BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_475606.1| putative RNA polymerase II fifth largest s... 302 1e-80
gb|AAS98454.2| putative receptor kinase [Oryza sativa (japo... 294 3e-78
ref|XP_476209.1| putative receptor kinase [Oryza sativa (ja... 290 7e-77
ref|NP_193202.2| DNA-directed RNA polymerase [Arabidopsis t... 190 5e-47
emb|CAB10245.1| RNA polymerase II fifth largest subunit lik... 175 2e-42
ref|NP_566719.1| DNA-directed RNA polymerase [Arabidopsis t... 147 5e-34
dbj|BAB03035.1| RNA polymerase II fifth largest subunit-lik... 138 3e-31
ref|NP_193188.2| RNA binding [Arabidopsis thaliana] >gi|306... 100 1e-19
emb|CAB10231.1| hypothetical protein [Arabidopsis thaliana]... 94 5e-18
sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II 19 kDa ... 83 2e-14
gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza ... 82 3e-14
ref|NP_200726.1| DNA-directed RNA polymerase/ RNA binding [... 78 4e-13
gb|AAW43188.1| conserved hypothetical protein [Cryptococcus... 77 9e-13
gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus ... 72 3e-11
gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum] 69 3e-10
ref|XP_679476.1| DNA-directed RNA polymerase II [Plasmodium... 64 1e-08
ref|XP_639913.1| RNA polymerase II core subunit [Dictyostel... 62 2e-08
dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae] 62 3e-08
gb|AAN35466.1| DNA-directed RNA polymerase II, putative [Pl... 61 5e-08
ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago m... 61 5e-08
ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus... 60 1e-07
ref|NP_069946.1| DNA-directed RNA polymerase subunit E' [Ar... 58 5e-07
emb|CAD25706.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNI... 57 9e-07
gb|AAW26843.1| unknown [Schistosoma japonicum] 57 9e-07
gb|EAQ90912.1| conserved hypothetical protein [Chaetomium g... 57 1e-06
emb|CAG90338.1| unnamed protein product [Debaryomyces hanse... 56 2e-06
gb|AAF59550.1| Hypothetical protein Y54E10BR.6 [Caenorhabdi... 56 2e-06
ref|XP_718437.1| putative RNA polymerase II core complex su... 56 2e-06
gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypepti... 56 2e-06
emb|CAE60566.1| Hypothetical protein CBG04195 [Caenorhabdit... 55 3e-06
ref|XP_780458.1| PREDICTED: similar to polymerase (RNA) II ... 55 4e-06
ref|XP_726413.1| RNA polymerase II subunit 7 [Plasmodium yo... 55 5e-06
gb|EAA00949.2| ENSANGP00000017695 [Anopheles gambiae str. P... 54 6e-06
ref|NP_001017065.1| hypothetical protein LOC549819 [Xenopus... 54 6e-06
emb|CAE76471.1| probable DNA-directed RNA polymerase II cha... 54 8e-06
ref|NP_731983.1| Rpb7 CG31155-PA [Drosophila melanogaster] ... 52 2e-05
gb|EAL28877.1| GA16051-PA [Drosophila pseudoobscura] 52 2e-05
gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypepti... 52 2e-05
ref|XP_624976.1| PREDICTED: similar to GA16051-PA, partial ... 52 4e-05
ref|XP_452500.1| unnamed protein product [Kluyveromyces lac... 51 5e-05
emb|CAB52145.1| SPAPYUK71.02 [Schizosaccharomyces pombe] >g... 51 5e-05
gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895] >gi|45... 50 1e-04
emb|CAI73822.1| DNA-directed RNA polymerase ii, putative [T... 49 2e-04
ref|XP_685945.1| PREDICTED: similar to polymerase (RNA) II ... 49 2e-04
gb|AAG20209.1| DNA-directed RNA polymerase subunit E'; RpoE... 47 7e-04
gb|EAM94489.1| DNA-directed RNA polymerase [Ferroplasma aci... 47 7e-04
gb|AAM02664.1| DNA-directed RNA polymerase subunit E' [Meth... 47 0.001
ref|ZP_01154036.1| DNA-directed RNA polymerase [Methanosaet... 47 0.001
emb|CAG60697.1| unnamed protein product [Candida glabrata C... 46 0.002
emb|CAG59010.1| unnamed protein product [Candida glabrata C... 46 0.002
ref|NP_010692.1| RNA polymerase II subunit B16; forms two s... 46 0.002
dbj|BAA31033.1| 188aa long hypothetical DNA-directed RNA po... 45 0.003
ref|YP_447665.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]... 45 0.003
gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Me... 45 0.003
dbj|BAD85888.1| DNA-directed RNA polymerase, subunit E' [Th... 45 0.003
ref|YP_331263.1| DNA-directed RNA polymerase subunit E' [Na... 44 0.006
ref|YP_137289.1| DNA-directed RNA polymerase subunit E' [Ha... 44 0.006
ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella... 44 0.006
gb|AAR39219.1| NEQ370 [Nanoarchaeum equitans Kin4-M] >gi|41... 44 0.008
gb|AAL80380.1| DNA-directed RNA polymerase, subunit e'; (rp... 44 0.008
emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit ... 44 0.011
ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus f... 44 0.011
gb|AAY80201.1| DNA-directed RNA polymerase subunit E [Sulfo... 44 0.011
gb|AAK40742.1| DNA-directed RNA polymerase, subunit E' (rpo... 43 0.014
ref|NP_113115.1| RNA polymerase II RPB7 subunit-like protei... 43 0.018
dbj|BAB65360.1| 183aa long hypothetical DNA-directed RNA po... 42 0.024
emb|CAA53164.1| DNA-directed RNA polymerase [Sulfolobus aci... 42 0.031
ref|YP_142730.1| unknown [Acanthamoeba polyphaga mimivirus]... 42 0.031
gb|AAT43451.1| DNA-directed RNA polymerase subunit E' [Picr... 41 0.053
ref|XP_454570.1| unnamed protein product [Kluyveromyces lac... 40 0.090
ref|YP_504274.1| DNA-directed RNA polymerase [Methanospiril... 40 0.12
gb|AAL65004.1| DNA-directed RNA polymerase subunit E' (rpoE... 40 0.15
emb|CAA20136.1| rpb7 [Schizosaccharomyces pombe] 40 0.15
ref|NP_912165.1| putative DNA-directed RNA polymerase III s... 39 0.20
emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae] >gi|396435... 39 0.26
gb|AAS51276.1| ACR049Wp [Ashbya gossypii ATCC 10895] >gi|45... 39 0.26
ref|XP_502697.1| hypothetical protein [Yarrowia lipolytica]... 39 0.26
gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E [Meth... 39 0.26
emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Met... 39 0.26
gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Meth... 39 0.26
ref|NP_632620.1| DNA-directed RNA polymerase subunit E' [Me... 39 0.26
ref|ZP_00563695.1| DNA-directed RNA polymerase [Methanococc... 39 0.34
dbj|BAA79171.1| 186aa long hypothetical DNA-directed RNA po... 39 0.34
ref|XP_385778.1| hypothetical protein FG05602.1 [Gibberella... 38 0.58
ref|XP_644642.1| hypothetical protein DDB0217175 [Dictyoste... 37 0.76
dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae] 37 0.99
emb|CAG87863.1| unnamed protein product [Debaryomyces hanse... 36 1.7
ref|XP_715928.1| RNA polymerase III subunit [Candida albica... 36 2.2
ref|XP_656629.1| DNA-directed RNA polymerase III subunit [E... 36 2.2
gb|EAQ86888.1| hypothetical protein CHGG_08141 [Chaetomium ... 35 2.9
ref|ZP_00853373.1| hypothetical protein Shewmr7DRAFT_3693 [... 35 2.9
ref|ZP_00851778.1| hypothetical protein Shewana3DRAFT_1071 ... 35 2.9
ref|ZP_00880909.1| hypothetical protein Shewmr4DRAFT_2291 [... 35 2.9
gb|EAL18546.1| hypothetical protein CNBJ1880 [Cryptococcus ... 35 2.9
gb|AAW51402.1| GekBS086P [Gekko japonicus] 35 3.8
emb|CAD70761.1| probable serine/threonine protein kinase (S... 34 6.4
gb|EAA00210.2| ENSANGP00000009179 [Anopheles gambiae str. P... 34 6.4
gb|AAD43341.1| serine threonine protein kinase SNF1p [Cochl... 34 8.4
ref|XP_965434.1| hypothetical protein [Neurospora crassa N1... 34 8.4
gb|EAR97264.1| hypothetical protein TTHERM_00334410 [Tetrah... 34 8.4
>ref|XP_475606.1| putative RNA polymerase II fifth largest subunit [Oryza sativa
(japonica cultivar-group)]
gb|AAS55764.1| putative RNA polymerase II [Oryza sativa (japonica cultivar-group)]
Length = 175
Score = 302 bits (773), Expect = 1e-80
Identities = 145/175 (82%), Positives = 168/175 (96%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
MVFL+ EMS NVLISPSQL +GLLLRKA+IVRLLED+ +R+ASK+HGYYIAV++LKAIS
Sbjct: 1 MVFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAIS 60
Query: 600 EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMS 421
EGKVRELTGDVLFPV+FTCITQKPMKGEV+VG VD+ILKHG+FLKSGP+ESIFL+EK+MS
Sbjct: 61 EGKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTMS 120
Query: 420 NYKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
++KYIGGENA+FMN+HSKLEKDT VRFKV+GFRWMEADRQFQLLAT+AGD+LGPL
Sbjct: 121 DFKYIGGENAVFMNEHSKLEKDTVVRFKVMGFRWMEADRQFQLLATLAGDYLGPL 175
>gb|AAS98454.2| putative receptor kinase [Oryza sativa (japonica cultivar-group)]
Length = 715
Score = 294 bits (753), Expect = 3e-78
Identities = 141/175 (80%), Positives = 164/175 (93%)
Frame = -1
Query: 792 RYSAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQL 613
R SAMVFL+ +MSWNVLISPS+L KGLLLRKA+IV LLE++ +R+ASK+HGYYIAV++L
Sbjct: 32 RQSAMVFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSEL 91
Query: 612 KAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAE 433
KAISEGKVRELTGDVLFPV+FTCITQKP KGE++VG VD+ILKHGVFLKSGP+ESIFL+E
Sbjct: 92 KAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSE 151
Query: 432 KSMSNYKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDF 268
K++S+YKYIGGEN MFMNDHSKLEKDTAVRFKV+GFRWMEADRQFQ+LAT+A F
Sbjct: 152 KTLSDYKYIGGENPMFMNDHSKLEKDTAVRFKVMGFRWMEADRQFQILATLAAMF 206
>ref|XP_476209.1| putative receptor kinase [Oryza sativa (japonica cultivar-group)]
Length = 680
Score = 290 bits (741), Expect = 7e-77
Identities = 138/171 (80%), Positives = 161/171 (94%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
MVFL+ +MSWNVLISPS+L KGLLLRKA+IV LLE++ +R+ASK+HGYYIAV++LKAIS
Sbjct: 1 MVFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAIS 60
Query: 600 EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMS 421
EGKVRELTGDVLFPV+FTCITQKP KGE++VG VD+ILKHGVFLKSGP+ESIFL+EK++S
Sbjct: 61 EGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLS 120
Query: 420 NYKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDF 268
+YKYIGGEN MFMNDHSKLEKDTAVRFKV+GFRWMEADRQFQ+LAT+A F
Sbjct: 121 DYKYIGGENPMFMNDHSKLEKDTAVRFKVMGFRWMEADRQFQILATLAAMF 171
>ref|NP_193202.2| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 178
Score = 190 bits (483), Expect = 5e-47
Identities = 88/175 (50%), Positives = 131/175 (74%), Gaps = 1/175 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 61 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120
Query: 417 YKYIGGENAMFMNDH-SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
YKYI GEN +FMN+ S+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 175
>emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 175 bits (443), Expect = 2e-42
Identities = 82/158 (51%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Frame = -1
Query: 726 LDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFT 547
+D KGL+L++AI+V LLE ++A+KE GYY+AV L I EGK+RE TG+VLFPV F+
Sbjct: 1 MDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFS 60
Query: 546 CITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH-S 370
+T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +YKYI GEN +FMN+ S
Sbjct: 61 GMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTS 120
Query: 369 KLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 121 RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 158
>ref|NP_566719.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 174
Score = 147 bits (371), Expect = 5e-34
Identities = 77/174 (44%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F++ ++ W+V I +D GL+L++AI++RLLE + +A+K+ GY I L+ I E
Sbjct: 1 MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 59
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK++E TG++ FPV F I K KGE++ G V ++ K GVFLKSGP E I+L+ M
Sbjct: 60 GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 119
Query: 417 YKYIGGENAMFMNDH-SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
Y++I GEN FMN + S+++ VRF VL W EA++ F LA+I GD LGP
Sbjct: 120 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173
>dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 138 bits (347), Expect = 3e-31
Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = -1
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 4 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 63
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH-SKLEK 358
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN + S+++
Sbjct: 64 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQI 123
Query: 357 DTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
VRF VL W EA++ F LA+I GD LGP
Sbjct: 124 GARVRFVVLDTEWREAEKDFMALASIDGDNLGP 156
>ref|NP_193188.2| RNA binding [Arabidopsis thaliana]
ref|NP_849385.1| RNA binding [Arabidopsis thaliana]
gb|AAS47648.1| At4g14520 [Arabidopsis thaliana]
gb|AAR24714.1| At4g14520 [Arabidopsis thaliana]
Length = 200
Score = 100 bits (248), Expect = 1e-19
Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F E EM+ +V I L+ G + I+ RLL+D+ H +A +EHG+Y+ + LK+I
Sbjct: 1 MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 58
Query: 597 GKVRELTGD-------VLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFL 439
K + + + FPVSFTC T P +G+++ G V ++L +G F++SGP+ +L
Sbjct: 59 NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 118
Query: 438 AEKSMSNYKYIGG-----ENAMFMNDH-SKLEKDTAVRFKVLGFRWMEADRQ----FQLL 289
+ M +Y Y+ E F D SK+ VRF+VL R+ E + + +L
Sbjct: 119 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 178
Query: 288 ATIAGD-FLGPL 256
AT+ G+ GP+
Sbjct: 179 ATLEGNGSFGPI 190
>emb|CAB10231.1| hypothetical protein [Arabidopsis thaliana]
emb|CAB78494.1| hypothetical protein [Arabidopsis thaliana]
Length = 194
Score = 94.4 bits (233), Expect = 5e-18
Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 18/164 (10%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD-------VLFPVSFTCITQ 535
I+ RLL+D+ H +A +EHG+Y+ + LK+I K + + + FPVSFTC T
Sbjct: 21 ILCRLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNENNHQAKILTFPVSFTCRTF 80
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGG-----ENAMFMNDH- 373
P +G+++ G V ++L +G F++SGP+ +L+ M +Y Y+ E F D
Sbjct: 81 LPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYHYVHSPLSEDEKPHFQKDDL 140
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQ----FQLLATIAGD-FLGPL 256
SK+ VRF+VL R+ E + + +LAT+ G+ GP+
Sbjct: 141 SKIAVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSFGPI 184
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II 19 kDa polypeptide (RNA polymerase
II subunit 5)
gb|AAA34005.1| RNA polymerase II
Length = 176
Score = 82.8 bits (203), Expect = 2e-14
Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P R LR ++ +L++DV S HG+ +AV ++ I +
Sbjct: 1 MFFHIVLERNMQLHPRYFGRN---LRDNLVSKLMKDV-EGTCSGRHGFVVAVTGIENIGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +R+ TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++KD+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLG 168
>gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa (japonica
cultivar-group)]
Length = 177
Score = 82.0 bits (201), Expect = 3e-14
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P G LR ++ +L++DV S HG+ +A+ ++ + +
Sbjct: 1 MFFHIVLERNMQLHPRHF---GPHLRDKLVSKLIKDV-EGTCSGRHGFVVAITGVEDVGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +RE TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++KD+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLG 168
>ref|NP_200726.1| DNA-directed RNA polymerase/ RNA binding [Arabidopsis thaliana]
gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II 19 kDa polypeptide (RNA polymerase
II subunit 5)
gb|AAA32861.1| RNA polymerase II
Length = 176
Score = 78.2 bits (191), Expect = 4e-13
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ + P R L++ ++ +L++DV S HG+ +A+ + I +
Sbjct: 1 MFFHIVLERNMQLHPRFFGRN---LKENLVSKLMKDV-EGTCSGRHGFVVAITGIDTIGK 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G +R+ TG V FPV + C+ +P KGE++ V + K G F ++GPV+ +
Sbjct: 57 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDD 116
Query: 417 YKYIGGE--NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ G+ N + K++K+ VR K++G R ++A F + TI DFLG
Sbjct: 117 MEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLG 168
>gb|AAW43188.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_570495.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
Length = 172
Score = 77.0 bits (188), Expect = 9e-13
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F E++ +L+ PS G L + +L EDV S +HGY I+V + I E
Sbjct: 1 MFFLRELTHTILLHPSYF---GAQLEDYLRQKLYEDV-EGTCSGKHGYIISVITITDIGE 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+ TG F +T I KP KGEV+ V + K G F GP++ + S+
Sbjct: 57 GKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKMGFFAMVGPLQVFVSCHLTHSD 116
Query: 417 YKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
K+ + + ++ ++KDT VR +++G R +EA+ F + TI D+LG +
Sbjct: 117 MKFDPSVSPPCYRSNDEIIQKDTKVRIQIVGCR-VEANDMF-AIGTIKKDYLGQI 169
>gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 169
Score = 72.0 bits (175), Expect = 3e-11
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F E++ +L+ PS G L + +L EDV S +HGY I+V + I E
Sbjct: 1 MFFLRELTHTILLHPSYF---GAQLEDYLRQKLYEDV-EGTCSGKHGYIISVITITDIGE 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+ TG F +T I KP KGEV+ +++ G F GP++ + S+
Sbjct: 57 GKIIPSTGQAKFKTRYTAIVMKPFKGEVVDA---KVVNMGFFAMVGPLQVFVSCHLTHSD 113
Query: 417 YKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
K+ + + ++ ++KDT VR +++G R +EA+ F + TI D+LG +
Sbjct: 114 MKFDPSVSPPCYRSNDEIIQKDTKVRIQIVGCR-VEANDMF-AIGTIKKDYLGQI 166
>gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum]
Length = 175
Score = 68.6 bits (166), Expect = 3e-10
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F ++ +L+ P G L + + +L DV S ++G+ IAV ++ I
Sbjct: 1 MFYHIKLEHEILLHPKYF---GPNLTETVKTKLFSDV-EGTCSGKYGFIIAVTNIEHIGA 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-S 421
G ++ G V + + + I +P KGEV+ V ++ K GVF ++GP+ +IF+++ S+ S
Sbjct: 57 GIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPL-TIFISKYSVPS 115
Query: 420 NYKYIGGENAM-FMNDHSKLEKDTA-----VRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
N K+ G E +ND + E T +R +++G R +D + T+ D+LGP
Sbjct: 116 NIKFEGAETTTDGLNDDDEEESQTVQIEDRIRIRIIGLRVDASD--IFAVGTLMDDYLGP 173
>ref|XP_679476.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
ref|XP_737810.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
emb|CAH85055.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi]
emb|CAI04363.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 177
Score = 63.5 bits (153), Expect = 1e-08
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Frame = -1
Query: 750 NVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD 571
NV+I PSQL K + I +L + + ++++GY I V ++ G+V++ TG
Sbjct: 10 NVIIKPSQLGPK----YQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQDGTGM 65
Query: 570 VLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNY-KYI-GGE 397
++ V + I KP K EV+ V + K G F ++GP++ IF++ ++ Y +Y
Sbjct: 66 IVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPKYFEYTEDAH 124
Query: 396 NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
F + ++ T VR K+ G R+ + F +ATI ++LG
Sbjct: 125 YPCFSSGSHNIKPQTTVRLKLQGIRY-DLSNMF-AIATINNEYLG 167
>ref|XP_639913.1| RNA polymerase II core subunit [Dictyostelium discoideum]
gb|EAL64909.1| RNA polymerase II core subunit [Dictyostelium discoideum]
Length = 172
Score = 62.4 bits (150), Expect = 2e-08
Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Frame = -1
Query: 642 HGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKS 463
+G+ I + + +S+GKV E +G V+F V + I KP KGEV+ V ++ G F ++
Sbjct: 42 YGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEA 101
Query: 462 GPVESIFLAEKSMSNYKYIGGENAM--FMND--HSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ SIF++ + + + ++A+ F+++ SK+ KD VR ++ G R ++A F
Sbjct: 102 GPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTR-VDATEIF- 158
Query: 294 LLATIAGDFLG 262
+ +I D+LG
Sbjct: 159 AIGSIREDYLG 169
>dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae]
Length = 169
Score = 62.0 bits (149), Expect = 3e-08
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 3/178 (1%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
M FL+ E + + PS G +R+ +I RL E+ R + +H + I V + I
Sbjct: 1 MFFLKEETKV-ITLHPSYF---GPNVREYLINRLNEE-EEGRCTGDH-FVICVMDMVDIG 54
Query: 600 EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM- 424
EG+V +G + + + I KP +GE + V + G+F +GP+ S+F+A K++
Sbjct: 55 EGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARKNIP 113
Query: 423 SNYKYIGGENAMFMNDHSK--LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+ K+ DH+ +EK T++R K+LG + A + TI D+LGPL
Sbjct: 114 SDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGPL 169
>gb|AAN35466.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
ref|NP_700742.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 177
Score = 61.2 bits (147), Expect = 5e-08
