query: 1025 ETDVQLLNHLREQKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPIRASTIASSIQQ 846
T++ L + Q+ H++ L + + S+ + + P +I
Sbjct: 612 STELALAD--------QIMTEHQIQCLTKPLSRRKLLQSLINEHVEAP-------QAITA 656
Query: 845 LLKVEIAERKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKD 666
++ E +ER + +L VDDN NL++ +A LK+ V+ +G+
Sbjct: 657 PVETEESER--------------LPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQ 702
Query: 665 AISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHL 486
A++ L ++D FMD+QMP MDG A I+++EL +
Sbjct: 703 AVN-LATEKKYDLIFMDIQMPLMDGVTACQNIKELELNKD-------------------T 742
Query: 485 PVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
PV+A+TA + + + +GMD Y++KP +E L Q +
Sbjct: 743 PVIAVTAHAMAGERDRLLAAGMDDYLTKPIEEHVLQQVL 781
>ref|ZP_00659515.1| PAS [Nocardioides sp. JS614]
gb|EAO05675.1| PAS [Nocardioides sp. JS614]
Length = 1072
Score = 144 bits (363), Expect = 2e-32
Identities = 119/401 (29%), Positives = 183/401 (45%), Gaps = 3/401 (0%)
Frame = -2
Query: 1526 RVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 1347
R L +S+ DTGVG+P +F F+QAD+ST+R +GGTG+GL+IS+ + + +GG+I
Sbjct: 569 RTRLHVSVTDTGVGVPANDVGELFEAFIQADASTTRRFGGTGLGLAISREIVQALGGEIG 628
Query: 1346 FTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRY 1167
+P GS F F+A L+ G + E + G + ++VD +
Sbjct: 629 MEPNPGGGSVFWFTADLESP----GGPRVDADDEYARSWLSGRRVLVVDDNQHNRLILEE 684
Query: 1166 HLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETD-VQLLNHLRE 990
L I + ++ + +A + AAG +A +L D P D + L LR
Sbjct: 685 QLGWWRIRVAAASSADEAEQAVAAAH-AAGDPFEAVLL----DLSMPGRDGLDLARSLRA 739
Query: 989 QKNGQLSDGHKVVLLVTSEADKDKYGSIFDIVMC--KPIRASTIASSIQQLLKVEIAERK 816
+ + L +V++L + IV C KP+ + + +++ L + E +
Sbjct: 740 EPSYDL----RVIMLASGSTPSAWDLRTAGIVACLTKPVLGAEVRAAL--LRHLAGVEPR 793
Query: 815 DNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHR 636
P +LVV+DN+VN VA L+ G E G A++ L H
Sbjct: 794 PEPELPVVGPDPGPRARVLVVEDNEVNQLVAVGLLEALGYRARVAEDGAAALTALAEEH- 852
Query: 635 FDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAMTADVI 456
FD MDVQMP MDG+ AT IR G + LPV+AMTA +
Sbjct: 853 FDLVLMDVQMPRMDGYAATRAIR-----------------AGESDGRSRLPVVAMTAAAV 895
Query: 455 QATYEECIKSGMDGYVSKPFDEEQLYQAVSRLVVGTTDSAV 333
+ E C+ +GMD +++KP D L AV VGT +V
Sbjct: 896 EGERERCVAAGMDDFLTKPVDAGAL-AAVLDQWVGTRSGSV 935
Score = 135 bits (340), Expect = 1e-29
Identities = 74/156 (47%), Positives = 96/156 (61%)
Frame = -2
Query: 2225 RKMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQM 2046
R++ + + A AA KS+FLAT SHEIRTP+NGV Q A Q+
Sbjct: 404 RELADARDVAMAASRQKSEFLATMSHEIRTPLNGVIGLNDLLLRTPLDPDQLRLASGVQV 463
Query: 2045 CGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCD 1866
RAL+ +IND+LD +KIEAGKLELE + F++R + D V SL +R K +EL V
Sbjct: 464 ASRALLGVINDILDFSKIEAGKLELERLDFEVRGVFDQVASLLGEAARAKGLELIVSCHS 523
Query: 1865 NVPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVR 1758
VP+V+ GDP R Q++TNL NAVKFTE G VF+R
Sbjct: 524 EVPEVLRGDPTRLAQVITNLGSNAVKFTEEGEVFIR 559
>ref|ZP_00317631.1| COG0642: Signal transduction histidine kinase [Microbulbifer
degradans 2-40]
Length = 861
Score = 144 bits (362), Expect = 3e-32
Identities = 112/407 (27%), Positives = 182/407 (44%), Gaps = 23/407 (5%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
S R+ L + DTG+GI Q Q +F F QAD+ST+R YGGTG+GLSI+K L E M G
Sbjct: 346 SGRIQLHFLVRDTGIGIAAQNQKHLFDSFTQADTSTTRKYGGTGLGLSIAKRLCETMNGA 405
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
IS S+ GSTF F + ++ R LP + + ++VD AV
Sbjct: 406 ISLESYEGKGSTFAF-------FIEVEASEERPPKAILPEYIRDFRVLVVDDNATSRAVI 458
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRP-ETDVQLLNHL 996
+L+ L + + V N G+ + + D P T L +
Sbjct: 459 TKYLEYLEVHVVAVEN---------GKQALTRLANNTTFDAVIIDRQMPGMTGDTLAQQI 509
