BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_468637.1| putative small nuclear ribonucleoprotein p... 153 4e-36
ref|XP_479108.1| putative small nuclear ribonucleoprotein E... 149 7e-35
ref|NP_179971.1| unknown protein [Arabidopsis thaliana] >gi... 148 2e-34
ref|NP_187757.1| unknown protein [Arabidopsis thaliana] >gi... 147 2e-34
gb|ABD32677.1| TonB box, N-terminal; Like-Sm ribonucleoprot... 144 3e-33
gb|AAK55776.1| Putative small nuclear ribonucleoprotein G [... 139 7e-32
emb|CAA44975.1| snRNP-related protein [Medicago sativa] >gi... 131 2e-29
gb|AAT08690.1| small nuclear ribonucleoprotein polypeptide ... 129 1e-28
emb|CAF90891.1| unnamed protein product [Tetraodon nigrovir... 94 5e-18
ref|NP_573139.1| CG9742-PA [Drosophila melanogaster] >gi|17... 93 8e-18
gb|AAH81512.1| Zgc:103688 [Danio rerio] >gi|52219152|ref|NP... 92 1e-17
ref|XP_625205.1| PREDICTED: similar to ENSANGP00000010868 [... 92 1e-17
gb|AAX62416.1| small nuclear ribonucleoprotein G [Lysiphleb... 92 2e-17
ref|XP_728048.1| small nuclear ribonucleoprotein polypeptid... 92 2e-17
ref|XP_742213.1| small nuclear ribonucleoprotein [Plasmodiu... 92 2e-17
ref|XP_676547.1| small nuclear ribonucleoprotein [Plasmodiu... 91 2e-17
gb|EAA07689.2| ENSANGP00000010868 [Anopheles gambiae str. P... 91 4e-17
ref|NP_704332.1| small nuclear ribonucleoprotein, putative ... 90 7e-17
gb|AAI06056.1| Small nuclear ribonucleoprotein polypeptide ... 90 7e-17
ref|XP_380933.1| conserved hypothetical protein [Gibberella... 86 7e-16
gb|EAQ93863.1| conserved hypothetical protein [Chaetomium g... 86 1e-15
ref|XP_747301.1| small nuclear ribonucleoprotein SmG [Asper... 85 2e-15
ref|XP_958647.1| hypothetical protein [Neurospora crassa N1... 85 2e-15
emb|CAE60496.1| Hypothetical protein CBG04114 [Caenorhabdit... 85 2e-15
ref|XP_659099.1| hypothetical protein AN1495.2 [Aspergillus... 85 2e-15
ref|XP_639367.1| hypothetical protein DDB0204999 [Dictyoste... 83 6e-15
ref|XP_916352.1| PREDICTED: similar to small nuclear ribonu... 83 8e-15
gb|AAF36015.1| Small nuclear ribonucleoprotein protein 7 [C... 82 2e-14
ref|XP_484457.3| PREDICTED: similar to small nuclear ribonu... 81 2e-14
emb|CAI74283.1| small nuclear ribonucleoprotein, putative [... 80 5e-14
gb|AAX30638.1| SJCHGC06306 protein [Schistosoma japonicum] 77 3e-13
ref|XP_883617.1| PREDICTED: similar to small nuclear ribonu... 77 4e-13
ref|XP_621683.2| PREDICTED: similar to small nuclear ribonu... 77 4e-13
gb|AAS56789.1| YFL017W-A [Saccharomyces cerevisiae] >gi|559... 75 1e-12
emb|CAA19285.1| SPBC4B4.05 [Schizosaccharomyces pombe] >gi|... 75 1e-12
ref|XP_788177.1| PREDICTED: similar to small nuclear ribonu... 75 1e-12
gb|EAR82425.1| Sm protein [Tetrahymena thermophila SB210] 74 3e-12
ref|XP_899672.1| PREDICTED: similar to small nuclear ribonu... 72 1e-11
ref|XP_911315.1| PREDICTED: similar to small nuclear ribonu... 72 1e-11
gb|EAL18583.1| hypothetical protein CNBJ0090 [Cryptococcus ... 72 2e-11
ref|XP_453405.1| unnamed protein product [Kluyveromyces lac... 70 5e-11
ref|XP_650141.1| small nuclear ribonucleoprotein G [Entamoe... 70 5e-11
ref|XP_744515.1| hypothetical protein PC001427.02.0 [Plasmo... 69 9e-11
ref|XP_757672.1| hypothetical protein UM01525.1 [Ustilago m... 69 2e-10
ref|XP_765266.1| small nuclear ribonucleoprotein G [Theiler... 68 2e-10
ref|XP_651637.1| small nuclear ribonucleoprotein G [Entamoe... 67 4e-10
dbj|BAE55684.1| unnamed protein product [Aspergillus oryzae] 67 4e-10
gb|AAS53882.1| AFR511Cp [Ashbya gossypii ATCC 10895] >gi|45... 66 1e-09
ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella... 64 4e-09
ref|XP_758502.1| hypothetical protein UM02355.1 [Ustilago m... 64 5e-09
ref|XP_798585.1| PREDICTED: similar to LSM7 homolog, U6 sma... 62 1e-08
gb|EAQ89994.1| hypothetical protein CHGG_06613 [Chaetomium ... 62 2e-08
ref|XP_232769.1| PREDICTED: similar to small nuclear ribonu... 61 3e-08
ref|XP_658371.1| hypothetical protein AN0767.2 [Aspergillus... 60 4e-08
gb|AAW45898.1| hypothetical protein CNJ03360 [Cryptococcus ... 60 6e-08
emb|CAA86879.1| orf2 [Saccharomyces cerevisiae] >gi|1302101... 60 7e-08
ref|XP_908742.1| PREDICTED: similar to small nuclear ribonu... 58 2e-07
ref|XP_964114.1| hypothetical protein [Neurospora crassa N1... 57 4e-07
gb|AAH74231.1| MGC83430 protein [Xenopus laevis] 57 5e-07
gb|EAA12576.2| ENSANGP00000010565 [Anopheles gambiae str. P... 57 5e-07
emb|CAG08031.1| unnamed protein product [Tetraodon nigrovir... 57 5e-07
ref|XP_854995.1| PREDICTED: similar to U6 snRNA-associated ... 57 5e-07
ref|XP_707705.1| PREDICTED: similar to U6 snRNA-associated ... 57 5e-07
ref|XP_684914.1| PREDICTED: similar to U6 snRNA-associated ... 57 5e-07
ref|NP_057283.1| U6 snRNA-associated Sm-like protein LSm7 [... 57 6e-07
ref|XP_343158.1| PREDICTED: similar to LSM7 homolog, U6 sma... 57 6e-07
ref|XP_512258.1| PREDICTED: similar to U6 snRNA-associated ... 57 6e-07
ref|NP_178480.1| unknown protein [Arabidopsis thaliana] >gi... 56 8e-07
ref|NP_701457.1| u6 snRNA-associated Sm-like protein, putat... 56 1e-06
gb|AAH81444.1| LSM7 homolog, U6 small nuclear RNA associate... 56 1e-06
gb|EAQ71302.1| hypothetical protein MGG_ch7g709 [Magnaporth... 56 1e-06
ref|XP_480353.1| putative snRNP splicing factor -related [O... 55 1e-06
gb|ABA27350.1| mRNA splicing factor snRNPG [Bigelowiella na... 55 1e-06
gb|AAD05369.1| small nucleolar ribonucleoprotein E homolog ... 55 2e-06
emb|CAG31541.1| hypothetical protein [Gallus gallus] >gi|57... 54 3e-06
gb|ABD36138.1| U6 snRNA-associated Sm-like protein [Bombyx ... 54 3e-06
gb|AAW46688.1| U6 snRNA binding protein, putative [Cryptoco... 54 3e-06
ref|XP_636181.1| hypothetical protein DDB0188448 [Dictyoste... 54 4e-06
emb|CAA93428.1| Hypothetical protein ZK593.7 [Caenorhabditi... 54 5e-06
ref|XP_829487.1| small nuclear ribonucleoprotein Sm-G [Tryp... 54 5e-06
gb|EAL33603.1| GA12164-PA [Drosophila pseudoobscura] 54 5e-06
emb|CAF32144.1| u6 snrna-associated sm-like protein, putati... 54 5e-06
emb|CAA20851.1| SPCC285.12 [Schizosaccharomyces pombe] >gi|... 53 7e-06
ref|NP_609807.1| CG13277-PA [Drosophila melanogaster] >gi|2... 53 7e-06
dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplas... 53 7e-06
emb|CAE61961.1| Hypothetical protein CBG05961 [Caenorhabdit... 53 7e-06
gb|EAM93879.1| Small nuclear ribonucleoprotein (Sm protein)... 53 7e-06
ref|XP_454984.1| unnamed protein product [Kluyveromyces lac... 53 9e-06
emb|CAC12056.1| hypothetical protein [Thermoplasma acidophi... 53 9e-06
gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus ... 53 9e-06
emb|CAG60907.1| unnamed protein product [Candida glabrata C... 52 1e-05
ref|XP_673172.1| u6 snRNA-associated Sm-like protein [Plasm... 52 2e-05
emb|CAG90229.1| unnamed protein product [Debaryomyces hanse... 52 2e-05
ref|NP_850580.1| unknown protein [Arabidopsis thaliana] >gi... 52 2e-05
gb|EAM93838.1| Small nuclear ribonucleoprotein (Sm protein)... 52 2e-05
gb|AAS53424.1| AFR053Cp [Ashbya gossypii ATCC 10895] >gi|45... 51 3e-05
dbj|BAB65770.1| 79aa long hypothetical small nuclear ribonu... 51 3e-05
gb|AAP80816.1| U6 snRNA-associated Sm-like protein LSm7 [Gr... 50 4e-05
ref|XP_962388.1| hypothetical protein [Neurospora crassa N1... 50 4e-05
ref|XP_762856.1| U6 snRNA-associated protein [Theileria par... 49 1e-04
gb|AAY54654.1| IP04948p [Drosophila melanogaster] 49 1e-04
ref|NP_611559.1| CG4279-PA [Drosophila melanogaster] >gi|66... 49 1e-04
emb|CAB59808.1| SPBC11G11.06c [Schizosaccharomyces pombe] >... 49 1e-04
emb|CAI75598.1| small nuclear ribonucleoprotein (E), putati... 49 1e-04
ref|NP_564072.1| unknown protein [Arabidopsis thaliana] >gi... 49 2e-04
gb|AAM61736.1| unknown [Arabidopsis thaliana] 49 2e-04
ref|XP_748912.1| small nuclear ribonucleoprotein SmE [Asper... 49 2e-04
emb|CAE61561.1| Hypothetical protein CBG05470 [Caenorhabdit... 49 2e-04
ref|XP_818740.1| small nuclear ribonucleoprotein Sm-G [Tryp... 49 2e-04
gb|EAL26508.1| GA18077-PA [Drosophila pseudoobscura] 48 2e-04
gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus ... 48 2e-04
gb|AAL00875.1| Lsm sm-like protein protein 8 [Caenorhabditi... 48 3e-04
gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus a... 47 4e-04
gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homo... 47 5e-04
ref|NP_598700.1| U6 snRNA-associated Sm-like protein LSm8 [... 47 5e-04
ref|XP_694374.1| PREDICTED: similar to U6 snRNA-associated ... 47 5e-04
gb|EAA00900.2| ENSANGP00000012242 [Anopheles gambiae str. P... 47 5e-04
ref|XP_416009.1| PREDICTED: similar to U6 snRNA-associated ... 47 5e-04
emb|CAI75948.1| u6 snrna-associated sm-like protein, putati... 47 6e-04
gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) ... 47 6e-04
pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Pro... 47 6e-04
emb|CAG87964.1| unnamed protein product [Debaryomyces hanse... 46 8e-04
ref|XP_917892.1| PREDICTED: similar to small nuclear ribonu... 46 8e-04
gb|AAH68881.1| MGC82379 protein [Xenopus laevis] 46 0.001
ref|XP_454633.1| unnamed protein product [Kluyveromyces lac... 46 0.001
ref|XP_641509.1| hypothetical protein DDB0206318 [Dictyoste... 46 0.001
ref|XP_755512.1| small nuclear ribonucleoprotein LSM1 [Aspe... 45 0.001
ref|XP_759115.1| hypothetical protein UM02968.1 [Ustilago m... 45 0.001
emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, puta... 45 0.001
ref|XP_624639.1| PREDICTED: similar to CG4279-PA [Apis mell... 45 0.001
gb|AAZ72465.1| small nuclear riboprotein-like protein [Meth... 45 0.002
ref|XP_797604.1| PREDICTED: similar to LSM5 homolog, U6 sma... 45 0.002
ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Thei... 45 0.002
gb|AAV59381.1| unknown protein [Oryza sativa (japonica cult... 45 0.002
emb|CAJ08627.1| small nuclear ribonucleoprotein, putative [... 45 0.002
gb|AAH45532.1| LSM8 protein [Homo sapiens] 45 0.002
gb|AAW41037.1| u6 snRNA-associated sm-like protein lsm8, pu... 45 0.002
ref|NP_634407.1| Small nuclear riboprotein-like protein [Me... 45 0.002
emb|CAC12364.1| small nuclear ribonucleoprotein related pro... 45 0.002
ref|ZP_01153713.1| Like-Sm ribonucleoprotein, core [Methano... 45 0.002
ref|NP_595520.1| small nuclear ribonucleoprotein [Schizosac... 45 0.002
ref|XP_472650.1| OSJNBa0027P08.15 [Oryza sativa (japonica c... 45 0.002
dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplas... 44 0.003
sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein >gi|135... 44 0.003
ref|NP_704263.1| u6 snRNA-associated sm-like protein, putat... 44 0.004
ref|XP_628515.1| hypothetical protein cgd7_3520 [Cryptospor... 44 0.004
dbj|BAB02972.1| unnamed protein product [Arabidopsis thaliana] 44 0.004
ref|XP_502273.1| hypothetical protein [Yarrowia lipolytica]... 44 0.004
ref|XP_382922.1| hypothetical protein FG02746.1 [Gibberella... 44 0.004
ref|XP_624537.1| PREDICTED: similar to CG2021-PA [Apis mell... 44 0.004
gb|AAW46642.1| RNA cap binding protein, putative [Cryptococ... 44 0.004
emb|CAI74625.1| small nuclear ribonucleoprotein associated ... 44 0.004
emb|CAG85236.1| unnamed protein product [Debaryomyces hanse... 44 0.005
gb|AAH78466.1| MGC85219 protein [Xenopus laevis] 43 0.007
gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A] ... 43 0.007
ref|XP_519030.1| PREDICTED: similar to LSM5 homolog, U6 sma... 43 0.007
ref|NP_506870.1| LSM Sm-like protein family member (lsm-5) ... 43 0.007
ref|ZP_01153344.1| Like-Sm ribonucleoprotein, core [Methano... 43 0.007
ref|XP_418849.1| PREDICTED: similar to LSM5 homolog, U6 sma... 43 0.007
emb|CAA20133.1| SPCC1840.10 [Schizosaccharomyces pombe] >gi... 43 0.009
emb|CAC27090.1| putative small nuclear ribonucleoprotein E ... 43 0.009
emb|CAF98730.1| unnamed protein product [Tetraodon nigrovir... 43 0.009
emb|CAE71635.1| Hypothetical protein CBG18602 [Caenorhabdit... 43 0.009
ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptospo... 43 0.009
ref|XP_764928.1| small nuclear ribonucleoprotein B [Theiler... 42 0.012
ref|NP_647660.1| CG2021-PA [Drosophila melanogaster] >gi|68... 42 0.012
gb|EAA10979.2| ENSANGP00000011511 [Anopheles gambiae str. P... 42 0.012
emb|CAF89998.1| unnamed protein product [Tetraodon nigrovir... 42 0.012
ref|XP_900171.1| PREDICTED: similar to U6 snRNA-associated ... 42 0.012
gb|AAS56633.1| YJL124C [Saccharomyces cerevisiae] >gi|10083... 42 0.012
ref|XP_645139.1| hypothetical protein DDB0206555 [Dictyoste... 42 0.016
emb|CAH73282.1| small nuclear ribonucleoprotein polypeptide... 42 0.016
ref|YP_504465.1| Like-Sm ribonucleoprotein, core [Methanosp... 42 0.016
emb|CAA93263.1| Hypothetical protein F40F8.9 [Caenorhabditi... 42 0.016
gb|AAZ72371.1| putative snRNP Sm-like protein [Methanosarci... 42 0.016
emb|CAE59566.1| Hypothetical protein CBG02963 [Caenorhabdit... 42 0.016
gb|AAI10195.1| LSM1 protein [Bos taurus] 42 0.016
ref|XP_692400.1| PREDICTED: similar to LSM5 homolog, U6 sma... 42 0.016
ref|XP_532806.2| PREDICTED: similar to U6 snRNA-associated ... 42 0.016
ref|NP_001011191.1| LSM1 homolog, U6 small nuclear RNA asso... 42 0.016
gb|AAX08788.1| Lsm1 protein [Bos taurus] >gi|59857841|gb|AA... 42 0.016
ref|NP_055277.1| Lsm1 protein [Homo sapiens] >gi|12804683|g... 42 0.016
gb|AAH21460.1| Lsm1 protein [Mus musculus] >gi|26334347|dbj... 42 0.016
gb|AAI06458.1| Unknown (protein for MGC:131170) [Xenopus la... 42 0.016
ref|NP_001003551.1| hypothetical protein LOC445157 [Danio r... 42 0.021
ref|NP_648022.1| CG6610-PA [Drosophila melanogaster] >gi|21... 42 0.021
gb|EAA00327.1| ENSANGP00000020162 [Anopheles gambiae str. P... 42 0.021
gb|AAS50482.1| AAR116Wp [Ashbya gossypii ATCC 10895] >gi|45... 42 0.021
emb|CAF28746.1| hypothetical protein [uncultured crenarchae... 42 0.021
emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabdit... 42 0.021
ref|XP_905537.1| PREDICTED: LSM1 homolog, U6 small nuclear ... 42 0.021
gb|EAL29577.1| GA19721-PA [Drosophila pseudoobscura] 42 0.021
ref|XP_391051.1| hypothetical protein FG10875.1 [Gibberella... 42 0.021
ref|XP_234416.3| PREDICTED: similar to YLP motif containing... 41 0.027
ref|NP_013543.1| Lsm (Like Sm) protein; part of heterohepta... 41 0.027
dbj|BAA79491.1| 77aa long hypothetical small nuclear ribonu... 41 0.027
gb|EAL29909.1| GA15189-PA [Drosophila pseudoobscura] 41 0.027
emb|CAG60479.1| unnamed protein product [Candida glabrata C... 41 0.036
ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba... 41 0.036
gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895] >gi|45... 41 0.036
emb|CAB54975.1| SPAC2F3.17c [Schizosaccharomyces pombe] >gi... 41 0.036
ref|XP_854453.1| PREDICTED: similar to LSM5 homolog, U6 sma... 41 0.036
gb|AAW25134.1| SJCHGC05770 protein [Schistosoma japonicum] 41 0.036
gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210] 41 0.036
ref|XP_855162.1| PREDICTED: similar to U6 snRNA-associated ... 40 0.047
ref|XP_657435.1| U6 snRNA-associated Sm-like protein [Entam... 40 0.047
ref|XP_520443.1| PREDICTED: similar to small nuclear ribonu... 40 0.047
ref|XP_799246.1| PREDICTED: similar to U6 snRNA-associated ... 40 0.047
emb|CAF91744.1| unnamed protein product [Tetraodon nigrovir... 40 0.047
emb|CAD52624.1| small nuclear ribonucleoprotein, putative [... 40 0.061
ref|NP_001031238.1| unknown protein [Arabidopsis thaliana] ... 40 0.061
ref|XP_576487.1| PREDICTED: similar to small nuclear ribonu... 40 0.061
ref|NP_502579.1| LSM Sm-like protein family member (lsm-3) ... 40 0.061
ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeogl... 40 0.061
ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus mus... 40 0.061
emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musc... 40 0.061
gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A] ... 40 0.061
gb|AAB59365.1| small nuclear ribonucleic protein 40 0.061
emb|CAG61986.1| unnamed protein product [Candida glabrata C... 40 0.061
ref|XP_420431.1| PREDICTED: similar to U6 snRNA-associated ... 40 0.061
ref|XP_519332.1| PREDICTED: similar to U6 snRNA-associated ... 40 0.061
gb|AAO50828.2| similar to Arabidopsis thaliana (Mouse-ear c... 40 0.079
ref|XP_945300.1| PREDICTED: similar to small nuclear ribonu... 40 0.079
gb|AAH72549.1| Zgc:92379 [Danio rerio] >gi|68354986|ref|XP_... 40 0.079
ref|NP_191540.1| unknown protein [Arabidopsis thaliana] >gi... 40 0.079
ref|XP_621458.2| PREDICTED: similar to LSM5 homolog, U6 sma... 40 0.079
ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosa... 40 0.079
ref|YP_448199.1| putative snRNP Sm-like protein [Methanosph... 40 0.079
gb|AAC25622.1| R30783_1 [Homo sapiens] 39 0.10
gb|AAH72854.1| MGC80249 protein [Xenopus laevis] 39 0.10
gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabido... 39 0.10
ref|XP_341121.2| PREDICTED: similar to small nuclear ribonu... 39 0.10
ref|NP_009011.1| Sm protein F [Homo sapiens] >gi|51593502|g... 39 0.10
emb|CAB11551.1| Hypothetical protein Y49E10.15 [Caenorhabdi... 39 0.10
emb|CAG11060.1| unnamed protein product [Tetraodon nigrovir... 39 0.10
ref|NP_609162.1| CG18591-PA [Drosophila melanogaster] >gi|2... 39 0.10
ref|XP_801807.1| PREDICTED: similar to small nuclear ribonu... 39 0.10
ref|XP_574220.1| PREDICTED: similar to U6 snRNA-associated ... 39 0.10
ref|XP_392871.2| PREDICTED: similar to ENSANGP00000007148 [... 39 0.10
gb|EAR96393.1| Sm protein [Tetrahymena thermophila SB210] 39 0.10
gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium ... 39 0.14
emb|CAC18540.1| putative U6-snRNA-associated protein [Echin... 39 0.14
gb|AAW40622.1| conserved hypothetical protein [Cryptococcus... 39 0.14
gb|AAK73913.1| Lsm sm-like protein protein 6 [Caenorhabditi... 39 0.14
gb|AAY54785.1| IP05148p [Drosophila melanogaster] 39 0.14
gb|AAY54770.1| IP05048p [Drosophila melanogaster] 39 0.14
gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus ... 39 0.14
gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-... 39 0.14
ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella... 39 0.14
ref|XP_763438.1| U6 snRNA-associated Sm-like protein LSm8 [... 39 0.14
ref|XP_910200.1| PREDICTED: similar to U6 snRNA-associated ... 39 0.14
emb|CAI64218.1| small nuclear riboprotein-like protein [unc... 39 0.14
gb|EAL33779.1| GA15004-PA [Drosophila pseudoobscura] 39 0.14
pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum S... 39 0.14
ref|XP_766985.1| hypothetical protein GLP_122_3813_3433 [Gi... 39 0.14
gb|AAS53162.1| AFL212Cp [Ashbya gossypii ATCC 10895] >gi|45... 39 0.18
ref|XP_575234.1| PREDICTED: similar to small nuclear ribonu... 39 0.18
gb|AAH03530.1| SNRPB protein [Homo sapiens] 39 0.18
