BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX96059.1| dna-directed rna polymerase ii 8.2 kda polyp... 143 5e-33
ref|NP_849640.1| DNA-directed RNA polymerase [Arabidopsis t... 137 3e-31
sp|Q39290|RPB10_BRANA DNA-directed RNA polymerase II 8.2 kD... 136 5e-31
ref|NP_176363.1| DNA-directed RNA polymerase [Arabidopsis t... 133 4e-30
ref|XP_790633.1| PREDICTED: similar to DNA-directed RNA pol... 120 3e-26
ref|XP_697922.1| PREDICTED: similar to DNA-directed RNA pol... 119 6e-26
ref|XP_645350.1| RNA polymerase I core subunit [Dictyosteli... 119 6e-26
gb|AAP92539.1| Ab1-108 [Rattus norvegicus] 119 7e-26
gb|EAA00426.2| ENSANGP00000020255 [Anopheles gambiae str. P... 119 7e-26
ref|NP_001016343.1| hypothetical protein LOC549097 [Xenopus... 119 7e-26
gb|AAX29564.1| polymerase [synthetic construct] 119 7e-26
ref|XP_893115.1| PREDICTED: polymerase (RNA) II (DNA direct... 119 7e-26
ref|XP_577849.1| PREDICTED: similar to Ab1-108 [Rattus norv... 119 7e-26
ref|XP_521707.1| PREDICTED: similar to Ab1-108 [Pan troglod... 119 7e-26
gb|AAH95745.1| Zgc:112305 protein [Danio rerio] 119 1e-25
ref|NP_651280.1| Rpb10 CG13628-PA [Drosophila melanogaster]... 118 1e-25
ref|XP_922821.1| PREDICTED: similar to DNA-directed RNA pol... 118 2e-25
emb|CAF99674.1| unnamed protein product [Tetraodon nigrovir... 117 2e-25
ref|NP_490923.1| Y37E3.3 [Caenorhabditis elegans] >gi|13491... 117 3e-25
gb|AAX30120.1| putative RNA polymerase subunit [Schistosoma... 114 3e-24
ref|XP_577644.1| PREDICTED: similar to Ab1-108 [Rattus norv... 112 1e-23
emb|CAD21547.1| putative RNA polymerase subunit [Taenia sol... 110 3e-23
gb|AAO51490.1| similar to 60S ribosomal protein L32 [Caenor... 110 5e-23
emb|CAB11246.1| rpb10 [Schizosaccharomyces pombe] >gi|71602... 109 8e-23
ref|NP_113155.1| Putative RNA polymerase II subunit Rpb10 ... 108 2e-22
ref|XP_908369.1| PREDICTED: similar to DNA-directed RNA pol... 108 2e-22
emb|CAG90875.1| unnamed protein product [Debaryomyces hanse... 107 4e-22
gb|AAW41770.1| DNA-directed RNA polymerases i, ii, and iii ... 105 9e-22
gb|AAS56759.1| YOR210W [Saccharomyces cerevisiae] >gi|63247... 101 2e-20
ref|XP_761334.1| hypothetical protein UM05187.1 [Ustilago m... 100 4e-20
gb|AAS51389.1| ACR163Wp [Ashbya gossypii ATCC 10895] >gi|45... 100 6e-20
ref|XP_764803.1| DNA-directed RNA polymerase subunit N [The... 100 6e-20
ref|XP_453359.1| unnamed protein product [Kluyveromyces lac... 99 8e-20
gb|ABA27170.1| RNA polymerase II subunit RPB10 [Bigelowiell... 99 8e-20
ref|XP_426406.1| PREDICTED: similar to DNA-directed RNA pol... 99 1e-19
ref|XP_746670.1| RNA polymerases N / 8 kDa subunit [Aspergi... 94 3e-18
emb|CAE76459.1| probable DNA-directed RNA polymerase II cha... 94 4e-18
ref|XP_673919.1| DNA-directed RNA polymerase 2 8.2 kDa poly... 93 8e-18
emb|CAD50833.1| DNA-directed RNA polymerase 2 8.2 kDa polyp... 92 1e-17
ref|XP_680452.1| hypothetical protein PB001541.02.0 [Plasmo... 91 4e-17
gb|EAQ93466.1| hypothetical protein CHGG_01701 [Chaetomium ... 90 5e-17
ref|XP_805591.1| DNA-directed RNA polymerase subunit [Trypa... 88 2e-16
ref|XP_810368.1| DNA-directed RNA polymerase subunit [Trypa... 87 3e-16
emb|CAJ02972.1| DNA-directed RNA polymerase ii 8.2 Kd polyp... 86 1e-15
gb|ABA95940.1| dna-directed rna polymerase ii 8.2 kda polyp... 85 2e-15
gb|AAX69569.1| DNA-directed RNA polymerase subunit, putativ... 84 3e-15
emb|CAJ43708.1| RNA polymerase I subunit 1RPB10 [Trypanosom... 84 3e-15
ref|XP_815345.1| DNA-directed RNA polymerase ii 8.2 Kd poly... 83 8e-15
ref|XP_803070.1| DNA-directed RNA polymerase subunit [Trypa... 83 8e-15
ref|NP_585788.1| DNA-DIRECTED RNA POLYMERASE II 8.2kDa POLY... 82 1e-14
gb|AAM02691.1| DNA-directed RNA polymerase, subunit N [Meth... 78 2e-13
gb|AAM77740.1| RNA polymerase II subunit Rpb10 [Giardia int... 77 3e-13
ref|XP_766835.1| RNA polymerase II subunit Rpb10 [Giardia l... 77 3e-13
dbj|BAB67162.1| 66aa long hypothetical DNA-directed RNA pol... 77 3e-13
gb|AAK40429.1| DNA-directed RNA polymerase, subunit N (rpoN... 76 7e-13
gb|EAR94151.1| RNA polymerases N / 8 kDa subunit family pro... 76 1e-12
sp|O59298|RPON_PYRHO DNA-directed RNA polymerase subunit N 74 4e-12
emb|CAB49456.1| rpoN DNA-directed RNA polymerase, subunit N... 74 5e-12
dbj|BAA30744.1| 119aa long hypothetical DNA-directed RNA po... 73 8e-12
gb|AAL81767.1| DNA-directed RNA polymerase subunit n [Pyroc... 72 1e-11
ref|XP_654226.1| DNA-directed RNA polymerase subunit N [Ent... 71 2e-11
gb|AAZ70384.1| DNA-directed RNA polymerase subunit N [Metha... 69 9e-11
dbj|BAD85688.1| DNA-directed RNA polymerase subunit N [Ther... 69 9e-11
ref|ZP_01154317.1| RNA polymerases N/8 Kd subunits [Methano... 69 2e-10
emb|CAA56484.1| RNA polymerase subunit D [Sulfolobus acidoc... 68 2e-10
gb|AAM04042.1| DNA-directed RNA polymerase, subunit N [Meth... 67 3e-10
ref|NP_633782.1| DNA-directed RNA polymerase subunit N [Met... 67 3e-10
dbj|BAA80751.1| 77aa long hypothetical DNA-directed RNA pol... 65 1e-09
ref|ZP_00563999.1| RNA polymerases N/8 Kd subunits [Methano... 65 1e-09
gb|AAL62944.1| DNA-directed RNA polymerase subunit N (rpoN)... 65 2e-09
gb|ABB82963.1| DNA-directed RNA polymerase subunit N [uncul... 64 3e-09
ref|NP_069959.1| DNA-directed RNA polymerase subunit N [Arc... 64 5e-09
ref|XP_426407.1| PREDICTED: similar to DNA-directed RNA pol... 63 6e-09
ref|XP_874715.1| PREDICTED: similar to DNA-directed RNA pol... 63 6e-09
emb|CAA87658.1| RNA polymerase II subunit [Homo sapiens] >g... 63 6e-09
dbj|BAB60303.1| DNA-directed RNA polymerase N [Thermoplasma... 63 8e-09
gb|AAG19524.1| DNA-directed RNA polymerase subunit N; RpoN ... 62 1e-08
ref|YP_504306.1| RNA polymerases N/8 Kd subunits [Methanosp... 62 2e-08
emb|CAC11573.1| DNA-directed RNA polymerase, chain N relate... 61 2e-08
ref|XP_854177.1| PREDICTED: similar to DNA-directed RNA pol... 61 3e-08
ref|YP_327071.1| DNA-directed RNA polymerase subunit N [Nat... 61 3e-08
pir||S53015 DNA-directed RNA polymerase (EC 2.7.7.6) II cha... 61 3e-08
gb|EAM94256.1| RNA polymerases N/8 Kd subunits [Ferroplasma... 59 9e-08
ref|YP_134853.1| DNA-directed RNA polymerase subunit N [Hal... 59 2e-07
gb|AAT42910.1| DNA-directed RNA polymerase subunit N [Picro... 57 3e-07
ref|YP_447896.1| RpoN [Methanosphaera stadtmanae DSM 3091] ... 57 5e-07
gb|AAA34995.1| RNA polymerase II subunit RPB10 52 1e-05
emb|CAF30882.1| DNA-directed RNA polymerase, subunit N [Met... 52 1e-05