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Frame = -1
Query: 750 NVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD 571
NV+I PSQL + + I +L + + S ++GY I V ++ G+V++ TG
Sbjct: 10 NVIIKPSQLGPR----YQQYIEDMLRNSVEGQCSVKYGYVICVIRIIHSEPGRVQDGTGM 65
Query: 570 VLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGE-- 397
++ V + I KP K EV+ V + K G F ++GP++ IF++ ++ Y +
Sbjct: 66 IVVKVKYQAIVFKPFKDEVLDAIVTDVNKLGFFAQAGPLK-IFISRTAIPKYFEYSEDLH 124
Query: 396 NAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
F + ++ T VR K+ G R+ + F +ATI ++LG
Sbjct: 125 YPCFSSGDYNIKPQTTVRIKLQGIRY-DLSNMF-AIATINNEYLG 167
>ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
gb|EAK86583.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
Length = 170
Score = 61.2 bits (147), Expect = 5e-08
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Frame = -1
Query: 678 LEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHV 499
L D + +HGY I V L + +GKV +G F ++ + KP KGEVM +
Sbjct: 30 LRDDVEGTCTGKHGYIIKVIGLVDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKI 89
Query: 498 DRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFR 322
+ K G F + GP+ + YK+ N F++ +L K VR K++G R
Sbjct: 90 TNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQPESNPPEFVSASDRLVKGRKVRIKIVGTR 149
Query: 321 WMEADRQFQLLATIAGDFLGP 259
++A+ F + T+ D+LGP
Sbjct: 150 -VDANEIF-AIGTMKEDYLGP 168
>ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gb|EAA63777.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
Length = 169
Score = 59.7 bits (143), Expect = 1e-07
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 3/178 (1%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
M FL+ E + + PS G +R+ +I RL E+ R + +H + I V + I
Sbjct: 1 MFFLKEETKV-ITLHPSYF---GPNVREYLINRLNEE-EEGRCTGDH-FVICVMDMVDIG 54
Query: 600 EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM- 424
EG+V G + + + I KP +GE + V + G+F +GP+ S+F+A K++
Sbjct: 55 EGRVLPGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKPTGIFTLAGPL-SVFIARKNIP 113
Query: 423 SNYKYIGGENAMFMNDHSK--LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+ ++ DH+ +EK T++R K+LG + A + TI D+LGPL
Sbjct: 114 SDIRWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA--AINAIGTIKEDYLGPL 169
>ref|NP_069946.1| DNA-directed RNA polymerase subunit E' [Archaeoglobus fulgidus DSM
4304]
gb|AAB90126.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Archaeoglobus
fulgidus DSM 4304]
Length = 189
Score = 57.8 bits (138), Expect = 5e-07
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
+I LL + R +E+G I + ++ I EG++ E G V F V F I +P+ EV
Sbjct: 25 VINSLLWEQFEGRLDREYGMIIGIESIEEIGEGRIIEGDGGVYFDVVFNAICFRPLHQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVRF 340
+ G V I++ G F+ GP +++ + +Y +N + +K L++ VR
Sbjct: 85 VEGEVIEIVEFGAFVSIGPFDALLHMSQVTDDYMVFDEKNKRLVGRETKKVLQEGDKVRA 144
Query: 339 KVLGFRWMEAD-RQFQLLATIAGDFLGPL 256
+++ E + + ++ T+ +LG L
Sbjct: 145 RIVSLSLKEREPEKSKIGLTMRQPWLGAL 173
>emb|CAD25706.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
ref|NP_586102.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 155
Score = 57.0 bits (136), Expect = 9e-07
Identities = 47/172 (27%), Positives = 87/172 (50%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + N+ +SP+ L G ++ I LL V +S GY + V + ISE
Sbjct: 1 MFFVRDFVQNIHLSPNYL---GPNIQALIEEYLLSKVEGSCSSS--GYVVMVLSIDEISE 55
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
++ LTG+ +F V + +T KP+KGEV+ +V K GVF GP+ ++F++ + N
Sbjct: 56 SRII-LTGETIFTVKYKALTLKPLKGEVIDANVVETNKMGVFASVGPL-TVFISNHQIPN 113
Query: 417 YKYIGGENAMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ +++ K+ +R K++G + +++ R + + T+ D LG
Sbjct: 114 FLL-----------ENEITKNVMIRLKIIGTK-IDSTRIY-AVGTLNDDSLG 152
>gb|AAW26843.1| unknown [Schistosoma japonicum]
Length = 157
Score = 57.0 bits (136), Expect = 9e-07
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F ++ +L+ P G L + + +L DV S ++G+ IAV ++ I
Sbjct: 1 MFYHIKLEHEILLHPKYF---GPNLTETVKTKLFSDV-EGTCSGKYGFIIAVTNIEHIGA 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-S 421
G ++ G V + + + I +P KGEV+ V ++ K GVF ++GP+ +IF+++ S+ S
Sbjct: 57 GIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVTQVTKVGVFAEAGPL-TIFISKYSVPS 115
Query: 420 NYKYIGGE 397
N K+ G E
Sbjct: 116 NIKFEGAE 123
>gb|EAQ90912.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 202
Score = 56.6 bits (135), Expect = 1e-06
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 2/174 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + PS R + + + +L++DV A Y IA+ +SE
Sbjct: 1 MFFLHNLERRVTLHPSYFGRN---MHELVTTKLVKDVEGTCAGDY--YIIAIMDTFDVSE 55
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G++ +G F V + + +P KGEV+ + HG F ++GP+ +
Sbjct: 56 GRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQTVNPHGFFAQAGPLRLFVSSHLMPDE 115
Query: 417 YKY-IGGENAMFMNDHS-KLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+Y A F N+ +E+ T VR K++G R + + +I GDFLG
Sbjct: 116 IQYDASATPAQFTNNADIVIEQGTHVRVKIIGLRTEVG--EMWAIGSINGDFLG 167
>emb|CAG90338.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_461875.1| hypothetical protein DEHA0G08195g [Debaryomyces hansenii CBS767]
Length = 173
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F ++S N+ + PS G + + + +LL DV + + GY + V I
Sbjct: 1 MFFLKDLSLNLTLHPSYF---GPQMDQYLRDKLLSDV-EGTCTGQFGYIVCVLDCMNIDV 56
Query: 597 GKVRELTGDVL--FPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
GK R + G + F V + + KP KGEV+ V + K G F GP+
Sbjct: 57 GKGRVIPGSGVAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIP 116
Query: 423 SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
S+ K+ N +++ +EK + VR K++G R + + +I D+LGP
Sbjct: 117 SDMKFNPSANPPAYVSPDENIEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gb|AAF59550.1| Hypothetical protein Y54E10BR.6 [Caenorhabditis elegans]
ref|NP_491093.1| Y54E10BR.6 [Caenorhabditis elegans]
Length = 197
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + P G L + I ++L +V K +G+ IAV + I
Sbjct: 24 MFFHLSLDHEVCLHPKYF---GPNLNETIKMKLFNEVEGTCTGK-YGFVIAVTTIDTIGH 79
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-- 424
G ++ G V++PV + I +P KG+V+ G V ++ K G+F GP+ S F++ +
Sbjct: 80 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPL-SCFISRHCIPP 138
Query: 423 -SNYKYIGGENAMFMNDHSK-LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + ND + + D +R K++G R ++A+ F + T+ DFLG
Sbjct: 139 DMEFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDFLG 192
>ref|XP_718437.1| putative RNA polymerase II core complex subunit [Candida albicans
SC5314]
ref|XP_718170.1| putative RNA polymerase II core complex subunit [Candida albicans
SC5314]
gb|AAK00627.1| RNA polymerase II subunit 7 [Candida albicans]
gb|EAK99511.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gb|EAK99238.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
Length = 173
Score = 55.8 bits (133), Expect = 2e-06
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F ++S N+ + PS G + + + +LL DV + + GY + V I
Sbjct: 1 MFFLKDLSLNLTLHPSFF---GPQMDQYLREKLLSDV-EGTCTGQFGYIVCVLDSMNIDV 56
Query: 597 GKVREL--TGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
GK R + TG F V + + KP KGEV+ V + K G F GP+
Sbjct: 57 GKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIP 116
Query: 423 SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGP 259
S+ K+ N +++ +EK + VR K++G R + + +I D+LGP
Sbjct: 117 SDMKFNPSANPPAYVSPDENIEKGSRVRLKIVGTR--TDVNEIYAIGSIKEDYLGP 170
>gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gb|AAH60595.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
ref|NP_080605.1| polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gb|AAB96827.1| RNA polymerase II seventh subunit [Homo sapiens]
gb|AAH55278.1| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
ref|XP_533260.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide G [Canis familiaris]
ref|NP_001015633.1| polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
gb|AAH05580.3| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
dbj|BAB27119.1| unnamed protein product [Mus musculus]
dbj|BAB28670.1| unnamed protein product [Mus musculus]
dbj|BAB27743.1| unnamed protein product [Mus musculus]
dbj|BAB30760.1| unnamed protein product [Mus musculus]
ref|NP_446400.1| polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gb|AAI12165.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gb|AAI12163.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
gb|AAX09019.1| DNA directed RNA polymerase II polypeptide G [Bos taurus]
sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
emb|CAA96468.1| RNA polymerase II RPB7 subunit-like protein [Rattus norvegicus]
ref|NP_002687.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
sp|P62489|RPB7_RAT DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
gb|AAA86500.1| RNA polymerase II subunit hsRPB7
prf||2115374A RNA polymerase II
Length = 172
Score = 55.8 bits (133), Expect = 2e-06
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F +
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 100
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N M++ +++D +R K++G R + D
Sbjct: 101 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND--IF 158
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 159 AIGSLMDDYLG 169
>emb|CAE60566.1| Hypothetical protein CBG04195 [Caenorhabditis briggsae]
Length = 197
Score = 55.5 bits (132), Expect = 3e-06
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + P G L + I +L +V K +G+ IAV + I
Sbjct: 24 MFFHLSLDHEVCLHPKYF---GPNLNETIKAKLFNEVEGTCTGK-YGFVIAVTTIDTIGH 79
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-- 424
G ++ G V++PV + I +P KG+V+ G V ++ K G+F GP+ S F++ +
Sbjct: 80 GLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPL-SCFISRHCIPP 138
Query: 423 -SNYKYIGGENAMFMNDHSK-LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + ND + + D +R K++G R ++A+ F + T+ DFLG
Sbjct: 139 DMEFDPNSEKPCYKTNDEATVIRNDDEIRVKLIGTR-VDANDIF-AIGTLMDDFLG 192
>ref|XP_780458.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide G [Strongylocentrotus purpuratus]
Length = 172
Score = 55.1 bits (131), Expect = 4e-06
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + +L+ P G L + +L +V K +G+ IAV + I