ref|XP_716425.1| putative mRNA decapping complex component ... 39 0.18
gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapi... 39 0.18
ref|YP_502671.1| Like-Sm ribonucleoprotein, core [Methanosp... 39 0.18
gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neof... 39 0.18
gb|AAH77697.1| MGC89991 protein [Xenopus tropicalis] >gi|52... 39 0.18
ref|ZP_00561685.1| Small nuclear ribonucleoprotein (Sm prot... 39 0.18
ref|XP_746259.1| Plasmodium chabaudi chabaudi small nuclear... 39 0.18
ref|XP_677480.1| small nuclear ribonucleoprotein [Plasmodiu... 39 0.18
emb|CAF96946.1| unnamed protein product [Tetraodon nigrovir... 39 0.18
emb|CAE66477.1| Hypothetical protein CBG11756 [Caenorhabdit... 39 0.18
ref|XP_784644.1| PREDICTED: similar to small nuclear ribonu... 39 0.18
pdb|1D3B|L Chain L, Crystal Structure Of The D3b Subcomplex... 39 0.18
gb|AAU89981.1| small nuclear ribonucleoprotein polypeptide ... 39 0.18
ref|NP_003082.1| small nuclear ribonucleoprotein polypeptid... 39 0.18
dbj|BAE27074.1| unnamed protein product [Mus musculus] >gi|... 39 0.18
ref|XP_525398.1| PREDICTED: similar to Small nuclear ribonu... 39 0.18
gb|AAF40115.1| small nuclear ribonucleoprotein B' [Macropus... 39 0.18
gb|AAX46330.1| small nuclear ribonucleoprotein polypeptide ... 39 0.18
ref|NP_937859.1| small nuclear ribonucleoprotein polypeptid... 39 0.18
gb|AAD54481.1| small nuclear ribonucleoprotein B' [Erinaceu... 39 0.18
ref|XP_525246.1| PREDICTED: similar to Small nuclear ribonu... 39 0.18
gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sap... 39 0.18
gb|AAA60151.1| snRNP polypeptide B 39 0.18
gb|AAI12635.1| Unknown (protein for MGC:137254) [Bos taurus] 39 0.18
ref|XP_451102.1| unnamed protein product [Kluyveromyces lac... 38 0.23
emb|CAD26611.1| SMALL NUCLEAR RIBONUCLEOPROTEIN G [Encephal... 38 0.23
gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895] >gi|45... 38 0.23
sp|O26745|RUXX_METTH Putative snRNP Sm-like protein >gi|262... 38 0.23
gb|AAH49062.1| Similar to small nuclear ribonucleoprotein E... 38 0.23
ref|NP_147628.1| homolog of small nuclear ribonucleoprotein... 38 0.23
ref|ZP_00563110.1| Small nuclear ribonucleoprotein (Sm prot... 38 0.23
pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Arc... 38 0.23
pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial... 38 0.23
pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649,... 38 0.23
pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Li... 38 0.23
ref|NP_989930.1| small nuclear ribonucleoprotein polypeptid... 38 0.23
ref|NP_001029144.1| small nuclear ribonucleoprotein B' isof... 38 0.23
gb|AAI08498.1| Unknown (protein for MGC:130840) [Xenopus la... 38 0.23
ref|NP_991230.1| snRNP-associated protein [Danio rerio] >gi... 38 0.30
emb|CAF90166.1| unnamed protein product [Tetraodon nigrovir... 38 0.30
gb|AAX30121.1| putative U6-snRNA-associated protein [Schist... 38 0.30
ref|NP_181909.1| unknown protein [Arabidopsis thaliana] >gi... 38 0.30
emb|CAD26651.1| U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN... 38 0.30
ref|XP_628678.1| putative u6 snRNA-associated sm-like prote... 38 0.30
gb|EAA07131.2| ENSANGP00000022836 [Anopheles gambiae str. P... 38 0.30
gb|AAF03088.1| SmE protein [Leptomonas collosoma] 38 0.30
emb|CAE74418.1| Hypothetical protein CBG22150 [Caenorhabdit... 38 0.30
gb|ABA27365.1| mRNA splicing factor [Bigelowiella natans] 38 0.30
gb|AAH76700.1| SNRPN upstream reading frame [Xenopus tropic... 38 0.30
ref|XP_344537.2| PREDICTED: similar to U6 snRNA-associated ... 38 0.30
gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus muscu... 38 0.30
gb|AAF23841.1| F1E22.8 [Arabidopsis thaliana] 38 0.30
gb|AAV31348.1| putative snRNA associated protein [Oryza sat... 37 0.39
gb|AAU82297.1| small nuclear riboprotein-like protein [uncu... 37 0.39
gb|AAH72956.1| MGC82471 protein [Xenopus laevis] 37 0.39
ref|XP_451766.1| unnamed protein product [Kluyveromyces lac... 37 0.39
emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEI... 37 0.39
gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear c... 37 0.39
ref|NP_199698.1| SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)... 37 0.39
ref|XP_667702.1| u6 snRNA-associated sm-like protein [Crypt... 37 0.39
gb|EAA00883.2| ENSANGP00000011793 [Anopheles gambiae str. P... 37 0.39
ref|NP_055278.1| Lsm3 protein [Homo sapiens] >gi|13385806|r... 37 0.39
ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated ... 37 0.39
ref|XP_849902.1| PREDICTED: similar to LSM3 homolog, U6 sma... 37 0.39
ref|XP_866219.1| PREDICTED: similar to U6 snRNA-associated ... 37 0.39
gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide ... 37 0.39
dbj|BAD96353.1| small nuclear ribonucleoprotein polypeptide... 37 0.39
ref|NP_073716.1| small nuclear ribonucleoprotein polypeptid... 37 0.39
ref|XP_536165.1| PREDICTED: similar to small nuclear ribonu... 37 0.39
gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis] 37 0.39
gb|AAA36578.1| small nuclear ribonucleoprotein particle (SmB) 37 0.51
ref|XP_454410.1| unnamed protein product [Kluyveromyces lac... 37 0.51
ref|NP_732931.1| CG31184-PA [Drosophila melanogaster] >gi|2... 37 0.51
ref|XP_465923.1| putative Sm protein F [Oryza sativa (japon... 37 0.51
ref|XP_717467.1| putative RNA processing complex subunit Ls... 37 0.51
gb|AAW47104.1| u6 snRNA-associated sm-like protein lsm6, pu... 37 0.51
gb|AAN71307.1| RE11655p [Drosophila melanogaster] 37 0.51
gb|AAS56355.1| YOR159C [Saccharomyces cerevisiae] >gi|14203... 37 0.51
ref|XP_534071.1| PREDICTED: similar to LSM3 homolog, U6 sma... 37 0.51
emb|CAD26118.1| Sm-LIKE PROTEIN [Encephalitozoon cuniculi G... 37 0.51
gb|AAA36579.1| small nuclear ribonucleoprotein particle (SmB') 37 0.51
gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura] 37 0.51
ref|XP_500142.1| hypothetical protein [Yarrowia lipolytica]... 37 0.67
emb|CAB81026.1| small nuclear ribonucleoprotein homolog [Ar... 37 0.67
emb|CAG87972.1| unnamed protein product [Debaryomyces hanse... 37 0.67
gb|AAM29543.1| RE61341p [Drosophila melanogaster] 37 0.67
ref|NP_567844.1| unknown protein [Arabidopsis thaliana] >gi... 37 0.67
gb|EAA11294.2| ENSANGP00000021121 [Anopheles gambiae str. P... 37 0.67
gb|AAS56109.1| YER146W [Saccharomyces cerevisiae] >gi|63209... 37 0.67
emb|CAE47892.1| u6 snrna-associated sm-like protein, putati... 37 0.67
emb|CAF94178.1| unnamed protein product [Tetraodon nigrovir... 37 0.67
ref|XP_786272.1| PREDICTED: similar to LSM3 homolog, U6 sma... 37 0.67
ref|XP_893873.1| PREDICTED: similar to small nuclear ribonu... 37 0.67
ref|XP_655404.1| U6 snRNA-associated Sm-like protein [Entam... 36 0.88
ref|NP_179464.1| unknown protein [Arabidopsis thaliana] >gi... 36 0.88
gb|AAX80180.1| small nuclear ribonucleoprotein SmD1, putati... 36 0.88
ref|XP_517469.1| PREDICTED: similar to U6 snRNA-associated ... 36 0.88
ref|XP_851528.1| PREDICTED: similar to LSM3 homolog, U6 sma... 36 0.88
ref|XP_344138.1| PREDICTED: similar to U6 snRNA-associated ... 36 0.88
dbj|BAD43836.1| unknown protein [Arabidopsis thaliana] 36 0.88
ref|NP_001032011.1| unknown protein [Arabidopsis thaliana] ... 36 0.88
gb|AAS53111.1| AER432Cp [Ashbya gossypii ATCC 10895] >gi|45... 36 0.88
gb|AAX30632.1| SJCHGC06135 protein [Schistosoma japonicum] 36 1.1
ref|XP_455499.1| unnamed protein product [Kluyveromyces lac... 36 1.1
emb|CAG89843.1| unnamed protein product [Debaryomyces hanse... 36 1.1
emb|CAG87454.1| unnamed protein product [Debaryomyces hanse... 36 1.1
ref|XP_664339.1| hypothetical protein AN6735.2 [Aspergillus... 36 1.1
ref|XP_715054.1| putative RNA processing complex subunit Ls... 36 1.1
gb|AAS56474.1| YCR020C-A [Saccharomyces cerevisiae] >gi|190... 36 1.1
ref|XP_500866.1| hypothetical protein [Yarrowia lipolytica]... 36 1.1
ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyoste... 36 1.1
ref|XP_134104.1| PREDICTED: similar to U6 snRNA-associated ... 36 1.1
gb|EAQ90789.1| conserved hypothetical protein [Chaetomium g... 36 1.1
ref|XP_856146.1| PREDICTED: similar to small nuclear ribonu... 36 1.1
gb|EAS04845.1| Sm protein [Tetrahymena thermophila SB210] 36 1.1
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana] 36 1.1
gb|AAA42059.1| snRNP-associated polypeptide N 36 1.1
ref|XP_788645.1| PREDICTED: similar to Small nuclear ribonu... 36 1.1
ref|XP_786252.1| PREDICTED: similar to Small nuclear ribonu... 36 1.1
emb|CAJ04433.1| Lsm7p protein, putative [Leishmania major] 35 1.5
ref|XP_463967.1| putative small nuclear ribonucleoprotein p... 35 1.5
ref|XP_710394.1| putative spliceosomal snRNA Sm core bindin... 35 1.5
ref|XP_757039.1| hypothetical protein UM00892.1 [Ustilago m... 35 1.5
gb|AAG19795.1| snRNP homolog; Snp [Halobacterium sp. NRC-1]... 35 1.5
ref|XP_814552.1| small nuclear ribonucleoprotein Sm-F [Tryp... 35 1.5
gb|AAR10110.1| similar to Drosophila melanogaster SmB [Dros... 35 1.5
ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoe... 35 1.5
ref|NP_476921.1| Small ribonucleoprotein particle protein B... 35 1.5
gb|EAL34232.1| GA18820-PA [Drosophila pseudoobscura] 35 1.5
gb|AAX80604.1| U6 snRNA-associated Sm-like protein LSm7p [T... 35 2.0
emb|CAA20721.1| SPBC4F6.01 [Schizosaccharomyces pombe] >gi|... 35 2.0
ref|XP_643590.1| hypothetical protein DDB0202447 [Dictyoste... 35 2.0
ref|YP_330883.1| snRNP homolog [Natronomonas pharaonis DSM ... 35 2.0
gb|AAX12417.1| ifapsoriasin [Homo sapiens] >gi|62122917|ref... 35 2.0
gb|EAQ92893.1| hypothetical protein CHGG_01128 [Chaetomium ... 35 2.0
ref|XP_381258.1| hypothetical protein FG01082.1 [Gibberella... 35 2.0
ref|XP_380642.1| hypothetical protein FG00466.1 [Gibberella... 35 2.0
emb|CAG90308.1| unnamed protein product [Debaryomyces hanse... 35 2.6
emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, p... 35 2.6
ref|XP_749081.1| small nuclear ribonucleoprotein LSM5 [Aspe... 35 2.6
gb|EAA11463.2| ENSANGP00000007148 [Anopheles gambiae str. P... 35 2.6
ref|XP_546848.2| PREDICTED: similar to Small nuclear ribonu... 35 2.6
ref|XP_662080.1| hypothetical protein AN4476.2 [Aspergillus... 34 3.3
ref|NP_113302.1| small nucleolar ribonucleoprotein G [Guill... 34 3.3
gb|AAN37024.1| small nuclear ribonuclear protein, putative ... 34 3.3
ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptospo... 34 3.3
ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. ... 34 3.3
ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [... 34 3.3
ref|YP_135491.1| snRNP-like protein [Haloarcula marismortui... 34 3.3
gb|AAZ09947.1| small nuclear ribonucleoprotein protein, put... 34 3.3
gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans] 34 3.3
ref|XP_766513.1| U6 small nuclear ribonucleoprotein [Theile... 34 3.3
dbj|BAE59300.1| unnamed protein product [Aspergillus oryzae] 34 3.3
ref|XP_451558.1| unnamed protein product [Kluyveromyces lac... 34 3.3
ref|XP_756337.1| hypothetical protein UM00190.1 [Ustilago m... 34 4.4
gb|AAO27431.1| brain-specific angiogenesis inhibitor 3 [Mus... 34 4.4
gb|AAR10017.1| similar to Drosophila melanogaster CG9344 [D... 34 4.4
ref|NP_783573.3| brain-specific angiogenesis inhibitor 3 [M... 34 4.4
sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associat... 34 4.4
ref|XP_867064.1| PREDICTED: similar to Brain-specific angio... 34 4.4
ref|XP_867052.1| PREDICTED: similar to Brain-specific angio... 34 4.4
emb|CAB07132.1| Hypothetical protein W08E3.1 [Caenorhabditi... 34 4.4
ref|XP_419892.1| PREDICTED: similar to brain-specific angio... 34 4.4
gb|AAH79670.1| Bai3 protein [Mus musculus] 34 4.4
dbj|BAC97972.1| mKIAA0550 protein [Mus musculus] 34 4.4
emb|CAI75627.1| U6 snRNA-associated Sm-like potein, putativ... 33 5.7
ref|XP_668388.1| hypothetical protein Chro.10304 [Cryptospo... 33 5.7
ref|XP_827316.1| small nuclear ribonucleoprotein Sm-F [Tryp... 33 5.7
ref|XP_750522.1| U6 snRNA-associated Sm-like protein LSm6 [... 33 5.7
ref|NP_001695.1| brain-specific angiogenesis inhibitor 3 [H... 33 5.7
gb|ABA27150.1| mRNA splicing protein [Bigelowiella natans] 33 5.7
ref|XP_518572.1| PREDICTED: similar to brain-specific angio... 33 5.7
pir||T00326 hypothetical protein KIAA0550 - human 33 5.7
dbj|BAA25476.2| KIAA0550 protein [Homo sapiens] 33 5.7
gb|AAS56776.1| YER029C [Saccharomyces cerevisiae] >gi|63208... 33 5.7
ref|XP_965639.1| hypothetical protein [Neurospora crassa N1... 33 7.4
emb|CAJ06176.1| small nuclear ribonucleoprotein polypeptide... 33 7.4
emb|CAI21673.1| BAI3 [Homo sapiens] >gi|55664406|emb|CAH715... 33 7.4
ref|NP_849414.1| SMB [Arabidopsis thaliana] >gi|15237095|re... 33 7.4
emb|CAG59510.1| unnamed protein product [Candida glabrata C... 33 7.4
ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago m... 33 7.4
emb|CAA93231.1| SPAC26A3.08 [Schizosaccharomyces pombe] >gi... 33 7.4
ref|XP_386995.1| conserved hypothetical protein [Gibberella... 33 7.4
emb|CAA78474.1| Hypothetical protein R107.8 [Caenorhabditis... 33 7.4
emb|CAE73012.1| Hypothetical protein CBG20368 [Caenorhabdit... 33 7.4
ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi cha... 33 7.4
ref|XP_758826.1| hypothetical protein UM02679.1 [Ustilago m... 33 7.4
gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum] 33 7.4
gb|AAY80044.1| conserved Archaeal protein [Sulfolobus acido... 33 9.7
emb|CAG62664.1| unnamed protein product [Candida glabrata C... 33 9.7
emb|CAI73106.1| U6 snRNA-associated Sm-lke protein, putativ... 33 9.7
gb|AAS53553.1| AFR182Cp [Ashbya gossypii ATCC 10895] >gi|45... 33 9.7
ref|NP_597593.1| similarity to SMALL NUCLEAR RIBONUCLEOPROT... 33 9.7
ref|XP_345547.1| PREDICTED: similar to small nuclear ribonu... 33 9.7
ref|XP_764675.1| hypothetical protein TP02_0106 [Theileria ... 33 9.7
ref|XP_900141.1| PREDICTED: similar to LSM5 homolog, U6 sma... 33 9.7
gb|AAN36758.1| ribonucleoprotein, putative [Plasmodium falc... 33 9.7
ref|XP_625536.1| small nuclear ribonucleoprotein U6 [Crypto... 33 9.7
ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei stra... 33 9.7
>ref|XP_468637.1| putative small nuclear ribonucleoprotein polypeptide G [Oryza
sativa (japonica cultivar-group)]
gb|AAR06315.1| putative small nuclear ribonucleoprotein polypeptide G [Oryza
sativa (japonica cultivar-group)]
Length = 80
Score = 153 bits (387), Expect = 4e-36
Identities = 74/80 (92%), Positives = 79/80 (98%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANRV++GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARSQ 242
V+RGNSVVMIEALEPV +SQ
Sbjct: 61 VVRGNSVVMIEALEPVPKSQ 80
>ref|XP_479108.1| putative small nuclear ribonucleoprotein E [Oryza sativa (japonica
cultivar-group)]
dbj|BAC84637.1| putative small nuclear ribonucleoprotein E [Oryza sativa (japonica
cultivar-group)]
Length = 80
Score = 149 bits (376), Expect = 7e-35
Identities = 74/80 (92%), Positives = 77/80 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANRVVIGTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARSQ 242
VIRGNSVVMIEALEPV + Q
Sbjct: 61 VIRGNSVVMIEALEPVPKPQ 80
>ref|NP_179971.1| unknown protein [Arabidopsis thaliana]
gb|AAC63663.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gb|AAP21306.1| At2g23930 [Arabidopsis thaliana]
gb|AAM65796.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gb|AAN72046.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
pir||E84630 probable small nuclear ribonucleoprotein E [imported] - Arabidopsis
thaliana
sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 80
Score = 148 bits (373), Expect = 2e-34
Identities = 72/79 (91%), Positives = 76/79 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>ref|NP_187757.1| unknown protein [Arabidopsis thaliana]
gb|AAL32896.1| putative small nuclear ribonucleoprotein polypeptide G [Arabidopsis
thaliana]
gb|AAG51452.1| putative small nuclear ribonucleoprotein polypeptide G; 65009-64161
[Arabidopsis thaliana]
gb|AAN65090.1| putative small nuclear ribonucleoprotein polypeptide G [Arabidopsis
thaliana]
Length = 79
Score = 147 bits (372), Expect = 2e-34
Identities = 71/79 (89%), Positives = 77/79 (97%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKLQIK+NANR+V+GTLRGFDQFMNLVVDNTVEVNG+DKTDIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNS+V +EALEPV RS
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>gb|ABD32677.1| TonB box, N-terminal; Like-Sm ribonucleoprotein-related, core
[Medicago truncatula]
Length = 80
Score = 144 bits (362), Expect = 3e-33
Identities = 69/79 (87%), Positives = 76/79 (96%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNSVV +EALEPV RS
Sbjct: 61 VIRGNSVVTVEALEPVNRS 79
>gb|AAK55776.1| Putative small nuclear ribonucleoprotein G [Oryza sativa]
Length = 94
Score = 139 bits (350), Expect = 7e-32
Identities = 73/94 (77%), Positives = 77/94 (81%), Gaps = 14/94 (14%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQ--------------IKMNANRVVIGTLRGFDQFMNLVVDNT 344
MSRSGQPPDLKKYMDKKLQ +K+NANRVVIGTLRGFDQFMNLVVDNT
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 343 VEVNGNDKTDIGMVVIRGNSVVMIEALEPVARSQ 242
VEVNGN+K DIGMVVIRGNSVVMIEALEPV + Q
Sbjct: 61 VEVNGNEKNDIGMVVIRGNSVVMIEALEPVPKPQ 94
>emb|CAA44975.1| snRNP-related protein [Medicago sativa]
sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 81
Score = 131 bits (330), Expect = 2e-29
Identities = 63/76 (82%), Positives = 70/76 (92%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MS SGQPP LKKYMDK+LQI + ANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGMV
Sbjct: 1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
Query: 301 VIRGNSVVMIEALEPV 254
VIRGNSVV +EALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76
>gb|AAT08690.1| small nuclear ribonucleoprotein polypeptide G [Hyacinthus
orientalis]
Length = 96
Score = 129 bits (323), Expect = 1e-28
Identities = 71/100 (71%), Positives = 79/100 (79%), Gaps = 1/100 (1%)
Frame = -3
Query: 538 RSELANPFLSRVRG*VAVTMSRSGQPPDLKK-YMDKKLQIKMNANRVVIGTLRGFDQFMN 362
R ANP L A + SGQPP LK+ + KLQIK+NANRVV+GTLRGFDQFMN
Sbjct: 1 RRPFANPLLVLP----AHHAAASGQPPALKQVHGTSKLQIKLNANRVVVGTLRGFDQFMN 56
Query: 361 LVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPVARSQ 242
LV+DNT+EVNGNDK DIGMVVIRGNSVVMIEALEPVAR+Q
Sbjct: 57 LVIDNTMEVNGNDKNDIGMVVIRGNSVVMIEALEPVARTQ 96
>emb|CAF90891.1| unnamed protein product [Tetraodon nigroviridis]
Length = 76
Score = 93.6 bits (231), Expect = 5e-18
Identities = 46/71 (64%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN-GNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G LRGFD FMNLVVD T+E+ G ++ IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDETLEMGPGGQQSSIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S++M+EALE V
Sbjct: 66 SIIMLEALERV 76