gb|AAR39185.1| NEQ338 [Nanoarchaeum equitans Kin4-M] >gi|73... 52 2e-05
sp|O26147|RPON_METTH DNA-directed RNA polymerase subunit N ... 52 2e-05
pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna... 51 3e-05
sp|Q57649|RPON_METJA DNA-directed RNA polymerase subunit N ... 50 6e-05
pir||E64324 DNA-directed RNA polymerase (EC 2.7.7.6) subuni... 50 6e-05
gb|AAF16632.1| T23J18.14 [Arabidopsis thaliana] 45 0.002
ref|YP_293920.1| putative DNA-directed RNA polymerase subun... 40 0.076
ref|NP_149570.1| 107L [Invertebrate iridescent virus 6] >gi... 34 4.1
emb|CAH03526.1| Lipid-binding protein, putative [Paramecium... 34 4.1
gb|AAN18089.1| At1g16470/F3O9_27 [Arabidopsis thaliana] >gi... 33 9.2
>gb|AAX96059.1| dna-directed rna polymerase ii 8.2 kda polypeptide (ec
2.7.7.6)(rpb10) (rp10) (abc10) [Oryza sativa (japonica
cultivar-group)]
gb|ABA91866.1| dna-directed rna polymerase ii 8.2 kda polypeptide [Oryza sativa
(japonica cultivar-group)]
Length = 74
Score = 143 bits (360), Expect = 5e-33
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWDLYLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTETS 295
NYNTLEKTET+
Sbjct: 61 NYNTLEKTETT 71
>ref|NP_849640.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
gb|AAM61374.1| RNA polymerase II subunit (hsRPB10), putative [Arabidopsis
thaliana]
dbj|BAC42977.1| putative RNA polymerase II subunit hsRPB10 [Arabidopsis thaliana]
Length = 71
Score = 137 bits (344), Expect = 3e-31
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTETS 295
NYNTLEK++ S
Sbjct: 61 NYNTLEKSDNS 71
>sp|Q39290|RPB10_BRANA DNA-directed RNA polymerase II 8.2 kDa polypeptide (RPB10) (RP10)
(ABC10)
gb|AAA21279.1| RNA polymerase II subunit RPB10 homolog; similar to yeast RNA
polymerase II subunit RPB10, Swiss-Prot Accession Number
P22139
Length = 71
Score = 136 bits (343), Expect = 5e-31
Identities = 63/71 (88%), Positives = 66/71 (92%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTETS 295
NYNTLEK++ S
Sbjct: 61 NYNTLEKSDNS 71
>ref|NP_176363.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
gb|AAD21426.1| Putative RNA polymerase II subunit Rpb10 [Arabidopsis thaliana]
sp|Q9SYA6|RPB10_ARATH DNA-directed RNA polymerase II 8.2 kDa polypeptide (RPB10) (RP10)
(ABC10)
Length = 71
Score = 133 bits (335), Expect = 4e-30
Identities = 60/69 (86%), Positives = 66/69 (95%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 327 NYNTLEKTE 301
NYNT+EK++
Sbjct: 61 NYNTMEKSD 69
>ref|XP_790633.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5)
[Strongylocentrotus purpuratus]
Length = 76
Score = 120 bits (302), Expect = 3e-26
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKV+GNKW+ YL LLQA+YSEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 10 MIIPVRCFTCGKVVGNKWEAYLGLLQAEYSEGDALDALGLKRYCCRRMLLAHVDLIEKLL 69
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 70 NYAPLEK 76
>ref|XP_697922.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Danio rerio]
Length = 178
Score = 119 bits (299), Expect = 6e-26
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML++HVDLIEKLL
Sbjct: 112 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 171
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 172 NYAPLEK 178
>ref|XP_645350.1| RNA polymerase I core subunit [Dictyostelium discoideum]
gb|EAL71452.1| RNA polymerases N/8 kDa subunit [Dictyostelium discoideum]
Length = 70
Score = 119 bits (299), Expect = 6e-26
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 327 NYNTL 313
NY L
Sbjct: 61 NYTPL 65
>gb|AAP92539.1| Ab1-108 [Rattus norvegicus]
Length = 323
Score = 119 bits (298), Expect = 7e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 257 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 316
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 317 NYAPLEK 323
>gb|EAA00426.2| ENSANGP00000020255 [Anopheles gambiae str. PEST]
ref|XP_320749.2| ENSANGP00000020255 [Anopheles gambiae str. PEST]
gb|ABB53243.1| DNA-directed RNA polymerase [Ixodes ricinus]
Length = 67
Score = 119 bits (298), Expect = 7e-26
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>ref|NP_001016343.1| hypothetical protein LOC549097 [Xenopus tropicalis]
ref|NP_066951.1| DNA directed RNA polymerase II polypeptide L [Homo sapiens]
gb|AAS59418.1| RNA polymerase polypeptide L [Chinchilla lanigera]
gb|AAI08228.1| Unknown (protein for MGC:133494) [Bos taurus]
dbj|BAE28747.1| unnamed protein product [Mus musculus]
dbj|BAE40122.1| unnamed protein product [Mus musculus]
emb|CAG38802.1| POLR2L [Homo sapiens]
dbj|BAB27338.1| unnamed protein product [Mus musculus]
gb|AAH97791.1| Unknown (protein for MGC:115502) [Xenopus laevis]
gb|AAX42106.1| polymerase II polypeptide L [synthetic construct]
gb|AAH18649.1| DNA directed RNA polymerase II polypeptide L [Homo sapiens]
sp|P62876|RPB10_MOUSE DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
(RPABC5)
sp|P62875|RPB10_HUMAN DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
(RPABC5)
emb|CAJ82315.1| polymerase (RNA) II (DNA directed) polypeptide L [Xenopus
tropicalis]
gb|AAH05903.1| POLR2L protein [Homo sapiens]
sp|Q6QN04|RPB10_CHILA DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
(RPABC5)
gb|AAA91459.1| RNA polymerase II subunit
prf||2208312A RNA polymerase:SUBUNIT=7.6kD
Length = 67
Score = 119 bits (298), Expect = 7e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>gb|AAX29564.1| polymerase [synthetic construct]
Length = 68
Score = 119 bits (298), Expect = 7e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>ref|XP_893115.1| PREDICTED: polymerase (RNA) II (DNA directed) polypeptide L [Mus
musculus]
ref|XP_922046.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Mus musculus]
Length = 88
Score = 119 bits (298), Expect = 7e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 22 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 81
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 82 NYAPLEK 88
>ref|XP_577849.1| PREDICTED: similar to Ab1-108 [Rattus norvegicus]
Length = 307
Score = 119 bits (298), Expect = 7e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 241 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 300
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 301 NYAPLEK 307
>ref|XP_521707.1| PREDICTED: similar to Ab1-108 [Pan troglodytes]
Length = 198
Score = 119 bits (298), Expect = 7e-26
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 132 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 191
