BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2907809.2.1
(614 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_919108.1| unknown protein [Oryza sativa (japonica cu... 147 3e-34
emb|CAA10129.1| hypothetical protein [Cicer arietinum] 131 2e-29
ref|NP_565547.1| unknown protein [Arabidopsis thaliana] >gi... 130 4e-29
pdb|1WVK|A Chain A, Nmr Solution Structure Of The Partially... 128 2e-28
emb|CAD52359.1| hypothetical protein, conserved [Plasmodium... 69 1e-10
ref|XP_643685.1| hypothetical protein DDB0202579 [Dictyoste... 69 1e-10
ref|XP_468864.1| expressed protein, having alternate splici... 69 2e-10
ref|XP_468863.1| expressed protein, having alternate splici... 67 5e-10
ref|XP_965005.1| hypothetical protein [Neurospora crassa N1... 67 5e-10
ref|XP_739812.1| hypothetical protein [Plasmodium chabaudi ... 67 6e-10
ref|XP_672987.1| hypothetical protein [Plasmodium berghei s... 67 6e-10
ref|XP_666320.1| hypothetical protein Chro.60358 [Cryptospo... 65 2e-09
ref|XP_381070.1| hypothetical protein FG00894.1 [Gibberella... 64 3e-09
ref|XP_680886.1| hypothetical protein AN7617.2 [Aspergillus... 62 1e-08
gb|AAW41628.1| hypothetical protein CNB04380 [Cryptococcus ... 61 2e-08
ref|XP_758879.1| hypothetical protein UM02732.1 [Ustilago m... 60 7e-08
ref|XP_665481.1| hypothetical protein Chro.40098 [Cryptospo... 55 1e-06
ref|XP_625681.1| hypothetical protein cgd4_790 [Cryptospori... 55 1e-06
ref|XP_729592.1| hypothetical protein PY01790 [Plasmodium y... 50 7e-05
ref|XP_736084.1| hypothetical protein PC100496.00.0 [Plasmo... 49 2e-04
gb|EAA11456.1| ENSANGP00000024785 [Anopheles gambiae str. P... 38 0.23
emb|CAJ02570.1| hypothetical protein, unknown function [Lei... 37 0.38
gb|EAA11947.3| ENSANGP00000018311 [Anopheles gambiae str. P... 36 0.86
gb|AAH77277.1| MGC80050 protein [Xenopus laevis] 34 4.3
emb|CAE68384.1| Hypothetical protein CBG14140 [Caenorhabdit... 33 5.6
gb|AAB70032.1| putative histone deacetylase [Arabidopsis th... 33 9.5
ref|NP_566872.1| HD2A (HISTONE DEACETYLASE 2A); nucleic aci... 33 9.5
>ref|NP_919108.1| unknown protein [Oryza sativa (japonica cultivar-group)]
dbj|BAC16171.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 77
Score = 147 bits (371), Expect = 3e-34
Identities = 68/76 (89%), Positives = 70/76 (92%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 303
MGGGN QKSKMARERN EKNKG KGSQLEANKKAMNIQCKICMQTFICTTSE KCKEHAE
Sbjct: 1 MGGGNGQKSKMARERNMEKNKGAKGSQLEANKKAMNIQCKICMQTFICTTSETKCKEHAE 60
Query: 304 ARHPKNDLYQCFPHLK 351
A+HPK+DL CFPHLK
Sbjct: 61 AKHPKSDLTACFPHLK 76
>emb|CAA10129.1| hypothetical protein [Cicer arietinum]
Length = 78
Score = 131 bits (329), Expect = 2e-29
Identities = 60/76 (78%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKG-GKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHA 300
MGGGN QK+KMARERN EK K GKGSQLE NKKAM+IQCK+CMQTFICTTSE KC+EHA
Sbjct: 1 MGGGNGQKAKMARERNLEKQKNAGKGSQLETNKKAMSIQCKVCMQTFICTTSEVKCREHA 60
Query: 301 EARHPKNDLYQCFPHL 348
EA+HPK+D+ CFPHL
Sbjct: 61 EAKHPKSDVLVCFPHL 76
>ref|NP_565547.1| unknown protein [Arabidopsis thaliana]
gb|AAN28739.1| At2g23090/F21P24.15 [Arabidopsis thaliana]
gb|AAC17825.1| Expressed protein [Arabidopsis thaliana]
gb|AAL08233.1| At2g23090/F21P24.15 [Arabidopsis thaliana]