Sbjct: 1 MFYHVSLEHEILLHPRYF---GPNLLNTVKQKLFTEVEGTCTGK-YGFVIAVTTIDNIGA 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G ++ G VL+PV + I +P KGEV+ V ++ K G+F GP+ S F++ S+
Sbjct: 57 GMIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTDIGPL-SCFISRHSIPA 115
Query: 417 YKYIGGENA----MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ ++ +++D +R K++G R +D + T+ DFLG
Sbjct: 116 DMEFDPNSSPPCYKTKDEDIVIQQDDEIRLKIVGTRVDASD--IFAIGTLMDDFLG 169
>ref|XP_726413.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii str. 17XNL]
gb|EAA17978.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii]
Length = 193
Score = 54.7 bits (130), Expect = 5e-06
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Frame = -1
Query: 750 NVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGD 571
NV+I PSQL K + I +L + + ++++GY I V ++ G+V++ TG
Sbjct: 10 NVIIKPSQLGPK----YQQYIEDMLRNSIEGQCTEKYGYIICVIRIMHSEPGRVQDGTGM 65
Query: 570 VLFPVSFTCITQKPMKGEVMV----------------GHVDRILKHGVFLKSGPVESIFL 439
++ V + I KP K EV+ V + K G F ++GP++ IF+
Sbjct: 66 IVVKVKYQAIVFKPFKDEVLFKINKLINKLIKSFVLDAIVTDVNKLGFFAQAGPLK-IFI 124
Query: 438 AEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDF 268
+ ++ Y + E+A F + ++ T VR K+ G R+ + F +ATI ++
Sbjct: 125 SRTAIPKY-FEYNEDAHYPCFSSGSHNIKPQTTVRLKLQGIRY-DLSNMF-AIATINNEY 181
Query: 267 LG 262
LG
Sbjct: 182 LG 183
>gb|EAA00949.2| ENSANGP00000017695 [Anopheles gambiae str. PEST]
ref|XP_320916.2| ENSANGP00000017695 [Anopheles gambiae str. PEST]
Length = 173
Score = 54.3 bits (129), Expect = 6e-06
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G V++PV + I +P KGEV+ V ++ K G+F +
Sbjct: 41 KYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAE 100
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA----MFMNDHSKLEKDTAVRFKVLGFRWMEADRQF 298
GP+ S F++ S+ A +N S + + +R K++G R ++A F
Sbjct: 101 IGPL-SCFISHHSIPADMQFCPNGAPPCYRAINGESVIAAEDKIRLKIVGTR-VDATGIF 158
Query: 297 QLLATIAGDFLG 262
+ T+ D+LG
Sbjct: 159 -AIGTLMDDYLG 169
>ref|NP_001017065.1| hypothetical protein LOC549819 [Xenopus tropicalis]
ref|XP_702073.1| PREDICTED: hypothetical protein XP_696981 [Danio rerio]
gb|AAH45299.1| Polymerase (RNA) II (DNA directed) polypeptide G [Danio rerio]
emb|CAJ83494.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
tropicalis]
sp|Q7ZW41|RPB7_BRARE DNA-directed RNA polymerase II 19 kDa polypeptide (RPB7)
ref|NP_955963.1| polymerase (RNA) II (DNA directed) polypeptide G [Danio rerio]
Length = 172
Score = 54.3 bits (129), Expect = 6e-06
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F +
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 100
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N +++ +++D +R K++G R + D
Sbjct: 101 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKND--IF 158
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 159 AIGSLMDDYLG 169
>emb|CAE76471.1| probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 53.9 bits (128), Expect = 8e-06
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + PS R + + + +L++DV A Y IA+ +SE
Sbjct: 1 MFFLHNLERRVTLHPSYFGRN---MHELVTTKLVKDVEGTCAGDY--YIIAIMDAFDVSE 55
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G++ G F V + + +P KGEV+ V I HG F ++GP+ SIF++ M
Sbjct: 56 GRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPL-SIFVSSHLMPE 114
Query: 417 YKYI--GGENAMFMNDHSK-LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ F N+ +E T VR K+ G R + + +I GDFLG
Sbjct: 115 EIHFDPNATPPQFTNNADMVIEPGTHVRVKIGGLRTELG--EMYAIGSINGDFLG 167
>ref|NP_731983.1| Rpb7 CG31155-PA [Drosophila melanogaster]
gb|AAY55728.1| IP02321p [Drosophila melanogaster]
gb|AAF55145.2| CG31155-PA [Drosophila melanogaster]
Length = 173
Score = 52.4 bits (124), Expect = 2e-05
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Frame = -1
Query: 726 LDRKGLLLRKAIIVRLLEDVTHRRASK-------EHGYYIAVNQLKAISEGKVRELTGDV 568
L+++ LL + +LLE V + S+ ++G+ IAV + I G ++ G V
Sbjct: 7 LEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQPGQGFV 66
Query: 567 LFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-SNYKYIGGENA 391
++PV + I +P KGEV+ V +I K G+F + GP+ S F++ S+ ++ ++ N
Sbjct: 67 VYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPL-SCFISHHSIPADMQFCPNGNP 125
Query: 390 MFMNDHSK---LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + + +R K++G R ++A F + T+ D+LG
Sbjct: 126 PCYKSKDEDVVISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gb|EAL28877.1| GA16051-PA [Drosophila pseudoobscura]
Length = 173
Score = 52.4 bits (124), Expect = 2e-05
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + +L+ P G L + + +L +V K +G+ IAV + I
Sbjct: 1 MFYHISLEHEILLHPRYF---GPQLLETVKQKLYSEVEGTCTGK-YGFVIAVTTIDQIGS 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-S 421
G ++ G V++PV + I +P KGEV+ V +I K G+F + GP+ S F++ S+ +
Sbjct: 57 GVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPL-SCFISHHSIPA 115
Query: 420 NYKYIGGENAMFMNDHSK---LEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ ++ N + + + +R K++G R ++A F + T+ D+LG
Sbjct: 116 DMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTR-VDATGIF-AIGTLMDDYLG 169
>gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
Length = 172
Score = 52.4 bits (124), Expect = 2e-05
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Frame = -1
Query: 636 YYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGP 457
+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ K G+F + GP
Sbjct: 44 FVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGP 103
Query: 456 VESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLA 286
+ S ++ N M++ +++D +R K++G R + D +
Sbjct: 104 MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND--IFAIG 161
Query: 285 TIAGDFLG 262
++ D+LG
Sbjct: 162 SLMDDYLG 169
>ref|XP_624976.1| PREDICTED: similar to GA16051-PA, partial [Apis mellifera]
Length = 169
Score = 51.6 bits (122), Expect = 4e-05
Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ +AV + I G ++ G V++PV + I +P KGEV+ V ++ K G+F +
Sbjct: 37 KYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAE 96
Query: 465 SGPVESIFLAEKSM-SNYKYIGGENAMFMNDHSK---LEKDTAVRFKVLGFRWMEADRQF 298
GP+ S F++ S+ ++ ++ N + ++ D +R K++G R ++A F
Sbjct: 97 IGPL-SCFISHHSIPADMQFCPNINPPCYKTKEEDVIIQPDDEIRLKIVGTR-VDATGIF 154
Query: 297 QLLATIAGDFLG 262
+ T+ D+LG
Sbjct: 155 -AIGTLMDDYLG 165
>ref|XP_452500.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH01351.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 171
Score = 51.2 bits (121), Expect = 5e-05
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLK--AI 604
+F ++S N+ + PS G +++ ++ +LL++V K GY + V + I
Sbjct: 1 MFFFKDLSLNITLHPSFF---GPQMKRYLMTKLLQEVEGTCTGK-FGYILCVLDCENIEI 56
Query: 603 SEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
G++ G F V + + KP KGEV+ G V G ++ GP+ S+F++ M
Sbjct: 57 ERGRILPTDGSAEFTVKYRAVVWKPFKGEVLDGIVSSCTNLGFEVEVGPL-SVFVSPFLM 115
Query: 423 -SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + G N + + + K + VR K++G R + +I D+LG
Sbjct: 116 PEDLTFNSGSNPPSYQSSEQIITKGSRVRLKIVGAR--SEVNSIYAIGSIKEDYLG 169
>emb|CAB52145.1| SPAPYUK71.02 [Schizosaccharomyces pombe]
ref|NP_593972.1| hypotDNA-directed RNA polymerase II subunit [Schizosaccharomyces
pombe 972h-]
gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II 19 kDa polypeptide
dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
Length = 172
Score = 51.2 bits (121), Expect = 5e-05
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 3/178 (1%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
M F E+S + + PS G ++ + +LL DV S ++GY I V I
Sbjct: 1 MPFFLKELSLTISLHPSYF---GPRMQDYLKAKLLADV-EGTCSGQYGYIICVLDSNTID 56
Query: 600 EGKVRELTGDVL--FPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
K R + G F V + + +P +GEV+ V + K G F GP+ +
Sbjct: 57 IDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLV 116
Query: 426 MSNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ K+ N + + +EK + VR K++G R +A F +AT+ D+LG L
Sbjct: 117 PPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR-TDATEIF-AIATMKEDYLGVL 172
>gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
ref|NP_985949.1| AFR402Cp [Eremothecium gossypii]
Length = 171
Score = 50.1 bits (118), Expect = 1e-04
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAV--NQLKAI 604
+F ++S N+ + PS G +R+ + +LL++V K GY + V ++ I
Sbjct: 1 MFFFKDLSLNITLHPSYF---GPRMREYLKTKLLQEVEGTCTGK-FGYILCVLDSENIEI 56
Query: 603 SEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
G++ G F V + + KP KGEV+ G V G + GP+ S+F++ M
Sbjct: 57 ERGRILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPL-SVFVSPFLM 115
Query: 423 -SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
+ + G N + + + K + VR K++G R + +I D+LG
Sbjct: 116 PEDLTFNSGSNPPSYQSSEQIITKGSRVRLKIVGAR--SEVNSIYAIGSIKEDYLG 169
>emb|CAI73822.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
ref|XP_765752.1| DNA-directed RNA polymerase II subunit Rpb7 [Theileria parva strain
Muguga]
ref|XP_954499.1| DNA-directed RNA polymerase II [Theileria annulata strain Ankara]
gb|EAN33469.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Theileria
parva]
Length = 175
Score = 49.3 bits (116), Expect = 2e-04
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Frame = -1
Query: 690 IVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVM 511
I +L D + ++GY + V ++ G+V++ T ++ V + I KP K EV+
Sbjct: 26 IEEMLRDQVEGHCTNKYGYVVCVIRIVQNDMGRVQDGTAMIVVNVKYQAIVFKPFKDEVL 85
Query: 510 VGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHS-KLEKDTAVRFKV 334
V + K G F ++GP+++ N+ Y +D + ++ + VR ++
Sbjct: 86 DAIVTDVNKLGFFAQAGPLKAFVSRNSIHPNFVYDSDSAYPCYSDGTISIKPQSEVRMRL 145
Query: 333 LGFRWMEADRQFQLLATIAGDFLG 262
G ++ ++ +ATI D LG
Sbjct: 146 QGIKYDNSN--LFAIATINADHLG 167
>ref|XP_685945.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide G isoform 1 [Danio rerio]
Length = 169
Score = 49.3 bits (116), Expect = 2e-04
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK 466
++G+ IAV + I G ++ G VL+PV + I +P KGEV+ V ++ G+F +
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV---GLFTE 97
Query: 465 SGPVESIFLAEKSMSNYKYIGGENA---MFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQ 295
GP+ S ++ N +++ +++D +R K++G R + D
Sbjct: 98 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKND--IF 155
Query: 294 LLATIAGDFLG 262
+ ++ D+LG
Sbjct: 156 AIGSLMDDYLG 166
>gb|AAG20209.1| DNA-directed RNA polymerase subunit E'; RpoE' [Halobacterium sp.