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 192 NYAPLEK 198
>gb|AAH95745.1| Zgc:112305 protein [Danio rerio]
Length = 67
Score = 119 bits (297), Expect = 1e-25
Identities = 54/67 (80%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLPHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>ref|NP_651280.1| Rpb10 CG13628-PA [Drosophila melanogaster]
gb|AAM51044.1| SD08670p [Drosophila melanogaster]
gb|AAF56326.1| CG13628-PA [Drosophila melanogaster]
sp|Q9VC49|RPB10_DROME DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
gb|EAL26851.1| GA12420-PA [Drosophila pseudoobscura]
Length = 67
Score = 118 bits (296), Expect = 1e-25
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKVIGNKW+ YL LLQA+Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>ref|XP_922821.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Mus musculus]
ref|XP_896182.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Mus musculus]
Length = 72
Score = 118 bits (295), Expect = 2e-25
Identities = 54/67 (80%), Positives = 59/67 (88%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 6 MIIPVRCFTCGKIVGNKWEAYLGLLQAKYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 65
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 66 NYAPLEK 72
>emb|CAF99674.1| unnamed protein product [Tetraodon nigroviridis]
Length = 67
Score = 117 bits (294), Expect = 2e-25
Identities = 52/67 (77%), Positives = 61/67 (91%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGK++GNKW+ YL LLQ++Y+EGDALDAL L RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIVGNKWEAYLRLLQSEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>ref|NP_490923.1| Y37E3.3 [Caenorhabditis elegans]
gb|AAK27863.1| Hypothetical protein Y37E3.3 [Caenorhabditis elegans]
sp|Q9GR61|RPB10_CAEEL DNA-directed RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
emb|CAE74334.1| Hypothetical protein CBG22047 [Caenorhabditis briggsae]
Length = 67
Score = 117 bits (293), Expect = 3e-25
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKVIG+KW+ YL LQ++YSEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY+ LEK
Sbjct: 61 NYHPLEK 67
>gb|AAX30120.1| putative RNA polymerase subunit [Schistosoma japonicum]
Length = 67
Score = 114 bits (284), Expect = 3e-24
Identities = 49/67 (73%), Positives = 61/67 (91%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKV+G+KW+ Y+ LLQA+Y+EGDALD L L RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYIGLLQAEYAEGDALDTLGLRRYCCRRMLLSHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY+ L++
Sbjct: 61 NYSPLQR 67
>ref|XP_577644.1| PREDICTED: similar to Ab1-108 [Rattus norvegicus]
Length = 123
Score = 112 bits (279), Expect = 1e-23
Identities = 51/67 (76%), Positives = 58/67 (86%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EG ALDAL L YCCRR+L+ HVDLIEKLL
Sbjct: 57 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGHALDALGLKCYCCRRVLLAHVDLIEKLL 116
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 117 NYAPLEK 123
>emb|CAD21547.1| putative RNA polymerase subunit [Taenia solium]
Length = 67
Score = 110 bits (276), Expect = 3e-23
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGKV+G+KW+ YL LLQA+Y+E DALD L L RYCCRRM+++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYLVLLQAEYTEADALDTLGLRRYCCRRMILSHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY L+K
Sbjct: 61 NYAPLQK 67
>gb|AAO51490.1| similar to 60S ribosomal protein L32 [Caenorhabditis elegans]
[Dictyostelium discoideum]
Length = 206
Score = 110 bits (274), Expect = 5e-23
Identities = 51/61 (83%), Positives = 55/61 (90%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDAL+AL L +YCCRRML+THVDLIEKL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALNALCLKKYCCRRMLLTHVDLIEKLN 60
Query: 327 N 325
N
Sbjct: 61 N 61
>emb|CAB11246.1| rpb10 [Schizosaccharomyces pombe]
emb|CAA65049.1| DNA-directed RNA polymerase [Schizosaccharomyces pombe]
gb|AAC16895.1| RNA polymerases I, II and III subunit Rpb10 [Schizosaccharomyces
pombe]
ref|NP_594797.1| hypothetical protein SPAC1B3.12c [Schizosaccharomyces pombe 972h-]
gb|AAC49842.1| RNA polymerases I-III common subunit Rpb10 [Schizosaccharomyces
pombe]
sp|O13877|RPB10_SCHPO DNA-directed RNA polymerases I/II/III subunit 10 (DNA-directed RNA
polymerases I, II, and III 8.3 kDa polypeptide)
(ABC10-beta)
dbj|BAA22805.1| RNA polymerase II subunit Rpb10 [Schizosaccharomyces pombe]
Length = 71
Score = 109 bits (272), Expect = 8e-23
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCF+CGKVIG+KWD YL LLQ D +EG+ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 327 NYNTLEK 307
YN L K
Sbjct: 61 CYNPLSK 67
>ref|NP_113155.1| Putative RNA polymerase II subunit Rpb10 [Guillardia theta]
gb|AAK39726.1| Putative RNA polymerase II subunit Rpb10 [Guillardia theta]
Length = 71
Score = 108 bits (269), Expect = 2e-22
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGNKW++YL LL +YSE ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIIGNKWEIYLRLLNENYSESSALDTLGLQRYCCRRMILTHVDLIEKLL 60
Query: 327 NYN 319
YN
Sbjct: 61 QYN 63
>ref|XP_908369.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Mus musculus]
ref|XP_895065.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Mus musculus]
ref|XP_910626.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Mus musculus]
Length = 67
Score = 108 bits (269), Expect = 2e-22
Identities = 51/67 (76%), Positives = 56/67 (83%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCF CGK +GNK + YL LLQA+Y+EGDALDAL L RYCCRR L+ HVDLIEKLL
Sbjct: 1 MIIPVRCFICGKTVGNKREAYLGLLQAEYTEGDALDALGLKRYCCRRTLLAHVDLIEKLL 60
Query: 327 NYNTLEK 307
NY LEK
Sbjct: 61 NYAPLEK 67
>emb|CAG90875.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_462368.1| hypothetical protein DEHA0G20229g [Debaryomyces hansenii CBS767]
Length = 72
Score = 107 bits (266), Expect = 4e-22
Identities = 49/72 (68%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MIIPVRCF+CGKV+G+KW+ YL+ LQ D +EGDALD L+L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPVRCFSCGKVVGDKWETYLEYLQDDTMTEGDALDKLKLQRYCCRRMVLTHVDLIEKF 60
Query: 330 LNYNTLEKTETS 295
L YN LEK + +
Sbjct: 61 LRYNPLEKKDVN 72
>gb|AAW41770.1| DNA-directed RNA polymerases i, ii, and iii 8.3 kda polypeptide,
putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_569077.1| DNA-directed RNA polymerases i, ii, and iii 8.3 kda polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gb|EAL22327.1| hypothetical protein CNBB5020 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 69