gb|AAK96535.1| At2g23090/F21P24.15 [Arabidopsis thaliana]
gb|AAM62542.1| unknown [Arabidopsis thaliana]
Length = 78
Score = 130 bits (326), Expect = 4e-29
Identities = 61/77 (79%), Positives = 67/77 (87%), Gaps = 1/77 (1%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKG-GKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHA 300
MGGGNAQKS MAR +N EK K GKGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHA
Sbjct: 1 MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60
Query: 301 EARHPKNDLYQCFPHLK 351
EA+HPK D+ CFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77
>pdb|1WVK|A Chain A, Nmr Solution Structure Of The Partially Disordered Protein
At2g23090 From Arabidopsis Thaliana
Length = 86
Score = 128 bits (321), Expect = 2e-28
Identities = 60/76 (78%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
Frame = +1
Query: 127 GGGNAQKSKMARERNAEKNKG-GKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 303
GGGNAQKS MAR +N EK K GKGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAE
Sbjct: 10 GGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAE 69
Query: 304 ARHPKNDLYQCFPHLK 351
A+HPK D+ CFPHLK
Sbjct: 70 AKHPKADVVACFPHLK 85
>emb|CAD52359.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
ref|NP_705123.1| hypothetical protein [Plasmodium falciparum 3D7]
Length = 78
Score = 68.9 bits (167), Expect = 1e-10
Identities = 36/71 (50%), Positives = 48/71 (67%)
Frame = +1
Query: 130 GGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAR 309
G NA K ARER + KGGK SQL+ANK+A+N+ CK+C F+ T S ++ EHAE +
Sbjct: 4 GSNACKRNQARERKNVEVKGGK-SQLKANKEALNVTCKVCYTVFMQTQSISQLAEHAENK 62
Query: 310 HPKNDLYQCFP 342
H K D+ +CFP
Sbjct: 63 HNK-DVKECFP 72
>ref|XP_643685.1| hypothetical protein DDB0202579 [Dictyostelium discoideum]
gb|EAL69749.1| hypothetical protein DDB0202579 [Dictyostelium discoideum]
Length = 80
Score = 68.9 bits (167), Expect = 1e-10
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKGGKG--SQLEANKKAMNIQCKICMQTFICTTSEAKCKEH 297
M GN K++ RERN ++N+G SQL+ N+ A C IC +F+CT E + + H
Sbjct: 1 MPSGNGAKAQQKRERNLKRNEGASSAKSQLKTNEAAKTTICNICRASFLCTAKETELRIH 60
Query: 298 AEARHPKNDLYQCFP 342
++ +HPKN +CFP
Sbjct: 61 SDNKHPKNKFEECFP 75
>ref|XP_468864.1| expressed protein, having alternate splicing products [Oryza sativa
(japonica cultivar-group)]
gb|AAR89013.1| expressed protein, having alternate splicing products [Oryza sativa
(japonica cultivar-group)]
gb|AAO23088.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 42
Score = 68.6 bits (166), Expect = 2e-10
Identities = 33/42 (78%), Positives = 34/42 (80%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKIC 249
MGGGN QKS+MARERN EK KG KGSQLE NKKAMNIQ C
Sbjct: 1 MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQVGSC 42
>ref|XP_468863.1| expressed protein, having alternate splicing products [Oryza sativa
(japonica cultivar-group)]
gb|AAR89012.1| expressed protein, having alternate splicing products [Oryza sativa
(japonica cultivar-group)]
Length = 48
Score = 67.0 bits (162), Expect = 5e-10
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQ 237
MGGGN QKS+MARERN EK KG KGSQLE NKKAMNIQ
Sbjct: 1 MGGGNGQKSRMARERNMEKAKGAKGSQLETNKKAMNIQ 38
>ref|XP_965005.1| hypothetical protein [Neurospora crassa N150]