NRC-1]
ref|NP_280729.1| DNA-directed RNA polymerase subunit E' [Halobacterium sp. NRC-1]
Length = 190
Score = 47.4 bits (111), Expect = 7e-04
Identities = 27/108 (25%), Positives = 47/108 (43%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
++ RLL+D R ++ G + V ++ + EG V V + F +T +P EV
Sbjct: 25 LVKRLLQDKLEGRMDEDVGSIVTVTEVHDLGEGAVLPNRPGVYYEAEFDAVTFEPEMQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHS 370
+ G V ++ G F+ GPV+ + + Y EN + S
Sbjct: 85 VDGEVVEVVSFGAFVGIGPVDGLLHVSQISDEYLAFDEENQQLASRES 132
>gb|EAM94489.1| DNA-directed RNA polymerase [Ferroplasma acidarmanus Fer1]
ref|ZP_00608948.1| DNA-directed RNA polymerase [Ferroplasma acidarmanus Fer1]
Length = 191
Score = 47.4 bits (111), Expect = 7e-04
Identities = 30/122 (24%), Positives = 54/122 (44%)
Frame = -1
Query: 699 KAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKG 520
K+ + L D+ + + Y ++VN ++ EG + G V + ++ + P
Sbjct: 31 KSTLEGKLVDIQEGQKNIGKSYIVSVNSIEMKGEGTIVHGDGGVYQSIKYSALAYFPKMH 90
Query: 519 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSKLEKDTAVRF 340
EV+ G V + K G F+K GP E + + M + I EN + SK+E +
Sbjct: 91 EVVDGIVVAVQKFGAFIKFGPFEGLLHISQIMDDAINIDMENQRIVGKDSKMELKVGDKI 150
Query: 339 KV 334
+V
Sbjct: 151 RV 152
>gb|AAM02664.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri AV19]
ref|NP_614734.1| DNA-directed RNA polymerase subunit E' [Methanopyrus kandleri AV19]
Length = 183
Score = 47.0 bits (110), Expect = 0.001
Identities = 30/152 (19%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Frame = -1
Query: 762 EMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEH-----GYYIAVNQLKAISE 598
E+ V I P+Q + A++ L DV + ++ G+ + V+++ +
Sbjct: 6 ELETTVRIPPTQFTSD---VEDAVLKALENDVEGKLFREDDTGEPIGFVVFVDEILDVEN 62
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
+ G V F + +P++ EV+VG V R+ ++G F++ GP++ + + +
Sbjct: 63 EGIFPGDGASYHRVRFRALVFRPVEREVVVGEVTRVKEYGAFVRLGPLDGLLHVSQILDE 122
Query: 417 YKYIGGENAMFMNDHS--KLEKDTAVRFKVLG 328
Y Y G + + + +L++ ++ ++G
Sbjct: 123 YMYYDGAREALVGEETGRELKRGDVIKVMIIG 154
>ref|ZP_01154036.1| DNA-directed RNA polymerase [Methanosaeta thermophila PT]
gb|EAR48186.1| DNA-directed RNA polymerase [Methanosaeta thermophila PT]
Length = 206
Score = 46.6 bits (109), Expect = 0.001
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = -1
Query: 657 RASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHG 478
R + G +A+ + +I EG++ G V + V F + KP EV+ G V I+K G
Sbjct: 37 RVDRTLGAIVAILGVDSIGEGRIIAGDGAVYYDVIFDAVVFKPEMQEVVEGEVVEIVKFG 96
Query: 477 VFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVRFKVLGFRWMEAD 307
F+ GP + + + Y +NA ++ + L + VR +++ E D
Sbjct: 97 AFVSIGPFDGLLHVSQITDEYMAYDEKNARLVSKDTNKFLAEGDRVRARIIAVSLNERD 155
>emb|CAG60697.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_447750.1| unnamed protein product [Candida glabrata]
Length = 216
Score = 46.2 bits (108), Expect = 0.002
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F+ ++ V I P Q R + + I L + G ++V L + E
Sbjct: 1 MFILTKLKDLVRIPPDQFHRDAV----SAITHELNVKYSNKVVPHVGLSVSVYDLLEVDE 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK-SGPVESIFLAEKSMS 421
G++R G V+F C+ KP GE++ G + R G+ + G + IF+ +K +
Sbjct: 57 GQLRPGDGASYINVTFRCVVFKPFAGEILTGWIKRCDGEGIQVSMMGLFDDIFIPKKMLF 116
Query: 420 NYKYIGGENAMF---MNDHSKLEKDT--AVRFKV 334
Y E+ + M++ +KL D +RF+V
Sbjct: 117 EGSYYSPEDGAWVWPMDEETKLYLDVNEMIRFRV 150
>emb|CAG59010.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_446086.1| unnamed protein product [Candida glabrata]
Length = 171
Score = 45.8 bits (107), Expect = 0.002
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 3/177 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLK--AI 604
+F ++S NV + PS G +++ I +LL++V K GY + V I
Sbjct: 1 MFFIKDLSLNVTLHPSFF---GPRMKQYIKTKLLQEVEGSCTGK-FGYILCVLDYDNIEI 56
Query: 603 SEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
G++ G F V + + KP KGEV+ G V +HG ++ GP++
Sbjct: 57 ERGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMP 116
Query: 423 SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ + G N + + + + +R K+ G + + +I D+LG +
Sbjct: 117 QDLTFNAGSNPPSYQSSEDIITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>ref|NP_010692.1| RNA polymerase II subunit B16; forms two subunit dissociable
complex with Rpb4p; Rpb7p [Saccharomyces cerevisiae]
gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II 19 kDa polypeptide (B16)
pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gb|AAB64844.1| Rpb7p: RNA polymerase II subunit; YDR404C; CAI: 0.15 [Saccharomyces
cerevisiae]
pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-Tfiis Complex
pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
Length = 171
Score = 45.8 bits (107), Expect = 0.002
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 3/177 (1%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS- 601
+F ++S N+ + PS G +++ + +LLE+V K GY + V I
Sbjct: 1 MFFIKDLSLNITLHPSFF---GPRMKQYLKTKLLEEVEGSCTGK-FGYILCVLDYDNIDI 56
Query: 600 -EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM 424
G++ G F V + + KP KGEV+ G V +HG ++ GP++
Sbjct: 57 QRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMP 116
Query: 423 SNYKYIGGEN-AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ + G N + + + + +R K+ G + + +I D+LG +
Sbjct: 117 QDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG--CISQVSSIHAIGSIKEDYLGAI 171
>dbj|BAA31033.1| 188aa long hypothetical DNA-directed RNA polymerase subunit E
[Pyrococcus horikoshii OT3]
ref|NP_143736.1| DNA-directed RNA polymerase subunit E' [Pyrococcus horikoshii OT3]
Length = 188
Score = 45.4 bits (106), Expect = 0.003
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = -1
Query: 699 KAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKG 520
K + +L D ++ G +++ ++K + +G + G V F + +P +
Sbjct: 23 KEAAMLVLRDTYEGTYDRDEGVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKRD 82
Query: 519 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAV 346
EV+ G V ++ G F++ GP++ + + M +Y N F+ K L+ AV
Sbjct: 83 EVVEGTVVDVVPFGAFIRIGPMDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDAV 142
Query: 345 RFKVL 331
R +++
Sbjct: 143 RARII 147
>ref|YP_447665.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]
gb|ABC57022.1| RpoE1 [Methanosphaera stadtmanae DSM 3091]
Length = 185
Score = 45.4 bits (106), Expect = 0.003
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = -1
Query: 657 RASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHG 478
+ K+ G + V ++ SEGKV G + V F + KPM EV+ G V I++ G
Sbjct: 37 KLDKKLGILVMVTEVIDHSEGKVVIGDGAAFYHVKFNALFYKPMLHEVIDGEVIEIIEFG 96
Query: 477 VFLKSGPVESIFLAEKSMSNY-KYIGGENAMFMNDHSK-LEKDTAVRFKVL 331
F++ GP++ + + ++Y Y A+ + +K L++ VR +++
Sbjct: 97 AFVRIGPMDGLVHVSQITNDYINYDVKRGALLAKESNKSLDETDFVRARIV 147
>gb|AAB84770.1| DNA-dependent RNA polymerase, subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
ref|NP_275407.1| DNA-directed RNA polymerase subunit E' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 184
Score = 45.4 bits (106), Expect = 0.003
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
+ V +L + R K G I V +++ I GKV G V+FT + KP E+
Sbjct: 25 VAVEVLNETYVGRMDKNLGQLITVKEIEDIGIGKVIMGDGAAYHEVTFTALFFKPELHEI 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNY 415
+ G V I + G F++ GPV+ + + +Y
Sbjct: 85 VEGEVIEIAEFGAFVRIGPVDGLVHVSQVTDDY 117
>dbj|BAD85888.1| DNA-directed RNA polymerase, subunit E' [Thermococcus kodakarensis
KOD1]
ref|YP_184112.1| DNA-directed RNA polymerase subunit E' [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 45.4 bits (106), Expect = 0.003
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = -1
Query: 648 KEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFL 469
++ G +A+ ++ ISEG + G F + +P EV+ G V ++ +G F+
Sbjct: 40 RDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFI 99
Query: 468 KSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVRFKVLG 328
+ GP++ + + M +Y +N F+ + L+ VR +++G
Sbjct: 100 RIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIG 148
>ref|YP_331263.1| DNA-directed RNA polymerase subunit E' [Natronomonas pharaonis DSM
2160]
emb|CAI50631.1| DNA-directed RNA polymerase subunit E' [Natronomonas pharaonis DSM
2160]
Length = 189
Score = 44.3 bits (103), Expect = 0.006
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
++ RLL+D + ++ G ++V + I +G V V + F +T P EV
Sbjct: 25 LVKRLLQDKLEGQMDEDVGSIVSVTAVHDIGDGAVLPNRPGVYYEAEFDAVTFDPQMQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVRF 340
+ G V ++ G F+ GPV+ + + Y EN + S L +VR
Sbjct: 85 VDGEVVEVVNFGAFVGIGPVDGLLHVSQISDEYLAYDEENQQLASRDSNRVLSVGDSVRA 144
Query: 339 KVL 331
+++
Sbjct: 145 RIV 147
>ref|YP_137289.1| DNA-directed RNA polymerase subunit E' [Haloarcula marismortui ATCC
43049]
gb|AAV47583.1| DNA-directed RNA polymerase subunit E' [Haloarcula marismortui ATCC
43049]
Length = 192
Score = 44.3 bits (103), Expect = 0.006
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
++ RLL++ R ++ G ++V ++ I G V V + F +T P EV
Sbjct: 25 LVKRLLQEKLEGRMDEDVGSVVSVIEVHDIGTGAVLPNKPGVYYEAEFDALTFDPQMQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVRF 340
+ G V ++ G F+ GPV+ + + Y EN + S L AVR
Sbjct: 85 VDGEVVEVVNFGAFIGIGPVDGLLHVSQISDEYLAYDEENQQLASRESNRTLTVGDAVRA 144
Query: 339 KVL 331
+++
Sbjct: 145 RIV 147
>ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
gb|EAA67276.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
Length = 248
Score = 44.3 bits (103), Expect = 0.006
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 8/182 (4%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + PS + R + + + +LL+DV A + I++ ISE
