BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 ... 204 3e-51
ref|NP_566107.1| unknown protein [Arabidopsis thaliana] >gi... 196 7e-49
gb|AAM64733.1| small nuclear ribonucleoprotein-like protein... 196 7e-49
ref|NP_850477.1| unknown protein [Arabidopsis thaliana] >gi... 195 1e-48
ref|XP_397475.2| PREDICTED: similar to CG1249-PA [Apis mell... 182 1e-44
gb|EAA13684.1| ENSANGP00000002741 [Anopheles gambiae str. P... 180 5e-44
gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus lae... 179 7e-44
ref|NP_001017582.1| hypothetical protein LOC550244 [Danio r... 179 7e-44
gb|AAH77664.1| MGC89748 protein [Xenopus tropicalis] >gi|52... 179 7e-44
ref|NP_081219.1| small nuclear ribonucleoprotein D2 [Mus mu... 179 7e-44
gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypepti... 179 7e-44
ref|NP_649645.1| CG1249-PA [Drosophila melanogaster] >gi|17... 179 1e-43
gb|EAL28046.1| GA11659-PA [Drosophila pseudoobscura] 179 1e-43
dbj|BAC32551.1| unnamed protein product [Mus musculus] 178 2e-43
gb|AAM94277.1| small nuclear ribonucleoprotein D2-like prot... 176 1e-42
ref|XP_576676.1| PREDICTED: similar to small nuclear ribonu... 176 1e-42
gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-... 172 1e-41
ref|XP_619909.1| PREDICTED: similar to small nuclear ribonu... 170 4e-41
emb|CAE75361.1| Hypothetical protein CBG23345 [Caenorhabdit... 169 9e-41
ref|XP_910243.1| PREDICTED: similar to small nuclear ribonu... 168 2e-40
ref|NP_506004.1| Small Nuclear Ribonucleoprotein family mem... 167 5e-40
ref|XP_484260.1| PREDICTED: similar to small nuclear ribonu... 166 6e-40
ref|XP_638255.1| hypothetical protein DDB0218705 [Dictyoste... 165 2e-39
emb|CAG02856.1| unnamed protein product [Tetraodon nigrovir... 155 1e-36
ref|XP_061427.1| PREDICTED: similar to small nuclear ribonu... 153 5e-36
ref|XP_942442.1| PREDICTED: similar to small nuclear ribonu... 150 5e-35
ref|XP_539112.1| PREDICTED: similar to small nuclear ribonu... 150 6e-35
gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus ... 147 4e-34
gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptoco... 147 4e-34
ref|XP_521555.1| PREDICTED: similar to small nuclear ribonu... 147 4e-34
dbj|BAD88260.1| putative small nuclear ribonucleoprotein [O... 146 9e-34
ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago m... 143 6e-33
emb|CAB16363.1| SPAC2C4.03c [Schizosaccharomyces pombe] >gi... 138 2e-31
emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes v... 138 2e-31
ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella... 135 2e-30
ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspe... 133 7e-30
dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae] 130 6e-29
ref|XP_505089.1| hypothetical protein [Yarrowia lipolytica]... 129 1e-28
ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptospo... 126 9e-28
gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210] 125 2e-27
ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodiu... 125 2e-27
ref|XP_742706.1| hypothetical protein PC000715.02.0 [Plasmo... 123 6e-27
ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodiu... 123 8e-27
ref|NP_473101.1| small nuclear ribonucleoprotein, putative ... 122 1e-26
ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theile... 120 4e-26
emb|CAG88765.1| unnamed protein product [Debaryomyces hanse... 120 7e-26
emb|CAI74255.1| small nuclear ribonucleoprotein, putative [... 119 1e-25
emb|CAC28820.1| probable small nuclear ribonucleoprotein ch... 113 6e-24
ref|NP_013377.1| Core Sm protein Sm D2; part of heterohepta... 107 4e-22
ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Ent... 107 6e-22
gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895] >gi|45... 105 2e-21
emb|CAG59111.1| unnamed protein product [Candida glabrata C... 105 2e-21
gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 1... 105 2e-21
ref|NP_914299.1| P0458E05.28 [Oryza sativa (japonica cultiv... 101 2e-20
ref|XP_453476.1| unnamed protein product [Kluyveromyces lac... 100 5e-20
gb|AAK68737.1| small nuclear ribonucleoprotein-like protein... 83 9e-15
ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus... 76 1e-12
gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans] 75 3e-12
ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Enceph... 70 1e-10
ref|XP_945567.1| PREDICTED: similar to small nuclear ribonu... 70 1e-10
ref|XP_548710.2| PREDICTED: similar to serine/threonine kin... 67 5e-10
emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leish... 63 1e-08
emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guil... 63 1e-08
ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Tryp... 63 1e-08
ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Tryp... 63 1e-08
gb|AAH14600.1| Unknown (protein for MGC:26736) [Homo sapiens] 61 5e-08
emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, p... 58 4e-07
gb|AAG00462.1| Sm-D2 [Trypanosoma brucei] 58 4e-07
gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypan... 58 4e-07
ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptospo... 55 3e-06
ref|XP_500743.1| hypothetical protein [Yarrowia lipolytica]... 54 6e-06
emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabdit... 54 6e-06
ref|NP_502579.1| LSM Sm-like protein family member (lsm-3) ... 54 8e-06
ref|XP_223423.3| PREDICTED: Kruppel-like factor 3 [Rattus n... 53 1e-05
ref|XP_657435.1| U6 snRNA-associated Sm-like protein [Entam... 52 2e-05
dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza... 52 3e-05
ref|NP_173542.1| unknown protein [Arabidopsis thaliana] >gi... 52 3e-05
sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (s... 52 3e-05
ref|XP_786272.1| PREDICTED: similar to LSM3 homolog, U6 sma... 52 3e-05
ref|XP_896849.1| PREDICTED: similar to CG1249-PA [Mus muscu... 52 3e-05
ref|NP_177812.1| unknown protein [Arabidopsis thaliana] >gi... 51 4e-05
gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura] 51 5e-05
ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyoste... 50 6e-05
ref|NP_704356.1| ribonucleoprotein, putative [Plasmodium fa... 50 8e-05
gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear c... 50 8e-05
ref|NP_732931.1| CG31184-PA [Drosophila melanogaster] >gi|2... 50 1e-04
gb|AAN71307.1| RE11655p [Drosophila melanogaster] 50 1e-04
ref|NP_055278.1| Lsm3 protein [Homo sapiens] >gi|13385806|r... 50 1e-04
emb|CAF94178.1| unnamed protein product [Tetraodon nigrovir... 50 1e-04
ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated ... 50 1e-04
gb|EAS07202.1| Sm protein [Tetrahymena thermophila SB210] 49 1e-04
ref|XP_636207.1| hypothetical protein DDB0188426 [Dictyoste... 49 1e-04
ref|XP_851528.1| PREDICTED: similar to LSM3 homolog, U6 sma... 49 2e-04
ref|XP_534071.1| PREDICTED: similar to LSM3 homolog, U6 sma... 48 3e-04
emb|CAB42366.2| SPBC9B6.05c [Schizosaccharomyces pombe] >gi... 48 3e-04
ref|XP_849902.1| PREDICTED: similar to LSM3 homolog, U6 sma... 48 4e-04
gb|EAA00883.2| ENSANGP00000011793 [Anopheles gambiae str. P... 47 7e-04
ref|XP_764675.1| hypothetical protein TP02_0106 [Theileria ... 47 0.001
emb|CAG87742.1| unnamed protein product [Debaryomyces hanse... 44 0.005
ref|XP_766985.1| hypothetical protein GLP_122_3813_3433 [Gi... 44 0.006
ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoeli... 44 0.008
emb|CAG89843.1| unnamed protein product [Debaryomyces hanse... 43 0.010
ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago m... 43 0.013
ref|XP_942368.1| PREDICTED: similar to LSM3 homolog, U6 sma... 43 0.013
ref|XP_934007.1| PREDICTED: similar to LSM3 homolog, U6 sma... 43 0.013
ref|XP_451766.1| unnamed protein product [Kluyveromyces lac... 42 0.017
gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) ... 42 0.017
pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Pro... 42 0.017
gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895] >gi|45... 42 0.023
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana] 42 0.030
ref|NP_915643.1| P0505D12.24 [Oryza sativa (japonica cultiv... 41 0.039
ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus... 41 0.051
dbj|BAD43836.1| unknown protein [Arabidopsis thaliana] 40 0.066
ref|NP_001032011.1| unknown protein [Arabidopsis thaliana] ... 40 0.066
ref|XP_770710.1| hypothetical protein GLP_680_47464_47838 [... 40 0.066
ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella... 39 0.15
ref|NP_013543.1| Lsm (Like Sm) protein; part of heterohepta... 39 0.15
pir||T40786 probable SNRNP SM-like protein - fission yeast ... 39 0.15
ref|XP_753396.1| small nuclear ribonucleoprotein LSM3 [Aspe... 39 0.15
ref|NP_849414.1| SMB [Arabidopsis thaliana] >gi|15237095|re... 39 0.19
ref|XP_523516.1| PREDICTED: similar to U6 snRNA-associated ... 39 0.25
ref|XP_577512.1| PREDICTED: similar to LSM3 homolog, U6 sma... 39 0.25
gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neof... 39 0.25
ref|XP_476727.1| putative snRNP(small nuclear ribonucleopro... 37 0.56
emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein... 37 0.73
dbj|BAB65770.1| 79aa long hypothetical small nuclear ribonu... 37 0.73
ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptospo... 36 1.2
gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210] 36 1.2
ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. ... 36 1.2
gb|AAH91343.1| Hypothetical protein LOC295283 [Rattus norve... 36 1.6
gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus a... 36 1.6
ref|ZP_01153713.1| Like-Sm ribonucleoprotein, core [Methano... 36 1.6
ref|XP_958507.1| hypothetical protein [Neurospora crassa N1... 35 2.1
emb|CAI74625.1| small nuclear ribonucleoprotein associated ... 35 2.1
gb|AAF42472.1| dentin sialophosphoprotein precursor [Homo s... 35 2.1
ref|NP_055023.2| dentin sialophosphoprotein preproprotein [... 35 2.1
ref|YP_504465.1| Like-Sm ribonucleoprotein, core [Methanosp... 35 2.1
dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplas... 35 2.1
sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein >gi|135... 35 2.1
ref|XP_580309.2| PREDICTED: similar to cytosolic phosphopro... 35 2.8
ref|NP_918348.1| dnaJ-like protein [Oryza sativa (japonica ... 35 2.8
gb|EAR88228.1| NLI interacting factor-like phosphatase fami... 35 2.8
gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum] 35 2.8
ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [... 35 2.8
ref|XP_746259.1| Plasmodium chabaudi chabaudi small nuclear... 35 2.8
ref|YP_448199.1| putative snRNP Sm-like protein [Methanosph... 35 2.8
gb|AAU38425.1| unknown [Mannheimia succiniciproducens MBEL5... 35 3.6
ref|XP_392871.2| PREDICTED: similar to ENSANGP00000007148 [... 35 3.6
gb|EAA04750.3| ENSANGP00000018479 [Anopheles gambiae str. P... 35 3.6
ref|XP_677480.1| small nuclear ribonucleoprotein [Plasmodiu... 35 3.6
ref|XP_533036.2| PREDICTED: similar to cytosolic phosphopro... 34 4.7
ref|XP_764928.1| small nuclear ribonucleoprotein B [Theiler... 34 4.7
ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoe... 34 4.7
gb|AAN37024.1| small nuclear ribonuclear protein, putative ... 34 4.7
gb|AAS56109.1| YER146W [Saccharomyces cerevisiae] >gi|63209... 34 4.7
gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-... 34 4.7
emb|CAI75598.1| small nuclear ribonucleoprotein (E), putati... 34 4.7
pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum S... 34 4.7
gb|EAA11463.2| ENSANGP00000007148 [Anopheles gambiae str. P... 34 6.2
gb|AAW45921.1| conserved hypothetical protein [Cryptococcus... 34 6.2
emb|CAE71635.1| Hypothetical protein CBG18602 [Caenorhabdit... 34 6.2
emb|CAC12364.1| small nuclear ribonucleoprotein related pro... 34 6.2
gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A] ... 34 6.2
ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosa... 34 6.2
ref|ZP_00996344.1| putative transmembrane efflux protein [J... 33 8.1
ref|XP_786252.1| PREDICTED: similar to Small nuclear ribonu... 33 8.1
ref|XP_415936.1| PREDICTED: similar to kinesin family membe... 33 8.1
ref|XP_500142.1| hypothetical protein [Yarrowia lipolytica]... 33 8.1
ref|XP_788645.1| PREDICTED: similar to Small nuclear ribonu... 33 8.1
emb|CAD52624.1| small nuclear ribonucleoprotein, putative [... 33 8.1
ref|XP_710394.1| putative spliceosomal snRNA Sm core bindin... 33 8.1
>gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica
cultivar-group)]
Length = 105
Score = 204 bits (518), Expect = 3e-51
Identities = 100/105 (95%), Positives = 102/105 (97%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA+E GKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 1 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>ref|NP_566107.1| unknown protein [Arabidopsis thaliana]
gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 196 bits (498), Expect = 7e-49
Identities = 94/105 (89%), Positives = 100/105 (95%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M ++ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 5 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 64
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
VREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 65 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 105
Score = 196 bits (498), Expect = 7e-49
Identities = 94/105 (89%), Positives = 100/105 (95%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M ++ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 60
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
VREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105
>ref|NP_850477.1| unknown protein [Arabidopsis thaliana]
ref|NP_973710.1| unknown protein [Arabidopsis thaliana]
ref|NP_567134.2| unknown protein [Arabidopsis thaliana]
emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
Length = 108
Score = 195 bits (496), Expect = 1e-48
Identities = 94/103 (91%), Positives = 100/103 (97%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+E+ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVR
Sbjct: 6 EEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVR 65
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
EMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 66 EMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108
>ref|XP_397475.2| PREDICTED: similar to CG1249-PA [Apis mellifera]
Length = 120
Score = 182 bits (461), Expect = 1e-44
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 15 ELAKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 74
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
TE+P+TGKGKKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 75 TELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
>gb|EAA13684.1| ENSANGP00000002741 [Anopheles gambiae str. PEST]
ref|XP_318388.1| ENSANGP00000002741 [Anopheles gambiae str. PEST]
Length = 118
Score = 180 bits (456), Expect = 5e-44
Identities = 85/100 (85%), Positives = 94/100 (94%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ ++EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 13 ELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 72
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
TEIP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 73 TEIPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 112
>gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 179 bits (455), Expect = 7e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|NP_001017582.1| hypothetical protein LOC550244 [Danio rerio]
ref|XP_699983.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Danio
rerio]
ref|XP_699955.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Danio
rerio]
gb|AAH93003.1| Hypothetical protein LOC550244 [Danio rerio]
Length = 118
Score = 179 bits (455), Expect = 7e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gb|AAH77664.1| MGC89748 protein [Xenopus tropicalis]
ref|NP_001005128.1| MGC89748 protein [Xenopus tropicalis]
emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
tropicalis]
Length = 118
Score = 179 bits (455), Expect = 7e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|NP_081219.1| small nuclear ribonucleoprotein D2 [Mus musculus]
ref|XP_512755.1| PREDICTED: hypothetical protein XP_512755 [Pan troglodytes]
gb|AAH00486.1| Small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
gb|AAH01930.1| Small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
ref|NP_808210.1| small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
ref|NP_004588.1| small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
gb|AAI02878.1| Hypothetical protein LOC514932 [Bos taurus]
dbj|BAC40147.1| unnamed protein product [Mus musculus]
dbj|BAB25006.1| unnamed protein product [Mus musculus]
ref|XP_214847.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
D2 [Rattus norvegicus]
gb|AAD22673.1| SMD2_HUMAN; SNRNP CORE PROTEIN D2; SM-D2 [Homo sapiens]
gb|AAC13776.1| Sm D2
sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
ref|NP_001029648.1| hypothetical protein LOC514932 [Bos taurus]
gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
Length = 118
Score = 179 bits (455), Expect = 7e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 179 bits (455), Expect = 7e-44
Identities = 84/96 (87%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|NP_649645.1| CG1249-PA [Drosophila melanogaster]
gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gb|AAF54135.1| CG1249-PA [Drosophila melanogaster]
sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 (snRNP core protein
D2) (Sm-D2)
Length = 119
Score = 179 bits (453), Expect = 1e-43
Identities = 84/99 (84%), Positives = 93/99 (93%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ ++EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 14 ELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 73
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
TE+P+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 74 TELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>gb|EAL28046.1| GA11659-PA [Drosophila pseudoobscura]
Length = 118
Score = 179 bits (453), Expect = 1e-43
Identities = 84/99 (84%), Positives = 93/99 (93%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ ++EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMW
Sbjct: 13 ELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMW 72
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
TE+P+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73 TELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 111
>dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 178 bits (452), Expect = 2e-43