ref|XP_331801.1| predicted protein [Neurospora crassa]
gb|EAA35769.1| predicted protein [Neurospora crassa]
Length = 80
Score = 67.0 bits (162), Expect = 5e-10
Identities = 34/73 (46%), Positives = 42/73 (57%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 303
MGGGN K+ RERNA+ G SQL+ N AMNI C+ C TF+ T+ EHA+
Sbjct: 1 MGGGNGAKAAQKRERNAKNAAAGPKSQLKTNAAAMNIICQTCRATFLSTSRAKALDEHAQ 60
Query: 304 ARHPKNDLYQCFP 342
+H K L CFP
Sbjct: 61 NKHNKT-LADCFP 72
>ref|XP_739812.1| hypothetical protein [Plasmodium chabaudi chabaudi]
emb|CAH82357.1| conserved hypothetical protein [Plasmodium chabaudi]
Length = 75
Score = 66.6 bits (161), Expect = 6e-10
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +1
Query: 130 GGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAR 309
G NA K ARER + KGGK SQ++AN++A+N+ CK+C F+ T S ++ EHA+ R
Sbjct: 4 GSNACKRNQARERKTVEVKGGK-SQIKANQEALNVICKVCYTAFMKTQSISQLAEHAQNR 62
Query: 310 HPKNDLYQCFP 342
H K D+ +CFP
Sbjct: 63 HGK-DVKECFP 72
>ref|XP_672987.1| hypothetical protein [Plasmodium berghei strain ANKA]
emb|CAH99820.1| conserved hypothetical protein [Plasmodium berghei]
Length = 75
Score = 66.6 bits (161), Expect = 6e-10
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +1
Query: 130 GGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAR 309
G NA K ARER + KGGK SQ++AN++A+N+ CK+C F+ T S ++ EHA+ R
Sbjct: 4 GSNACKRNQARERKTVEVKGGK-SQIKANQEALNVICKVCYTAFMKTQSISQLAEHAQNR 62
Query: 310 HPKNDLYQCFP 342
H K D+ +CFP
Sbjct: 63 HRK-DVKECFP 72
>ref|XP_666320.1| hypothetical protein Chro.60358 [Cryptosporidium hominis TU502]
gb|EAL36090.1| hypothetical protein Chro.60358 [Cryptosporidium hominis]
Length = 78
Score = 64.7 bits (156), Expect = 2e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +1
Query: 130 GGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAR 309
GGNA K RER SQL+ N +AM+++C+IC+Q F+ + K+H EA+
Sbjct: 4 GGNACKRNQCRERKVANGAKESKSQLKVNAEAMSLKCQICLQPFMKVQTGPLLKQHWEAK 63
Query: 310 HPKNDLYQCFPHLK 351
HPK +CFP ++
Sbjct: 64 HPKKTFQECFPGIE 77
>ref|XP_381070.1| hypothetical protein FG00894.1 [Gibberella zeae PH-1]
gb|EAA67869.1| hypothetical protein FG00894.1 [Gibberella zeae PH-1]
Length = 73
Score = 64.3 bits (155), Expect = 3e-09
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = +1
Query: 133 GNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARH 312
GN K++ RER A K+K SQL+ N+KA +IQC+IC TF+ TT KEHAE +H
Sbjct: 2 GNGAKAQQKRER-AAKDKNTAKSQLKVNEKACDIQCQICKSTFLKTTKAPALKEHAENKH 60
Query: 313 PKNDLYQCFP 342
K + CFP
Sbjct: 61 SKT-IADCFP 69
>ref|XP_680886.1| hypothetical protein AN7617.2 [Aspergillus nidulans FGSC A4]
gb|EAA61803.1| hypothetical protein AN7617.2 [Aspergillus nidulans FGSC A4]
Length = 78
Score = 62.4 bits (150), Expect = 1e-08
Identities = 32/70 (45%), Positives = 40/70 (57%)
Frame = +1
Query: 133 GNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARH 312
GN K+ RERNA+ K G SQL+ N+ A +IQC +C TF+ TT EHA +H
Sbjct: 2 GNGAKAAFKRERNAKDTKSGGKSQLKTNEAAKDIQCVVCRATFLKTTRGPALTEHAANKH 61
Query: 313 PKNDLYQCFP 342
K L CFP
Sbjct: 62 NKT-LQDCFP 70
>gb|AAW41628.1| hypothetical protein CNB04380 [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_568935.1| hypothetical protein CNB04380 [Cryptococcus neoformans var.