Score = 105 bits (263), Expect = 9e-22
Identities = 48/67 (71%), Positives = 56/67 (83%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCF+CGKVIGN WD YL+LL A EG+A+D L+L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGNLWDSYLELLAAGVDEGEAMDKLQLKRYCCRRMVLTHVDLIEKLL 60
Query: 327 NYNTLEK 307
YN L +
Sbjct: 61 MYNPLAR 67
>gb|AAS56759.1| YOR210W [Saccharomyces cerevisiae]
ref|NP_014853.1| RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II,
and III; Rpb10p [Saccharomyces cerevisiae]
gb|AAB27020.1| RNA polymerase II subunit RPB10 [Saccharomyces cerevisiae]
gb|AAB59318.1| subunit ABC10beta [Saccharomyces cerevisiae]
sp|P22139|RPB10_YEAST DNA-directed RNA polymerases I/II/III subunit 10 (DNA-directed RNA
polymerases I, II, and III 8.3 kDa polypeptide)
(ABC10-beta) (ABC8)
pdb|2B63|J Chain J, Complete Rna Polymerase Ii-Rna Inhibitor Complex
emb|CAA99425.1| RPB10 [Saccharomyces cerevisiae]
pdb|1Y1Y|J Chain J, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|1Y1V|J Chain J, Refined Rna Polymerase Ii-Tfiis Complex
pdb|1Y77|J Chain J, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1W|J Chain J, Complete Rna Polymerase Ii Elongation Complex
pdb|1TWH|J Chain J, Rna Polymerase Ii Complexed With 2'datp
pdb|1TWG|J Chain J, Rna Polymerase Ii Complexed With Ctp
pdb|1TWF|J Chain J, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWC|J Chain J, Rna Polymerase Ii Complexed With Gtp
pdb|1TWA|J Chain J, Rna Polymerase Ii Complexed With Atp
pdb|1R9T|J Chain J, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1R9S|J Chain J, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1WCM|J Chain J, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1SFO|J Chain J, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R5U|J Chain J, Rna Polymerase Ii Tfiib Complex
pdb|1NIK|J Chain J, Wild Type Rna Polymerase Ii
pdb|1NT9|J Chain J, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|J Chain J, Rna Polymerase Ii-Tfiis Complex
pdb|1K83|J Chain J, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1I3Q|J Chain J, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I6H|J Chain J, Rna Polymerase Ii Elongation Complex
pdb|1I50|J Chain J, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
Length = 70
Score = 101 bits (252), Expect = 2e-20
Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MI+PVRCF+CGKV+G+KW+ YL+LLQ D EG AL L L RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 330 LNYNTLEKTE 301
L YN LEK +
Sbjct: 61 LRYNPLEKRD 70
>ref|XP_761334.1| hypothetical protein UM05187.1 [Ustilago maydis 521]
gb|EAK83061.1| hypothetical protein UM05187.1 [Ustilago maydis 521]
Length = 155
Score = 100 bits (249), Expect = 4e-20
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCF+CGKVIG+KW+ YL LL +EG+AL L+L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLALLLDGRTEGEALTELDLKRYCCRRMVLTHVDLIEKLL 60
Query: 327 NYNT 316
+YNT
Sbjct: 61 HYNT 64
>gb|AAS51389.1| ACR163Wp [Ashbya gossypii ATCC 10895]
ref|NP_983565.1| ACR163Wp [Eremothecium gossypii]
sp|Q75BV8|RPB10_ASHGO DNA-directed RNA polymerases I/II/III subunit 10
Length = 70
Score = 99.8 bits (247), Expect = 6e-20
Identities = 45/70 (64%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL L L RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 330 LNYNTLEKTE 301
L YN LEK +
Sbjct: 61 LRYNPLEKRD 70
>ref|XP_764803.1| DNA-directed RNA polymerase subunit N [Theileria parva strain
Muguga]
gb|EAN32520.1| DNA-directed RNA polymerase subunit N, putative [Theileria parva]
Length = 87
Score = 99.8 bits (247), Expect = 6e-20
Identities = 45/64 (70%), Positives = 54/64 (84%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIG+ W+ +L++L+ D EG ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGHLWEKWLEMLKKDIPEGQALDDLGLTRYCCRRMILTHVDLIEKLL 60
Query: 327 NYNT 316
YN+
Sbjct: 61 VYNS 64
>ref|XP_453359.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00455.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 70
Score = 99.4 bits (246), Expect = 8e-20
Identities = 45/70 (64%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL L L RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
Query: 330 LNYNTLEKTE 301
L YN LEK +
Sbjct: 61 LRYNPLEKRD 70
>gb|ABA27170.1| RNA polymerase II subunit RPB10 [Bigelowiella natans]
Length = 65
Score = 99.4 bits (246), Expect = 8e-20
Identities = 42/65 (64%), Positives = 55/65 (84%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IP+RCF+CGKVI W YL+L++ +SEG++LDAL + RYCCRRML++HVD+IEKLL
Sbjct: 1 MLIPIRCFSCGKVIAGSWLEYLELIKIGFSEGESLDALRMNRYCCRRMLLSHVDIIEKLL 60
Query: 327 NYNTL 313
NYN L
Sbjct: 61 NYNLL 65
>ref|XP_426406.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Gallus gallus]
Length = 1288
Score = 99.0 bits (245), Expect = 1e-19
Identities = 51/78 (65%), Positives = 57/78 (73%), Gaps = 11/78 (14%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLD----LLQAD-------YSEGDALDALELFRYCCRRML 361
MIIPVRCFTCGK++GNKW+ L +L AD Y +GDALDAL L RYCCRRML
Sbjct: 1211 MIIPVRCFTCGKIVGNKWEAALQRCLRVLLADRLFPPDWYCKGDALDALGLKRYCCRRML 1270
Query: 360 MTHVDLIEKLLNYNTLEK 307
+ HVDLIEKLLNY LEK
Sbjct: 1271 LAHVDLIEKLLNYAPLEK 1288
>ref|XP_746670.1| RNA polymerases N / 8 kDa subunit [Aspergillus fumigatus Af293]
gb|EAL84632.1| RNA polymerases N / 8 kDa subunit superfamily [Aspergillus
fumigatus Af293]
Length = 140
Score = 94.4 bits (233), Expect = 3e-18
Identities = 42/62 (67%), Positives = 49/62 (79%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCF+CGKV+G+ W+ YL LL +GDA+D L RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGIPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 327 NY 322
Y
Sbjct: 61 RY 62
>emb|CAE76459.1| probable DNA-directed RNA polymerase II chain RPB10 [Neurospora
crassa]
ref|XP_965008.1| hypothetical protein [Neurospora crassa N150]
ref|XP_331804.1| hypothetical protein [Neurospora crassa]
gb|EAA35772.1| hypothetical protein [Neurospora crassa]
Length = 84
Score = 93.6 bits (231), Expect = 4e-18
Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MIIP+RCF+CGKV+G+ W+ YL L+ + ++GDALD L L RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVVGDLWERYLQLIDGEEITDGDALDQLGLKRYCCRRMVMTHVDLIEKL 60
Query: 330 LNY 322
L Y
Sbjct: 61 LKY 63
>ref|XP_673919.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide [Plasmodium
berghei strain ANKA]
ref|XP_729160.1| RNA polymerase II subunit Rpb10 [Plasmodium yoelii yoelii str.