Identities = 83/96 (86%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Chlamys farreri]
Length = 119
Score = 176 bits (445), Expect = 1e-42
Identities = 82/96 (85%), Positives = 92/96 (95%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
++E+EEF+TGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTE+
Sbjct: 19 QREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEV 78
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PKTGKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 79 PKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>ref|XP_576676.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
D2 [Rattus norvegicus]
Length = 118
Score = 176 bits (445), Expect = 1e-42
Identities = 81/96 (84%), Positives = 93/96 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL S+KNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E+WTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNKDR+ISKMFLRG+SVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGNSVIVVLRNP 113
>gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
Length = 125
Score = 172 bits (436), Expect = 1e-41
Identities = 79/107 (73%), Positives = 96/107 (89%)
Frame = +1
Query: 193 QAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 372
+ K+EEEEF+TGP+SVL SV+NNTQVLINCRNN+KLL R++AFDRHCNMVLENVREMW
Sbjct: 16 ELAKREEEEFTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMW 75
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSP 513
TE+PKTGKGKKKA V++D++ISKMFLRGDSVI+V++NPK + Q P
Sbjct: 76 TELPKTGKGKKKAKAVSRDKYISKMFLRGDSVILVVKNPKEAVRQQP 122
>ref|XP_619909.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
Length = 118
Score = 170 bits (431), Expect = 4e-41
Identities = 80/96 (83%), Positives = 90/96 (93%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEEFNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+ KGKKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 78 PKSSKGKKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>emb|CAE75361.1| Hypothetical protein CBG23345 [Caenorhabditis briggsae]
Length = 118
Score = 169 bits (428), Expect = 9e-41
Identities = 81/95 (85%), Positives = 88/95 (92%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP 384
KEEEEFS GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P
Sbjct: 19 KEEEEFSVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 78
Query: 385 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
KTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 79 KTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>ref|XP_910243.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
Length = 118
Score = 168 bits (426), Expect = 2e-40
Identities = 80/96 (83%), Positives = 89/96 (92%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K EEEEF+TGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KWEEEEFNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+ KGKKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 78 PKSSKGKKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>ref|NP_506004.1| Small Nuclear Ribonucleoprotein family member (snr-4)
[Caenorhabditis elegans]
emb|CAB01413.1| Hypothetical protein C52E4.3 [Caenorhabditis elegans]
sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 (snRNP core protein
D2) (Sm-D2)
Length = 118
Score = 167 bits (422), Expect = 5e-40
Identities = 79/95 (83%), Positives = 88/95 (92%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP 384
KE+EEF+ GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P
Sbjct: 19 KEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVP 78
Query: 385 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
KTGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 79 KTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>ref|XP_484260.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
ref|XP_920955.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
Length = 118
Score = 166 bits (421), Expect = 6e-40
Identities = 79/96 (82%), Positives = 88/96 (91%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K EEEEF+TGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KWEEEEFNTGPLSVLTQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKGKKK+ PVNK+ +ISKMFL GDS I+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKNCYISKMFLHGDSFIVVLRNP 113
>ref|XP_638255.1| hypothetical protein DDB0218705 [Dictyostelium discoideum]
gb|EAL64772.1| hypothetical protein DDB0218705 [Dictyostelium discoideum]
Length = 112
Score = 165 bits (417), Expect = 2e-39