neoformans JEC21]
gb|EAL22688.1| hypothetical protein CNBB1370 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 77
Score = 61.2 bits (147), Expect = 2e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +1
Query: 133 GNAQKSKMARERNAEKNKGGKG--SQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GN K++ R+RN K GKG SQL++N AM IQC C F T+ + ++H ++
Sbjct: 2 GNGAKAQAKRDRNT-KGAAGKGDQSQLKSNAAAMTIQCITCKAVFQGTSKQLVLQQHVDS 60
Query: 307 RHPKNDLYQCFP 342
+HPK+D+ CFP
Sbjct: 61 KHPKSDIKTCFP 72
>ref|XP_758879.1| hypothetical protein UM02732.1 [Ustilago maydis 521]
gb|EAK83630.1| hypothetical protein UM02732.1 [Ustilago maydis 521]
Length = 74
Score = 59.7 bits (143), Expect = 7e-08
Identities = 30/71 (42%), Positives = 40/71 (56%)
Frame = +1
Query: 133 GNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARH 312
GN K++ RERNA+ G SQ + N+ A N+ C C QTF+ T E +HA RH
Sbjct: 2 GNGAKAQQKRERNAKAAGGEAKSQKKTNEAARNVMCMTCRQTFLLTVREPALIQHASDRH 61
Query: 313 PKNDLYQCFPH 345
K L +CFP+
Sbjct: 62 NKT-LAECFPN 71
>ref|XP_665481.1| hypothetical protein Chro.40098 [Cryptosporidium hominis TU502]
gb|EAL35250.1| hypothetical protein Chro.40098 [Cryptosporidium hominis]
Length = 77
Score = 55.5 bits (132), Expect = 1e-06
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 142 QKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKN 321
Q+++ ++R A K GK S +E +K ++I C IC QTF+CT + + H + +HPK
Sbjct: 12 QRAQKRQDRTAPKT--GK-SIIEQKEKILSIVCNICKQTFMCTANRQTLEVHVDTKHPKL 68
Query: 322 DLYQCFPH 345
+ QCFP+
Sbjct: 69 EFSQCFPN 76
>ref|XP_625681.1| hypothetical protein cgd4_790 [Cryptosporidium parvum Iowa II]
gb|EAK87721.1| small conserved protein [Cryptosporidium parvum]
Length = 82
Score = 55.5 bits (132), Expect = 1e-06
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 142 QKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKN 321
Q+++ ++R A K GK S +E +K ++I C IC QTF+CT + + H + +HPK
Sbjct: 17 QRAQKRQDRTAPKT--GK-SIIEQKEKILSIVCNICKQTFMCTANRQTLEVHVDTKHPKL 73
Query: 322 DLYQCFPH 345
+ QCFP+
Sbjct: 74 EFSQCFPN 81
>ref|XP_729592.1| hypothetical protein PY01790 [Plasmodium yoelii yoelii str. 17XNL]
gb|EAA21157.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 71
Score = 49.7 bits (117), Expect = 7e-05
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 160 RERNAEKNKGGK-GSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQC 336
R R++++N+ K S ++ K +N+ CK+C TF+CT +++ KEH E +H K+ C
Sbjct: 11 RIRSSKRNEKAKPNSTVKDASKNLNVICKLCRHTFMCTVNQSILKEHHEKKHSKHAYEDC 70
Query: 337 F 339
F
Sbjct: 71 F 71
>ref|XP_736084.1| hypothetical protein PC100496.00.0 [Plasmodium chabaudi chabaudi]
emb|CAH74681.1| hypothetical protein PC100496.00.0 [Plasmodium chabaudi]
Length = 71
Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 160 RERNAEKNKGGK-GSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQC 336
R R++++N+ K S ++ K +N+ CK+C TF+CT +++ KEH E +H K+ C
Sbjct: 11 RIRSSKRNEKVKPNSTVKDASKNLNVICKLCRHTFMCTVNQSILKEHHEKKHSKHAYEDC 70
Query: 337 F 339
F
Sbjct: 71 F 71
>gb|EAA11456.1| ENSANGP00000024785 [Anopheles gambiae str. PEST]
ref|XP_315614.1| ENSANGP00000024785 [Anopheles gambiae str. PEST]
Length = 77
Score = 38.1 bits (87), Expect = 0.23
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 121 AMGGGNAQKSKMARERNAEKNKG---GKGSQLEANKKAMNIQCKICMQTFICTTSEAKCK 291
A G Q + A+E+ A+ K G Q++A +KA+ C +C K
Sbjct: 2 ARGHQKIQSQQKAQEKAAKMKKQQGHGLSDQMKAAQKALVFSCAVCKSQM---PDPKTYK 58
Query: 292 EHAEARHPKNDL 327