Query: 995 REQKNGQLSDGHKVVLLVTSEADKDKYGSIFD-----IVMCKPIRASTIASSI-----QQ 846
R Q+N + +V +++ S + ++ + KP+RA+ + +++
Sbjct: 510 RMQQNDE-----RVPIIMLSNMKAEGASNLITELRLAAYITKPLRANQLYTALGFTFNSA 564
Query: 845 LLKVEIAERKDNQNRPSFLRSLLV--------GKNILVVDDNKVNLRVAAAALKKYGANV 690
E A D + P+ L K IL+V+DNK N VA L+ G N
Sbjct: 565 CYISENAPNSDTADTPTDTAPLPTITKPTNKERKKILLVEDNKTNQEVALLTLEILGYNA 624
Query: 689 SCVESGKDAISLLQ----PPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLA 522
G +AI +L+ + A MD QMP +DG++ T IR
Sbjct: 625 DVANHGGEAIEILKQQSDSEQHYGAILMDCQMPVLDGYKTTETIRS-------------- 670
Query: 521 SIEGSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQL 381
+ + +A ++P++A+TA+ ++ E+C+ +GM+ ++SKP D +L
Sbjct: 671 --DAALSAFKYIPIIALTANALRDDKEKCLAAGMNDFLSKPIDSAKL 715
Score = 122 bits (307), Expect = 8e-26
Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = -2
Query: 2318 TNPLGTFVI-WMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATASHEI 2142
++ +GT +I W+ G+ + + + ++++ + A AKS+FLA SHEI
Sbjct: 151 SDAIGTLIINWVAFGFCAITLTALCNSIVRLRHRLKQKNEELSEALKAKSEFLANMSHEI 210
Query: 2141 RTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAV 1962
RTPMNGV + Y A+ ++L+ +IND+LD +K+EAGKLELEA+
Sbjct: 211 RTPMNGVIGMLDVALLSETSPEKHRYLSVARNSAQSLLGIINDILDFSKVEAGKLELEAI 270
Query: 1961 PFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDPWRFRQILTNLVGNAVKFT 1782
D+ L+ +V+ FS + + +EL + + +V DP R +QIL NLVGNA+KFT
Sbjct: 271 DTDIDDLVHEVLVNFSGLAEQNDVELIADISPTISHLVKCDPGRIKQILNNLVGNALKFT 330
Query: 1781 ERGHVFVR 1758
G V V+
Sbjct: 331 PHGEVLVK 338
Score = 54.3 bits (129), Expect = 3e-05
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 1/165 (0%)
Frame = -2
Query: 860 SSIQQLLKVEIAE-RKDNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSC 684
S+ ++VE +E R P ++R +LVVDDN + V L+ +V
Sbjct: 416 STFAFFIEVEASEERPPKAILPEYIRDF----RVLVVDDNATSRAVITKYLEYLEVHVVA 471
Query: 683 VESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGST 504
VE+GK A++ L FDA +D QMP M G QIR ++ N+ER
Sbjct: 472 VENGKQALTRLANNTTFDAVIIDRQMPGMTGDTLAQQIR---MQQNDER----------- 517
Query: 503 TAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLYQAV 369
+P++ ++ + + + Y++KP QLY A+
Sbjct: 518 -----VPIIMLSNMKAEGASNLITELRLAAYITKPLRANQLYTAL 557
>dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1261
Score = 144 bits (362), Expect = 3e-32
Identities = 121/398 (30%), Positives = 194/398 (48%), Gaps = 16/398 (4%)
Frame = -2
Query: 1523 VTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 1344
V L ++++DTG+GI + +F F QADSST+RN+GGTG+GL+I K +AELMGG++
Sbjct: 677 VVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGV 736
Query: 1343 TSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVTRYH 1164
S GSTF L+ S + L +G + ++VD V +
Sbjct: 737 ESEYGQGSTFWAKVCLQKS-------NVIPHRLVLSKDLEGKRVLVVDDNDHARLVMKDL 789
Query: 1163 LKRLGILLQVVNNMNAVVKAFPGQNGAAGSREK--ASILFIESDFWRPETD-VQLLNHLR 993
L+++ +++ V + + A RE SI+FI D+ P D +++ L+
Sbjct: 790 LEQMKFVVETVESGPEALNFL-----AEADRENHPHSIVFI--DWQMPNMDGLEVARRLK 842
Query: 992 EQ-KNGQLSDGHKVVLLVTSEADKDKYGSI----FDIVMCKPIRASTIASSIQQLLKVEI 828
N Q S + +VT+ ++ + D V+ KPI S + S+ ++L
Sbjct: 843 AMGLNHQPS-----IFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPT 897
Query: 827 AERKDNQNRPSF------LRSL--LVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESG 672
A ++ + L L + G IL+V+DN++N VAA L+ G NV +G
Sbjct: 898 ALAQEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANG 957
Query: 671 KDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEY 492
A+ L + + MD+QMPEMDG EAT IRQ A
Sbjct: 958 LIALERLN-NNAYALVLMDMQMPEMDGIEATIAIRQNPRYA------------------- 997
Query: 491 HLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLY 378