Identities = 82/111 (73%), Positives = 93/111 (83%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M DE K ++ S GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 4 MNDETMEDKPDD---SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQS 510
V+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP +P Q+
Sbjct: 61 VKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNPLGAPPQA 111
>emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 155 bits (393), Expect = 1e-36
Identities = 72/83 (86%), Positives = 80/83 (96%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 17 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 76
Query: 382 PKTGKGKKKALPVNKDRFISKMF 450
PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 77 PKSGKGKKKSKPVNKDRYISKMF 99
>ref|XP_061427.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
Length = 117
Score = 153 bits (387), Expect = 5e-36
Identities = 74/96 (77%), Positives = 85/96 (88%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLENV+E WTE+
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKG KK+ PVNKD +IS+MFL GD VI+VLRNP
Sbjct: 78 PKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNP 112
>ref|XP_942442.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
Length = 117
Score = 150 bits (379), Expect = 5e-35
Identities = 73/96 (76%), Positives = 84/96 (87%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TG LSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLENV+E WTE+
Sbjct: 18 KREEEEFNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKG KK+ PVNKD +IS+MFL GD VI+VLRNP
Sbjct: 78 PKSGKG-KKSKPVNKDCYISRMFLHGDLVIVVLRNP 112
>ref|XP_539112.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Canis
familiaris]
Length = 117
Score = 150 bits (378), Expect = 6e-35
Identities = 73/94 (77%), Positives = 84/94 (89%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K+EEEEF+TGPLSVL SVKNNTQVLINC N KKLLGRV+AF RHCNMVLENV+EMWT++
Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCCN-KKLLGRVKAFKRHCNMVLENVKEMWTKV 76
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 483
PK+ KGKKK+ PVNKD +ISKMFL G S+I+VLR
Sbjct: 77 PKSSKGKKKSKPVNKDHYISKMFLCGHSIIVVLR 110
>gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 147 bits (371), Expect = 4e-34
Identities = 78/104 (75%), Positives = 86/104 (82%)
Frame = +1
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S DE Q + EE E S GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRHCNMVLE
Sbjct: 64 SELDEAQIRELEEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLE 123
Query: 355 NVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 486
NV+EMWTE PK GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 124 NVKEMWTETPK-GKGKK---PVNKDRFISKMFLRGDSVILVLRN 163
>gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
Length = 111
Score = 147 bits (371), Expect = 4e-34
Identities = 78/104 (75%), Positives = 86/104 (82%)
Frame = +1
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S DE Q + EE E S GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRHCNMVLE
Sbjct: 10 SELDEAQIRELEEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLE 69
Query: 355 NVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 486
NV+EMWTE PK GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 70 NVKEMWTETPK-GKGKK---PVNKDRFISKMFLRGDSVILVLRN 109
>ref|XP_521555.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
D2; snRNP core protein D2; small nuclear
ribonucleoprotein D2 polypeptide (16.5kD) [Pan
troglodytes]
Length = 117
Score = 147 bits (371), Expect = 4e-34
Identities = 72/96 (75%), Positives = 83/96 (86%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K EEEEF+ GPLSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLEN++EMWTE+
Sbjct: 18 KXEEEEFNMGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENMKEMWTEV 77
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
PK+GKG KK+ PVNKD +IS+MFL GD VI+VL NP
Sbjct: 78 PKSGKG-KKSKPVNKDCYISRMFLHGDLVIMVLWNP 112
>dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa (japonica
cultivar-group)]
Length = 431
Score = 146 bits (368), Expect = 9e-34
Identities = 69/73 (94%), Positives = 72/73 (98%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 359 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 418
Query: 454 RGDSVIIVLRNPK 492
RGDSVIIVL+NPK
Sbjct: 419 RGDSVIIVLKNPK 431
>ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
Length = 111
Score = 143 bits (361), Expect = 6e-33
Identities = 74/104 (71%), Positives = 86/104 (82%)
Frame = +1
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S D++Q + E+ E S GPLSVL SV+N+TQ+LI RNNKKLL RV+AFDRH NMVLE
Sbjct: 10 SELDQSQIRELEQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLE 69
Query: 355 NVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 486