>ref|NP_573139.1| CG9742-PA [Drosophila melanogaster]
gb|AAL48169.1| RH35475p [Drosophila melanogaster]
gb|AAF48634.1| CG9742-PA [Drosophila melanogaster]
sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 76
Score = 92.8 bits (229), Expect = 8e-18
Identities = 44/71 (61%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGN 287
PP++KKYMDK++ +K+N R V G LRGFD FMN+V+D+TV E N K +IGMVVIRGN
Sbjct: 6 PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S+VM+EAL+ V
Sbjct: 66 SIVMVEALDRV 76
>gb|AAH81512.1| Zgc:103688 [Danio rerio]
ref|NP_001004660.1| hypothetical protein LOC447922 [Danio rerio]
Length = 76
Score = 92.4 bits (228), Expect = 1e-17
Identities = 46/71 (64%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G LRGFD FMNLVVD+T+E+ G IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S++M+EALE V
Sbjct: 66 SIIMLEALERV 76
>ref|XP_625205.1| PREDICTED: similar to ENSANGP00000010868 [Apis mellifera]
Length = 76
Score = 92.4 bits (228), Expect = 1e-17
Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGN 287
PP+LKKYMDKKL +K+N R VIG LRGFD FMN+V+D ++ E K +IGMVVIRGN
Sbjct: 6 PPELKKYMDKKLSLKLNGGRHVIGILRGFDPFMNMVIDESIEECKDGTKNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
SV+M+EAL+ +
Sbjct: 66 SVIMLEALDRI 76
>gb|AAX62416.1| small nuclear ribonucleoprotein G [Lysiphlebus testaceipes]
Length = 76
Score = 91.7 bits (226), Expect = 2e-17
Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGN 287
PP+LKKYMDKKL +K+N R VIG LRGFD FMN+V+D +V E + +IGMVVIRGN
Sbjct: 6 PPELKKYMDKKLSLKLNGGRHVIGILRGFDPFMNMVIDESVEECKDGSQNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
SV+M+EAL+ +
Sbjct: 66 SVIMLEALDRI 76
>ref|XP_728048.1| small nuclear ribonucleoprotein polypeptide G [Plasmodium yoelii
yoelii str. 17XNL]
gb|EAA19613.1| putative small nuclear ribonucleoprotein polypeptide G [Plasmodium
yoelii yoelii]
Length = 83
Score = 91.7 bits (226), Expect = 2e-17
Identities = 40/80 (50%), Positives = 62/80 (77%)
Frame = -3
Query: 493 VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD 314
+A+T+ ++G D +K+M+K+LQI +N NR+++G LRG+D FMNLV+DNTVE+ ++ +
Sbjct: 1 MALTVGKAGPASDFRKFMEKRLQIYLNGNRLIVGVLRGYDTFMNLVLDNTVEIKKDENIE 60
Query: 313 IGMVVIRGNSVVMIEALEPV 254
IG+VVIRGNS+ E L+ V
Sbjct: 61 IGIVVIRGNSISYWECLDKV 80
>ref|XP_742213.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
emb|CAH84531.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi]
Length = 83
Score = 91.7 bits (226), Expect = 2e-17
Identities = 40/80 (50%), Positives = 62/80 (77%)
Frame = -3
Query: 493 VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD 314
+A+T+ ++G D +K+M+K+LQI +N NR+++G LRG+D FMNLV+DNTVE+ ++ +
Sbjct: 1 MALTVGKAGPASDFRKFMEKRLQIYLNGNRLIVGVLRGYDTFMNLVLDNTVEIKKDENIE 60
Query: 313 IGMVVIRGNSVVMIEALEPV 254
IG+VVIRGNS+ E L+ V
Sbjct: 61 IGIVVIRGNSISYWECLDKV 80
>ref|XP_676547.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
emb|CAH97122.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 83
Score = 91.3 bits (225), Expect = 2e-17
Identities = 39/80 (48%), Positives = 62/80 (77%)
Frame = -3
Query: 493 VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD 314
+A+T+ ++G D +K+M+K+LQI +N NR+++G LRG+D FMNLV+DNT+E+ ++ +
Sbjct: 1 MALTVGKAGPASDFRKFMEKRLQIYLNGNRLIVGVLRGYDTFMNLVLDNTIEIKKDENIE 60
Query: 313 IGMVVIRGNSVVMIEALEPV 254
IG+VVIRGNS+ E L+ V
Sbjct: 61 IGIVVIRGNSISYWECLDKV 80
>gb|EAA07689.2| ENSANGP00000010868 [Anopheles gambiae str. PEST]
ref|XP_312222.2| ENSANGP00000010868 [Anopheles gambiae str. PEST]
Length = 76
Score = 90.5 bits (223), Expect = 4e-17
Identities = 42/71 (59%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGN 287
PP+LKKYMDK+L +K+N RVV G LRGFD FMN+VVD ++ E + +IGMVVIRGN
Sbjct: 6 PPELKKYMDKRLSLKLNGGRVVSGILRGFDPFMNVVVDESIEECKDGTRNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S++M+EAL+ +
Sbjct: 66 SIIMVEALDRI 76
>ref|NP_704332.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
emb|CAD51151.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 83
Score = 89.7 bits (221), Expect = 7e-17
Identities = 40/80 (50%), Positives = 61/80 (76%)
Frame = -3
Query: 493 VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD 314
+ +T+ ++G D +K+M+K+LQI +N NR V+G LRG+D FMNLV+DNT+E+ +++ D
Sbjct: 1 MTLTVGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQID 60
Query: 313 IGMVVIRGNSVVMIEALEPV 254
IG+VVIRGNS+ E L+ V
Sbjct: 61 IGVVVIRGNSISYWECLDKV 80
>gb|AAI06056.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gb|AAH70166.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gb|AAH51470.1| Small nuclear ribonucleoprotein polypeptide G [Mus musculus]
gb|AAH00070.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gb|AAH22432.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
ref|XP_600905.2| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
isoform 2 [Bos taurus]
ref|XP_855477.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Canis familiaris]
ref|XP_853582.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Canis familiaris]
ref|NP_003087.1| small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gb|AAH66302.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gb|AAI03237.1| Unknown (protein for MGC:128652) [Bos taurus]
dbj|BAB28732.1| unnamed protein product [Mus musculus]
emb|CAG33199.1| SNRPG [Homo sapiens]
dbj|BAB28480.1| unnamed protein product [Mus musculus]
gb|AAH94411.1| Small nuclear ribonucleoprotein polypeptide G [Mus musculus]
ref|NP_080782.1| small nuclear ribonucleoprotein polypeptide G [Mus musculus]
gb|AAX81996.1| unknown [Homo sapiens]
ref|XP_890802.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
gb|AAH27499.1| Small nuclear ribonucleoprotein polypeptide G [Mus musculus]
sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
emb|CAA59689.1| Sm protein G [Homo sapiens]
Length = 76
Score = 89.7 bits (221), Expect = 7e-17
Identities = 44/71 (61%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G LRGFD FMNLV+D VE+ + +IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65
Query: 286 SVVMIEALEPV 254
S++M+EALE V
Sbjct: 66 SIIMLEALERV 76
>ref|XP_380933.1| conserved hypothetical protein [Gibberella zeae PH-1]
gb|EAA70703.1| conserved hypothetical protein [Gibberella zeae PH-1]
Length = 84
Score = 86.3 bits (212), Expect = 7e-16
Identities = 42/70 (60%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN-DKTDIGMVVIRGNS 284
P+LKKY+DK+L +++N +R VIG LRG+D F+N+V+D VE N +K IGMVVIRGNS
Sbjct: 6 PELKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEKDNGEKVRIGMVVIRGNS 65
Query: 283 VVMIEALEPV 254
VVM+EALE +
Sbjct: 66 VVMLEALERI 75
>gb|EAQ93863.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 83
Score = 85.5 bits (210), Expect = 1e-15
Identities = 40/70 (57%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN-DKTDIGMVVIRGNS 284
P+LKKY+DK+L +++N +R V+G LRG+D F+N+V+D+ VE N +K +GMVVIRGNS
Sbjct: 6 PELKKYLDKRLFVQLNGSRKVLGVLRGYDVFLNIVLDDAVEEKDNGEKVKLGMVVIRGNS 65
Query: 283 VVMIEALEPV 254
VVM+EALE +
Sbjct: 66 VVMLEALERI 75
>ref|XP_747301.1| small nuclear ribonucleoprotein SmG [Aspergillus fumigatus Af293]
gb|EAL85263.1| small nuclear ribonucleoprotein SmG, putative [Aspergillus
fumigatus Af293]
Length = 78
Score = 85.1 bits (209), Expect = 2e-15
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGNS 284
P+LKKYM+K++ ++N NR VIG LRG+D FMN+V+D E G +K IGMVVIRGNS
Sbjct: 6 PELKKYMEKRVFCQLNGNRKVIGVLRGYDVFMNIVLDEAFEEKQGGEKVAIGMVVIRGNS 65
Query: 283 VVMIEALEPVA 251
VVM+EALE ++
Sbjct: 66 VVMLEALERIS 76
>ref|XP_958647.1| hypothetical protein [Neurospora crassa N150]
ref|XP_330802.1| hypothetical protein [Neurospora crassa]
gb|EAA29411.1| hypothetical protein [Neurospora crassa]
Length = 85
Score = 85.1 bits (209), Expect = 2e-15
Identities = 40/70 (57%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGNS 284
P+LKKY+DK+L +++N +R VIG LRG+D F+N+V+D+ V E +G +K +GMV IRGNS
Sbjct: 6 PELKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDGGEKVKLGMVTIRGNS 65
Query: 283 VVMIEALEPV 254
VVM+EALE +
Sbjct: 66 VVMMEALERI 75
>emb|CAE60496.1| Hypothetical protein CBG04114 [Caenorhabditis briggsae]
Length = 77
Score = 85.1 bits (209), Expect = 2e-15
Identities = 43/73 (58%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV--NGNDKTDIGMVVIRG 290
PP+LKKYMDK++++K+N NR V G LRGFD FMN+V+D VE NGN ++GM VIRG
Sbjct: 6 PPELKKYMDKEIELKLNGNRHVSGILRGFDPFMNMVIDEAVEYPKNGN-SINLGMTVIRG 64
Query: 289 NSVVMIEALEPVA 251
NSVV++E E V+
Sbjct: 65 NSVVIMEPKERVS 77
>ref|XP_659099.1| hypothetical protein AN1495.2 [Aspergillus nidulans FGSC A4]
gb|EAA63808.1| hypothetical protein AN1495.2 [Aspergillus nidulans FGSC A4]
Length = 78
Score = 84.7 bits (208), Expect = 2e-15
Identities = 41/71 (57%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN-GNDKTDIGMVVIRGNS 284
P+LKKYM+K++ ++N NR VIG LRG+D FMN+V+D E G +K IGM+VIRGNS
Sbjct: 6 PELKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEEKPGGEKVAIGMIVIRGNS 65
Query: 283 VVMIEALEPVA 251
VVM+EALE ++
Sbjct: 66 VVMLEALERIS 76
>ref|XP_639367.1| hypothetical protein DDB0204999 [Dictyostelium discoideum]
gb|EAL66011.1| hypothetical protein DDB0204999 [Dictyostelium discoideum]
Length = 85
Score = 83.2 bits (204), Expect = 6e-15
Identities = 41/71 (57%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNS 284
PDL K +DKKL IK+N NR V G LRGFD FMN+ + +TVE V+ +K +IGMV+IRGNS
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNS 68
Query: 283 VVMIEALEPVA 251
++++E LE +A
Sbjct: 69 ILLMEPLESMA 79
>ref|XP_916352.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 640
Score = 82.8 bits (203), Expect = 8e-15
Identities = 49/101 (48%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = -3
Query: 553 VSCIRRSELANPFLSRVRG*VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFD 374
++CI S L R R VA + + PP+LKK+MDKKL +K+N R V G L GFD
Sbjct: 548 ITCITPSPLC-----RARRGVATSKAH---PPELKKFMDKKLSLKLNGGRHVQGILLGFD 599
Query: 373 QFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVVMIEALEPV 254
FMNLV D VE+ + +I MVVIRGNS++ +EALE V
Sbjct: 600 PFMNLVTDECVEMATSGQQNNISMVVIRGNSIIKLEALERV 640
>gb|AAF36015.1| Small nuclear ribonucleoprotein protein 7 [Caenorhabditis elegans]
ref|NP_491032.1| Small Nuclear Ribonucleoprotein family member (snr-7)
[Caenorhabditis elegans]
gb|AAG50222.1| SM protein G [Caenorhabditis elegans]
sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 77
Score = 81.6 bits (200), Expect = 2e-14
Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKKYMDK++ +K+N NR V G LRGFD FMN+V+D VE ++GM VIRGN
Sbjct: 6 PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGN 65
Query: 286 SVVMIEALEPVA 251
SVV++E E ++
Sbjct: 66 SVVIMEPKERIS 77
>ref|XP_484457.3| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 99
Score = 81.3 bits (199), Expect = 2e-14
Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G L GFD FMNLV D VE+ + +I MVVIRGN
Sbjct: 29 PPELKKFMDKKLSLKLNGGRHVQGILLGFDPFMNLVTDECVEMATSGQQNNISMVVIRGN 88
Query: 286 SVVMIEALEPV 254
S++ +EALE V
Sbjct: 89 SIIKLEALERV 99
>emb|CAI74283.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
ref|XP_952015.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
Length = 82
Score = 80.1 bits (196), Expect = 5e-14
Identities = 33/68 (48%), Positives = 54/68 (79%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVV 278
DL+++M+K+L + +N +R V+G LRG+D FMN+V+DN +EV G ++ D+G+VV+RGNS++
Sbjct: 12 DLRRFMEKRLDVHLNGSRHVVGVLRGYDTFMNIVLDNALEVVGEEQVDLGVVVVRGNSIL 71
Query: 277 MIEALEPV 254
E L+ V
Sbjct: 72 YWECLDRV 79
>gb|AAX30638.1| SJCHGC06306 protein [Schistosoma japonicum]
Length = 76
Score = 77.4 bits (189), Expect = 3e-13
Identities = 38/77 (49%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGM 305
MS++ QP +LKKY+DK+L++K+NANR V+G LRGFD FMN+VV + EV + I M
Sbjct: 1 MSKAHQP-ELKKYLDKRLRLKLNANREVVGILRGFDAFMNIVVSDAYEVTKDGTQIKIDM 59
Query: 304 VVIRGNSVVMIEALEPV 254
V+RGNS+ ++E ++ +
Sbjct: 60 AVVRGNSINIVEGVDRI 76
>ref|XP_883617.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
isoform 3 [Bos taurus]
gb|AAH35103.1| SNRPG protein [Homo sapiens]
dbj|BAE43250.1| unnamed protein product [Mus musculus]
Length = 64
Score = 77.0 bits (188), Expect = 4e-13
Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVVMIEA 266
MDKKL +K+N R V G LRGFD FMNLV+D VE+ + +IGMVVIRGNS++M+EA
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 60
Query: 265 LEPV 254
LE V
Sbjct: 61 LERV 64
>ref|XP_621683.2| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
ref|XP_915804.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 257
Score = 77.0 bits (188), Expect = 4e-13
Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP LKK MDKKL +K+N R V G +GFD FMNLV+D VE+ NG + +IG VV GN
Sbjct: 46 PPKLKKLMDKKLSLKLNGGRHVQGMPQGFDPFMNLVIDERVEIANGRQQNNIGTVVRWGN 105
Query: 286 SVVMIEALEPV 254
++M EALE V
Sbjct: 106 GIIMSEALERV 116
>gb|AAS56789.1| YFL017W-A [Saccharomyces cerevisiae]
emb|CAA86353.1| unnamed protein product [Saccharomyces cerevisiae]
ref|NP_116636.1| Core Sm protein Sm G; part of heteroheptameric complex (with Smb1p,
Smd1p, Smd2p, Smd3p, Sme1p, and Smx3p) that is part of
the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of
human Sm G; Smx2p [Saccharomyces cerevisiae]
sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
gb|AAB63977.1| small nuclear ribonucleoprotein E [Saccharomyces cerevisiae]
Length = 77
Score = 75.5 bits (184), Expect = 1e-12
Identities = 35/73 (47%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD---IGM-VVIR 293
P+LKKYMDKK+ + +N +R V G LRG+D F+N+V+D+ +E+NG D + +G+ VIR
Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIR 64
Query: 292 GNSVVMIEALEPV 254
GNS++ +EAL+ +
Sbjct: 65 GNSIISLEALDAI 77
>emb|CAA19285.1| SPBC4B4.05 [Schizosaccharomyces pombe]
ref|NP_596422.1| hypothetical protein SPBC4B4.05 [Schizosaccharomyces pombe 972h-]
sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
pir||T40477 small nuclear ribonucleoprotein - fission yeast
(Schizosaccharomyces pombe)
Length = 77
Score = 75.5 bits (184), Expect = 1e-12
Identities = 38/76 (50%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDIG 308
MS++G P DLKKY+D+++ +++N +R V G LRG+D F+N+V+++++E V+G +K IG
Sbjct: 1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIG 58
Query: 307 MVVIRGNSVVMIEALE 260
V IRGNSV+MIE L+
Sbjct: 59 SVAIRGNSVIMIETLD 74
>ref|XP_788177.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Strongylocentrotus purpuratus]
Length = 126
Score = 75.5 bits (184), Expect = 1e-12
Identities = 38/64 (59%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDN-TVEVNGNDKTDIGMVVIRGNSVVMIEA 266
MDKK +IK+N NR V G LRGFD FMNLV+D T +++ K DIGMVV+RGNS++++EA
Sbjct: 63 MDKK-KIKLNGNRRVTGVLRGFDPFMNLVIDEATEDISTTQKNDIGMVVVRGNSIILLEA 121
Query: 265 LEPV 254
L+ V
Sbjct: 122 LDRV 125
>gb|EAR82425.1| Sm protein [Tetrahymena thermophila SB210]
Length = 86
Score = 74.3 bits (181), Expect = 3e-12
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = -3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK-TDIG 308
T+ + G PDL+KY K+L + +NA R V GT++G D +MN+V+DN E+ G DK +IG
Sbjct: 9 TLHKQGYGPDLQKYNGKRLLVYLNARRRVQGTVKGHDNYMNIVLDNAQEIIGKDKFVNIG 68
Query: 307 MVVIRGNSVVMIEALE 260
VIRGNS++ + LE
Sbjct: 69 KAVIRGNSIIRWDCLE 84
>ref|XP_899672.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 196
Score = 72.4 bits (176), Expect = 1e-11
Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G L GFD FMNLV+D VE+ + +IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVRGILWGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65
>ref|XP_911315.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 196
Score = 72.4 bits (176), Expect = 1e-11
Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGN 287
PP+LKK+MDKKL +K+N R V G L GFD FMNLV+D VE+ + +IGMVVIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVRGILWGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65
>gb|EAL18583.1| hypothetical protein CNBJ0090 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 78
Score = 71.6 bits (174), Expect = 2e-11
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 305
MSR+ QP +LKK+MD++L + + R + G LRG+D F+NLVVD+ E+ G + GM
Sbjct: 1 MSRASQP-ELKKFMDRRLFLHLQGGRQISGVLRGYDMFLNLVVDSAFEELGGGQRKPCGM 59
Query: 304 VVIRGNSVVMIEALE 260
VVIRGNSV +E L+
Sbjct: 60 VVIRGNSVSAMELLD 74
>ref|XP_453405.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00501.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 71
Score = 70.1 bits (170), Expect = 5e-11
Identities = 32/65 (49%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = -3
Query: 451 KKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIG-MVVIRGNSVVM 275
K+YMDKKL +++N NR +IG LRG+D F+NLV+DN +++ + +G V+RGNS+V
Sbjct: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
Query: 274 IEALE 260
IE L+
Sbjct: 65 IEPLD 69
>ref|XP_650141.1| small nuclear ribonucleoprotein G [Entamoeba histolytica HM-1:IMSS]
gb|EAL44755.1| small nuclear ribonucleoprotein G, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 81
Score = 70.1 bits (170), Expect = 5e-11
Identities = 31/73 (42%), Positives = 53/73 (72%), Gaps = 4/73 (5%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD----IGMVVIR 293
P+LK Y++K++ +K++ R +IG L G+D++MNLV+D + + N TD IGM++IR
Sbjct: 6 PELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDAS-NPDTDKHIPIGMIMIR 64
Query: 292 GNSVVMIEALEPV 254
GNS++ +E ++PV
Sbjct: 65 GNSILSVETIDPV 77
>ref|XP_744515.1| hypothetical protein PC001427.02.0 [Plasmodium chabaudi chabaudi]
emb|CAH78948.1| hypothetical protein PC001427.02.0 [Plasmodium chabaudi]
Length = 60
Score = 69.3 bits (168), Expect = 9e-11
Identities = 30/57 (52%), Positives = 44/57 (77%)
Frame = -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPV 254
+ +N NR+++G LRG+D FMNLV+DNTVE+ ++ +IG+VVIRGNS+ E L+ V
Sbjct: 1 VYLNGNRLIVGVLRGYDTFMNLVLDNTVEIKKDENIEIGIVVIRGNSISYWECLDKV 57
>ref|XP_757672.1| hypothetical protein UM01525.1 [Ustilago maydis 521]
gb|EAK82580.1| hypothetical protein UM01525.1 [Ustilago maydis 521]
Length = 134
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 9/105 (8%)
Frame = -3
Query: 541 RRSELANPFLSRVRG*VAVTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMN 362
R S L + +L + V M++ QP +LK+++DK++ + + R + GTLRGFD F+N
Sbjct: 28 RTSSLHDLYLPLAQLEVLRKMAKVSQP-ELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLN 86
Query: 361 LVVDNTVE----VNGN-----DKTDIGMVVIRGNSVVMIEALEPV 254
LVVD +E GN D G VV+RGNSV +EALE V
Sbjct: 87 LVVDEAIEQVHPEAGNPNVWQDGDRCGTVVVRGNSVTSLEALENV 131
>ref|XP_765266.1| small nuclear ribonucleoprotein G [Theileria parva strain Muguga]
gb|EAN32983.1| small nuclear ribonucleoprotein G, putative [Theileria parva]
Length = 86
Score = 68.2 bits (165), Expect = 2e-10
Identities = 29/57 (50%), Positives = 44/57 (77%)
