BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_915654.1| P0677H08.7 [Oryza sativa (japonica cultiva... 127 7e-28
gb|AAV59306.1| unknown protein [Oryza sativa (japonica cult... 121 5e-26
gb|AAM64375.1| unknown [Arabidopsis thaliana] 118 4e-25
ref|NP_564483.1| LCV2 [Arabidopsis thaliana] >gi|12321538|g... 118 4e-25
ref|NP_565464.1| COV1 (CONTINUOUS VASCULAR RING) [Arabidops... 110 9e-23
ref|NP_565465.1| LCV1 [Arabidopsis thaliana] >gi|22136466|g... 110 9e-23
gb|AAM10356.1| At2g20120/T2G17.8 [Arabidopsis thaliana] >gi... 107 8e-22
ref|NP_973484.1| LCV3 [Arabidopsis thaliana] 106 2e-21
ref|NP_179436.2| LCV3 [Arabidopsis thaliana] 106 2e-21
gb|AAD15492.1| hypothetical protein [Arabidopsis thaliana] 106 2e-21
gb|AAU43966.1| unknown protein [Oryza sativa (japonica cult... 105 3e-21
dbj|BAD28633.1| unknown protein [Oryza sativa (japonica cul... 103 1e-20
gb|ABA98496.1| hypothetical protein LOC_Os12g29750 [Oryza s... 76 3e-12
ref|ZP_01168841.1| alginate O-acetyltransferase [Bacillus s... 35 6.5
>ref|NP_915654.1| P0677H08.7 [Oryza sativa (japonica cultivar-group)]
dbj|BAB89792.1| membrane protein COV-like [Oryza sativa (japonica cultivar-group)]
Length = 259
Score = 127 bits (319), Expect = 7e-28
Identities = 62/69 (89%), Positives = 64/69 (92%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNS RPNLS
Sbjct: 161 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLS 220
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 221 IREGIEIIV 229
Score = 61.6 bits (148), Expect = 5e-08
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRM 491
EIIVSGGMTMPQVIASLEP PRKSQNIRLNR+
Sbjct: 226 EIIVSGGMTMPQVIASLEPTPRKSQNIRLNRI 257
>gb|AAV59306.1| unknown protein [Oryza sativa (japonica cultivar-group)]
ref|XP_475304.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 260
Score = 121 bits (303), Expect = 5e-26
Identities = 58/69 (84%), Positives = 62/69 (89%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AII HPRIGEYAFGFITST++LQTDKGDEELCSVYVPTNHLYIGDIFLV S RPNLS
Sbjct: 161 AIISHPRIGEYAFGFITSTMILQTDKGDEELCSVYVPTNHLYIGDIFLVRSEEIIRPNLS 220
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 221 IREGIEIIV 229
Score = 46.2 bits (108), Expect = 0.002
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +3
Query: 396 EIIVSGGMTMPQVIASLEPMPRKSQNIRLNRM 491
EIIVSGGMTMPQVIA+ P K Q+ RLNRM
Sbjct: 226 EIIVSGGMTMPQVIAAPGQTPHKGQSTRLNRM 257
>gb|AAM64375.1| unknown [Arabidopsis thaliana]
Length = 261
Score = 118 bits (295), Expect = 4e-25
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 160 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 219
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 220 IREGIEIIV 228
>ref|NP_564483.1| LCV2 [Arabidopsis thaliana]
gb|AAG50825.1| unknown protein [Arabidopsis thaliana]
dbj|BAD44523.1| unknown protein [Arabidopsis thaliana]
dbj|BAD44455.1| unknown protein [Arabidopsis thaliana]
Length = 261
Score = 118 bits (295), Expect = 4e-25
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 160 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 219
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 220 IREGIEIIV 228
>ref|NP_565464.1| COV1 (CONTINUOUS VASCULAR RING) [Arabidopsis thaliana]
gb|AAD24385.1| expressed protein [Arabidopsis thaliana]
gb|AAO41858.1| putative membrane protein COV [Arabidopsis thaliana]
gb|AAM61543.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 110 bits (275), Expect = 9e-23
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 174 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 233
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 234 VREGIEIVV 242
>ref|NP_565465.1| LCV1 [Arabidopsis thaliana]
gb|AAM91311.1| unknown protein [Arabidopsis thaliana]
gb|AAD24400.2| expressed protein [Arabidopsis thaliana]
gb|AAL62439.1| unknown protein [Arabidopsis thaliana]