NV+EMWTE+PK GKGKK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 70 NVKEMWTEVPK-GKGKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>emb|CAB16363.1| SPAC2C4.03c [Schizosaccharomyces pombe]
ref|NP_594506.1| hypothetical protein SPAC2C4.03c [Schizosaccharomyces pombe 972h-]
sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2 (snRNP core protein
D2) (Sm-D2)
Length = 115
Score = 138 bits (348), Expect = 2e-31
Identities = 70/105 (66%), Positives = 81/105 (77%)
Frame = +1
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S E + + EE EFS GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLE
Sbjct: 10 SELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLE 69
Query: 355 NVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
NV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 70 NVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 138 bits (347), Expect = 2e-31
Identities = 68/113 (60%), Positives = 85/113 (75%)
Frame = +1
Query: 154 AEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDR 333
A ++ G +E Q +EE + GPLS+L +VK N Q+L+NCRNN+KLL R +AFDR
Sbjct: 2 ASRKREGMTPEEAQRHVPQEETITEGPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDR 61
Query: 334 HCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
H NMVLENV EMWTE+PK KG KK PVNK+RFI K+FLRGDSVI+V++NPK
Sbjct: 62 HMNMVLENVCEMWTEMPKKQKG-KKTKPVNKERFIHKLFLRGDSVILVIKNPK 113
>ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
gb|EAA76548.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 135 bits (340), Expect = 2e-30
Identities = 67/98 (68%), Positives = 80/98 (81%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + + EE EFS GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 57 EYEIAQLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKE 116
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
MWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 117 MWTETPRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 153
>ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
Length = 122
Score = 133 bits (334), Expect = 7e-30
Identities = 66/98 (67%), Positives = 78/98 (79%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + EE E + GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+E
Sbjct: 27 EYEVALVEEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKE 86
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
MWTE PK GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 MWTEKPKGGKGR----GVNKDRFISKMFLRGDSVILVL 120
>dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae]
Length = 115
Score = 130 bits (326), Expect = 6e-29
Identities = 65/98 (66%), Positives = 77/98 (78%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + EE E + GPLS+L + + +TQVLI CR+N++LL RV+AFDRHCNMVLENV+E
Sbjct: 20 EYEVSLVEEHELTAGPLSLLQTATRTHTQVLIACRSNRRLLARVKAFDRHCNMVLENVKE 79
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
MWTE PK GKGK VNKDRFISKMFLRGDSVI+VL
Sbjct: 80 MWTEKPKGGKGK----GVNKDRFISKMFLRGDSVILVL 113
>ref|XP_505089.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG77896.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 115
Score = 129 bits (323), Expect = 1e-28
Identities = 66/93 (70%), Positives = 76/93 (81%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
K EE EFS GPLS+L +V+N+TQVLI+CRNNKKLL RV+AFDRH NMVLENV+EMWTE
Sbjct: 22 KLEEYEFSHGPLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTEK 81
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
KT G K V KDRFISKMFLRGD+VI+V+
Sbjct: 82 TKTASG-KPGKTVTKDRFISKMFLRGDTVILVV 113
>ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
Length = 106
Score = 126 bits (316), Expect = 9e-28
Identities = 61/101 (60%), Positives = 81/101 (80%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E+Q KK+ S GPLS+L VK NTQ+L+NCRNN+K+LGRV+AFDRHCN++L + RE
Sbjct: 8 ESQTTKKDNP--SEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDARE 65
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
+WTE K+GK K A +NKDRFISK+F+RGDSVI++L++P
Sbjct: 66 IWTESMKSGK-KGSAKYINKDRFISKLFVRGDSVILILKSP 105
>gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 125 bits (314), Expect = 2e-27
Identities = 61/94 (64%), Positives = 76/94 (80%)
Frame = +1
Query: 211 EEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKT 390
EE FS GP S+L +VK NTQVLI RNN+K+L +VRAFDRH NMVLENV EMWTE+P+
Sbjct: 10 EETFSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVPRG 69
Query: 391 GKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
G KK+ P+ K+R+I+K+FLRGDSVI VL+NP+
Sbjct: 70 SHG-KKSKPMKKERYITKLFLRGDSVIFVLKNPQ 102
>ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii str.