Frame = -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPV 254
+ +N +R V+G LRG+D FMN+V+DN +EV G D+ D+G+VV+RGNS++ E L+ V
Sbjct: 27 VHLNGSRHVVGVLRGYDTFMNIVLDNALEVVGEDQVDLGVVVVRGNSILYWECLDRV 83
>ref|XP_651637.1| small nuclear ribonucleoprotein G [Entamoeba histolytica HM-1:IMSS]
gb|EAL46262.1| small nuclear ribonucleoprotein G, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 81
Score = 67.4 bits (163), Expect = 4e-10
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD----IGMVVIR 293
P+LK Y++K++ +K++ R +IG L G+D++MNLV+D + + N TD IGM++I
Sbjct: 6 PELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDAS-NPDTDKHIPIGMIMIL 64
Query: 292 GNSVVMIEALEPV 254
GNS++ +E ++PV
Sbjct: 65 GNSILSVETIDPV 77
>dbj|BAE55684.1| unnamed protein product [Aspergillus oryzae]
Length = 122
Score = 67.4 bits (163), Expect = 4e-10
Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGNSVVMIE 269
M+K++ ++N NR VIG LRG+D FMN+V+D E G +K IGMVVIRGNSVVM+E
Sbjct: 1 MEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMVVIRGNSVVMLE 59
>gb|AAS53882.1| AFR511Cp [Ashbya gossypii ATCC 10895]
ref|NP_986058.1| AFR511Cp [Eremothecium gossypii]
Length = 76
Score = 65.9 bits (159), Expect = 1e-09
Identities = 32/72 (44%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIG-MVVIRGN 287
P+LKKYM++K+ +++N R V+G LRG+D F+N+V+D+ VE+ K +G +IRGN
Sbjct: 5 PELKKYMERKVFLQLNGARKVVGVLRGYDLFLNVVLDDAVEITRTGGKHGLGDHTIIRGN 64
Query: 286 SVVMIEALEPVA 251
S+V +E LE ++
Sbjct: 65 SIVSLELLESLS 76
>ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1]
gb|EAA71632.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1]
Length = 131
Score = 63.9 bits (154), Expect = 4e-09
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKT-DIGMVVIR 293
DL KYMDK++ +K N R V GTL+G+D MNLV+D+ EV GN+ T +G+VV+R
Sbjct: 46 DLGKYMDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNESTRSLGLVVVR 105
Query: 292 GNSVVMIEALE 260
G +V++ ++
Sbjct: 106 GTLLVLVSPVD 116
>ref|XP_758502.1| hypothetical protein UM02355.1 [Ustilago maydis 521]
gb|EAK83393.1| hypothetical protein UM02355.1 [Ustilago maydis 521]
Length = 175
Score = 63.5 bits (153), Expect = 5e-09
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV------NGNDKT-DIGMVV 299
DL KYMD+K+++K R V GTL+GFDQ MNLV+D E N DKT ++G+VV
Sbjct: 90 DLSKYMDQKIRVKFAGGREVFGTLKGFDQLMNLVMDEVTESVRDEEGNVTDKTRNLGLVV 149
Query: 298 IRGNSVVMI 272
+RG ++ +I
Sbjct: 150 LRGTALTVI 158
>ref|XP_798585.1| PREDICTED: similar to LSM7 homolog, U6 small nuclear RNA associated
[Strongylocentrotus purpuratus]
Length = 123
Score = 62.0 bits (149), Expect = 1e-08
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN---------GNDKTDIGM 305
DL KY+DK++++K R V G L+GFD +NLV+D T E +D ++G+
Sbjct: 35 DLSKYIDKQIRVKFQGGREVTGVLKGFDPLLNLVLDGTTEFMRDPDDPFKLTDDTRNLGL 94
Query: 304 VVIRGNSVVMI---EALEPVA 251
V RG SVV+I E +EP+A
Sbjct: 95 AVCRGTSVVLICPAEGMEPIA 115
>gb|EAQ89994.1| hypothetical protein CHGG_06613 [Chaetomium globosum CBS 148.51]
Length = 139
Score = 61.6 bits (148), Expect = 2e-08
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKT-DIGMVVIR 293
DLKKYMDK++ +K N R G L+G+D MNLV+D E+ GN+ T +G+VV+R
Sbjct: 54 DLKKYMDKRITVKFNGGREATGVLKGYDALMNLVLDEVEELLRDDEGNEMTRPLGLVVVR 113
Query: 292 GNSVVMIEALE 260
G +V++ ++
Sbjct: 114 GTLLVVLSPVD 124
>ref|XP_232769.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Rattus norvegicus]
Length = 109
Score = 61.2 bits (147), Expect = 3e-08
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -3
Query: 466 QPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGND 323
+PP+LKK+MDKKL + +N+ R V G LRGFD FM LV+D VE+ D
Sbjct: 5 RPPELKKFMDKKLSLMLNSGRQVQGILRGFDPFMKLVIDGCVEMRNED 52
>ref|XP_658371.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4]
gb|EAA65409.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4]
Length = 136
Score = 60.5 bits (145), Expect = 4e-08
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKT-DIGMVVIR 293
DL KYMDK++++K N R V G L+G+DQ MNLV+D+ E GN+ T +G++V R
Sbjct: 52 DLTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRDDEGNETTRALGLIVAR 111
Query: 292 GNSVVMI 272
G +V+I
Sbjct: 112 GTLIVLI 118
>gb|AAW45898.1| hypothetical protein CNJ03360 [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_567415.1| hypothetical protein CNJ03360 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 71
Score = 60.1 bits (144), Expect = 6e-08
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGMVVIRGNSVVMI 272
++MD++L + + R + G LRG+D F+NLVVD+ E+ G + GMVVIRGNSV +
Sbjct: 4 EFMDRRLFLHLQGGRQISGVLRGYDMFLNLVVDSAFEELGGGQRKPCGMVVIRGNSVSAM 63
Query: 271 EALE 260
E L+
Sbjct: 64 ELLD 67
>emb|CAA86879.1| orf2 [Saccharomyces cerevisiae]
emb|CAA96030.1| unnamed protein product [Saccharomyces cerevisiae]
ref|NP_014252.1| Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p
and either Lsm1p or 8p): cytoplasmic Lsm1p complex
involved in mRNA decay; nuclear Lsm8p complex part of U6
snRNP and possibly involved in processing tRNA, snoRNA,
and rRNA; Lsm7p [Saccharomyces cerevisiae]
sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3
Length = 107
Score = 59.7 bits (143), Expect = 7e-08
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 12/78 (15%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTD------------ 314
DL KY D K+++K+ ++VIG L+G+DQ MNLV+D+TVE N +
Sbjct: 21 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 80
Query: 313 IGMVVIRGNSVVMIEALE 260
+G+ VIRG +V + + E
Sbjct: 81 LGLTVIRGTILVSLSSAE 98
>ref|XP_908742.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
ref|XP_898241.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
ref|XP_914445.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 71
Score = 58.2 bits (139), Expect = 2e-07
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN-GNDKTDIGMVVIRGNSV 281
+LK +M+ KL +K+N R + G L+GFD FMNLV D V++ + +IG I GNS+
Sbjct: 8 ELKTFMENKLSLKLNGGRYIQGILQGFDPFMNLVTDKYVKMAISGQQNNIGW--ITGNSI 65
Query: 280 VMIEAL 263
+M+EAL
Sbjct: 66 IMLEAL 71
>ref|XP_964114.1| hypothetical protein [Neurospora crassa N150]
ref|XP_329120.1| hypothetical protein [Neurospora crassa]
gb|EAA34878.1| hypothetical protein [Neurospora crassa]
Length = 132
Score = 57.4 bits (137), Expect = 4e-07
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVV 278
DLKKYMD+++ +K N R V GTL+G+D MNLV+D+ E G+VV RG +V
Sbjct: 57 DLKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR------GLVVARGTLLV 110
Query: 277 MIEALE 260
+I ++
Sbjct: 111 VISPVD 116
>gb|AAH74231.1| MGC83430 protein [Xenopus laevis]
Length = 103
Score = 57.0 bits (136), Expect = 5e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>gb|EAA12576.2| ENSANGP00000010565 [Anopheles gambiae str. PEST]
ref|XP_317337.2| ENSANGP00000010565 [Anopheles gambiae str. PEST]
Length = 100
Score = 57.0 bits (136), Expect = 5e-07
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV--------NGNDKTDIGMV 302
DL KY++K +++K R G L+G+D +NLV+DNT+E +D +G+V
Sbjct: 13 DLSKYLEKTIRVKFAGGREAAGVLKGYDPLLNLVLDNTIEFLRDPDDYKLADDTRHLGLV 72
Query: 301 VIRGNSVVMI 272
V RG SVV+I
Sbjct: 73 VCRGTSVVLI 82
>emb|CAG08031.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 57.0 bits (136), Expect = 5e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQMKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>ref|XP_854995.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm7
[Canis familiaris]
Length = 103
Score = 57.0 bits (136), Expect = 5e-07
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D TVE + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTVEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>ref|XP_707705.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm7
isoform 2 [Danio rerio]
Length = 107
Score = 57.0 bits (136), Expect = 5e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 18 DLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 77
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 78 VVCRGTSVVLI 88
>ref|XP_684914.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm7
isoform 1 [Danio rerio]
Length = 103
Score = 57.0 bits (136), Expect = 5e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>ref|NP_057283.1| U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]
ref|XP_586985.2| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm7
isoform 1 [Bos taurus]
gb|AAG45442.1| U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]
gb|AAH18621.1| U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]
gb|AAD56231.1| U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]
sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7
Length = 103
Score = 56.6 bits (135), Expect = 6e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>ref|XP_343158.1| PREDICTED: similar to LSM7 homolog, U6 small nuclear RNA associated
[Rattus norvegicus]
Length = 103
Score = 56.6 bits (135), Expect = 6e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>ref|XP_512258.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm7 [Pan
troglodytes]
Length = 131
Score = 56.6 bits (135), Expect = 6e-07
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 42 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 101
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 102 VVCRGTSVVLI 112
>ref|NP_178480.1| unknown protein [Arabidopsis thaliana]
ref|NP_849931.1| unknown protein [Arabidopsis thaliana]
gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana]
gb|AAO23652.1| At2g03870 [Arabidopsis thaliana]
Length = 99
Score = 56.2 bits (134), Expect = 8e-07
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 305
DL K++DK +Q+K+ R V GTL+G+DQ +NLV+D VE + D+T +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 304 VVIRGNSVVMI 272
+V RG +V+++
Sbjct: 70 IVCRGTAVMLV 80
>ref|NP_701457.1| u6 snRNA-associated Sm-like protein, putative [Plasmodium
falciparum 3D7]
gb|AAN36181.1| u6 snRNA-associated Sm-like protein, putative [Plasmodium
falciparum 3D7]
Length = 108
Score = 55.8 bits (133), Expect = 1e-06
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN--------DKT-DIGM 305
D+KK+M++K+++K + R V+GTL G D NLV+D T E + DKT IG+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGL 79
Query: 304 VVIRGNSVVMIEALE 260
+V RG SV +I +E
Sbjct: 80 IVARGTSVALITPVE 94
>gb|AAH81444.1| LSM7 homolog, U6 small nuclear RNA associated [Mus musculus]
ref|NP_079625.1| LSM7 homolog, U6 small nuclear RNA associated [Mus musculus]
dbj|BAB22540.1| unnamed protein product [Mus musculus]
dbj|BAB28806.1| unnamed protein product [Mus musculus]
dbj|BAB28245.1| unnamed protein product [Mus musculus]
dbj|BAB25051.1| unnamed protein product [Mus musculus]
ref|XP_908632.1| PREDICTED: similar to LSM7 homolog, U6 small nuclear RNA associated
[Mus musculus]
gb|AAH27511.1| LSM7 homolog, U6 small nuclear RNA associated [Mus musculus]
sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7
Length = 103
Score = 55.8 bits (133), Expect = 1e-06
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+DK +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 74 VVCRGTSVVLI 84
>gb|EAQ71302.1| hypothetical protein MGG_ch7g709 [Magnaporthe grisea 70-15]
Length = 82
Score = 55.8 bits (133), Expect = 1e-06
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKT-DIGMVVIRGNSVV 278
MDK++Q+K N R VIGTL+G+D MNLV+D E GN+ + +G+VV+RG +V
Sbjct: 1 MDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRDEEGNESSRPLGLVVVRGTLLV 60
Query: 277 MI 272
I
Sbjct: 61 AI 62
>ref|XP_480353.1| putative snRNP splicing factor -related [Oryza sativa (japonica
cultivar-group)]
dbj|BAD03046.1| putative snRNP splicing factor -related [Oryza sativa (japonica
cultivar-group)]
dbj|BAD03242.1| putative snRNP splicing factor -related [Oryza sativa (japonica
cultivar-group)]
Length = 98
Score = 55.5 bits (132), Expect = 1e-06
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN---------GNDKTDIGM 305
DL K++DK +Q+K+ R V GTL+G+DQ +NLV+D VE +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGL 69
Query: 304 VVIRGNSVVMI 272
+V RG +V+++
Sbjct: 70 IVCRGTAVMLV 80
>gb|ABA27350.1| mRNA splicing factor snRNPG [Bigelowiella natans]
Length = 71
Score = 55.5 bits (132), Expect = 1e-06
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSV 281
PDLK +M++++QI++ + GTLRGFDQF+N+V++ + ++ DI +++RGNS+
Sbjct: 8 PDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSYSKESNYFDI--LIVRGNSI 65
Query: 280 VMIEAL 263
+ + L
Sbjct: 66 ISVSKL 71
>gb|AAD05369.1| small nucleolar ribonucleoprotein E homolog [Chlorarachnion
CCMP621]
Length = 71
Score = 54.7 bits (130), Expect = 2e-06
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSV 281
PDLK +M++++QI++ + GTLRGFDQF+N+V++ + ++ DI +++RGNS+
Sbjct: 8 PDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSYSKESNYFDI--LIVRGNSI 65
Query: 280 VMIEAL 263
+ + L
Sbjct: 66 MSVSKL 71
>emb|CAG31541.1| hypothetical protein [Gallus gallus]
ref|NP_001006337.1| LSM7 homolog, U6 small nuclear RNA associated [Gallus gallus]
Length = 116
Score = 54.3 bits (129), Expect = 3e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
DL KY+ K +++K R G L+GFD +NLV+D T+E + D +G+
Sbjct: 27 DLSKYIGKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 86
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 87 VVCRGTSVVLI 97
>gb|ABD36138.1| U6 snRNA-associated Sm-like protein [Bombyx mori]
Length = 118
Score = 54.3 bits (129), Expect = 3e-06
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNG---------NDKTDIGM 305
DL KY++K +++K R G L+G+D +NLV+DNT E +D +G+
Sbjct: 30 DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 89
Query: 304 VVIRGNSVVMI 272
VV RG SVV+I
Sbjct: 90 VVCRGTSVVLI 100
>gb|AAW46688.1| U6 snRNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_568205.1| U6 snRNA binding protein [Cryptococcus neoformans var. neoformans
JEC21]
gb|EAL18700.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 131
Score = 54.3 bits (129), Expect = 3e-06
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDIGMVVIRGNS 284
+L +++DK +++K R G L+G+DQ MNLV+D+ VE +G +G+VV+RG +
Sbjct: 28 NLAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPN 87
Query: 283 VVMI 272
+V++
Sbjct: 88 IVLV 91
>ref|XP_636181.1| hypothetical protein DDB0188448 [Dictyostelium discoideum]
gb|EAL62681.1| hypothetical protein DDB0188448 [Dictyostelium discoideum]
Length = 97
Score = 53.9 bits (128), Expect = 4e-06
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---------VNGNDKTDIGM 305
DL+K++ K++ +K R V G L+G+DQ +N+ +D T E + ++K +G+
Sbjct: 14 DLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGL 73
Query: 304 VVIRGNSVVMI---EALEPV 254
VV RG+SV+M+ E EP+
Sbjct: 74 VVCRGSSVMMVCPTEGCEPI 93
>emb|CAA93428.1| Hypothetical protein ZK593.7 [Caenorhabditis elegans]
ref|NP_502034.1| LSM Sm-like protein family member (lsm-7) [Caenorhabditis elegans]
Length = 104
Score = 53.5 bits (127), Expect = 5e-06
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---------VNGNDKTDIGM 305
DL +++DK++++K R G LRGFDQ +N+V+D+ E V G++ +G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 304 VVIRGNSVVMI---EALEPVA 251
+V RG ++ ++ + LE +A
Sbjct: 75 IVARGTAITVVSPADGLEQIA 95
>ref|XP_829487.1| small nuclear ribonucleoprotein Sm-G [Trypanosoma brucei TREU927]
gb|AAG00460.1| Sm-G [Trypanosoma brucei]
gb|EAN80375.1| small nuclear ribonucleoprotein Sm-G [Trypanosoma brucei]
Length = 82
Score = 53.5 bits (127), Expect = 5e-06
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-------VNGNDKTDIGMVV 299
+L +M+K++++K+ + R + G LRG D+FM++V+ + V+ V DKT +G V
Sbjct: 9 NLNHFMEKRVKVKLTSGRSISGELRGVDEFMSIVLYDAVDETPTSGTVENEDKTSLGTAV 68
Query: 298 IRGNSVVMIEALE 260
+RG +V I LE
Sbjct: 69 VRGAMIVDIVGLE 81
>gb|EAL33603.1| GA12164-PA [Drosophila pseudoobscura]
Length = 110
Score = 53.5 bits (127), Expect = 5e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----------VNGNDKTDIG 308
DL KY++K++++K R G L+G+D +NLV+DNTVE + + +G
Sbjct: 23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEDSTRSLG 82
Query: 307 MVVIRGNSVVMI 272
+VV RG ++V+I
Sbjct: 83 LVVCRGTALVLI 94
>emb|CAF32144.1| u6 snrna-associated sm-like protein, putative [Aspergillus
fumigatus]
ref|XP_752799.1| small nuclear ribonucleoprotein LSM7 [Aspergillus fumigatus Af293]
gb|EAL90761.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
fumigatus Af293]
Length = 134
Score = 53.5 bits (127), Expect = 5e-06
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSV 281
DL KYMDK++++K N R V G L+G+DQ MNLV+D+ E + G DI + NS
Sbjct: 54 DLSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEVSNSA 113
Query: 280 VMI 272
+ +
Sbjct: 114 IQM 116
>emb|CAA20851.1| SPCC285.12 [Schizosaccharomyces pombe]
ref|NP_588340.1| hypothetical protein SPCC285.12 [Schizosaccharomyces pombe 972h-]
Length = 113
Score = 53.1 bits (126), Expect = 7e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK--------TDIGMV 302
DL +Y D+++Q R + G L+GFDQ MNLV+D+ E N + +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 301 VIRGNSVVMIEALE 260
V+RG ++V+I ++
Sbjct: 87 VVRGTTLVLIAPMD 100
>ref|NP_609807.1| CG13277-PA [Drosophila melanogaster]
gb|AAM29642.1| RH73529p [Drosophila melanogaster]
gb|AAF53562.1| CG13277-PA [Drosophila melanogaster]
Length = 110
Score = 53.1 bits (126), Expect = 7e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----------VNGNDKTDIG 308
DL KY++K++++K R G L+G+D +NLV+DNTVE + +G
Sbjct: 23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLG 82
Query: 307 MVVIRGNSVVMI 272
+VV RG ++V+I
Sbjct: 83 LVVCRGTALVLI 94
>dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
ref|NP_111594.1| Small nuclear ribonucleoprotein (snRNP) homolog [Thermoplasma
volcanium GSS1]
Length = 71
Score = 53.1 bits (126), Expect = 7e-06
Identities = 25/61 (40%), Positives = 43/61 (70%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L++ ++K++ + + NRV+ GTL G+D +MN+V+D+ E + N +G VVIRG++VV
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVSRKLGTVVIRGSNVVR 67
Query: 274 I 272
I
Sbjct: 68 I 68
>emb|CAE61961.1| Hypothetical protein CBG05961 [Caenorhabditis briggsae]
Length = 103
Score = 53.1 bits (126), Expect = 7e-06
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---------VNGNDKTDIGM 305
DL +++DK++++K R G LRGFDQ +N+V+D+ E V G++ +G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVIGDETRPLGL 74
Query: 304 VVIRGNSVVMI---EALEPVA 251
+V RG ++ ++ + LE +A
Sbjct: 75 IVARGTAITVVSPADGLEQIA 95
>gb|EAM93879.1| Small nuclear ribonucleoprotein (Sm protein) [Ferroplasma
acidarmanus Fer1]
ref|ZP_00609694.1| Small nuclear ribonucleoprotein (Sm protein) [Ferroplasma
acidarmanus Fer1]
Length = 71
Score = 53.1 bits (126), Expect = 7e-06
Identities = 25/61 (40%), Positives = 44/61 (72%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L++ ++KK+ + + NR ++GTL G+D++MN+ +D+ E NG + IG V+IRG++VV