Sbjct: 1 MFFLYNLERKVTLHPSFMGRN---MHELVTGKLLKDVEGTCAGSY--FIISIMDAFEISE 55
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVM--VGHVDRIL----KHGVFLKSGPVESIFLA 436
G++ G F V + + +P KGE + VD ++ G F +GP+ A
Sbjct: 56 GRILPGLGMAEFTVGYRAVVWRPFKGETESDLTQVDAVVHSINPQGFFAHAGPLRLFVSA 115
Query: 435 EKSMSNYKYIGGEN--AMFMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLG 262
++ K+ N+ + +E T VR K++G R + + +I D+LG
Sbjct: 116 HLIPNDVKWDPNATPPQFTNNEDTVIEPQTHVRVKIIGTRTEVG--EMWAIGSIKEDYLG 173
Query: 261 PL 256
PL
Sbjct: 174 PL 175
>gb|AAR39219.1| NEQ370 [Nanoarchaeum equitans Kin4-M]
ref|NP_963658.1| DNA-directed RNA polymerase subunit E' [Nanoarchaeum equitans
Kin4-M]
Length = 181
Score = 43.9 bits (102), Expect = 0.008
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F +E+ V + P L K + +AI LL+ + +K+ G+ +++ + SE
Sbjct: 1 MFFISEVEDYVRVDPRDLKEK--TIEEAIKNALLKQY-EGKINKQLGWVLSILDILDKSE 57
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G + G + + V F +T KP+ EV +G + I+ G ++ GP + + + M +
Sbjct: 58 GYLGYNDGGIYYKVRFKVLTWKPILKEVTLGIISNIVDFGAYVNIGPTDGLIHISQIMDD 117
Query: 417 YKYIGGENAMFMNDHSKLEK-DTAVRFKVLG 328
+ + K+ K + V+ K++G
Sbjct: 118 IVDYSKDKVLAGRKTKKILKIEDIVKAKIVG 148
>gb|AAL80380.1| DNA-directed RNA polymerase, subunit e'; (rpoE1) [Pyrococcus
furiosus DSM 3638]
ref|NP_577985.1| DNA-directed RNA polymerase subunit E' [Pyrococcus furiosus DSM
3638]
Length = 189
Score = 43.9 bits (102), Expect = 0.008
Identities = 23/105 (21%), Positives = 47/105 (44%)
Frame = -1
Query: 681 LLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGH 502
+L + K+ G +++ ++K I +G + G V F + +P EV+ G+
Sbjct: 29 ILRETYEGTYDKDEGVILSILEVKDIKDGIIIPGDGATYHEVVFDVLVWEPKIHEVVEGY 88
Query: 501 VDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK 367
V ++ G F++ GP++ + + M +Y N F+ K
Sbjct: 89 VADVMPFGAFIRIGPIDGLVHISQLMDDYVVYDERNKQFVGKEKK 133
>emb|CAB50589.1| rpoE1 DNA-directed RNA polymerase, subunit E' [Pyrococcus abyssi
GE5]
ref|NP_127359.1| DNA-directed RNA polymerase subunit E' [Pyrococcus abyssi GE5]
Length = 188
Score = 43.5 bits (101), Expect = 0.011
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = -1
Query: 699 KAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKG 520
K + +L + + K+ G +++ ++K + +G + G V F + +P +
Sbjct: 23 KEAAMLVLRETYEGKYDKDEGVILSIVEVKEVGDGIIVPGDGATYHEVVFDVLVWEPKQQ 82
Query: 519 EVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAV 346
EV+ G V + G F++ GP++ + + M +Y N F+ K L+ AV
Sbjct: 83 EVVEGTVVDAVPFGAFVRIGPMDGLVHISQLMDDYVVYDERNKQFVGKEKKYLLKIGDAV 142
Query: 345 RFKVL 331
R +++
Sbjct: 143 RARII 147
>ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gb|EAL85294.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
Length = 139
Score = 43.5 bits (101), Expect = 0.011
Identities = 35/117 (29%), Positives = 59/117 (50%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
M FL+ E + + PS G +R+ +I RL E+ R + +H + I V + I
Sbjct: 1 MFFLKEETKV-ISLHPSYF---GPNMREYLINRLNEE-EEGRCTGDH-FVICVMDMVDIG 54
Query: 600 EGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEK 430
EG+V +G + + + I KP +GE + V + G+F +GP+ S+F+A K
Sbjct: 55 EGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKPTGIFTLAGPL-SVFIARK 110
>gb|AAY80201.1| DNA-directed RNA polymerase subunit E [Sulfolobus acidocaldarius
DSM 639]
sp|P39466|RPOE_SULAC DNA-directed RNA polymerase subunit E
ref|YP_255494.1| DNA-directed RNA polymerase subunit E' [Sulfolobus acidocaldarius
DSM 639]
Length = 183
Score = 43.5 bits (101), Expect = 0.011
Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
I +++L + K+ G + + KA EG + G V F + P+ EV
Sbjct: 25 IAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVES-IFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVR 343
+ G V ++ +GV++ GPV+ + +++ + N K+ + + + SK ++K VR
Sbjct: 85 IEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKF-DSNRGILIGEKSKKSIQKGDRVR 143
Query: 342 FKVLGFRWMEADRQFQLLATIAGDFLGPL 256
++ M + R ++ T+ +LG +
Sbjct: 144 AMIISAS-MSSGRLPRIALTMKQPYLGKI 171
>gb|AAK40742.1| DNA-directed RNA polymerase, subunit E' (rpoE1) [Sulfolobus
solfataricus P2]
ref|NP_341952.1| DNA-directed RNA polymerase subunit E' [Sulfolobus solfataricus P2]
Length = 180
Score = 43.1 bits (100), Expect = 0.014
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Frame = -1
Query: 648 KEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFL 469
K+ G +A+ +K EG + G V F IT P+ EV+ G V ++ +G+F+
Sbjct: 40 KDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFV 99
Query: 468 KSGPVES-IFLAEKSMSNYKYIGGENAMFMNDHSK-LEKDTAVRFKVLGFRWMEADRQFQ 295
GP++ + +++ + KY +F K ++K VR +V+ R +
Sbjct: 100 NLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPR 159
Query: 294 LLATIAGDFLGPL 256
+ T+ +LG L
Sbjct: 160 IALTMRQPYLGKL 172
>ref|NP_113115.1| RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
gb|AAK39688.1| RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
Length = 196
Score = 42.7 bits (99), Expect = 0.018
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -1
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+ VLF V+F + K KGE++ V I G+F +G + +IF++ K +S
Sbjct: 84 GKILPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNITSFGIFASAG-ILNIFISNKFISQ 142
Query: 417 YKYIGGENAM--FMNDHSKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+ F N ++K+ +R K+L ++ Q + I +LG L
Sbjct: 143 DLISQQSQTLFNFKNSTINIKKNDIIRCKILNLKYNTG--SIQAIGCIDDKYLGKL 196
>dbj|BAB65360.1| 183aa long hypothetical DNA-directed RNA polymerase subunit E
[Sulfolobus tokodaii str. 7]
ref|NP_376251.1| DNA-directed RNA polymerase subunit E' [Sulfolobus tokodaii str. 7]
Length = 183
Score = 42.4 bits (98), Expect = 0.024
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
I +++L + K+ G +AV K EG + G VSF + P+ EV
Sbjct: 25 IALQILRQEYQEKMIKDLGLVLAVLDAKVSEEGYIIFGDGATYHEVSFEMLAFVPIIQEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVESI-FLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVR 343
+ G V+++ +GV++ GPV+ + +++ + N K+ + + + SK ++K VR
Sbjct: 85 VEGEVNQVDNYGVYVNIGPVDGLAHISQITDDNLKF-DQNRGILIGERSKKIIQKGDRVR 143
Query: 342 FKVLGFRWMEADRQFQLLATIAGDFLGPL 256
+++ R ++ T+ +LG +
Sbjct: 144 ARIISVS-TSGGRMPRIALTMKQPYLGKI 171
>emb|CAA53164.1| DNA-directed RNA polymerase [Sulfolobus acidocaldarius]
Length = 248
Score = 42.0 bits (97), Expect = 0.031
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
I +++L + K+ G + + KA EG + G V F + P+ EV
Sbjct: 25 IAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEV 84
Query: 513 MVGHVDRILKHGVFLKSGPVES-IFLAEKSMSNYKYIGGENAMFMNDHSK--LEKDTAVR 343
+ G V ++ +GV++ GPV+ + +++ + N K+ + + + SK + K VR
Sbjct: 85 IEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKF-DSNRGILIGEKSKKSITKGDRVR 143
Query: 342 FKVLGFRWMEADRQFQLLATIAGDFLG 262
++ M + R ++ T+ +LG
Sbjct: 144 AMIISAS-MSSGRLPRIALTMKQPYLG 169
>ref|YP_142730.1| unknown [Acanthamoeba polyphaga mimivirus]
gb|AAV50645.1| unknown [Acanthamoeba polyphaga mimivirus]
Length = 199
Score = 42.0 bits (97), Expect = 0.031
Identities = 28/138 (20%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Frame = -1
Query: 681 LLEDVTHRRASK--EHGYYIAVNQLKAISEGKVRE--LTGDVLFPVSFTCITQKPMKGEV 514
LLE++ + K EHG + VN++ G + + +G ++ V + C+ P+K
Sbjct: 31 LLENLEAKVKDKVTEHGIVLKVNRIIEYDYGIISKNNFSGTAIYRVKYECLICSPVKNLS 90
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSKLEKDTAVRFKV 334
++ V+ I+K + K+GPV S+ + N ++ N+ + ++K V+ +
Sbjct: 91 IICLVENIVKGYIIAKNGPVIVAIPFNNIDSDKFQLTNGNIVYKNNSNNIQKGDYVKVSI 150
Query: 333 LGFRWMEADRQFQLLATI 280
+ + +++ +A +
Sbjct: 151 INIKTNLNEKKITTIAKL 168
>gb|AAT43451.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
ref|YP_023644.1| DNA-directed RNA polymerase subunit E' [Picrophilus torridus DSM
9790]
Length = 195
Score = 41.2 bits (95), Expect = 0.053
Identities = 28/104 (26%), Positives = 46/104 (44%)
Frame = -1
Query: 678 LEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHV 499
+ D T R K + +++ ++ + +G + G V V +T I P EV+ G V
Sbjct: 41 INDSTGRNMGK--CFIVSIENIELVGDGTIVHGDGGVYQDVVYTAIAYYPKMHEVVDGVV 98
Query: 498 DRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHSK 367
I K G F+K GP E + + M + I N F+ +K
Sbjct: 99 ISIQKFGAFVKFGPFEGLLHISQIMDDIINIDMANQRFVGRDTK 142
>ref|XP_454570.1| unnamed protein product [Kluyveromyces lactis]
emb|CAG99657.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 210
Score = 40.4 bits (93), Expect = 0.090
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F+ +++ V I P Q R + + IV L + G + V + + E
Sbjct: 1 MFILTKVADLVRIPPDQFKRDTI----STIVHELNTKYANKIIPHIGLCVTVYDVLDVDE 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK-SGPVESIFLAEKSMS 421
G+++ G V+F + KP GE++ G + + G+ + G E IF+ + +
Sbjct: 57 GQLKPGDGAAFINVTFRALVFKPFVGEIVTGWISQCTTEGIKVSLLGLFEDIFVPQNMLF 116
Query: 420 NYKYIG-GENAMF--MNDHSKLEKDT--AVRFKV 334
Y ENA M+D +KL D +RF+V
Sbjct: 117 EGSYFSPKENAWIWPMDDETKLYFDVNEKIRFRV 150
>ref|YP_504274.1| DNA-directed RNA polymerase [Methanospirillum hungatei JF-1]
gb|ABD42555.1| DNA-directed RNA polymerase [Methanospirillum hungatei JF-1]
Length = 190
Score = 40.0 bits (92), Expect = 0.12
Identities = 23/93 (24%), Positives = 44/93 (47%)
Frame = -1
Query: 693 IIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEV 514
+I+ +L++ KE G +IAV ++ I EG++ G V + V F + + E+
Sbjct: 25 VILDVLQEQLEGSIDKEIGIFIAVTKVLRIGEGEMVPGDGAVYYDVDFEGLALRLSLQEI 84
Query: 513 MVGHVDRILKHGVFLKSGPVESIFLAEKSMSNY 415
+ G V G F+ GP++++ + Y
Sbjct: 85 IEGIVVETTSFGAFVSLGPIDAMLHVSQISDEY 117
>gb|AAL65004.1| DNA-directed RNA polymerase subunit E' (rpoE1) [Pyrobaculum
aerophilum str. IM2]
ref|NP_560822.1| DNA-directed RNA polymerase subunit E' [Pyrobaculum aerophilum str.