gb|AAM61503.1| unknown [Arabidopsis thaliana]
Length = 256
Score = 110 bits (275), Expect = 9e-23
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 164 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 223
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 224 VREGIEIVV 232
>gb|AAM10356.1| At2g20120/T2G17.8 [Arabidopsis thaliana]
gb|AAK95310.1| At2g20120/T2G17.8 [Arabidopsis thaliana]
Length = 268
Score = 107 bits (267), Expect = 8e-22
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTN LYIGDI LVNS RPNLS
Sbjct: 174 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNRLYIGDILLVNSNDVIRPNLS 233
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 234 VREGIEIVV 242
>ref|NP_973484.1| LCV3 [Arabidopsis thaliana]
Length = 246
Score = 106 bits (264), Expect = 2e-21
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 159 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 218
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 219 VREGIEIVI 227
>ref|NP_179436.2| LCV3 [Arabidopsis thaliana]
Length = 213
Score = 106 bits (264), Expect = 2e-21
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 125 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 184
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 185 VREGIEIVI 193
>gb|AAD15492.1| hypothetical protein [Arabidopsis thaliana]
Length = 129
Score = 106 bits (264), Expect = 2e-21
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 30 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 89
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 90 VREGIEIVI 98
>gb|AAU43966.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 273
Score = 105 bits (262), Expect = 3e-21
Identities = 52/68 (76%), Positives = 57/68 (83%)
Frame = +1
Query: 7 IIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSI 186
IIRHPRIGEYAFGFITS+V LQ+ G EEL VYVPTNHLYIGDIF+VNS RPNLS+
Sbjct: 178 IIRHPRIGEYAFGFITSSVSLQSYTGQEELYCVYVPTNHLYIGDIFMVNSKDVIRPNLSV 237
Query: 187 REGIGMVV 210
REGI +VV
Sbjct: 238 REGIEIVV 245
>dbj|BAD28633.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 291
Score = 103 bits (256), Expect = 1e-20
Identities = 50/68 (73%), Positives = 56/68 (82%)
Frame = +1
Query: 7 IIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSI 186
IIRHPRIGEYAFGFITS V+LQ +E++ VYVPTNHLYIGDIFLVNS RPNLS+
Sbjct: 196 IIRHPRIGEYAFGFITSEVLLQDYSSEEQMYCVYVPTNHLYIGDIFLVNSSDVIRPNLSV 255
Query: 187 REGIGMVV 210
REGI +VV
Sbjct: 256 REGIEIVV 263
>gb|ABA98496.1| hypothetical protein LOC_Os12g29750 [Oryza sativa (japonica
cultivar-group)]
Length = 274
Score = 75.9 bits (185), Expect = 3e-12
Identities = 41/79 (51%), Positives = 51/79 (64%), Gaps = 11/79 (13%)
Frame = +1
Query: 7 IIRHPRIGEYAFGFITSTVVLQTDK-----------GDEELCSVYVPTNHLYIGDIFLVN 153
IIRHPRIGEYA GFITST+ L+ G EL VYVPTN+LY+GDIFL++
Sbjct: 167 IIRHPRIGEYALGFITSTLTLRGVADGRRGGGSGAGGGRELACVYVPTNNLYLGDIFLMS 226
Query: 154 SXXXXRPNLSIREGIGMVV 210
P+LS+RE I +V+
Sbjct: 227 RADVIVPDLSVREAIEIVL 245
>ref|ZP_01168841.1| alginate O-acetyltransferase [Bacillus sp. NRRL B-14911]
gb|EAR68800.1| alginate O-acetyltransferase [Bacillus sp. NRRL B-14911]
Length = 481
Score = 34.7 bits (78), Expect = 6.5
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 184 IREGIGMVVWLI*CLASLYYYAMWQLSLKFLLLVFSYLVNFAL 312
+++G +W++ ASL++YA W +S L+L+ S LVNFA+
Sbjct: 26 MKQGTAAKLWIV--AASLFFYAWWNISYLPLILI-SMLVNFAI 65
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,160,813,629
Number of Sequences: 3454138
Number of extensions: 44103784
Number of successful extensions: 81001
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80979
length of database: 1,185,965,366
effective HSP length: 131
effective length of database: 733,473,288
effective search space used: 157696756920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)