Sbjct: 9 LEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDD-AEENGEVQRKIGKVIIRGSNVVR 67
Query: 274 I 272
I
Sbjct: 68 I 68
>ref|XP_454984.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00071.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 110
Score = 52.8 bits (125), Expect = 9e-06
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 10/76 (13%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----------VNGNDKTDIG 308
+L +Y D ++++K R+V G L+G+D+ MNLV+D TVE ++ + IG
Sbjct: 28 NLAQYKDTEVRVKFIGGRLVTGILKGYDELMNLVLDETVEYARDPEDETIIHKDQAKKIG 87
Query: 307 MVVIRGNSVVMIEALE 260
+VVIRG +++ + +LE
Sbjct: 88 LVVIRGTALLSLCSLE 103
>emb|CAC12056.1| hypothetical protein [Thermoplasma acidophilum]
ref|NP_394385.1| hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
Length = 67
Score = 52.8 bits (125), Expect = 9e-06
Identities = 24/61 (39%), Positives = 43/61 (70%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L++ ++K++ + + NRV+ G L GFD++MN+V+D+ E + N +G VV+RG++VV
Sbjct: 4 LEESVNKRVSLLLKDNRVLEGVLTGFDEYMNMVLDDVDENSENVSRKLGTVVVRGSNVVR 63
Query: 274 I 272
I
Sbjct: 64 I 64
>gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 52.8 bits (125), Expect = 9e-06
Identities = 25/61 (40%), Positives = 44/61 (72%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L++ ++KK+ + + NRV+ GTL G+D++MN+ +D+ E +G + +G VVIRG++VV
Sbjct: 9 LEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDD-AEESGETQRKLGTVVIRGSNVVR 67
Query: 274 I 272
I
Sbjct: 68 I 68
>emb|CAG60907.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_447956.1| unnamed protein product [Candida glabrata]
Length = 117
Score = 52.4 bits (124), Expect = 1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNT-------VEVNGNDKT--DIGM 305
DL KY D K+ +K+ R+V G L+G+DQ MNLV++ T VE + +G+
Sbjct: 33 DLGKYKDSKVSVKLMGGRIVTGILKGYDQLMNLVLEETEETLKPEVETGATQQVTRQLGL 92
Query: 304 VVIRGNSVVMIEALE 260
VIRG ++ + L+
Sbjct: 93 TVIRGTILISLSPLD 107
>ref|XP_673172.1| u6 snRNA-associated Sm-like protein [Plasmodium berghei strain
ANKA]
emb|CAH96266.1| u6 snRNA-associated Sm-like protein, putative [Plasmodium berghei]
Length = 108
Score = 52.0 bits (123), Expect = 2e-05
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV--NGND-------KTDIGM 305
D+KK+M++K+++K + R V+G L G D NLV+D T E + ND +IG+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEFIRDPNDSYVITEKSRNIGL 79
Query: 304 VVIRGNSVVMI 272
+V RG SV +I
Sbjct: 80 IVARGTSVALI 90
>emb|CAG90229.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_461772.1| hypothetical protein DEHA0G05830g [Debaryomyces hansenii CBS767]
Length = 90
Score = 51.6 bits (122), Expect = 2e-05
Identities = 20/47 (42%), Positives = 38/47 (80%), Gaps = 2/47 (4%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGND--KTDIGMVVIRGNSVVMIEALE 260
G +RGFD+FMN+V+D+ +EVN ND K ++G ++++G+++ +I +L+
Sbjct: 43 GKIRGFDEFMNVVIDDAMEVNTNDGSKEELGRILLKGDNITLISSLD 89
>ref|NP_850580.1| unknown protein [Arabidopsis thaliana]
ref|NP_566476.1| unknown protein [Arabidopsis thaliana]
gb|AAM61336.1| Sm protein, putative [Arabidopsis thaliana]
gb|AAO42334.1| putative Sm protein [Arabidopsis thaliana]
gb|AAO22620.1| putative Sm protein [Arabidopsis thaliana]
Length = 128
Score = 51.6 bits (122), Expect = 2e-05
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L Y+D+KL + + R ++GTLR FDQF N V++ E + G DI G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 286 SVVMIEALE 260
+VV+I L+
Sbjct: 75 NVVLIGELD 83
>gb|EAM93838.1| Small nuclear ribonucleoprotein (Sm protein) [Ferroplasma
acidarmanus Fer1]
ref|ZP_00609653.1| Small nuclear ribonucleoprotein (Sm protein) [Ferroplasma
acidarmanus Fer1]
Length = 84
Score = 51.6 bits (122), Expect = 2e-05
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = -3
Query: 487 VTMSRSGQPPD----LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGND 323
V +RSG P LK ++K + I + NR+ G L G+D +MNLV+ N E +N +
Sbjct: 2 VNNNRSGYVPKPMETLKNSLEKNIMIDVKGNRMYSGILEGYDIYMNLVLKNATETINNEN 61
Query: 322 KTDIGMVVIRGNSVVMI 272
K M+++RG++++ +
Sbjct: 62 KGTFSMMLLRGDNIIFV 78
>gb|AAS53424.1| AFR053Cp [Ashbya gossypii ATCC 10895]
ref|NP_985600.1| AFR053Cp [Eremothecium gossypii]
Length = 117
Score = 51.2 bits (121), Expect = 3e-05
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK---------TDIGM 305
DL KY D ++++K+ R+V G L+G+DQ MNLV+D TVE +++ +G+
Sbjct: 32 DLAKYQDTQVRVKLMGGRLVTGVLKGYDQLMNLVLDETVEYLRDEEDASVVTQCTRPLGL 91
Query: 304 VVIRG 290
VIRG
Sbjct: 92 KVIRG 96
>dbj|BAB65770.1| 79aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus
tokodaii str. 7]
ref|NP_376661.1| hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii
str. 7]
Length = 79
Score = 50.8 bits (120), Expect = 3e-05
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT-DIGMVVIRGNSVV 278
L + + + +K+ +++V GTL+ +D MNLV++N+ EV + T +G ++IRG++V+
Sbjct: 13 LAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKVGTIIIRGDNVI 72
Query: 277 MIEALEP 257
++ + P
Sbjct: 73 LVSPMSP 79
>gb|AAP80816.1| U6 snRNA-associated Sm-like protein LSm7 [Griffithsia japonica]
Length = 110
Score = 50.4 bits (119), Expect = 4e-05
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----------VNGNDKTDIG 308
DL KY DK + +++ R V G L+G+D +NLV+D VE ++G ++ +G
Sbjct: 21 DLSKYSDKDVIVRLAGGRQVRGVLKGWDPLLNLVLDEVVEQLRDVDDSYRLSGKER-KLG 79
Query: 307 MVVIRGNSVVMIEALEPV 254
+VV+RG SV+ + ++ V
Sbjct: 80 LVVVRGTSVMTVSPVDGV 97
>ref|XP_962388.1| hypothetical protein [Neurospora crassa N150]
ref|XP_326209.1| hypothetical protein [Neurospora crassa]
gb|EAA33152.1| hypothetical protein [Neurospora crassa]
Length = 96
Score = 50.4 bits (119), Expect = 4e-05
Identities = 22/52 (42%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
Frame = -3
Query: 400 VIGTLRGFDQFMNLVVDNTVEVNGNDKT-------DIGMVVIRGNSVVMIEA 266
+IGT+RGFD+FMNLV+DN +EV KT ++G ++++G++V +I++
Sbjct: 42 IIGTIRGFDEFMNLVIDNAIEVKLVSKTNETEERRELGQILLKGDNVSLIQS 93
>ref|XP_762856.1| U6 snRNA-associated protein [Theileria parva strain Muguga]
gb|EAN30573.1| U6 snRNA-associated protein, putative [Theileria parva]
Length = 104
Score = 49.3 bits (116), Expect = 1e-04
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 9/75 (12%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
+L K+++K++ +K + R V G LRG D NLV+D+TVE + +K ++G+
Sbjct: 16 NLNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTGEKRNLGL 75
Query: 304 VVIRGNSVVMIEALE 260
+V RG SV ++ +E
Sbjct: 76 LVARGTSVTVVYPVE 90
>gb|AAY54654.1| IP04948p [Drosophila melanogaster]
Length = 137
Score = 48.9 bits (115), Expect = 1e-04
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L + +DKKL + + R +IG LR DQF NLV+ T+E GN+ DI G+ +IRG
Sbjct: 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIRGE 72
Query: 286 SVVMIEALE 260
+VV++ ++
Sbjct: 73 NVVLLGEID 81
>ref|NP_611559.1| CG4279-PA [Drosophila melanogaster]
gb|AAY54665.1| IP04848p [Drosophila melanogaster]
gb|AAF46688.1| CG4279-PA [Drosophila melanogaster]
Length = 137
Score = 48.9 bits (115), Expect = 1e-04
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L + +DKKL + + R +IG LR DQF NLV+ T+E GN+ DI G+ +IRG
Sbjct: 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIRGE 72
Query: 286 SVVMIEALE 260
+VV++ ++
Sbjct: 73 NVVLLGEID 81
>emb|CAB59808.1| SPBC11G11.06c [Schizosaccharomyces pombe]
ref|NP_595724.1| hypothetical protein SPBC11G11.06c [Schizosaccharomyces pombe
972h-]
Length = 84
Score = 48.9 bits (115), Expect = 1e-04
Identities = 18/45 (40%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNG-NDKTDIGMVVIRGNSVVMIEAL 263
G +RGFD+FMN+V+D+ V+V+ N+K ++G ++++G+++ +I+A+
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>emb|CAI75598.1| small nuclear ribonucleoprotein (E), putative [Theileria annulata]
ref|XP_763406.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
ref|XP_955074.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gb|EAN31123.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 91
Score = 48.9 bits (115), Expect = 1e-04
Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Frame = -3
Query: 409 NRVVIGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVIRGNSVVMIEA 266
N + GT+RGFD++MN+V+DN EV+ N K D+G ++++G+ + +I A
Sbjct: 38 NTKIEGTIRGFDEYMNMVLDNATEVHVKKNVKKDVGRILLKGDCMTLISA 87
>ref|NP_564072.1| unknown protein [Arabidopsis thaliana]
gb|AAM16180.1| At1g19120/F14D16_26 [Arabidopsis thaliana]
gb|AAL06482.1| At1g19120/F14D16_26 [Arabidopsis thaliana]
Length = 128
Score = 48.5 bits (114), Expect = 2e-04
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L Y+DKKL + + R ++G LR FDQF N V++ E + G+ DI G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 286 SVVMIEALE 260
+VV+I L+
Sbjct: 75 NVVLIGELD 83
>gb|AAM61736.1| unknown [Arabidopsis thaliana]
Length = 128
Score = 48.5 bits (114), Expect = 2e-04
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L Y+DKKL + + R ++G LR FDQF N V++ E + G+ DI G+ +IRG
Sbjct: 15 LAPYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 286 SVVMIEALE 260
+VV+I L+
Sbjct: 75 NVVLIGELD 83
>ref|XP_748912.1| small nuclear ribonucleoprotein SmE [Aspergillus fumigatus Af293]
gb|EAL86874.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus Af293]
Length = 95
Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 6/51 (11%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGNDKTD------IGMVVIRGNSVVMIEALE 260
G +RGFD+FMNLV+D+ VEV KTD +G ++++G++V +I+A++
Sbjct: 45 GKIRGFDEFMNLVIDDAVEVKMATKTDEEKRRPLGQILLKGDNVSLIQAVQ 95
>emb|CAE61561.1| Hypothetical protein CBG05470 [Caenorhabditis briggsae]
Length = 98
Score = 48.5 bits (114), Expect = 2e-04
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNT-----VEVNGNDKTDIGMVVIRG 290
L+ YM++ + + RV++G L+GFDQ +NLV+++ E +G T +G+ +IRG
Sbjct: 5 LESYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERCYSETDGVLITPLGLYIIRG 64
Query: 289 NSVVMIEALE 260
+V +I ++
Sbjct: 65 ENVAIIGEID 74
>ref|XP_818740.1| small nuclear ribonucleoprotein Sm-G [Trypanosoma cruzi strain CL
Brener]
gb|EAN96889.1| small nuclear ribonucleoprotein Sm-G, putative [Trypanosoma cruzi]
Length = 82
Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Frame = -3
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN-------DKTDIGM 305
PP+L +M+K++ +K+ R + G LRG D F+ +V+ + + + +K +G
Sbjct: 7 PPNLNHFMEKRVVVKLQGGRSISGELRGVDNFLGVVLFDATDERPSFNNEENMEKVALGT 66
Query: 304 VVIRGNSVVMIEALE 260
VIRG ++V I LE
Sbjct: 67 TVIRGTAIVEIVGLE 81
>gb|EAL26508.1| GA18077-PA [Drosophila pseudoobscura]
Length = 137
Score = 48.1 bits (113), Expect = 2e-04
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L + +DKKL + + R +IG LR DQF NLV+ T+E GN DI G+ +IRG
Sbjct: 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNQYGDIPRGVFIIRGE 72
Query: 286 SVVMIEALE 260
+VV++ ++
Sbjct: 73 NVVLLGEID 81
>gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
Length = 82
Score = 48.1 bits (113), Expect = 2e-04
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
LK ++K + + + NR GTL G+D +MN+V+ N E +NG +K +++RG++++
Sbjct: 15 LKNSLEKNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSETINGENKGVFEKMLVRGDNII 74
Query: 277 MI 272
+
Sbjct: 75 FV 76
>gb|AAL00875.1| Lsm sm-like protein protein 8 [Caenorhabditis elegans]
ref|NP_500964.1| LSM Sm-like protein family member (lsm-8) [Caenorhabditis elegans]
Length = 98
Score = 47.8 bits (112), Expect = 3e-04
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNT-----VEVNGNDKTDIGMVVIRG 290
L YM++ + + RV++G L+GFDQ +NLV+++ E G T +G+ +IRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 289 NSVVMIEALE 260
+V +I ++
Sbjct: 65 ENVAIIGEID 74
>gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
Length = 79
Score = 47.4 bits (111), Expect = 4e-04
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVV 278
L + + + +K+ ++V GTL+ +D MNLV++N+ E+ N +G +VIRG++V+
Sbjct: 15 LAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKVGTIVIRGDNVI 74
Query: 277 MI 272
++
Sbjct: 75 LV 76
>gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
ref|NP_613507.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 47.0 bits (110), Expect = 5e-04
Identities = 21/65 (32%), Positives = 41/65 (63%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L+ ++D + +++ + + G L FD +NLV+D+ VE++ + + +G V+IRG+SV +
Sbjct: 7 LRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSEVRLGRVLIRGDSVTL 66
Query: 274 IEALE 260
I E
Sbjct: 67 ISPAE 71
>ref|NP_598700.1| U6 snRNA-associated Sm-like protein LSm8 [Mus musculus]
gb|AAH22440.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gb|AAH19458.1| U6 snRNA-associated Sm-like protein LSm8 [Mus musculus]
ref|NP_057284.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
ref|XP_532529.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8
isoform 1 [Canis familiaris]
emb|CAH90464.1| hypothetical protein [Pongo pygmaeus]
gb|AAI02500.1| LSM8 homolog, U6 small nuclear RNA associated [Bos taurus]
dbj|BAE39723.1| unnamed protein product [Mus musculus]
dbj|BAC40488.1| unnamed protein product [Mus musculus]
ref|XP_216102.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8
[Rattus norvegicus]
gb|EAL24351.1| LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gb|AAD15542.1| similar to Schizosaccharomyces pombe splicing factor; similar to
PID:3395591 [Homo sapiens]
gb|AAH02742.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
gb|AAD56232.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8
sp|O95777|LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8
ref|NP_001029912.1| LSM8 homolog, U6 small nuclear RNA associated [Bos taurus]
Length = 96
Score = 47.0 bits (110), Expect = 5e-04
Identities = 20/70 (28%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y+++ + + + R+++GTL+GFDQ +NL++D + E G ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 289 NSVVMIEALE 260
++V +I ++
Sbjct: 65 DNVAVIGEID 74
>ref|XP_694374.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8
[Danio rerio]
Length = 96
Score = 47.0 bits (110), Expect = 5e-04
Identities = 21/70 (30%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y+ + + I + R+++GTL+GFDQ +NL++D + E G ++ +G+ ++RG
Sbjct: 5 LESYIHRTVAIVTSDGRMIVGTLKGFDQAINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 289 NSVVMIEALE 260
++V +I ++
Sbjct: 65 DNVAVIGEID 74
>gb|EAA00900.2| ENSANGP00000012242 [Anopheles gambiae str. PEST]
ref|XP_321407.2| ENSANGP00000012242 [Anopheles gambiae str. PEST]
Length = 134
Score = 47.0 bits (110), Expect = 5e-04
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = -3
Query: 439 DKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVMI 272
++KL + ++ R +IG LR DQF NLV+ T+E GN+ DI G+V+IRG +VV++
Sbjct: 16 EEKLMVLLHDGRTLIGYLRSVDQFANLVLHRTIERIHVGNEYGDIQRGVVIIRGENVVLL 75
Query: 271 EALE 260
++
Sbjct: 76 GEID 79
>ref|XP_416009.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8
[Gallus gallus]
Length = 228
Score = 47.0 bits (110), Expect = 5e-04
Identities = 20/70 (28%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y+++ + + + R+++GTL+GFDQ +NL++D + E G ++ +G+ ++RG
Sbjct: 137 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 196
Query: 289 NSVVMIEALE 260
++V +I ++
Sbjct: 197 DNVAVIGEID 206
>emb|CAI75948.1| u6 snrna-associated sm-like protein, putative [Theileria annulata]
ref|XP_955424.1| U6 snRNA-associated sm-like protein [Theileria annulata strain
Ankara]
Length = 87
Score = 46.6 bits (109), Expect = 6e-04
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGM 305
+L K+++K++ +K + R V G LRG D NLV+D+TVE + +K ++G+
Sbjct: 16 NLNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEFLKDSSDSSKLTGEKRNLGL 75
Query: 304 VVIRGNSV 281
+V RG SV
Sbjct: 76 LVARGTSV 83
>gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
ref|NP_342263.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 46.6 bits (109), Expect = 6e-04
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK-TDIGMVVIRGNSVV 278
L + ++ + +K+ N+ V G LR +DQ MNLV+ ++ E+ + +G +VIRG++V+
Sbjct: 12 LAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVI 71
Query: 277 MIEALE 260
+I L+
Sbjct: 72 LISPLQ 77
>pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 46.6 bits (109), Expect = 6e-04
Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK-TDIGMVVIRGNSVV 278
L + ++ + +K+ N+ V G LR +DQ MNLV+ ++ E+ + +G +VIRG++V+
Sbjct: 14 LAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVI 73
Query: 277 MIEALE 260
+I L+
Sbjct: 74 LISPLQ 79
>emb|CAG87964.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_459728.1| hypothetical protein DEHA0E10222 [Debaryomyces hansenii CBS767]
Length = 78
Score = 46.2 bits (108), Expect = 8e-04
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE 338
DL Y DK++++K R VIG L+GFDQ MNLV+++ E
Sbjct: 34 DLNNYKDKQIRVKFIGGRQVIGVLKGFDQLMNLVLEDVKE 73
>ref|XP_917892.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G
[Mus musculus]
Length = 39
Score = 46.2 bits (108), Expect = 8e-04
Identities = 23/39 (58%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = -3
Query: 367 MNLVVDNTVEV-NGNDKTDIGMVVIRGNSVVMIEALEPV 254
MNLV+D VE+ + +IGMVVIRGNS++M+EALE V
Sbjct: 1 MNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 39
>gb|AAH68881.1| MGC82379 protein [Xenopus laevis]
Length = 96
Score = 45.8 bits (107), Expect = 0.001
Identities = 20/70 (28%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y+++ + + R+++GTL+GFDQ +NL++D + E G ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 289 NSVVMIEALE 260
++V +I ++
Sbjct: 65 DNVAVIGEID 74
>ref|XP_454633.1| unnamed protein product [Kluyveromyces lactis]
emb|CAG99720.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 179
Score = 45.8 bits (107), Expect = 0.001
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---VNGNDK---TDIGMVVIRGNSV 281
+D+K+ + + R+ G LR FDQ+ NL++ +TVE + G +K D G+ +IRG +V
Sbjct: 57 VDRKIFVLLRDGRMFFGVLRTFDQYANLILQHTVERIYIEGENKYGECDRGVFMIRGENV 116
Query: 280 VMI 272
VM+
Sbjct: 117 VML 119
>ref|XP_641509.1| hypothetical protein DDB0206318 [Dictyostelium discoideum]
gb|EAL67532.1| hypothetical protein DDB0206318 [Dictyostelium discoideum]
Length = 129
Score = 45.8 bits (107), Expect = 0.001
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTD--IGMVVIRGNSVVM 275
+DKKL + + R IG +R FDQF N+V+ +T+E G+ +D +G+ IRG++VV+
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 274 IEALEP 257
+ ++P
Sbjct: 69 LGEIDP 74
>ref|XP_755512.1| small nuclear ribonucleoprotein LSM1 [Aspergillus fumigatus Af293]
gb|EAL93474.1| small nuclear ribonucleoprotein (LSM1), putative [Aspergillus
fumigatus Af293]
Length = 177
Score = 45.4 bits (106), Expect = 0.001
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Frame = -3
Query: 439 DKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVMI 272