IM2]
Length = 191
Score = 39.7 bits (91), Expect = 0.15
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -1
Query: 648 KEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFL 469
+E GY +AV +K EGK+ G FT + P+ GEV+ G V+ + G+ +
Sbjct: 41 REVGYIVAVLNVKVGREGKIVFGDGGTYHRAVFTMLAFMPLDGEVVEGVVENAREMGMLV 100
Query: 468 KSGPV 454
+ GP+
Sbjct: 101 RIGPI 105
>emb|CAA20136.1| rpb7 [Schizosaccharomyces pombe]
Length = 141
Score = 39.7 bits (91), Expect = 0.15
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = -1
Query: 780 MVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAIS 601
M F E+S + + PS G ++ + +LL DV S ++GY I V I
Sbjct: 1 MPFFLKELSLTISLHPSYF---GPRMQDYLKAKLLADV-EGTCSGQYGYIICVLDSNTID 56
Query: 600 EGKVRELTGDVL--FPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPV 454
K R + G F V + + +P +GEV+ V + K G F GP+
Sbjct: 57 IDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPL 107
>ref|NP_912165.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide [Oryza sativa (japonica cultivar-group)]
dbj|BAC75582.1| putative DNA-directed RNA polymerase III subunit 22.9 kDa
polypeptide [Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 39.3 bits (90), Expect = 0.20
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F+ +++ N+ + P L R + KA + RL D + G ++V ++++
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLD----KVVANLGLCVSVYDIRSVEG 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G + G + VSF + +P GEV+VG + + G+ + I + M
Sbjct: 57 GFIFPGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLDFFSDISIPGHLM-Q 115
Query: 417 YKYIGGENAMFM-----NDHSKLEKDTAVRFKVLGFRW-------MEADRQF---QLLAT 283
Y + +M D L+ D +RF V ++ E DR F Q++ +
Sbjct: 116 YGTARALDGRWMLKTEDGDELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGS 175
Query: 282 IAGDFLGPL 256
I GD LG L
Sbjct: 176 IKGDGLGLL 184
>emb|CAA81985.1| RPC25 [Saccharomyces cerevisiae]
emb|CAA80954.1| unknown function [Saccharomyces cerevisiae]
ref|NP_012778.1| RNA polymerase III subunit C25; Rpc25p [Saccharomyces cerevisiae]
sp|P35718|RPC25_YEAST DNA-directed RNA polymerase III 25 kDa polypeptide (C25)
gb|AAA20241.1| RNA polymerase III C25 subunit
Length = 212
Score = 38.9 bits (89), Expect = 0.26
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F+ ++++ V I P Q R + + I L + + G I + L + E
Sbjct: 1 MFILSKIADLVRIPPDQFHRDTI----SAITHQLNNKFANKIIPNVGLCITIYDLLTVEE 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK-SGPVESIFLAEKSMS 421
G+++ G V+F + KP GE++ G + + G+ + G + IF+ + +
Sbjct: 57 GQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLF 116
Query: 420 NYKYIGGENAMF---MNDHSKLEKDT--AVRFKV 334
Y E + + M++ +KL D +RF++
Sbjct: 117 EGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150
>gb|AAS51276.1| ACR049Wp [Ashbya gossypii ATCC 10895]
ref|NP_983452.1| ACR049Wp [Eremothecium gossypii]
Length = 210
Score = 38.9 bits (89), Expect = 0.26
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F+ ++S V I P Q R + I L + + G I + L + E
Sbjct: 1 MFILTKISDLVRIPPDQFHRD----TASAINHQLNNKYANKIIPHVGLCITIYDLLTVDE 56
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLK-SGPVESIFLAEKSMS 421
G+++ G V+F + KP GE++ G + + G+ + G + IF+ K +
Sbjct: 57 GQLKPGDGASFINVTFRALVFKPFVGEIITGWITQCTNEGIKVSLLGMFDDIFIPAKMLF 116
Query: 420 NYKYIGGENAMF---MNDHSKLEKDT--AVRFKV 334
Y +++ + M++ +KL D +RF+V
Sbjct: 117 EGSYYSVDDSAWVWQMDEETKLYFDVNEKIRFRV 150
>ref|XP_502697.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG80885.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 202
Score = 38.9 bits (89), Expect = 0.26
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = -1
Query: 639 GYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSG 460
G I V L + EG+V G ++F + +P GEV+ G + G+ +K
Sbjct: 43 GLCICVYDLITVGEGQVMSGDGAAFVKITFRMVVFRPFVGEVLEGWISSCTAEGIKVKME 102
Query: 459 PVESIFL-AEKSMSNYKYIGGENA-MFMNDHSK---LEKDTAVRFKV 334
+ IF+ A N +++ E A M+ D + L+ + +RF++
Sbjct: 103 FFDDIFIPAHLLFENSQFVAREQAWMWCPDEEQELFLDTNEKIRFRI 149
>gb|AAZ69269.1| DNA-directed RNA polymerase, subunit E [Methanosarcina barkeri str.
fusaro]
ref|YP_303849.1| DNA-directed RNA polymerase subunit E' [Methanosarcina barkeri str.
fusaro]
Length = 194
Score = 38.9 bits (89), Expect = 0.26
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = -1
Query: 678 LEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHV 499
L + + K+ G +A+ ++ I EG + G V + V+F I P E++ G V
Sbjct: 30 LREKLEGQVDKKLGSLVAICKIVEIGEGHILVGDGAVYYDVTFEAIMFVPELQEIIEGEV 89
Query: 498 DRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFM--NDHSKLEKDTAVRFKVL 331
+ GVF+ GP++ + + ++ +NA + N + + VR +V+
Sbjct: 90 VETVGFGVFVGMGPMDGLLHVSQITDDFISYDAKNARLVTKNGGKSIAEGDHVRARVV 147
>emb|CAF29996.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
ref|NP_987560.1| DNA-directed RNA polymerase subunit E' [Methanococcus maripaludis
S2]
Length = 187
Score = 38.9 bits (89), Expect = 0.26
Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Frame = -1
Query: 690 IVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVM 511
+ R+L + K+ G+ +++ + +S+G + G F +T P EV+
Sbjct: 26 VKRVLMEKYEGILDKDIGFILSIVDVDNVSDGSIIYGDGAAYHETEFNVLTYVPELQEVV 85
Query: 510 VGHVDRILKHGVFLKSGPVESIFLAEKSMSNY-KYIGGENAMFMNDHSK-LEKDTAVRFK 337
G + +++ G F++ GP++ + + M ++ + A+ + K LEK VR +
Sbjct: 86 DGEIVDVVEFGAFVRLGPLDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKVRAR 145
Query: 336 VLGFRWMEADRQFQLLA-TIAGDFLGPL 256
++ E ++ +A T+ + LG L
Sbjct: 146 IVAVSLREEKKRGSKIALTMRQNGLGRL 173
>gb|AAM07047.1| DNA-directed RNA polymerase, subunit E [Methanosarcina acetivorans
C2A]
ref|NP_618567.1| DNA-directed RNA polymerase subunit E' [Methanosarcina acetivorans
C2A]
Length = 194
Score = 38.9 bits (89), Expect = 0.26
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Frame = -1
Query: 690 IVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVM 511
I L + + K+ G +AV + + EG + G V + V+F I P E++
Sbjct: 26 IKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHILVGDGAVYYDVTFEAIMFIPELQEII 85
Query: 510 VGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFM--NDHSKLEKDTAVRFK 337
G V + GVF+ GP++ + + ++ +NA + N + + VR +
Sbjct: 86 EGEVVEAVGFGVFVGMGPMDGLLHVSQITDDFISYDAKNARLVTKNGGKSIAEGDHVRAR 145
Query: 336 VL 331
++
Sbjct: 146 IV 147
>ref|NP_632620.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
gb|AAM30292.1| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1]
Length = 194
Score = 38.9 bits (89), Expect = 0.26
Identities = 24/100 (24%), Positives = 44/100 (44%)
Frame = -1
Query: 690 IVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVM 511
I L + + K+ G +AV + + EG + G V + V+F I P E++
Sbjct: 26 IKNALREKLEGQVDKKLGSLVAVYNIDEVGEGHILVGDGAVYYDVTFEAIMFYPDLQEII 85
Query: 510 VGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENA 391
G V + GVF+ GP++ + + ++ +NA
Sbjct: 86 EGEVVEAVGFGVFIGMGPMDGLLHVSQITDDFISYDAKNA 125
>ref|ZP_00563695.1| DNA-directed RNA polymerase [Methanococcoides burtonii DSM 6242]
gb|EAM99427.1| DNA-directed RNA polymerase [Methanococcoides burtonii DSM 6242]
Length = 192
Score = 38.5 bits (88), Expect = 0.34
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Frame = -1
Query: 678 LEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHV 499
L++ R K G +A+ ++ + EG + G V + V F I P EV+ G V
Sbjct: 30 LKEKLEGRVDKALGSIVAITDIEEVGEGHILVGDGAVYYDVIFEAIIFIPQLQEVIEGLV 89
Query: 498 DRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMN--DHSKLEKDTAVRFKVLGF 325
++ G F+ G ++ + + ++ G+N ++ + L + VR +++
Sbjct: 90 VETVEFGAFVSIGAMDGLLHVSQITDDFMSYDGKNGRLISKVGNRTLSEGDKVRARIVAV 149
Query: 324 RWMEAD-RQFQLLATIAGDFLGPL 256
E + R ++ T+ LG L
Sbjct: 150 STNEREPRDSKIGLTMRQHALGRL 173
>dbj|BAA79171.1| 186aa long hypothetical DNA-directed RNA polymerase subunit E'
[Aeropyrum pernix K1]
ref|NP_147087.1| DNA-directed RNA polymerase subunit E' [Aeropyrum pernix K1]
Length = 186
Score = 38.5 bits (88), Expect = 0.34
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -1
Query: 657 RASKEHGYYIAVNQLKAISEGKVRELTGD--VLFPVSFTCITQKPMKGEVMVGHVDRILK 484
R +E G +AV K + +G + ++GD + +PV + + KP++ E++ G V R
Sbjct: 38 RIDEEMGVIVAVLDAKIVGDGIIPPVSGDPSIYYPVRYRVLAFKPVQLEIVRGVVTRADD 97
Query: 483 HGVFLKSGPVE 451
G+ + GP++
Sbjct: 98 FGLVVNLGPLD 108
>ref|XP_385778.1| hypothetical protein FG05602.1 [Gibberella zeae PH-1]
gb|EAA73777.1| hypothetical protein FG05602.1 [Gibberella zeae PH-1]
Length = 199
Score = 37.7 bits (86), Expect = 0.58
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Frame = -1
Query: 639 GYYIAVNQLKAISEGKVRELTGDV------LFPVSFTCITQKPMKGEVMVGHVDRILKHG 478
G I + L SEG + TG V F F + +P KGEVM+G + G
Sbjct: 43 GLCICLYDLHWASEGLIGHGTGLVNVNAKEYFTAEFRMVVFRPFKGEVMIGRIRSSTPAG 102
Query: 477 VFLKSGPVESIFLA-EKSMSNYKYIGGENAMFMN---DHSKLEKDTAVRFKVLGFRW 319
+ L++ + IF+ E+ +Y E N D + VRF+V+ W
Sbjct: 103 INLRTDFFDDIFVPFEELPEGAEYNHSEQLWIWNLEEDRLFYDNHEMVRFQVIDEEW 159
>ref|XP_644642.1| hypothetical protein DDB0217175 [Dictyostelium discoideum]
ref|XP_644608.1| RNA polymerase III subunit [Dictyostelium discoideum]
gb|AAO51051.1| hypothetical protein [Dictyostelium discoideum]
gb|EAL70716.1| hypothetical protein DDB0217175 [Dictyostelium discoideum]
gb|EAL70667.1| RNA polymerase III subunit [Dictyostelium discoideum]
Length = 252
Score = 37.4 bits (85), Expect = 0.76