+H E +HPKNDL
Sbjct: 59 QHFENKHPKNDL 70
>emb|CAJ02570.1| hypothetical protein, unknown function [Leishmania major]
Length = 83
Score = 37.4 bits (85), Expect = 0.38
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +1
Query: 124 MGGGNAQKSKMARERNAEKNKGG----KGSQLEANKKAMN-IQCKICMQTFICTTSEAKC 288
M GN ++ RER +K +G ++ ++++ N IQCK+C+Q F T +
Sbjct: 1 MPSGNGCRANQRREREMKKTQGAGVKHTSEDMKKHEQSKNAIQCKVCLQGFPRTVRRPEL 60
Query: 289 KEHAEARHPKNDLYQCF 339
++H E +H K + +CF
Sbjct: 61 EQHFE-KHAK--IGKCF 74
>gb|EAA11947.3| ENSANGP00000018311 [Anopheles gambiae str. PEST]
ref|XP_315615.2| ENSANGP00000018311 [Anopheles gambiae str. PEST]
Length = 77
Score = 36.2 bits (82), Expect = 0.86
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 121 AMGGGNAQKSKMARERNAEKNKG---GKGSQLEANKKAMNIQCKICMQTFICTTSEAKCK 291
A G Q + A+E+ A+ K G Q++A +KA+ C +C K
Sbjct: 2 ARGHQKIQSQQKAQEKAAKLKKQQGHGLSDQMKAAQKALVFSCAVCKSQM---PDPKTYK 58
Query: 292 EHAEARHPKNDL 327
+H E +HPKN+L
Sbjct: 59 QHFENKHPKNEL 70
>gb|AAH77277.1| MGC80050 protein [Xenopus laevis]
Length = 76
Score = 33.9 bits (76), Expect = 4.3
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 121 AMGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHA 300
A G Q + +++ AE+ K Q A K A+ C +C K+H
Sbjct: 2 ARGHQKLQSQQKNQKKQAEQKKKHGHDQKAAAKAALVFTCSVCRTQM---PDPKTFKQHF 58
Query: 301 EARHPKNDL 327
E++HPKN L
Sbjct: 59 ESKHPKNPL 67
>emb|CAE68384.1| Hypothetical protein CBG14140 [Caenorhabditis briggsae]
Length = 76
Score = 33.5 bits (75), Expect = 5.6
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 154 MARERNAEKNKGGK----GSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKN 321
++++RNAEK K Q A K+++ +C +CM K+H E++HPK+
Sbjct: 9 LSQQRNAEKTAKAKKAVGSDQKTAAMKSLHHKCTVCMSMM---PDPKTYKQHFESKHPKS 65
Query: 322 DL 327
+
Sbjct: 66 PM 67
>gb|AAB70032.1| putative histone deacetylase [Arabidopsis thaliana]
Length = 257
Score = 32.7 bits (73), Expect = 9.5
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 136 NAQKSKMA--RERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAR 309
+A+K+K+A ++ EK KGGK + ++ K A + C C +TF S + H +A+
Sbjct: 185 SAKKAKVAVTPQKTDEKKKGGKAAN-QSPKSASQVSCGSCKKTF---NSGNALESHNKAK 240
Query: 310 H 312
H
Sbjct: 241 H 241
>ref|NP_566872.1| HD2A (HISTONE DEACETYLASE 2A); nucleic acid binding / zinc ion
binding [Arabidopsis thaliana]
gb|AAM20363.1| putative histone deacetylase [Arabidopsis thaliana]
gb|AAL38837.1| putative histone deacetylase [Arabidopsis thaliana]
gb|AAG28472.1| putative histone deacetylase [Arabidopsis thaliana]
sp|Q9FVE6|HD2A_ARATH Histone deacetylase 2a (HD-tuins protein 1)
Length = 245
Score = 32.7 bits (73), Expect = 9.5
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 136 NAQKSKMA--RERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAR 309
+A+K+K+A ++ EK KGGK + ++ K A + C C +TF S + H +A+
Sbjct: 185 SAKKAKVAVTPQKTDEKKKGGKAAN-QSPKSASQVSCGSCKKTF---NSGNALESHNKAK 240
Query: 310 H 312
H
Sbjct: 241 H 241
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 936,378,728
Number of Sequences: 3454138
Number of extensions: 14565755
Number of successful extensions: 32492
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 30766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32418
length of database: 1,185,965,366
effective HSP length: 124
effective length of database: 757,652,254
effective search space used: 60612180320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)