DKKL + + R +IG LR +DQF NLV+ +T+E GN DI G+ ++RG +V+++
Sbjct: 58 DKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRGENVLLL 117
Query: 271 EALE 260
++
Sbjct: 118 GEID 121
>ref|XP_759115.1| hypothetical protein UM02968.1 [Ustilago maydis 521]
gb|EAK84140.1| hypothetical protein UM02968.1 [Ustilago maydis 521]
Length = 148
Score = 45.4 bits (106), Expect = 0.001
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK+ + + + +IG LR +DQF NLV+ +TVE GN D+ G+ ++RG +VV+
Sbjct: 22 VDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFVGNRYGDVARGIFLVRGENVVL 81
Query: 274 IEALE 260
+ ++
Sbjct: 82 MGEID 86
>emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
ref|XP_953972.1| hypothetical protein TA05750 [Theileria annulata strain Ankara]
Length = 90
Score = 45.4 bits (106), Expect = 0.001
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----VNGNDKTDIGMVVIRGN 287
+ K + K+ I M ++ + GTLRGFD +MN+V+++ V+ +G T++ ++ GN
Sbjct: 16 IDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGN 75
Query: 286 SVVMI 272
+V M+
Sbjct: 76 NVAML 80
>ref|XP_624639.1| PREDICTED: similar to CG4279-PA [Apis mellifera]
Length = 134
Score = 45.4 bits (106), Expect = 0.001
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L + +DKKL + + R +IG LR DQF N+V+ T+E G + DI G+ ++RG
Sbjct: 10 LLEELDKKLMVLLRDGRTLIGYLRSVDQFANIVLHRTIERIHVGKEYGDIPRGIFIVRGE 69
Query: 286 SVVMIEALE 260
+VV++ ++
Sbjct: 70 NVVLLGEID 78
>gb|AAZ72465.1| small nuclear riboprotein-like protein [Methanosarcina barkeri str.
fusaro]
ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri str.
fusaro]
Length = 74
Score = 45.1 bits (105), Expect = 0.002
Identities = 22/67 (32%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNAN-RVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSV 281
++K + ++Q++M + ++ GTL+ D +MNL + +T+E V G +G VV+RGN++
Sbjct: 7 VQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNI 66
Query: 280 VMIEALE 260
++I +E
Sbjct: 67 ILITPIE 73
>ref|XP_797604.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Strongylocentrotus purpuratus]
Length = 88
Score = 45.1 bits (105), Expect = 0.002
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----VNGNDKTDIGMVVIRGNSV 281
K + ++ I M ++ ++GTL GFD F+N+V+++ VE G T + +++ GN++
Sbjct: 17 KCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVVEFETTAEGRRVTKLDQILLNGNNI 76
Query: 280 VMI 272
M+
Sbjct: 77 TML 79
>ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 45.1 bits (105), Expect = 0.002
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGN 287
+ K + K+ I M ++ + GTLRGFD +MN+V+++ V+ +G T++ ++ GN
Sbjct: 16 IDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPDGVKTTELNDALVNGN 75
Query: 286 SVVMI 272
+V M+
Sbjct: 76 NVAML 80
>gb|AAV59381.1| unknown protein [Oryza sativa (japonica cultivar-group)]
ref|XP_476030.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 99
Score = 44.7 bits (104), Expect = 0.002
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVI 296
P L+ +D+ + + N R ++GTLRGFDQ N+++D + E G + +G+ +I
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVLGLYII 65
Query: 295 RGNSVVMI 272
RG+++ ++
Sbjct: 66 RGDNISVV 73
>emb|CAJ08627.1| small nuclear ribonucleoprotein, putative [Leishmania major]
Length = 81
Score = 44.7 bits (104), Expect = 0.002
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE------VNGNDKTDIGMVV 299
P+L +M+K++ +K+ R + G LRG D+ M++V+ + ++ V+ + +G V
Sbjct: 8 PNLNHFMEKRIVVKIQGGRSISGVLRGVDEHMSIVLHDAMDETRNAAVSEEARLALGTTV 67
Query: 298 IRGNSVVMI 272
IRG+++V I
Sbjct: 68 IRGSAIVEI 76
>gb|AAH45532.1| LSM8 protein [Homo sapiens]
Length = 67
Score = 44.7 bits (104), Expect = 0.002
Identities = 19/63 (30%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y+++ + + + R+++GTL+GFDQ +NL++D + E G ++ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 289 NSV 281
++V
Sbjct: 65 DNV 67
>gb|AAW41037.1| u6 snRNA-associated sm-like protein lsm8, putative [Cryptococcus
neoformans var. neoformans JEC21]
ref|XP_566856.1| u6 snRNA-associated sm-like protein lsm8 [Cryptococcus neoformans
var. neoformans JEC21]
gb|EAL23178.1| hypothetical protein CNBA5220 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 95
Score = 44.7 bits (104), Expect = 0.002
Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
++ Y+D +Q+ + RV++G L+G+D NL++ ++VE G + +G+ VI+G
Sbjct: 4 IESYVDHTVQVILQDGRVIVGKLKGYDPRTNLILSDSVEREFSMDQGVEMIPLGLYVIKG 63
Query: 289 NSVVMIEALE 260
++V ++ L+
Sbjct: 64 DNVAVVAELD 73
>ref|NP_634407.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 44.7 bits (104), Expect = 0.002
Identities = 22/67 (32%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNAN-RVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSV 281
++K + ++Q++M + ++ GTL+ D +MNL + +T+E V G +G VV+RGN++
Sbjct: 7 VQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVKGEKVRSLGSVVLRGNNI 66
Query: 280 VMIEALE 260
++I +E
Sbjct: 67 ILITPVE 73
>emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein
ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM 1728]
Length = 83
Score = 44.7 bits (104), Expect = 0.002
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
LK + + + I + NR G L G+D +MN+V+ N E +NG +K V++RG++V+
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVI 73
Query: 277 MI 272
+
Sbjct: 74 FV 75
>ref|ZP_01153713.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gb|EAR49286.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
Length = 72
Score = 44.7 bits (104), Expect = 0.002
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L + ++ + +++ R G L+G+D MNLV++NT E+ IG V++RG++VV
Sbjct: 10 LNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEIAEGTARKIGAVIVRGDNVVY 69
Query: 274 I 272
I
Sbjct: 70 I 70
>ref|NP_595520.1| small nuclear ribonucleoprotein [Schizosaccharomyces pombe 972h-]
emb|CAB09117.1| SPBC3D6.08c [Schizosaccharomyces pombe]
sp|P87173|YB18_SCHPO Hypothetical protein C3D6.08c in chromosome II
pir||T40368 hypothetical protein SPBC3D6.08c - fission yeast
(Schizosaccharomyces pombe)
Length = 140
Score = 44.7 bits (104), Expect = 0.002
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGND----KTDIGMVVIRGN 287
L Y+D+K+ + + + +IG LR FDQF NL++ T+E D D G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 286 SVVMIEALE 260
+VV++ L+
Sbjct: 76 NVVLLGELD 84
>ref|XP_472650.1| OSJNBa0027P08.15 [Oryza sativa (japonica cultivar-group)]
emb|CAD40963.2| OSJNBa0027P08.15 [Oryza sativa (japonica cultivar-group)]
Length = 136
Score = 44.7 bits (104), Expect = 0.002
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 287
L ++DKKL + + R ++GTL FDQF N+V+ E + G D+ G+ VIRG
Sbjct: 16 LAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGE 75
Query: 286 SVVMIEAL 263
+VV+I L
Sbjct: 76 NVVLIGEL 83
>dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 44.3 bits (103), Expect = 0.003
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
LK + + + I + NR G L G+D +MN+V+ N E +NG +K +++RG++V+
Sbjct: 18 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRGDNVI 77
Query: 277 MI 272
+
Sbjct: 78 FV 79
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein
ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 83
Score = 44.3 bits (103), Expect = 0.003
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
LK + + + I + NR G L G+D +MN+V+ N E +NG +K +++RG++V+
Sbjct: 14 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGVFDRILVRGDNVI 73
Query: 277 MI 272
+
Sbjct: 74 FV 75
>ref|NP_704263.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
falciparum 3D7]
emb|CAD51082.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
falciparum 3D7]
Length = 94
Score = 43.9 bits (102), Expect = 0.004
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = -3
Query: 457 DLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---VNGNDKTDIGMVVIRGN 287
+++ Y++ ++ + N +R+ G L+GFDQ N+++ N E +K +G+ +IRG+
Sbjct: 5 NIESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKESMEKISLGVYIIRGD 64
Query: 286 SVVMIEALE 260
+V +I ++
Sbjct: 65 TVTLIGEID 73
>ref|XP_628515.1| hypothetical protein cgd7_3520 [Cryptosporidium parvum Iowa II]
gb|EAK90634.1| hypothetical protein cgd7_3520 [Cryptosporidium parvum]
Length = 73
Score = 43.9 bits (102), Expect = 0.004
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE 338
L K+ +K++++K+ R VIG LRGFD NLV+D TVE
Sbjct: 24 LNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLDETVE 62
>dbj|BAB02972.1| unnamed protein product [Arabidopsis thaliana]
Length = 118
Score = 43.9 bits (102), Expect = 0.004
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = -3
Query: 433 KLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVMIEA 266
KL + + R ++GTLR FDQF N V++ E + G DI G+ VIRG +VV+I
Sbjct: 12 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGE 71
Query: 265 LE 260
L+
Sbjct: 72 LD 73
>ref|XP_502273.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG80459.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 85
Score = 43.9 bits (102), Expect = 0.004
Identities = 15/41 (36%), Positives = 33/41 (80%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMI 272
GTL GFD+FMN+V+++ +++ G+ + IG ++++G+++ +I
Sbjct: 41 GTLVGFDEFMNVVLEDAIQICGDKERKIGKIMLKGDNITLI 81
>ref|XP_382922.1| hypothetical protein FG02746.1 [Gibberella zeae PH-1]
gb|EAA69470.1| hypothetical protein FG02746.1 [Gibberella zeae PH-1]
Length = 96
Score = 43.9 bits (102), Expect = 0.004
Identities = 20/50 (40%), Positives = 35/50 (70%), Gaps = 7/50 (14%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGNDKTD-------IGMVVIRGNSVVMIEA 266
G +RGFD+FMNLV+D+ VEV KT+ +G ++++G++V +I++
Sbjct: 44 GKIRGFDEFMNLVIDDAVEVKQITKTNDKESRRPLGQILLKGDNVSLIQS 93
>ref|XP_624537.1| PREDICTED: similar to CG2021-PA [Apis mellifera]
Length = 96
Score = 43.9 bits (102), Expect = 0.004
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y++ + I + R IGTL+GFDQ +N+++D + E G ++ +G+ +IRG
Sbjct: 5 LESYVNHTVSIITSDGRNFIGTLKGFDQTINIILDESHERVYSTTQGVEQVVLGLHIIRG 64
Query: 289 NSVVMIEALE 260
++V ++ L+
Sbjct: 65 DNVAIVGELD 74
>gb|AAW46642.1| RNA cap binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_568159.1| RNA cap binding protein [Cryptococcus neoformans var. neoformans
JEC21]
gb|EAL18788.1| hypothetical protein CNBI0490 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 135
Score = 43.9 bits (102), Expect = 0.004
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Frame = -3
Query: 487 VTMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGND 323
+ + SG DL +DKK+ + + R +IG R +DQF N ++++ VE + D
Sbjct: 5 IPFTTSGSLVDL---VDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVERLHYKLEYAD 61
Query: 322 KTDIGMVVIRGNSVVMIEALEPVA 251
K DIG++++RG +VV + ++ +A
Sbjct: 62 K-DIGVLLVRGENVVALGEIDLIA 84
>emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
Length = 155
Score = 43.9 bits (102), Expect = 0.004
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Frame = -3
Query: 472 SGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN---GNDKT----- 317
+G+ ++ ++ +++ + NR +GTL FD++MNLV+ + E G DK
Sbjct: 2 AGKNTRMQHWLQYNVRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRMTLGKDKNRTEVK 61
Query: 316 -DIGMVVIRGNSVVMIEALEPV 254
+G V++RG ++V A PV
Sbjct: 62 RTLGFVLLRGENIVSFTAKSPV 83
>emb|CAG85236.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_457238.1| hypothetical protein DEHA0B06402g [Debaryomyces hansenii CBS767]
Length = 172
Score = 43.5 bits (101), Expect = 0.005
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 14/75 (18%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE---VNGNDKTD-----------IGM 305
+D+K+ + + R + G LR FDQF NLV+ +T+E ++ +D+TD G+
Sbjct: 42 VDRKIFVLLRDGRNLFGILRTFDQFANLVLQDTIERIYLDSDDETDDSRPKKFGEAYRGV 101
Query: 304 VVIRGNSVVMIEALE 260
++RG +VVM+ L+
Sbjct: 102 FMVRGENVVMMGELD 116
>gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 43.1 bits (100), Expect = 0.007
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M +++ ++GTL GFD F+N+V+++ E G T + +++ GN++
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 280 VMI 272
M+
Sbjct: 80 TML 82
>gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A]
ref|NP_616348.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 74
Score = 43.1 bits (100), Expect = 0.007
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNAN-RVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSV 281
++K + +++++M + ++ GTL+ D +MNL + +T+E V G +G VV+RGN++
Sbjct: 7 VQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNNI 66
Query: 280 VMIEALE 260
++I +E
Sbjct: 67 ILITPVE 73
>ref|XP_519030.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Pan troglodytes]
ref|NP_036454.1| U6 snRNA-associated Sm-like protein 5 [Homo sapiens]
gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated [Mus musculus]
gb|AAH05938.1| U6 snRNA-associated Sm-like protein 5 [Homo sapiens]
ref|XP_871954.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Bos taurus]
ref|XP_854477.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Canis familiaris]
emb|CAB45868.1| Lsm5 protein [Homo sapiens]
emb|CAH92788.1| hypothetical protein [Pongo pygmaeus]
gb|AAI05405.1| Unknown (protein for MGC:128153) [Bos taurus]
ref|NP_079796.1| LSM5 homolog, U6 small nuclear RNA associated [Mus musculus]
dbj|BAB26394.1| unnamed protein product [Mus musculus]
dbj|BAB27475.1| unnamed protein product [Mus musculus]
ref|XP_224630.2| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Rattus norvegicus]
gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated [Mus musculus]
gb|AAD56229.1| U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5
sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5
Length = 91
Score = 43.1 bits (100), Expect = 0.007
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M +++ ++GTL GFD F+N+V+++ E G T + +++ GN++
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 280 VMI 272
M+
Sbjct: 80 TML 82
>ref|NP_506870.1| LSM Sm-like protein family member (lsm-5) [Caenorhabditis elegans]
emb|CAB03013.1| Hypothetical protein F28F8.3 [Caenorhabditis elegans]
Length = 91
Score = 43.1 bits (100), Expect = 0.007
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----VNGNDKTDIGMVVIRGN 287
+ K + K+ + M ++ ++GTL GFD ++N+V+++ VE +G T + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 286 SVVMI 272
+ M+
Sbjct: 78 HITML 82
>ref|ZP_01153344.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gb|EAR48917.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
Length = 74
Score = 43.1 bits (100), Expect = 0.007
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -3
Query: 433 KLQIKMNANR--VVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVVMIEAL 263
K+Q++M ++ V+ G L D+++NL + TVE VNG +G V++RGN++++I
Sbjct: 14 KIQVEMKGSQRHVLEGILNSVDEYLNLHLLETVEIVNGERTRSLGSVILRGNNIILISPA 73
Query: 262 E 260
E
Sbjct: 74 E 74
>ref|XP_418849.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Gallus gallus]
Length = 163
Score = 43.1 bits (100), Expect = 0.007
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M +++ ++GTL GFD F+N+V+++ E G T + +++ GN++
Sbjct: 94 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 153
Query: 280 VMI 272
M+
Sbjct: 154 TML 156
>emb|CAA20133.1| SPCC1840.10 [Schizosaccharomyces pombe]
ref|NP_588509.1| hypothetical protein SPCC1840.10 [Schizosaccharomyces pombe 972h-]
sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8
Length = 94
Score = 42.7 bits (99), Expect = 0.009
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L +M++++Q+ N RVV+G+L+GFD NL++ ++ E + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 289 NSVVMI 272
+V M+
Sbjct: 63 ENVAMV 68
>emb|CAC27090.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
ref|NP_113521.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
Length = 78
Score = 42.7 bits (99), Expect = 0.009
Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = -3
Query: 403 VVIGTLRGFDQFMNLVVDNTVEVNGN-DKTDIGMVVIRGNSVVMIEAL 263
++ G L GFD+FMNLV++NT E + D+G V+I+G+S++ I ++
Sbjct: 29 ILEGNLIGFDEFMNLVIENTTEKKDSLIVRDLGYVLIKGDSILTISSI 76
>emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 42.7 bits (99), Expect = 0.009
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M ++ ++GTL GFD F+N+V+++ E G T + +++ GN++
Sbjct: 17 KCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEVTPEGRRITKLDQILLNGNNI 76
Query: 280 VMI 272
M+
Sbjct: 77 TML 79
>emb|CAE71635.1| Hypothetical protein CBG18602 [Caenorhabditis briggsae]
Length = 91
Score = 42.7 bits (99), Expect = 0.009
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----VNGNDKTDIGMVVIRGN 287
+ K + K+ + M ++ ++GTL GFD ++N+V+++ VE G T + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKRMTKLDTILLNGN 77
Query: 286 SVVMI 272
+ M+
Sbjct: 78 HITML 82
>ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 42.7 bits (99), Expect = 0.009
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGND----KTDIGMVV 299
++KY++ ++++ + +RV++G L FD+ MNLV+ + E G + K +G+++
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 298 IRGNSVVMIEALEP 257
+RG ++V A P
Sbjct: 61 LRGENIVTFVAEAP 74
>ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 42.4 bits (98), Expect = 0.012
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Frame = -3
Query: 469 GQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVN---GNDKT------ 317
G+ ++ ++ +++ + NR +GTL +D++MNLV+ + E G DK
Sbjct: 3 GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKR 62
Query: 316 DIGMVVIRGNSVVMIEALEPV 254
+G V++RG ++V A PV
Sbjct: 63 TLGFVLLRGENIVSFTAKSPV 83
>ref|NP_647660.1| CG2021-PA [Drosophila melanogaster]
gb|AAY85032.1| IP05684p [Drosophila melanogaster]
gb|AAF47567.1| CG2021-PA [Drosophila melanogaster]
Length = 95
Score = 42.4 bits (98), Expect = 0.012
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y++ + I R IGTL+GFDQ +N+++D E +G ++ +G+ +IRG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 289 NSVVMIEALEPVARSQ 242
+++ +I ++ S+
Sbjct: 64 DNIAVIGLIDETIDSR 79
>gb|EAA10979.2| ENSANGP00000011511 [Anopheles gambiae str. PEST]
ref|XP_316632.2| ENSANGP00000011511 [Anopheles gambiae str. PEST]
Length = 91
Score = 42.4 bits (98), Expect = 0.012
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M ++ ++GTL GFD F+N+++++ E G T + +++ GN++
Sbjct: 21 KCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTPEGRRITKLDQILLNGNNI 80
Query: 280 VMIEAL 263
M+ L
Sbjct: 81 TMVRGL 86
>emb|CAF89998.1| unnamed protein product [Tetraodon nigroviridis]
Length = 99
Score = 42.4 bits (98), Expect = 0.012
Identities = 21/73 (28%), Positives = 46/73 (63%), Gaps = 8/73 (10%)
Frame = -3
Query: 454 LKKYMDKK---LQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVV 299
L+ Y+++ + I + R+++GTL+GFDQ +NL++D + E G ++ +G+ +