17XNL]
ref|XP_740775.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide [Plasmodium
chabaudi chabaudi]
gb|EAA20725.1| Putative RNA polymerase II subunit Rpb10 [Plasmodium yoelii yoelii]
emb|CAH80812.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium chabaudi]
emb|CAI02143.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium berghei]
Length = 69
Score = 92.8 bits (229), Expect = 8e-18
Identities = 42/67 (62%), Positives = 50/67 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGN W LY L S+ DALD L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLYEKKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 60
Query: 327 NYNTLEK 307
YN E+
Sbjct: 61 CYNIYER 67
>emb|CAD50833.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium falciparum 3D7]
ref|NP_704025.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium falciparum 3D7]
Length = 69
Score = 92.4 bits (228), Expect = 1e-17
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGN W +Y L+ S+ DAL+ L L+RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query: 327 NYNTLEK 307
YN E+
Sbjct: 61 CYNIYER 67
>ref|XP_680452.1| hypothetical protein PB001541.02.0 [Plasmodium berghei strain ANKA]
emb|CAH98929.1| hypothetical protein PB001541.02.0 [Plasmodium berghei]
Length = 68
Score = 90.5 bits (223), Expect = 4e-17
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGK+IGN W LY + L S+ DALD L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLY-EKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 59
Query: 327 NYNTLEK 307
YN E+
Sbjct: 60 CYNIYER 66
>gb|EAQ93466.1| hypothetical protein CHGG_01701 [Chaetomium globosum CBS 148.51]
Length = 82
Score = 90.1 bits (222), Expect = 5e-17
Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD-YSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
MIIP+RCF+CGKV G+ W+ ++ L++ D S+GDALD L RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWEKFVKLIEEDGLSDGDALDQLGCKRYCCRRMVMTHVDLIEKL 60
Query: 330 LNY 322
L Y
Sbjct: 61 LKY 63
>ref|XP_805591.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gb|EAN83740.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 84
Score = 87.8 bits (216), Expect = 2e-16
Identities = 36/63 (57%), Positives = 53/63 (84%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IPVRC++CGKVIGN ++ Y LL DY+E +AL+AL+L R CCRRM+++H+DL+++LL
Sbjct: 1 MLIPVRCYSCGKVIGNLYEKYQQLLSEDYTEAEALNALQLDRMCCRRMILSHIDLVDELL 60
Query: 327 NYN 319
Y+
Sbjct: 61 PYS 63
>ref|XP_810368.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gb|EAN88517.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 84
Score = 87.4 bits (215), Expect = 3e-16
Identities = 36/63 (57%), Positives = 52/63 (82%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IPVRC++CGKVIGN ++ Y LL DY+E +AL+AL+L R CCRRM+++H+DL++ LL
Sbjct: 1 MLIPVRCYSCGKVIGNLYETYQQLLSEDYTEAEALNALQLDRMCCRRMILSHIDLVDDLL 60
Query: 327 NYN 319
Y+
Sbjct: 61 PYS 63
>emb|CAJ02972.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative
[Leishmania major]
Length = 89
Score = 85.5 bits (210), Expect = 1e-15
Identities = 38/63 (60%), Positives = 49/63 (77%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCG VI +K+ LYLDL+ SE DA++A L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 327 NYN 319
+N
Sbjct: 61 KFN 63
>gb|ABA95940.1| dna-directed rna polymerase ii 8.2 kda polypeptide, putative [Oryza
sativa (japonica cultivar-group)]
Length = 202
Score = 84.7 bits (208), Expect = 2e-15
Identities = 49/94 (52%), Positives = 50/94 (53%), Gaps = 42/94 (44%)
Frame = -3
Query: 474 KVIGNKWDLYLDLLQADYSEG--------------------------------------- 412
KVIGNKWDLYLDLLQADY+EG
Sbjct: 93 KVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGRRLADGDADLSV 152
Query: 411 ---DALDALELFRYCCRRMLMTHVDLIEKLLNYN 319
DALDAL L RYCCRRMLMTHVDLIEKLLNYN
Sbjct: 153 HMWDALDALGLVRYCCRRMLMTHVDLIEKLLNYN 186
>gb|AAX69569.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gb|AAZ10160.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
ref|XP_823789.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
Length = 84
Score = 84.0 bits (206), Expect = 3e-15
Identities = 34/63 (53%), Positives = 52/63 (82%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IPVRC++CGKV+G+ ++LY +LL D++E +AL+AL L R CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 327 NYN 319
Y+
Sbjct: 61 PYS 63
>emb|CAJ43708.1| RNA polymerase I subunit 1RPB10 [Trypanosoma brucei brucei]
Length = 84
Score = 84.0 bits (206), Expect = 3e-15
Identities = 34/63 (53%), Positives = 52/63 (82%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IPVRC++CGKV+G+ ++LY +LL D++E +AL+AL L R CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 327 NYN 319
Y+
Sbjct: 61 PYS 63
>ref|XP_815345.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide [Trypanosoma
cruzi]
gb|EAN93494.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative
[Trypanosoma cruzi]
Length = 77
Score = 82.8 bits (203), Expect = 8e-15
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCG VI +K+ LYLDL+ SE ALDA L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGVSEEAALDAFNLQRFCCRRMFLTHVDFSDLLL 60
Query: 327 NYN 319
+N
Sbjct: 61 KFN 63
>ref|XP_803070.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gb|EAN81624.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 77
Score = 82.8 bits (203), Expect = 8e-15
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCG VI +K+ LYLDL+ SE ALDA L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGVSEEAALDAFNLQRFCCRRMFLTHVDFSDLLL 60
Query: 327 NYN 319
+N
Sbjct: 61 KFN 63
>ref|NP_585788.1| DNA-DIRECTED RNA POLYMERASE II 8.2kDa POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
emb|CAD25392.1| DNA-DIRECTED RNA POLYMERASE II 8.2kDa POLYPEPTIDE [Encephalitozoon
cuniculi GB-M1]
sp|Q8SRS6|RPB10_ENCCU DNA-directed RNA polymerases I/II/III subunit 10
Length = 72
Score = 82.4 bits (202), Expect = 1e-14
Identities = 34/66 (51%), Positives = 50/66 (75%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGK I +KW+ Y +LL+ D + +ALD L + R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 327 NYNTLE 310
++ ++
Sbjct: 61 KFDIVK 66
>gb|AAM02691.1| DNA-directed RNA polymerase, subunit N [Methanopyrus kandleri AV19]
ref|NP_614761.1| DNA-directed RNA polymerase subunit N [Methanopyrus kandleri AV19]
sp|Q8TVB4|RPON_METKA DNA-directed RNA polymerase subunit N
Length = 72
Score = 78.2 bits (191), Expect = 2e-13
Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSE-GDALDALELFRYCCRRMLMTHVDLIEKL 331
MIIP+RCFTCG+ I + W+ Y++L++ + E G+ALD L + RYCCRRM ++HVDL+E+
Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEES 60
Query: 330 LNY 322
L Y
Sbjct: 61 LPY 63
>gb|AAM77740.1| RNA polymerase II subunit Rpb10 [Giardia intestinalis]
Length = 84
Score = 77.4 bits (189), Expect = 3e-13
Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 9/71 (12%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGD---------ALDALELFRYCCRRMLMT 355
MIIPVRCFTCGKVIG+ ++ YL LL +E ALD L L RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 60
Query: 354 HVDLIEKLLNY 322
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLY 71
>ref|XP_766835.1| RNA polymerase II subunit Rpb10 [Giardia lamblia ATCC 50803]
gb|EAA36688.1| GLP_474_3411_3043 [Giardia lamblia ATCC 50803]
Length = 122
Score = 77.4 bits (189), Expect = 3e-13
Identities = 42/71 (59%), Positives = 48/71 (67%), Gaps = 9/71 (12%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGD---------ALDALELFRYCCRRMLMT 355
MIIPVRCFTCGKVIG+ ++ YL LL +E ALD L L RYCCRRML+T
Sbjct: 39 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 98