LP++AMTA+V+Q E C+++GM+ ++ KP + E+L+
Sbjct: 998 QLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELW 1035
Score = 134 bits (336), Expect = 3e-29
Identities = 79/202 (39%), Positives = 112/202 (55%)
Frame = -2
Query: 2222 KMEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMC 2043
+M+ K AE A K+ FLA SHEIRTPMN V Q++Y +
Sbjct: 512 EMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFS 571
Query: 2042 GRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDN 1863
G+ L+ +IND+LD +KIEAGKL +E++ FDL ++D+V +L S K+ K +EL + N
Sbjct: 572 GQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRN 631
Query: 1862 VPKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGR 1683
+P+ IGDP R QIL N NAVKFTE+G + + V L E + + L G G +
Sbjct: 632 LPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIK 691
Query: 1682 VESTANGAFNTLSGFEAADRRN 1617
E AN FN+ +++ RN
Sbjct: 692 PEHIAN-LFNSFQQADSSTTRN 712
>gb|EAN29419.1| PAS [Magnetococcus sp. MC-1]
ref|ZP_00606263.1| PAS [Magnetococcus sp. MC-1]
Length = 2664
Score = 144 bits (362), Expect = 3e-32
Identities = 114/398 (28%), Positives = 189/398 (47%), Gaps = 6/398 (1%)
Frame = -2
Query: 1532 SDRVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQ 1353
++R+ L S++D+G+G+ + + +F F QAD+ST+R +GGTG+GL+ISK L E+M G+
Sbjct: 1998 TERIKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMMEGE 2057
Query: 1352 ISFTSHPSVGSTFTFSATLKHSYKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT 1173
I S P GS F FSA ++ G+ + + L + ++VD +
Sbjct: 2058 IDVDSVPEQGSDFHFSAWF--GLGEVRGEETLRVERDL----ANLHLLVVDDNSTAREIL 2111
Query: 1172 RYHLKRLGILLQVVNNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLLNHLR 993
+ G V+ + A AA + ++ + D+ P+ D L
Sbjct: 2112 AEMAQSFGFR---VDTAESGAAALAKVEAAAALNDPVQVVLM--DWKMPDMD-GLQTARA 2165
Query: 992 EQKNGQLSDGHKVVLLVT---SEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVE-IA 825
Q N L + V+++ EA + G + KP+ ST+ ++ L E ++
Sbjct: 2166 MQHNDDLQELPMVIMVTAYGREEAVQAATGVELKGFLTKPVSPSTLLDAVMGALGREGVS 2225
Query: 824 ERK--DNQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLL 651
R+ + Q S LL G +L+V+DN++N +A L G E+G +A+ L
Sbjct: 2226 GRRAHERQVEESEAIILLRGAKVLLVEDNEINQELALELLANAGILAKLAENGVEALQAL 2285
Query: 650 QPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEERKNKLASIEGSTTAEYHLPVLAM 471
Q FD MDVQMP MDG+ AT +IR+ A LPV+AM
Sbjct: 2286 Q-REPFDGVLMDVQMPIMDGYTATREIRKQ-------------------AAFKDLPVIAM 2325
Query: 470 TADVIQATYEECIKSGMDGYVSKPFDEEQLYQAVSRLV 357
TA+V+ A E+ +GM +VSKP D +++ +++ +
Sbjct: 2326 TANVMAADLEKAKAAGMQAHVSKPIDVREMFTTMAQWI 2363
Score = 115 bits (287), Expect = 2e-23
Identities = 63/155 (40%), Positives = 90/155 (58%)
Frame = -2
Query: 2219 MEELKTQAEAADVAKSQFLATASHEIRTPMNGVXXXXXXXXXXXXXXTQKDYAQTAQMCG 2040
+++ K A+AA+ AKS FLA SHEIRTPMN + Q++Y +
Sbjct: 1837 IQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLNGRQRNYITKVKRSA 1896
Query: 2039 RALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNV 1860
AL+ +IND+LD +KIEAGKL +E + F L ++D++ +L K+ EK +EL + +
Sbjct: 1897 EALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSNLVGLKAEEKGLELHFSLPPGL 1956
Query: 1859 PKVVIGDPWRFRQILTNLVGNAVKFTERGHVFVRV 1755
+ GDP R Q+L NL NAVKFT G V V+V
Sbjct: 1957 HTALKGDPLRLGQVLINLGNNAVKFTAHGDVVVKV 1991
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,015,152,202
Number of Sequences: 3454138
Number of extensions: 154398672
Number of successful extensions: 463877
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 380890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446882
length of database: 1,185,965,366
effective HSP length: 141
effective length of database: 698,931,908
effective search space used: 676566086944
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)