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Frame = -1
Query: 747 VLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKE----HGYYIAVNQLKAISEGKVREL 580
V I+PSQ + + V+ +ED ++ + + G ++A+ + + V
Sbjct: 11 VRIAPSQFNNE---------VQTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSG 61
Query: 579 TGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM---SNYKY 409
G V F + KP KGEV+ G + + + + + G I+L + SNY
Sbjct: 62 DGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQ 121
Query: 408 IGG-------ENAMFMNDHSKLEKDTAVRFKV 334
G EN +F D + VRFK+
Sbjct: 122 EEGLWYWEWNENQLFFEDGGR------VRFKI 147
>dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae]
Length = 193
Score = 37.0 bits (84), Expect = 0.99
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASK---EHGYYIAVNQLKA 607
+F+ +S + ISP K V + +++ + A+K + G I L
Sbjct: 1 MFILTTLSDLIQISPEDFS-------KYSSVAIEDNINEKYANKVIQKVGLCIGFYDLLE 53
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGV 475
S+G + TG V V F I +P KGE+M+G + +HG+
Sbjct: 54 SSDGLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGI 97
>emb|CAG87863.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_459633.1| hypothetical protein DEHA0E07909g [Debaryomyces hansenii CBS767]
Length = 196
Score = 36.2 bits (82), Expect = 1.7
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = -1
Query: 639 GYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSG 460
G I++ L I +G ++ G V+F C+ KP GEV+ G V G+ +K
Sbjct: 43 GLVISLWDLIDIKDGLLKPGDGASFVEVTFRCVVWKPFIGEVLTGWVSECSAEGIKVKLE 102
Query: 459 PVESIFLAEKSMSNYKYIGGENAMF 385
+ IF+ + NY + EN +F
Sbjct: 103 FFDEIFIPK----NYFF---ENCLF 120
>ref|XP_715928.1| RNA polymerase III subunit [Candida albicans SC5314]
ref|XP_715878.1| RNA polymerase III subunit [Candida albicans SC5314]
gb|EAK96917.1| hypothetical protein CaO19.8073 [Candida albicans SC5314]
gb|EAK96866.1| hypothetical protein CaO19.443 [Candida albicans SC5314]
Length = 195
Score = 35.8 bits (81), Expect = 2.2
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = -1
Query: 639 GYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSG 460
G I + + I +G ++ G V F I KP +GE++ G V G+ ++
Sbjct: 43 GLVITIWDILDIKDGLLKPGDGGSYVEVRFRSIVWKPFRGEILTGWVTECTAKGIKVRME 102
Query: 459 PVESIFLAEKSM-SNYKYIGGENA-MFMNDHSKL--EKDTAVRFKV 334
+ I++ + + N KY E A +++ D ++L + + +RF+V
Sbjct: 103 FFDEIWIPKDFLFENCKYSESEQAWIYLLDENELFIDVNEKIRFRV 148
>ref|XP_656629.1| DNA-directed RNA polymerase III subunit [Entamoeba histolytica
HM-1:IMSS]
gb|EAL51243.1| DNA-directed RNA polymerase III subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 200
Score = 35.8 bits (81), Expect = 2.2
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = -1
Query: 579 TGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSM-SNYKYIG 403
TGDV + V F I P +GE++ G V R L G+ + +S+F+ + +N +
Sbjct: 26 TGDVYYEVVFNFIIFSPFQGELIEGRVLRSLPSGIQVTLSFTDSVFIDQCYFPANSDFDE 85
Query: 402 GENAMFMN-DHSKLEK--DTAVRFKV 334
E + N D +KL ++ +RFKV
Sbjct: 86 DEQLWYWNYDGTKLPLYINSTIRFKV 111
>gb|EAQ86888.1| hypothetical protein CHGG_08141 [Chaetomium globosum CBS 148.51]
Length = 2748
Score = 35.4 bits (80), Expect = 2.9
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 127 HVSGSTRPNHW*QSLILHIRSNHPS-TI*RAMYIRTCLTCGSSSQRPKEVTSDRSKEL 297
H+ PN + Q+LILH+R H T+ R M R CL+ S+ P + T+DRS L
Sbjct: 446 HIDRRAHPNSYKQALILHLRFLHGRVTLLRPMLARHCLSRIPSA--PSDSTADRSGSL 501
>ref|ZP_00853373.1| hypothetical protein Shewmr7DRAFT_3693 [Shewanella sp. MR-7]
gb|EAP25440.1| hypothetical protein Shewmr7DRAFT_3693 [Shewanella sp. MR-7]
Length = 329
Score = 35.4 bits (80), Expect = 2.9
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1
Query: 660 RRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKH 481
RRA K+H + +N + G+ ++ +++P F I K +K GHVD + +H
Sbjct: 31 RRAFKDHPEVLVINDFRFTFNGETAQIDHLIIYPYGFVLIESKSIK-----GHVD-VNQH 84
Query: 480 GVFLKS 463
G + +S
Sbjct: 85 GEWTRS 90
>ref|ZP_00851778.1| hypothetical protein Shewana3DRAFT_1071 [Shewanella sp. ANA-3]
gb|EAP18739.1| hypothetical protein Shewana3DRAFT_1071 [Shewanella sp. ANA-3]
Length = 329
Score = 35.4 bits (80), Expect = 2.9
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1
Query: 660 RRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKH 481
RRA K+H + +N + G+ ++ +++P F I K +K GHVD + +H
Sbjct: 31 RRAFKDHPEVLVINDFRFTFNGETAQIDHLIIYPYGFVLIESKSIK-----GHVD-VNQH 84
Query: 480 GVFLKS 463
G + +S
Sbjct: 85 GEWTRS 90
>ref|ZP_00880909.1| hypothetical protein Shewmr4DRAFT_2291 [Shewanella sp. MR-4]
gb|EAP47181.1| hypothetical protein Shewmr4DRAFT_2291 [Shewanella sp. MR-4]
Length = 329
Score = 35.4 bits (80), Expect = 2.9
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1
Query: 660 RRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKH 481
RRA K+H + +N + G+ ++ +++P F I K +K GHVD + +H
Sbjct: 31 RRAFKDHPEVLVINDFRFTFNGETAQIDHLIIYPYGFVLIESKSIK-----GHVD-VNQH 84
Query: 480 GVFLKS 463
G + +S
Sbjct: 85 GEWTRS 90
>gb|EAL18546.1| hypothetical protein CNBJ1880 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 199
Score = 35.4 bits (80), Expect = 2.9
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Frame = -1
Query: 657 RASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHG 478
R E G ++V + +GKV G + + VSF + P GEV+VG V K
Sbjct: 8 RLVPEKGLALSVFDILTAEDGKVTWGNGLMYYKVSFRLMLFAPFVGEVIVGRVLSTTKTY 67
Query: 477 VFLKSGPVESIFLAEKSM-SNYKYIGGENAMF---MNDHSKLEKD--------------- 355
+ + G + I++ + N Y + A F ++D S L ++
Sbjct: 68 IRVSLGFFQDIYIVPSLLPPNSAYDPQQKAFFWVAIDDESTLTQEQLLNTVISERLYIDL 127
Query: 354 -TAVRFKVLGFRWME 313
A+RF+V W +
Sbjct: 128 GEAIRFRVDSIEWQD 142
>gb|AAW51402.1| GekBS086P [Gekko japonicus]
Length = 120
Score = 35.0 bits (79), Expect = 3.8
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 645 EHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVM 511
++G+ IAV + I G ++ G VL+PV + I P KGEV+
Sbjct: 41 KYGFVIAVTTIDNIGAGVIQPGGGFVLYPVKYKAIVFLPFKGEVV 85
>emb|CAD70761.1| probable serine/threonine protein kinase (SNF1) [Neurospora crassa]
Length = 777
Score = 34.3 bits (77), Expect = 6.4
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = -1
Query: 657 RASKEHGYYIAVNQLKAISEGKVR----ELTGDVLFPVSFTCITQKPMKGEVMVGHVDRI 490
R + G Y V L S GKV+ +TG V+ I +K + M G V+R
Sbjct: 68 RTEQRIGAYNIVKTLGEGSFGKVKLAVHRMTGQ---QVALKIIARKKLISRDMQGRVERE 124
Query: 489 LKHGVFLKSGPVESIFLAEKSMSNY----KYIGGENAMFMNDHSKLEKDTAVRF 340
+++ L+ + ++ K+ + +Y GGE ++ H K+++D A RF
Sbjct: 125 IEYLQLLRHPHIIKLYTVIKTPTEIIMVLEYAGGELFDYIVQHGKMKEDEARRF 178
>gb|EAA00210.2| ENSANGP00000009179 [Anopheles gambiae str. PEST]
ref|XP_320407.2| ENSANGP00000009179 [Anopheles gambiae str. PEST]
Length = 216
Score = 34.3 bits (77), Expect = 6.4
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASK---EHGYYIAVNQLKA 607
+F+ AE+ NV I+P GL L +AI +++ + A+K G IA+ +
Sbjct: 1 MFVLAELKDNVRIAPELF---GLKLPEAI----KDEINRKLANKVLLNVGLCIALKDIVK 53
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
+ + + G V+F I +PM G+V+ G + + GV + G + I + +
Sbjct: 54 LGDSIILPGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSREGVHITLGFFDDILIPPSA 113
Query: 426 MSN 418
+ +
Sbjct: 114 LQH 116
>gb|AAD43341.1| serine threonine protein kinase SNF1p [Cochliobolus carbonum]
Length = 880
Score = 33.9 bits (76), Expect = 8.4
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Frame = -1
Query: 657 RASKEHGYYIAVNQLKAISEGKVRELTGDVLFP-VSFTCITQKPMKGEVMVGHVDR---- 493
+AS+ G Y V L S GKV+ T V V+ I +K + M G ++R
Sbjct: 56 KASQRLGQYTIVRTLGEGSFGKVKLATHQVSGQKVALKIINRKRLVTRDMAGRIEREIQY 115
Query: 492 --ILKHGVFLK-----SGPVESIFLAEKSMSNYKYIGGENAMFMNDHSKLEKDTAVRF 340
+L+H +K + P E I + E Y GGE ++ +H KL++ A +F
Sbjct: 116 LQLLRHPHIIKLYTVITTPTEIIMVLE-------YAGGELFDYIVNHGKLQEAQARKF 166
>ref|XP_965434.1| hypothetical protein [Neurospora crassa N150]
ref|XP_331860.1| hypothetical protein [Neurospora crassa]
gb|EAA36198.1| hypothetical protein [Neurospora crassa]
Length = 169
Score = 33.9 bits (76), Expect = 8.4
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F + V + PS R + + + +L++DV A Y IA+ +SE
Sbjct: 1 MFFLHNLERRVTLHPSYFGRN---MHELVTTKLVKDVEGTCAGDY--YIIAIMDAFDVSE 55
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMV 508
G++ G F V + + +P KGEV++
Sbjct: 56 GRILPGNGLAEFTVKYRAVVWRPFKGEVLM 85
>gb|EAR97264.1| hypothetical protein TTHERM_00334410 [Tetrahymena thermophila SB210]
Length = 3083
Score = 33.9 bits (76), Expect = 8.4
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = -1
Query: 681 LLEDVTHRRASKEHGYYIAVNQLKAISEGK-----VRELTGDVLFPVSFTCITQKPMKGE 517
L+ D +K G Y + + + + EL G++ + +S TC Q P++
Sbjct: 2532 LIGDTLFNLPAKSEGNYELIYSPLVVGRQRGSIAFINELLGEIWYELSLTCEDQPPVRMN 2591
Query: 516 VMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
V+ + ++ H +FL++ P E A +SN
Sbjct: 2592 VLRCELGKVEAHQIFLEN-PSEKEVKATTKVSN 2623
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,832,368,393
Number of Sequences: 3454138
Number of extensions: 39367153
Number of successful extensions: 96230
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 92645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96183
length of database: 1,185,965,366
effective HSP length: 129
effective length of database: 740,381,564
effective search space used: 119941813368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)