Query: 354 HVDLIEKLLNY 322
HVDLI+ LL Y
Sbjct: 99 HVDLIDDLLLY 109
>dbj|BAB67162.1| 66aa long hypothetical DNA-directed RNA polymerase subunit N
[Sulfolobus tokodaii str. 7]
sp|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N
ref|NP_378053.1| DNA-directed RNA polymerase subunit N [Sulfolobus tokodaii str. 7]
Length = 66
Score = 77.4 bits (189), Expect = 3e-13
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCG +IG+KW+ ++ + G LD L + RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>gb|AAK40429.1| DNA-directed RNA polymerase, subunit N (rpoN) [Sulfolobus
solfataricus P2]
ref|NP_341639.1| DNA-directed RNA polymerase subunit N [Sulfolobus solfataricus P2]
sp|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N
pir||F90146 DNA-directed RNA polymerase, subunit N (rpoN) [imported] -
Sulfolobus solfataricus
Length = 66
Score = 76.3 bits (186), Expect = 7e-13
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IP+RCFTCG +I +KW ++ + A + G LD L + RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>gb|EAR94151.1| RNA polymerases N / 8 kDa subunit family protein [Tetrahymena
thermophila SB210]
Length = 64
Score = 75.9 bits (185), Expect = 1e-12
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKV+G+ W+ +L ++ S + D +YCCRRM++TH DLI+KLL
Sbjct: 1 MIIPVRCFTCGKVVGHMWNDFLQMISE--SNPNKKD----MKYCCRRMILTHCDLIDKLL 54
Query: 327 NYNTL 313
NYN +
Sbjct: 55 NYNKI 59
>sp|O59298|RPON_PYRHO DNA-directed RNA polymerase subunit N
Length = 65
Score = 73.9 bits (180), Expect = 4e-12
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIPVRCFTCGKVIG+K+ + ++A LD L L RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>emb|CAB49456.1| rpoN DNA-directed RNA polymerase, subunit N [Pyrococcus abyssi GE5]
ref|NP_126225.1| DNA-directed RNA polymerase subunit N [Pyrococcus abyssi GE5]
sp|P60291|RPON_PYRAB DNA-directed RNA polymerase subunit N
sp|P60292|RPON_PYRFU DNA-directed RNA polymerase subunit N
Length = 65
Score = 73.6 bits (179), Expect = 5e-12
Identities = 33/62 (53%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MI+PVRCFTCGKVIG+K+ + ++A LD L L RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>dbj|BAA30744.1| 119aa long hypothetical DNA-directed RNA polymerase subunit N
[Pyrococcus horikoshii OT3]
ref|NP_143484.1| DNA-directed RNA polymerase subunit N [Pyrococcus horikoshii OT3]
pir||H71042 probable DNA-directed RNA polymerase subunit N - Pyrococcus
horikoshii
Length = 119
Score = 72.8 bits (177), Expect = 8e-12
Identities = 33/62 (53%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
+IIPVRCFTCGKVIG+K+ + ++A LD L L RYCCRRML++HV+LI+ ++
Sbjct: 55 LIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 114
Query: 327 NY 322
+Y
Sbjct: 115 HY 116
>gb|AAL81767.1| DNA-directed RNA polymerase subunit n [Pyrococcus furiosus DSM
3638]
ref|NP_579372.1| DNA-directed RNA polymerase subunit N [Pyrococcus furiosus DSM
3638]
Length = 70
Score = 72.0 bits (175), Expect = 1e-11
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
+I+PVRCFTCGKVIG+K+ + ++A LD L L RYCCRRML++HV+LI+ ++
Sbjct: 6 VIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 65
Query: 327 NY 322
+Y
Sbjct: 66 HY 67
>ref|XP_654226.1| DNA-directed RNA polymerase subunit N [Entamoeba histolytica
HM-1:IMSS]
gb|EAL48839.1| DNA-directed RNA polymerase subunit N, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 73
Score = 71.2 bits (173), Expect = 2e-11
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGD-ALDALELFRYCCRRMLMTHVDLIEKL 331
MIIPVRCFTCGKVIGNKW+ +L+L D L + RYCC+RML++HV+LI L
Sbjct: 1 MIIPVRCFTCGKVIGNKWEKFLELATGGKVPMDQVFSELGIERYCCKRMLVSHVNLIGFL 60
Query: 330 LNYN 319
Y+
Sbjct: 61 SMYD 64
>gb|AAZ70384.1| DNA-directed RNA polymerase subunit N [Methanosarcina barkeri str.
fusaro]
ref|YP_304964.1| DNA-directed RNA polymerase subunit N [Methanosarcina barkeri str.
fusaro]
Length = 62
Score = 69.3 bits (168), Expect = 9e-11
Identities = 31/61 (50%), Positives = 41/61 (67%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCF+CGKVI N WD Y + + LD L + RYCCRRML++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>dbj|BAD85688.1| DNA-directed RNA polymerase subunit N [Thermococcus kodakarensis
KOD1]
ref|YP_183912.1| DNA-directed RNA polymerase subunit N [Thermococcus kodakarensis
KOD1]
sp|Q5JJC9|RPON_PYRKO DNA-directed RNA polymerase subunit N
Length = 65
Score = 69.3 bits (168), Expect = 9e-11
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MI+PVRCFTCGKV+ +K+ + ++A G LD L + RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 327 NY 322
Y
Sbjct: 61 VY 62
>ref|ZP_01154317.1| RNA polymerases N/8 Kd subunits [Methanosaeta thermophila PT]
gb|EAR48091.1| RNA polymerases N/8 Kd subunits [Methanosaeta thermophila PT]
Length = 61
Score = 68.6 bits (166), Expect = 2e-10
Identities = 29/61 (47%), Positives = 45/61 (73%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCF+CGKVI + W+ Y + ++++ G +D L + RYCCRRML++HV+++E L
Sbjct: 1 MIPVRCFSCGKVISSVWEEYRERIKSE-PPGKVMDDLGIERYCCRRMLLSHVEVVEMLRR 59
Query: 324 Y 322
Y
Sbjct: 60 Y 60
>emb|CAA56484.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
gb|AAY79514.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
DSM 639]
sp|P39472|RPON_SULAC DNA-directed RNA polymerase subunit N
ref|YP_254807.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
DSM 639]
Length = 66
Score = 68.2 bits (165), Expect = 2e-10
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCG V+ +KW+ + + + L L + RYCCRRML++HV++I +++
Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREII 60
Query: 327 NY 322
+Y
Sbjct: 61 HY 62
>gb|AAM04042.1| DNA-directed RNA polymerase, subunit N [Methanosarcina acetivorans
C2A]
ref|NP_615562.1| DNA-directed RNA polymerase subunit N [Methanosarcina acetivorans
C2A]
sp|Q8TT41|RPON_METAC DNA-directed RNA polymerase subunit N
Length = 62
Score = 67.4 bits (163), Expect = 3e-10
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCF+CGKVI N WD Y + LD L + RYCCRRM ++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>ref|NP_633782.1| DNA-directed RNA polymerase subunit N [Methanosarcina mazei Go1]
sp|Q8PW43|RPON_METMA DNA-directed RNA polymerase subunit N
gb|AAM31454.1| DNA-directed RNA polymerase subunit N [Methanosarcina mazei Go1]
Length = 62
Score = 67.4 bits (163), Expect = 3e-10
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCF+CGKVI N WD Y + LD L + RYCCRRM ++HV+LI+ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>dbj|BAA80751.1| 77aa long hypothetical DNA-directed RNA polymerase, subunit N
[Aeropyrum pernix K1]
sp|Q9YB47|RPON_AERPE DNA-directed RNA polymerase subunit N
ref|NP_148142.1| DNA-directed RNA polymerase subunit N [Aeropyrum pernix K1]
Length = 77
Score = 65.5 bits (158), Expect = 1e-09
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+ PVRCFTCG+ +G+ W + +L+ + + G+ALD L + RYCCRR L T V IE
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 327 NY 322
Y
Sbjct: 61 KY 62
>ref|ZP_00563999.1| RNA polymerases N/8 Kd subunits [Methanococcoides burtonii DSM
6242]
gb|EAM99046.1| RNA polymerases N/8 Kd subunits [Methanococcoides burtonii DSM
6242]
Length = 62
Score = 65.5 bits (158), Expect = 1e-09
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCFTCGKVI W+ Y LD L+ RYCCRRM + HV+L++ +
Sbjct: 1 MIPVRCFTCGKVIAGSWEEYKRRTGEGEDPATVLDDLKFVRYCCRRMFLAHVELVDTMAP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>gb|AAL62944.1| DNA-directed RNA polymerase subunit N (rpoN) [Pyrobaculum
aerophilum str. IM2]
ref|NP_558762.1| DNA-directed RNA polymerase subunit N [Pyrobaculum aerophilum str.