Sbjct: 5 LESYINRDSGTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYI 64
Query: 298 IRGNSVVMIEALE 260
+RG++V +I ++
Sbjct: 65 VRGDNVAVIGEID 77
>ref|XP_900171.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 [Mus
musculus]
ref|XP_923327.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 [Mus
musculus]
Length = 80
Score = 42.4 bits (98), Expect = 0.012
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = -3
Query: 481 MSRSGQPPD--LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDI 311
MS QPP LK+ + + + +K+N+ G L D +MN+ ++ T E VNG K
Sbjct: 1 MSLRKQPPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY 60
Query: 310 GMVVIRGNSVVMI 272
G IRGN+V+ I
Sbjct: 61 GDAFIRGNNVLYI 73
>gb|AAS56633.1| YJL124C [Saccharomyces cerevisiae]
emb|CAA89419.1| unnamed protein product [Saccharomyces cerevisiae]
ref|NP_012411.1| Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p,
Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) involved in
degradation of cytoplasmic mRNAs; Lsm1p [Saccharomyces
cerevisiae]
sp|P47017|LSM1_YEAST Sm-like protein LSm1 (SPB8 protein)
Length = 172
Score = 42.4 bits (98), Expect = 0.012
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTV------EVNGNDKTDIGMVVIRGNSV 281
+D+K+ + + R++ G LR FDQ+ NL++ + V E N + D G+ +IRG +V
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 280 VMI 272
VM+
Sbjct: 110 VML 112
>ref|XP_645139.1| hypothetical protein DDB0206555 [Dictyostelium discoideum]
gb|EAL71312.1| hypothetical protein DDB0206555 [Dictyostelium discoideum]
Length = 274
Score = 42.0 bits (97), Expect = 0.016
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Frame = -3
Query: 472 SGQPPDLK--KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV---------NGN 326
SG P K +Y++ ++++ + RV++G FD+ MN+V+ + E +
Sbjct: 2 SGMPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDRE 61
Query: 325 DKTDIGMVVIRGNSVVMIEALEP 257
+K +GM++IRG +VV + P
Sbjct: 62 EKRTLGMILIRGETVVSMSVEAP 84
>emb|CAH73282.1| small nuclear ribonucleoprotein polypeptide E-like 1 [Homo sapiens]
ref|XP_942673.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Homo
sapiens]
ref|XP_034623.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like 1
[Homo sapiens]
Length = 92
Score = 42.0 bits (97), Expect = 0.016
Identities = 17/68 (25%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + QI++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 23 RYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>ref|YP_504465.1| Like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gb|ABD42746.1| Like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
Length = 80
Score = 42.0 bits (97), Expect = 0.016
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMI 272
I + R + G L+G+D MNLV+D E+ IG ++IRG++V+ I
Sbjct: 25 ISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQGQAQSIGTLIIRGDNVIYI 75
>emb|CAA93263.1| Hypothetical protein F40F8.9 [Caenorhabditis elegans]
ref|NP_496385.1| LSM Sm-like protein family member (lsm-1) [Caenorhabditis elegans]
Length = 125
Score = 42.0 bits (97), Expect = 0.016
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK----TDIGMVVIRGN 287
L + +DKKL + + R +IG LR DQF NL++++ VE +K T G ++IRG
Sbjct: 14 LFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGE 73
Query: 286 SV 281
+V
Sbjct: 74 NV 75
>gb|AAZ72371.1| putative snRNP Sm-like protein [Methanosarcina barkeri str. fusaro]
ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
fusaro]
Length = 72
Score = 42.0 bits (97), Expect = 0.016
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVV 278
L +D + +++ R G L+G+D MNLV+DN E+ G + G VVIRG++VV
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRGDNVV 68
Query: 277 MI 272
+
Sbjct: 69 YV 70
>emb|CAE59566.1| Hypothetical protein CBG02963 [Caenorhabditis briggsae]
Length = 125
Score = 42.0 bits (97), Expect = 0.016
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDK----TDIGMVVIRGN 287
L + +DKKL + + R +IG LR DQF NL++++ VE +K T G ++IRG
Sbjct: 14 LFEQLDKKLLVVLRDGRKLIGYLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGE 73
Query: 286 SV 281
+V
Sbjct: 74 NV 75
>gb|AAI10195.1| LSM1 protein [Bos taurus]
Length = 95
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>ref|XP_692400.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Danio rerio]
Length = 91
Score = 42.0 bits (97), Expect = 0.016
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M ++ ++GTL GFD F+N+V+++ E G T + +++ GN++
Sbjct: 20 KCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 280 VMI 272
M+
Sbjct: 80 TML 82
>ref|XP_532806.2| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1
(Small nuclear ribonuclear CaSm) (Cancer-associated
Sm-like) [Canis familiaris]
Length = 219
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 100 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 159
Query: 274 IEALE 260
+ ++
Sbjct: 160 LGEID 164
>ref|NP_001011191.1| LSM1 homolog, U6 small nuclear RNA associated [Xenopus tropicalis]
gb|AAH87559.1| LSM1 homolog, U6 small nuclear RNA associated [Xenopus tropicalis]
Length = 133
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>gb|AAX08788.1| Lsm1 protein [Bos taurus]
gb|AAX08755.1| Lsm1 protein [Bos taurus]
ref|NP_001017952.1| Lsm1 protein [Bos taurus]
gb|AAX08796.1| Lsm1 protein [Bos taurus]
Length = 133
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>ref|NP_055277.1| Lsm1 protein [Homo sapiens]
gb|AAH01767.1| Lsm1 protein [Homo sapiens]
emb|CAB45865.1| Lsm1 protein [Homo sapiens]
gb|AAB62189.1| CaSm [Homo sapiens]
sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear
CaSm) (Cancer-associated Sm-like)
Length = 133
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>gb|AAH21460.1| Lsm1 protein [Mus musculus]
dbj|BAC30891.1| unnamed protein product [Mus musculus]
ref|XP_357867.2| PREDICTED: LSM1 homolog, U6 small nuclear RNA associated isoform 1
[Mus musculus]
ref|XP_917027.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1
isoform 3 [Mus musculus]
sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1
Length = 133
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>gb|AAI06458.1| Unknown (protein for MGC:131170) [Xenopus laevis]
Length = 133
Score = 42.0 bits (97), Expect = 0.016
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>ref|NP_001003551.1| hypothetical protein LOC445157 [Danio rerio]
gb|AAH78334.1| Zgc:101136 [Danio rerio]
Length = 133
Score = 41.6 bits (96), Expect = 0.021
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVVL 73
Query: 274 I 272
+
Sbjct: 74 L 74
>ref|NP_648022.1| CG6610-PA [Drosophila melanogaster]
gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gb|AAF50703.1| CG6610-PA [Drosophila melanogaster]
Length = 91
Score = 41.6 bits (96), Expect = 0.021
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M ++ ++GTL GFD F+N+++D+ E +G T + +++ GN++
Sbjct: 21 KCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNI 80
Query: 280 VMI 272
M+
Sbjct: 81 TML 83
>gb|EAA00327.1| ENSANGP00000020162 [Anopheles gambiae str. PEST]
ref|XP_320680.1| ENSANGP00000020162 [Anopheles gambiae str. PEST]
Length = 95
Score = 41.6 bits (96), Expect = 0.021
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y++ + I R +GTL+GFDQ +N+++D + E G ++ +G+ +IRG
Sbjct: 4 LESYVNNTVSIITADGRNFVGTLKGFDQTVNVILDESHERVYSMTAGIEQVVLGLHIIRG 63
Query: 289 NSVVMIEALE 260
+++ +I L+
Sbjct: 64 DNIAIIGQLD 73
>gb|AAS50482.1| AAR116Wp [Ashbya gossypii ATCC 10895]
ref|NP_982658.1| AAR116Wp [Eremothecium gossypii]
Length = 97
Score = 41.6 bits (96), Expect = 0.021
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 9/54 (16%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGNDK---------TDIGMVVIRGNSVVMIEALE 260
G + GFD+FMN+VVD VEV ++K T +G ++++G+++ +I A E
Sbjct: 40 GRISGFDEFMNVVVDEAVEVPVDEKSGEEQVGRSTRLGRILLKGDNITLITAAE 93
>emb|CAF28746.1| hypothetical protein [uncultured crenarchaeote]
Length = 89
Score = 41.6 bits (96), Expect = 0.021
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-----NGND----------K 320
L++ + K + +K+ R V G ++GFD+ MN+V+ EV N ND +
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQE 70
Query: 319 TDIGMVVIRGNSVVMIEAL 263
T +G +IRG++V+ I L
Sbjct: 71 TQVGDALIRGDNVITIAVL 89
>emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabditis briggsae]
Length = 102
Score = 41.6 bits (96), Expect = 0.021
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Frame = -3
Query: 487 VTMSRSGQPPD--LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVV------------- 353
VT+S + + P L+ +D+K+ +KM +R + G LR FDQ +N+V+
Sbjct: 8 VTLSATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVD 67
Query: 352 -DNTVEVNGNDKTDIGMVVIRGNSVVMI 272
D E+ K + M+ +RG+SV+++
Sbjct: 68 EDTFEEIYRQSKRVVPMLFVRGDSVILV 95
>ref|XP_905537.1| PREDICTED: LSM1 homolog, U6 small nuclear RNA associated isoform 2
[Mus musculus]
ref|XP_927314.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1
isoform 4 [Mus musculus]
Length = 120
Score = 41.6 bits (96), Expect = 0.021
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV+ TVE G DI G+ V+RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 274 I 272
+
Sbjct: 74 L 74
>gb|EAL29577.1| GA19721-PA [Drosophila pseudoobscura]
Length = 91
Score = 41.6 bits (96), Expect = 0.021
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M ++ ++GTL GFD F+N+++D+ E +G T + +++ GN++
Sbjct: 21 KCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNI 80
Query: 280 VMI 272
M+
Sbjct: 81 TML 83
>ref|XP_391051.1| hypothetical protein FG10875.1 [Gibberella zeae PH-1]
gb|EAA74328.1| hypothetical protein FG10875.1 [Gibberella zeae PH-1]
Length = 169
Score = 41.6 bits (96), Expect = 0.021
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 15/75 (20%)
Frame = -3
Query: 439 DKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--------VNGNDK-----TDI--GM 305
DKKL + + R +IG LR +DQF NLV+ +T+E G+D+ DI G+
Sbjct: 39 DKKLMVALRDGRKLIGVLRSWDQFANLVLQSTIERIFAPSPDSAGSDRPTGLYADINHGI 98
Query: 304 VVIRGNSVVMIEALE 260
++RG +V+++ ++
Sbjct: 99 FLVRGENVLLLGEID 113
>ref|XP_234416.3| PREDICTED: similar to YLP motif containing protein 1 (Nuclear
protein ZAP3) (ZAP113) [Rattus norvegicus]
Length = 2469
Score = 41.2 bits (95), Expect = 0.027
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTD 314
+ SG + + + L K + ++GTL GFD F+N+V+++ E G T
Sbjct: 479 LGTSGSIDAVFSTISRSLNFKKKRKKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITK 538
Query: 313 IGMVVIRGNSVVMI 272
+ +++ GN++ M+
Sbjct: 539 LDQILLNGNNITML 552
>ref|NP_013543.1| Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p
and either Lsm1p or 8p): cytoplasmic Lsm1p complex
involved in mRNA decay; nuclear Lsm8p complex part of U6
snRNP and possibly involved in processing tRNA, snoRNA,
and rRNA; Lsm3p [Saccharomyces cerevisiae]
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)
Length = 89
Score = 41.2 bits (95), Expect = 0.027
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----VNGNDKTD----IGMVV 299
LK +D+++ IK+ R ++GTL+ FD N+V+ + VE +N + ++ MV
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVF 67
Query: 298 IRGNSVVMI 272
IRG++V +I
Sbjct: 68 IRGDTVTLI 76
>dbj|BAA79491.1| 77aa long hypothetical small nuclear ribonucleoprotein [Aeropyrum
pernix K1]
sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein
ref|NP_147300.1| small nuclear ribonucleoprotein [Aeropyrum pernix K1]
Length = 77
Score = 41.2 bits (95), Expect = 0.027
Identities = 16/58 (27%), Positives = 36/58 (62%)
Frame = -3
Query: 445 YMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMI 272
Y+D + +K+ + + G L+ +DQ +N+++ + E+ +G+ ++RG+SVV+I
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIRRLGLTLVRGDSVVVI 73
>gb|EAL29909.1| GA15189-PA [Drosophila pseudoobscura]
Length = 95
Score = 41.2 bits (95), Expect = 0.027
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ Y++ + I R IGTL+GFDQ +N+++D E +G ++ +G+ +IRG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTSSGIEQIVLGLHIIRG 63
Query: 289 NSVVMIEALE 260
+++ +I ++
Sbjct: 64 DNIAVIGLID 73
>emb|CAG60479.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_447542.1| hypothetical protein CAGL0I06721g [Candida glabrata CBS138]
Length = 90
Score = 40.8 bits (94), Expect = 0.036
Identities = 21/72 (29%), Positives = 45/72 (62%), Gaps = 11/72 (15%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDN----TVEVNGND--KTDI-----G 308
+ K +D+++ I + +NR G L GFD+F+N+++++ T E+ ND K+++ G
Sbjct: 12 IDKTIDQQVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEVVMEHHG 71
Query: 307 MVVIRGNSVVMI 272
+++ GN++ M+
Sbjct: 72 RMLLSGNNITML 83
>ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gb|EAL49252.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 89
Score = 40.8 bits (94), Expect = 0.036
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEV--NGNDKTDIGMVVIRGNSVVMIEALE 260
GTL GFDQ++NLV+ +T EV N + IG ++++G ++ +I +E
Sbjct: 41 GTLSGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVISKIE 87
>gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
ref|NP_986796.1| AGR130Wp [Eremothecium gossypii]
Length = 80
Score = 40.8 bits (94), Expect = 0.036
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGND---KTDIGMVVIRGNS 284
+ + +++ + + + +NR GTL GFD F+N+V+++ VE + D K G +++ GN+
Sbjct: 9 IDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNN 68
Query: 283 VVMI 272
+ ++
Sbjct: 69 ITVL 72
>emb|CAB54975.1| SPAC2F3.17c [Schizosaccharomyces pombe]
ref|NP_594380.1| hypothetical protein SPAC2F3.17c [Schizosaccharomyces pombe 972h-]
sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6
pir||T38534 small nuclear ribonucleoprotein, F-like - fission yeast
(Schizosaccharomyces pombe)
Length = 75
Score = 40.8 bits (94), Expect = 0.036
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
L K + KK+ I++++ G L D +MNL ++ T E VNG G IRGN+V+
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVL 68
Query: 277 MIEALE 260
+ AL+
Sbjct: 69 YVSALD 74
>ref|XP_854453.1| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 91
Score = 40.8 bits (94), Expect = 0.036
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 281
K + ++ I M +++ ++GTL GFD F+N+V+++ E G T + +++ GN++
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 280 VMI 272
+
Sbjct: 80 TRL 82
>gb|AAW25134.1| SJCHGC05770 protein [Schistosoma japonicum]
Length = 139
Score = 40.8 bits (94), Expect = 0.036
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Frame = -3
Query: 436 KKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDK-TDI--GMVVIRGNSVVMIE 269
KK+ + + R+ IG LR DQF N+V+ N VE ++ +K D+ G+++IRG ++++I
Sbjct: 20 KKMVVSLRGGRMFIGFLRIIDQFGNVVLHNAVERIHVENKFCDVPQGILLIRGENIIIIG 79
Query: 268 ALEP 257
L P
Sbjct: 80 DLNP 83
>gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 40.8 bits (94), Expect = 0.036
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-----------NGNDKTDIGMV 302
+++D ++++ + R+++GT FD+ +NLV+ T E K +G+V
Sbjct: 9 QWIDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKTKGEPERQTKRILGLV 68
Query: 301 VIRGNSVVMIEALEP 257
+IRG ++V I A P
Sbjct: 69 IIRGENIVSINAEAP 83
>ref|XP_855162.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
[Canis familiaris]
Length = 356
Score = 40.4 bits (93), Expect = 0.047
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3
Query: 487 VTMSRSGQPPD--LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKT 317
V MS Q P LK+ + + + +K+N+ G L D +MN+ ++ T E VNG K
Sbjct: 275 VKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 334
Query: 316 DIGMVVIRGNSVVMI 272
G IRGN+V+ I
Sbjct: 335 KYGDAFIRGNNVLYI 349
>ref|XP_657435.1| U6 snRNA-associated Sm-like protein [Entamoeba histolytica
HM-1:IMSS]
gb|EAL52049.1| U6 snRNA-associated Sm-like protein, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 78
Score = 40.4 bits (93), Expect = 0.047
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -3
Query: 466 QPPDLKKY-MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRG 290
+P DL K +D + IK+ R + G LR FDQ +N+++ N E+ ++ IRG
Sbjct: 8 EPIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQEKTRTFPVLYIRG 67
Query: 289 NSVVMI 272
+ V++I
Sbjct: 68 DLVILI 73
>ref|XP_520443.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Pan
troglodytes]
Length = 92
Score = 40.4 bits (93), Expect = 0.047
Identities = 16/68 (23%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 23 RYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>ref|XP_799246.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
[Strongylocentrotus purpuratus]
Length = 83
Score = 40.4 bits (93), Expect = 0.047
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = -3
Query: 490 AVTMSRSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKT 317
+ T +R P D LK + + + +K+N+ G L D +MN+ ++ T E VNG K
Sbjct: 3 SATTARKQTPSDFLKLIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 62
Query: 316 DIGMVVIRGNSVVMI 272
G IRGN+V+ I
Sbjct: 63 KYGDAFIRGNNVLYI 77
>emb|CAF91744.1| unnamed protein product [Tetraodon nigroviridis]
Length = 133
Score = 40.4 bits (93), Expect = 0.047
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSVVM 275
+DKK + + R +IG LR DQF NLV TVE G DI G+ ++RG +VV+
Sbjct: 14 IDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIPRGIFIVRGENVVL 73
Query: 274 IEALE 260
+ ++
Sbjct: 74 LGEID 78
>emb|CAD52624.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
ref|NP_705387.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 93
Score = 40.0 bits (92), Expect = 0.061
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNT--VEVNGNDKTDIGMVVIRGNSVVMI 272
G + GFD++MN+V+D T + V N K ++G ++++G+++ +I
Sbjct: 43 GIILGFDEYMNMVLDQTKEISVKKNTKKELGKILLKGDTITLI 85
>ref|NP_001031238.1| unknown protein [Arabidopsis thaliana]
ref|NP_176747.1| unknown protein [Arabidopsis thaliana]
gb|AAM16215.1| At1g65700/F1E22_3 [Arabidopsis thaliana]
gb|AAL50104.1| At1g65700/F1E22_3 [Arabidopsis thaliana]
gb|AAM64576.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 98
Score = 40.0 bits (92), Expect = 0.061
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRG 290
L+ +D+ + + N R ++G L+GFDQ N+++D + E G + +G+ +IRG
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRG 66
Query: 289 NSVVMIEALE 260
+++ +I L+
Sbjct: 67 DNIGVIGELD 76
>ref|XP_576487.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Rattus
norvegicus]
Length = 92
Score = 40.0 bits (92), Expect = 0.061
Identities = 16/68 (23%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>ref|NP_502579.1| LSM Sm-like protein family member (lsm-3) [Caenorhabditis elegans]
emb|CAB60606.2| Hypothetical protein Y62E10A.12 [Caenorhabditis elegans]
Length = 102
Score = 40.0 bits (92), Expect = 0.061
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Frame = -3
Query: 487 VTMSRSGQPPD--LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVV------------- 353
VT+S + + P L+ +D+++ +KM +R + G LR FDQ +N+V+
Sbjct: 8 VTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVD 67
Query: 352 -DNTVEVNGNDKTDIGMVVIRGNSVVMI 272
D E+ K + M+ +RG+SV+++
Sbjct: 68 EDTFEEIYKQTKRVVPMLFVRGDSVILV 95
>ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein
gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
Length = 77
Score = 40.0 bits (92), Expect = 0.061
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVV 278
L + + + +++ R GTL G+D MNLV+ + E+ NG +G VVIRG++VV
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVV 68
Query: 277 MI 272
+
Sbjct: 69 FV 70
>ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus musculus]
ref|NP_003085.1| small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gb|AAH08262.1| Small nuclear ribonucleoprotein E [Mus musculus]
gb|AAH55765.1| Small nuclear ribonucleoprotein E [Mus musculus]
ref|XP_609990.2| PREDICTED: similar to small nuclear ribonucleoprotein E [Bos
taurus]
ref|XP_536093.2| PREDICTED: similar to small nuclear ribonucleoprotein E [Canis
familiaris]
gb|AAH51207.1| Small nuclear ribonucleoprotein E [Mus musculus]
ref|NP_990581.1| small nuclear ribonucleoprotein polypeptide E [Gallus gallus]
dbj|BAB31734.1| unnamed protein product [Mus musculus]
emb|CAA46624.1| SmE protein [Gallus gallus]
gb|AAH90951.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gb|AAH02639.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E)
(SmE)
sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E)
(SmE)
sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E)
(SmE)
gb|AAA90926.1| small nuclear RNA protein (snRNP E)
emb|CAA31007.1| unnamed protein product [Homo sapiens]
gb|AAA49073.1| small nuclear ribonucleoprotein E
Length = 92
Score = 40.0 bits (92), Expect = 0.061
Identities = 16/68 (23%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musculus]
gb|AAA36621.1| small nuclear ribonucleoprotein E
Length = 81
Score = 40.0 bits (92), Expect = 0.061
Identities = 16/68 (23%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 12 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 71
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 72 NITLLQSV 79
>gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein
Length = 72
Score = 40.0 bits (92), Expect = 0.061
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVV 278
L +D + +++ R G L+G+D MNLV+DN E+ +G + VVIRG++VV
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRGDNVV 68
Query: 277 MI 272
+
Sbjct: 69 YV 70
>gb|AAB59365.1| small nuclear ribonucleic protein
Length = 92
Score = 40.0 bits (92), Expect = 0.061
Identities = 16/68 (23%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>emb|CAG61986.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_449016.1| unnamed protein product [Candida glabrata]
Length = 158
Score = 40.0 bits (92), Expect = 0.061
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Frame = -3
Query: 442 MDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGN-DKTDIGMVVIRGNSV 281
+D+K+ + + ++ G LR FDQ+ NL++ + VE NG + D G+ +IRG +V
Sbjct: 36 VDRKIFVLLRDGKLFFGVLRTFDQYANLILQDCVERIYVQENGEYAEEDRGIFMIRGENV 95
Query: 280 VMI 272
VM+
Sbjct: 96 VML 98
>ref|XP_420431.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 (Sm
protein F) [Gallus gallus]
Length = 614
Score = 40.0 bits (92), Expect = 0.061
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3
Query: 487 VTMSRSGQPPD--LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKT 317
+ MS Q P LK+ + + + +K+N+ G L D +MN+ ++ T E VNG K
Sbjct: 533 IKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 592
Query: 316 DIGMVVIRGNSVVMI 272
G IRGN+V+ I
Sbjct: 593 KYGDAFIRGNNVLYI 607
>ref|XP_519332.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Pan
troglodytes]
Length = 407
Score = 40.0 bits (92), Expect = 0.061
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Frame = -3
Query: 436 KKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVIRGNSVVMI 272
KK+ M++ + GTL+GFDQ +NL++D + E G ++ +G+ ++RG++V +I
Sbjct: 322 KKMLCDMSSVGHMTGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 381
Query: 271 EALE 260
++
Sbjct: 382 GEID 385
>gb|AAO50828.2| similar to Arabidopsis thaliana (Mouse-ear cress). Similarity to
small nuclear ribonucleoprotein (Unknown protein)
(Hypothetical 27.0 kDa protein) [Dictyostelium
discoideum]
Length = 265
Score = 39.7 bits (91), Expect = 0.079
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Frame = -3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV---------NGNDKTDIGMVVI 296
+Y++ ++++ + RV++G FD+ MN+V+ + E + +K +GM++I
Sbjct: 3 QYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGMILI 62
Query: 295 RGNSVVMIEALEP 257
RG +VV + P
Sbjct: 63 RGETVVSMSVEAP 75
>ref|XP_945300.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Homo
sapiens]
ref|XP_933591.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Homo
sapiens]
Length = 92
Score = 39.7 bits (91), Expect = 0.079
Identities = 16/68 (23%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G
Sbjct: 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGG 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>gb|AAH72549.1| Zgc:92379 [Danio rerio]
ref|XP_694129.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
[Danio rerio]
ref|NP_001002077.1| hypothetical protein LOC415167 [Danio rerio]
Length = 80
Score = 39.7 bits (91), Expect = 0.079
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 475 RSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMV 302
R P D LK+ + + + +K+N+ G L D +MN+ V+ T E VNG K G
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDA 63
Query: 301 VIRGNSVVMI 272
+RGN+V+ I
Sbjct: 64 FLRGNNVLYI 73
>ref|NP_191540.1| unknown protein [Arabidopsis thaliana]
emb|CAB75800.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gb|AAO42427.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gb|AAO22668.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
Length = 91
Score = 39.7 bits (91), Expect = 0.079
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
LK + + +K+N+ GTL D +MN+ ++ T E VNG K G IRGN+V+
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
Query: 277 MIEAL 263
I +
Sbjct: 79 YISTV 83
>ref|XP_621458.2| PREDICTED: similar to LSM5 homolog, U6 small nuclear RNA associated
[Mus musculus]
Length = 62
Score = 39.7 bits (91), Expect = 0.079
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = -3
Query: 418 MNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSVVMI 272
M +++ ++GTL GFD F+N+V+++ E G T + +++ GN++ M+
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
>ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein
gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
Length = 72
Score = 39.7 bits (91), Expect = 0.079
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGMVVIRGNSVV 278
L +D + +++ R G L+G+D MNLV+DN E+ G + VVIRG++VV
Sbjct: 9 LNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRGDNVV 68
Query: 277 MI 272
+
Sbjct: 69 YV 70
>ref|YP_448199.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
Length = 81
Score = 39.7 bits (91), Expect = 0.079
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = -3
Query: 478 SRSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIGM 305
+ + +P D L + ++ ++ IK+ + G L+ FD MNLV+++ E+ +G +G+
Sbjct: 8 NNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEIKDGESICRLGV 67
Query: 304 VVIRGNSVVMI 272
V++RG+++V I
Sbjct: 68 VLVRGDNIVYI 78
>gb|AAC25622.1| R30783_1 [Homo sapiens]
Length = 145
Score = 39.3 bits (90), Expect = 0.10
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGN---------DKTDIGMVVIRGNSVVMI 272
G L+GFD +NLV+D T+E + D +G+VV RG SVV+I
Sbjct: 77 GILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>gb|AAH72854.1| MGC80249 protein [Xenopus laevis]
Length = 93
Score = 39.3 bits (90), Expect = 0.10
Identities = 17/68 (25%), Positives = 45/68 (66%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D++ E++ K+ IG ++++G+
Sbjct: 24 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIHLKTKSRKPIGRIMLKGD 83
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 84 NITLLQSV 91
>gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 39.3 bits (90), Expect = 0.10
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
LK + + +K+N+ GTL D +MN+ ++ T E VNG K G IRGN+V+
Sbjct: 19 LKSIRGRPVIVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
Query: 277 MIEAL 263
I +
Sbjct: 79 YISTV 83
>ref|XP_341121.2| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide E
[Rattus norvegicus]
Length = 92
Score = 39.3 bits (90), Expect = 0.10
Identities = 16/68 (23%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + +I++ N + G + GFD++MNLV+D+ E++ K+ +G ++++G+
Sbjct: 23 RYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD 82
Query: 286 SVVMIEAL 263
++ +++++
Sbjct: 83 NITLLQSV 90
>ref|NP_009011.1| Sm protein F [Homo sapiens]
gb|AAH78551.1| MGC85411 protein [Xenopus laevis]
ref|XP_872946.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 [Bos
taurus]
gb|AAH16026.1| Sm protein F [Homo sapiens]
gb|AAH30427.1| Lsm6 protein [Mus musculus]
gb|AAH99484.1| Lsm6 protein [Mus musculus]
gb|AAH98230.1| Lsm6 protein [Mus musculus]
dbj|BAE24870.1| unnamed protein product [Mus musculus]
dbj|BAE34418.1| unnamed protein product [Mus musculus]
dbj|BAE36530.1| unnamed protein product [Mus musculus]
dbj|BAC37251.1| unnamed protein product [Mus musculus]
dbj|BAB31555.1| unnamed protein product [Mus musculus]
gb|AAY41032.1| unknown [Homo sapiens]
ref|XP_904805.1| PREDICTED: LSM6 homolog, U6 small nuclear RNA associated isoform 4
[Mus musculus]
ref|XP_904799.1| PREDICTED: LSM6 homolog, U6 small nuclear RNA associated isoform 3
[Mus musculus]
ref|XP_896767.1| PREDICTED: LSM6 homolog, U6 small nuclear RNA associated isoform 1
[Mus musculus]
ref|XP_924850.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
isoform 8 [Mus musculus]
ref|XP_924845.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
isoform 7 [Mus musculus]
ref|XP_911337.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6
isoform 5 [Mus musculus]
emb|CAB45869.1| Lsm6 protein [Homo sapiens]
gb|AAD56230.1| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6
sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)
Length = 80
Score = 39.3 bits (90), Expect = 0.10
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 475 RSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMV 302
R P D LK+ + + + +K+N+ G L D +MN+ ++ T E VNG K G
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 301 VIRGNSVVMI 272
IRGN+V+ I
Sbjct: 64 FIRGNNVLYI 73
>emb|CAB11551.1| Hypothetical protein Y49E10.15 [Caenorhabditis elegans]
ref|NP_499620.1| Small Nuclear Ribonucleoprotein family member (snr-6)
[Caenorhabditis elegans]
sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)
(Sm-E) (SmE)
Length = 90
Score = 39.3 bits (90), Expect = 0.10
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = -3
Query: 394 GTLRGFDQFMNLVVDNTVEVNGNDK--TDIGMVVIRGNSVVMIEALEPVA 251
G + GFD+FMN+V D EVN K IG ++++G+++ +I A + A
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHAAQQEA 90
>emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 80
Score = 39.3 bits (90), Expect = 0.10
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 475 RSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMV 302
R P D LK+ + + + +K+N+ G L D +MN+ ++ T E VNG K G
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYGDA 63
Query: 301 VIRGNSVVMI 272
+RGN+V+ I
Sbjct: 64 FLRGNNVLYI 73
>ref|NP_609162.1| CG18591-PA [Drosophila melanogaster]
gb|AAO39600.1| GM19936p [Drosophila melanogaster]
gb|AAF52576.1| CG18591-PA [Drosophila melanogaster]
sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)
(Sm-E) (SmE)
Length = 94
Score = 39.3 bits (90), Expect = 0.10
Identities = 17/70 (24%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVE--VNGNDKTDIGMVVIRGN 287
+Y+ + ++++ N + + G + GFD++MNLV+D+ E V + ++G ++++G+
Sbjct: 22 RYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGRIMLKGD 81
Query: 286 SVVMIEALEP 257
++ +I+ + P
Sbjct: 82 NITLIQNVSP 91
>ref|XP_801807.1| PREDICTED: similar to small nuclear ribonucleoprotein E isoform 2
[Strongylocentrotus purpuratus]
ref|XP_779936.1| PREDICTED: similar to small nuclear ribonucleoprotein E isoform 1
[Strongylocentrotus purpuratus]
Length = 99
Score = 39.3 bits (90), Expect = 0.10
Identities = 17/72 (23%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Frame = -3
Query: 448 KYMDKKLQIKM----NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGN 287
+Y+ + ++++ +N + G + GFD++MN+V+D+ E + +KT +G ++++G+
Sbjct: 21 RYLQNRSRVQIWLYDQSNLRIEGHIIGFDEYMNVVLDDAEEYHKKNKTRKPLGRILLKGD 80
Query: 286 SVVMIEALEPVA 251
++ +I+ ++ A
Sbjct: 81 NITLIQNVQEAA 92
>ref|XP_574220.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 (Sm
protein F) [Rattus norvegicus]
Length = 111
Score = 39.3 bits (90), Expect = 0.10
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 475 RSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMV 302
R P D LK+ + + + +K+N+ G L D +MN+ ++ T E VNG K G
Sbjct: 35 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 94
Query: 301 VIRGNSVVMI 272
IRGN+V+ I
Sbjct: 95 FIRGNNVLYI 104
>ref|XP_392871.2| PREDICTED: similar to ENSANGP00000007148 [Apis mellifera]
Length = 438
Score = 39.3 bits (90), Expect = 0.10
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -3
Query: 469 GQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGND 323
G+ + ++++ +++I + +R IGT + FD+ MNL++ NT + D
Sbjct: 225 GKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPERED 284
Query: 322 KTDIGMVVIRGNSVVMIEALEP 257
K +G V++RG ++V + P
Sbjct: 285 KRVLGFVLLRGENIVSLTVEGP 306
>gb|EAR96393.1| Sm protein [Tetrahymena thermophila SB210]
Length = 143
Score = 39.3 bits (90), Expect = 0.10
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE----VNGNDKT-DIGMVVIRG 290
L+K + KK+QI +V+IG L+G DQ +N ++ + VE N KT G+ ++RG
Sbjct: 17 LEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKHGLYLLRG 76
Query: 289 NSVVMI 272
+++ ++
Sbjct: 77 DNIAVL 82
>gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 38.9 bits (89), Expect = 0.14
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Frame = -3
Query: 439 DKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE------------VNG-NDKTDIGMVV 299
DKKL + + R ++G LR +DQF NLV+ +T E V G D G+ +
Sbjct: 54 DKKLMLALRDGRKLVGILRSWDQFANLVLQSTKERIFVPPGTAPDQVRGLYADVDRGLFL 113
Query: 298 IRGNSVVMIEALE 260
+RG +V+++ ++
Sbjct: 114 VRGENVLLLGEID 126
>emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus multilocularis]
Length = 83
Score = 38.9 bits (89), Expect = 0.14
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = -3
Query: 481 MSRSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIG 308
MS+ P D LK + + + +K+N+ G L D +MN+V++ T E V G K G
Sbjct: 3 MSQKQTPRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVEGQLKNKYG 62
Query: 307 MVVIRGNSVVMI 272
IRGN+V I
Sbjct: 63 DTFIRGNNVFYI 74
>gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
Length = 216
Score = 38.9 bits (89), Expect = 0.14
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNT----VEVNGNDKTDIGMVVIRGNSVVMI 272
+ M R GTL GFD ++N+V+ + V +G +TD+G ++ GN++ M+
Sbjct: 21 VLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDLGDTLLNGNNIAMV 75
>gb|AAK73913.1| Lsm sm-like protein protein 6 [Caenorhabditis elegans]
ref|NP_490883.1| LSM Sm-like protein family member (lsm-6) [Caenorhabditis elegans]
Length = 77
Score = 38.9 bits (89), Expect = 0.14
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = -3
Query: 481 MSRSGQPPD-LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV-NGNDKTDIG 308
MS+ P + LKK + K + +K+N+ G L D +MN+ ++ T E NG + G
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 307 MVVIRGNSVVMI 272
IRGN+V+ I
Sbjct: 61 DAFIRGNNVLYI 72
>gb|AAY54785.1| IP05148p [Drosophila melanogaster]
Length = 99
Score = 38.9 bits (89), Expect = 0.14
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE 338
L + +DKKL + + R +IG LR DQF NLV+ T+E
Sbjct: 30 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIE 68
>gb|AAY54770.1| IP05048p [Drosophila melanogaster]
Length = 81
Score = 38.9 bits (89), Expect = 0.14
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVE 338
L + +DKKL + + R +IG LR DQF NLV+ T+E
Sbjct: 15 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIE 53
>gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 38.9 bits (89), Expect = 0.14
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNT----VEVNGNDKTDIGMVVIRGNSVVMI 272
+ M R GTL GFD ++N+V+ + V +G +TD+G ++ GN++ M+
Sbjct: 21 VLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDLGDTLLNGNNIAMV 75
>gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
ref|NP_558846.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 38.9 bits (89), Expect = 0.14
Identities = 18/61 (29%), Positives = 37/61 (60%)
Frame = -3
Query: 454 LKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVM 275
L+ + K++ +K+ + + G LR FDQ +NL++++ E+ + G +V+RG +V+
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRGENVLF 75
Query: 274 I 272
I
Sbjct: 76 I 76
>ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1]
gb|EAA68471.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1]
Length = 106
Score = 38.9 bits (89), Expect = 0.14
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNSVV 278
+K+N+ V G L+ D +MN+ ++ T E VNG + + G +RGN+V+
Sbjct: 28 VKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFVRGNNVM 77
>ref|XP_763438.1| U6 snRNA-associated Sm-like protein LSm8 [Theileria parva strain
Muguga]
gb|EAN31155.1| U6 snRNA-associated Sm-like protein LSm8, putative [Theileria
parva]
Length = 94
Score = 38.9 bits (89), Expect = 0.14
Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Frame = -3
Query: 460 PDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGN-----DKTDIGMVVI 296
P L+++++ + + RV +G L+GFDQ NLV+ N +E + ++ ++G+ ++
Sbjct: 3 PILEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIYLL 62
Query: 295 RGNSVVMI 272
RG+++V++
Sbjct: 63 RGDNIVLV 70
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,197,106,116
Number of Sequences: 3454138
Number of extensions: 24220621
Number of successful extensions: 57230
Number of sequences better than 10.0: 457
Number of HSP's better than 10.0 without gapping: 53659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57052
length of database: 1,185,965,366
effective HSP length: 124
effective length of database: 757,652,254
effective search space used: 62127484828
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)