IM2]
sp|Q8ZYP9|RPON_PYRAE DNA-directed RNA polymerase subunit N
Length = 66
Score = 64.7 bits (156), Expect = 2e-09
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MIIP+RCFTCGK +G+ + ++ + A G LD L + RYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPIRCFTCGKPLGHLYAVFKRRVLAGEHPGRVLDDLGVTRYCCRRTLMAHVEWIDDVL 60
Query: 327 NY 322
Y
Sbjct: 61 LY 62
>gb|ABB82963.1| DNA-directed RNA polymerase subunit N [uncultured organism
HF70_19B12]
Length = 68
Score = 64.3 bits (155), Expect = 3e-09
Identities = 27/63 (42%), Positives = 42/63 (66%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
M+IPVRC++CGKV+ + + Y++ A + LD L L RYCCRRM + H+DLI+ +
Sbjct: 1 MLIPVRCWSCGKVVAHLYKKYVERTAAGEDPQEVLDDLALSRYCCRRMFVGHIDLIDDIA 60
Query: 327 NYN 319
++
Sbjct: 61 PFS 63
>ref|NP_069959.1| DNA-directed RNA polymerase subunit N [Archaeoglobus fulgidus DSM
4304]
sp|O29135|RPON_ARCFU DNA-directed RNA polymerase subunit N
gb|AAB90120.1| DNA-directed RNA polymerase, subunit N (rpoN) [Archaeoglobus
fulgidus DSM 4304]
Length = 76
Score = 63.5 bits (153), Expect = 5e-09
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = -3
Query: 498 PVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYN 319
P+RCF+CG VIG+ +D Y L S +ALD L + RYCCRRM +TH +I++L ++
Sbjct: 13 PIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRFH 72
>ref|XP_426407.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Gallus gallus]
Length = 142
Score = 63.2 bits (152), Expect = 6e-09
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -3
Query: 414 GDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEK 307
GDALDAL L RYCCRRML+ HVDLIEKLLNY LEK
Sbjct: 107 GDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 142
>ref|XP_874715.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Bos taurus]
Length = 158
Score = 63.2 bits (152), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEG 412
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EG
Sbjct: 127 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 158
>emb|CAA87658.1| RNA polymerase II subunit [Homo sapiens]
emb|CAA87657.1| RNA polymerase II subunit [Homo sapiens]
Length = 32
Score = 63.2 bits (152), Expect = 6e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEG 412
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EG
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 32
>dbj|BAB60303.1| DNA-directed RNA polymerase N [Thermoplasma volcanium GSS1]
sp|Q979K0|RPON_THEVO DNA-directed RNA polymerase subunit N
ref|NP_111656.1| DNA-directed RNA polymerase subunit N [Thermoplasma volcanium GSS1]
Length = 72
Score = 62.8 bits (151), Expect = 8e-09
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEG---------DALDALELFRYCCRRMLMT 355
MIIPVRCF+CG+VI + + YL + SEG D L + RYCCRRM+++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYLRRINEIRSEGREPTAEEIEKIFDDLGVERYCCRRMIIS 60
Query: 354 HVDLIEKLLNYN 319
HVDLI +++ ++
Sbjct: 61 HVDLINEIMPFS 72
>gb|AAG19524.1| DNA-directed RNA polymerase subunit N; RpoN [Halobacterium sp.
NRC-1]
sp|Q9HQJ1|RPON_HALSA DNA-directed RNA polymerase subunit N
ref|NP_280044.1| DNA-directed RNA polymerase subunit N [Halobacterium sp. NRC-1]
Length = 66
Score = 62.4 bits (150), Expect = 1e-08
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLY---LDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 337
M++PVRCF+CG V+G W+ + + D D LD L + R+CCRRML+ H DL++
Sbjct: 1 MMVPVRCFSCGTVVGEHWEAFKARAETHDGDEDPADVLDDLGVDRHCCRRMLIAHQDLVD 60
Query: 336 KLLNY 322
+ Y
Sbjct: 61 VVSPY 65
>ref|YP_504306.1| RNA polymerases N/8 Kd subunits [Methanospirillum hungatei JF-1]
gb|ABD42587.1| RNA polymerases N/8 Kd subunits [Methanospirillum hungatei JF-1]
Length = 62
Score = 61.6 bits (148), Expect = 2e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLN 325
+IPVRCFTCGKVI ++ + A LD L + RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISTAYEEFKRRRDASEDPKRILDDLGMDRYCCRRMLLTHKEIIDELNP 60
Query: 324 Y 322
Y
Sbjct: 61 Y 61
>emb|CAC11573.1| DNA-directed RNA polymerase, chain N related protein [Thermoplasma
acidophilum]
ref|NP_393909.1| DNA-directed RNA polymerase subunit N [Thermoplasma acidophilum DSM
1728]
sp|Q9HL09|RPON_THEAC DNA-directed RNA polymerase subunit N
Length = 72
Score = 61.2 bits (147), Expect = 2e-08
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEG---------DALDALELFRYCCRRMLMT 355
MIIPVRCF+CG+VI + + Y+ + +EG D L + RYCCRRM+++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYIKRVNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVS 60
Query: 354 HVDLIEKLLNYN 319
HVDLI +++ ++
Sbjct: 61 HVDLISEIMPFS 72
>ref|XP_854177.1| PREDICTED: similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) [Canis familiaris]
Length = 154
Score = 60.8 bits (146), Expect = 3e-08
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = -3
Query: 411 DALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEK 307
DALDAL L RYCCRRML+ HVDLIEKLLNY LEK
Sbjct: 120 DALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 154
>ref|YP_327071.1| DNA-directed RNA polymerase subunit N [Natronomonas pharaonis DSM
2160]
emb|CAI49512.1| DNA-directed RNA polymerase subunit N [Natronomonas pharaonis DSM
2160]
Length = 64
Score = 60.8 bits (146), Expect = 3e-08
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLD-LLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
M++PVRCFTCG V+G W + + + D + LD L + R CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVGEHWGEFKERAREGDEDPAEVLDELGVERACCRRMLVSHKDLVDIV 60
Query: 330 LNY 322
Y
Sbjct: 61 SPY 63
>pir||S53015 DNA-directed RNA polymerase (EC 2.7.7.6) II chain RPB7.0 - human
(fragment)
Length = 31
Score = 60.8 bits (146), Expect = 3e-08
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSE 415
MIIPVRCFTCGK++GNKW+ YL LLQA+Y+E
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTE 31
>gb|EAM94256.1| RNA polymerases N/8 Kd subunits [Ferroplasma acidarmanus Fer1]
ref|ZP_00609273.1| RNA polymerases N/8 Kd subunits [Ferroplasma acidarmanus Fer1]
Length = 73
Score = 59.3 bits (142), Expect = 9e-08
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQ----------ADYSEGDALDALELFRYCCRRMLM 358
MIIPVRCF+CGKVIG+ + +++ + + + LD L + RYCCRRM++
Sbjct: 1 MIIPVRCFSCGKVIGSDYVRFVEESKKIRKDTGHDPTGKEKSEILDNLGVDRYCCRRMIL 60
Query: 357 THVDLIEKLLNYN 319
++ DL++++++Y+
Sbjct: 61 SNADLLDEVISYS 73
>ref|YP_134853.1| DNA-directed RNA polymerase subunit N [Haloarcula marismortui ATCC
43049]
gb|AAV45147.1| DNA-directed RNA polymerase subunit N [Haloarcula marismortui ATCC
43049]
sp|P29199|RPON_HALMA DNA-directed RNA polymerase subunit N
gb|AAA73099.1| OrfMMV
Length = 66
Score = 58.5 bits (140), Expect = 2e-07
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGD---ALDALELFRYCCRRMLMTHVDLIE 337
M++PVRCFTCG V+G W+ + + D LD L + R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 336 KLLNY 322
+ Y
Sbjct: 61 IVSPY 65
>gb|AAT42910.1| DNA-directed RNA polymerase subunit N [Picrophilus torridus DSM
9790]
sp|Q6L292|RPON_PICTO DNA-directed RNA polymerase subunit N
ref|YP_023103.1| DNA-directed RNA polymerase subunit N [Picrophilus torridus DSM
9790]
Length = 72
Score = 57.4 bits (137), Expect = 3e-07
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSE----------GDALDALELFRYCCRRMLM 358
MIIPVRCF+CG+VI + + + + +E LD L + RYCCRRM++
Sbjct: 1 MIIPVRCFSCGRVIASDYVRFTEACTKIINETGREPRGEEKAKILDDLGVKRYCCRRMIL 60
Query: 357 THVDLIEKLLNY 322
+H DLI+++L Y
Sbjct: 61 SHKDLIDEVLPY 72
>ref|YP_447896.1| RpoN [Methanosphaera stadtmanae DSM 3091]
gb|ABC57253.1| RpoN [Methanosphaera stadtmanae DSM 3091]
Length = 55
Score = 57.0 bits (136), Expect = 5e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = -3
Query: 495 VRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDL 343
VRCFTCGKVI +D + +A + D LD L + +YCCRRM ++HVD+
Sbjct: 4 VRCFTCGKVISASFDEFEKRTKAGENPNDVLDDLGITKYCCRRMFISHVDV 54
>gb|AAA34995.1| RNA polymerase II subunit RPB10
Length = 46
Score = 52.4 bits (124), Expect = 1e-05
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQAD 424
MI+PVRCF+CGKV+G+KW+ YL+LLQ D
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQED 28
>emb|CAF30882.1| DNA-directed RNA polymerase, subunit N [Methanococcus maripaludis
S2]
ref|NP_988446.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
S2]
sp|Q6LXM4|RPON_METMP DNA-directed RNA polymerase subunit N
Length = 68
Score = 52.4 bits (124), Expect = 1e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTH 352
MI P+RCF+CG VI ++ Y L+ + + L+ LE+ +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASH 52
>gb|AAR39185.1| NEQ338 [Nanoarchaeum equitans Kin4-M]
sp|Q74MB5|RPON_NANEQ DNA-directed RNA polymerase subunit N
ref|NP_963624.1| DNA-directed RNA polymerase subunit N [Nanoarchaeum equitans
Kin4-M]
Length = 65
Score = 51.6 bits (122), Expect = 2e-05
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHV 349
M+ P+RCF+CGK +G+ W+ + + + LD L L RYCCRR L++ V
Sbjct: 1 MLPPIRCFSCGKPLGHLWEEFNERVNKGEDPKKVLDDLGLERYCCRRTLLSAV 53
>sp|O26147|RPON_METTH DNA-directed RNA polymerase subunit N (RPB10)
gb|AAB84548.1| DNA-dependent RNA polymerase, subunit N [Methanothermobacter
thermautotrophicus str. Delta H]
ref|NP_275184.1| DNA-directed RNA polymerase subunit N [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 55
Score = 51.6 bits (122), Expect = 2e-05
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = -3
Query: 504 IIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVD 346
+IPVRC +CGK + ++ Y + D LD L L RYCCRRML++HV+
Sbjct: 1 MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna Polymerase Subunit
Rpb10 From Methanobacterium Thermoautotrophicum
Length = 55
Score = 51.2 bits (121), Expect = 3e-05
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -3
Query: 501 IPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVD 346
IPVRC +CGK + ++ Y + D LD L L RYCCRRML++HV+
Sbjct: 2 IPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>sp|Q57649|RPON_METJA DNA-directed RNA polymerase subunit N
gb|AAB98176.1| DNA-directed RNA polymerase, subunit N (rpoN) [Methanocaldococcus
jannaschii DSM 2661]
ref|NP_247164.1| DNA-directed RNA polymerase subunit N [Methanocaldococcus
jannaschii DSM 2661]
Length = 73
Score = 50.1 bits (118), Expect = 6e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTH 352
M+ P+RCF+CG VI ++ Y + + + D LD L + +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISY 52
>pir||E64324 DNA-directed RNA polymerase (EC 2.7.7.6) subunit N - Methanococcus
jannaschii
Length = 76
Score = 50.1 bits (118), Expect = 6e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTH 352
M+ P+RCF+CG VI ++ Y + + + D LD L + +YCCRRM +++
Sbjct: 4 MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISY 55
>gb|AAF16632.1| T23J18.14 [Arabidopsis thaliana]
Length = 428
Score = 44.7 bits (104), Expect = 0.002
Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Frame = -3
Query: 471 VIGNKWDLYLDLLQADYSEGDALDALELF----RYCC 373
VIGNKWD YLDLLQ DY+EG L L+ YCC
Sbjct: 388 VIGNKWDQYLDLLQLDYTEGVKLMLCSLYVIGTDYCC 424
>ref|YP_293920.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
emb|CAI65589.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
Length = 86
Score = 39.7 bits (91), Expect = 0.076
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -3
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLM 358
M+ P+RC TC +I K+ Y + L+ S+ DAL + + YCCRRM +
Sbjct: 1 MLPPIRCCTCNDLI--KFREYDEQLRNKSSQSDALSNIGVKMYCCRRMYL 48
>ref|NP_149570.1| 107L [Invertebrate iridescent virus 6]
gb|AAB94436.1| 107L [Chilo iridescent virus]
Length = 80
Score = 33.9 bits (76), Expect = 4.1
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 498 PVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRY---CCRRMLMTHVDLIEKLL 328
P+RCF+C K++ + + + ++ + + D + F Y CC+RM ++ V+ ++L
Sbjct: 3 PIRCFSCNKIMKSPNEKGMVFVR-NMKKEDREQFFKKFNYTRLCCKRMYLSAVNFQDELF 61
Query: 327 NYNTLEKT 304
Y T
Sbjct: 62 QYENARST 69
>emb|CAH03526.1| Lipid-binding protein, putative [Paramecium tetraurelia]
ref|YP_054257.1| Lipid-binding protein, putative [Paramecium tetraurelia]
Length = 631
Score = 33.9 bits (76), Expect = 4.1
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = -2
Query: 253 RSIIYIV--GGMLFLLYQDSGE----DCCECELAFALEHSRTDKCMLHLCYDVGDFNRYN 92
+++I I+ GG L L+ S E DCC+C ++ KC+L Y DF R N
Sbjct: 185 QNVITIIQKGGKLLDLFIKSSEVHEIDCCQCHQDVWHFNNDGKKCVLESKYIQFDFQRNN 244
Query: 91 G*LILSVSLSQFIIRLAFLHRKKKKKS 11
+ S+SQ + + K+++K+
Sbjct: 245 SFFLTRESISQGKFPMVITNDKQQQKN 271
>gb|AAN18089.1| At1g16470/F3O9_27 [Arabidopsis thaliana]
gb|AAK95291.1| At1g16470/F3O9_27 [Arabidopsis thaliana]
Length = 99
Score = 32.7 bits (73), Expect = 9.2
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3
Query: 507 MIIPVRCFTCGKV 469
MIIPVRCFTCGKV
Sbjct: 1 MIIPVRCFTCGKV 13
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,080,342,371
Number of Sequences: 3454138
Number of extensions: 17987910
Number of successful extensions: 41874
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 40809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41842
length of database: 1,185,965,366
effective HSP length: 124
effective length of database: 757,652,254
effective search space used: 59096875812
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)