17XNL]
gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 125 bits (313), Expect = 2e-27
Identities = 61/99 (61%), Positives = 76/99 (76%)
Frame = +1
Query: 196 AGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 375
A ++ + GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W
Sbjct: 6 ANEENRDNPENGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWV 65
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
EI K K KKK +NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 66 EIIKDKKKKKK---INKDRYISILFLRGDSVILILRNPK 101
>ref|XP_742706.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi]
emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi]
Length = 101
Score = 123 bits (309), Expect = 6e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVVKDKKKKKK 76
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 123 bits (308), Expect = 8e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVIKDKKKKKK 76
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ref|NP_473101.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 122 bits (307), Expect = 1e-26
Identities = 58/88 (65%), Positives = 72/88 (81%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 120 bits (302), Expect = 4e-26
Identities = 59/95 (62%), Positives = 74/95 (77%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
+ ++ GPLS+L V+ N QVLINCRNN+K+L RV+AFDRHCNM+L NVREMWT +
Sbjct: 15 DNKDNPAGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTNVREMWT-VRG 73
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
G GKKK KDRF+S++FLRGDSVI+VL+NPK
Sbjct: 74 KGTGKKKL--ETKDRFLSRLFLRGDSVIVVLKNPK 106
>emb|CAG88765.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_460458.1| hypothetical protein DEHA0F02420g [Debaryomyces hansenii CBS767]
Length = 115
Score = 120 bits (300), Expect = 7e-26
Identities = 57/99 (57%), Positives = 77/99 (77%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + K EE EF+ GP+S+L +V N + V+I+CRNN KL+ +V+AFDRHCN++LENV+E
Sbjct: 14 ELELQKLEEFEFTHGPMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKE 73
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 483
+WTE K KG KK +K+RF+SKMFLRGDSV+IVL+
Sbjct: 74 LWTESVKNNKG-KKIKSTSKERFVSKMFLRGDSVVIVLK 111
>emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
Length = 106
Score = 119 bits (298), Expect = 1e-25
Identities = 59/105 (56%), Positives = 78/105 (74%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M + + + + ++ GPLS+L V+ N QVLINCRNN+K+L RV+AFDRHCNM+L +
Sbjct: 5 MKQDTTSMELDNKDNPVGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTD 64
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
VREMWT + G GKKK KDRFI+++FLRGDSVI+VL+NPK
Sbjct: 65 VREMWT-VRGKGTGKKKL--ETKDRFITRLFLRGDSVIVVLKNPK 106
>emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
ref|XP_961124.1| hypothetical protein [Neurospora crassa N150]
ref|XP_323079.1| hypothetical protein [Neurospora crassa]
gb|EAA31888.1| hypothetical protein [Neurospora crassa]
Length = 126
Score = 113 bits (283), Expect = 6e-24
Identities = 55/89 (61%), Positives = 69/89 (77%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + EE EFS GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+E
Sbjct: 21 EYEVSLLEEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKE 80
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFL 453
MWTE P+ G KK PVNKDRFISKMF+
Sbjct: 81 MWTETPRLANG-KKGKPVNKDRFISKMFV 108
>ref|NP_013377.1| Core Sm protein Sm D2; part of heteroheptameric complex (with
Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is
part of the spliceosomal U1, U2, U4, and U5 snRNPs;
homolog of human Sm D2; Smd2p [Saccharomyces cerevisiae]
sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
Length = 110
Score = 107 bits (267), Expect = 4e-22
Identities = 52/94 (55%), Positives = 70/94 (74%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--- 78
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
KK +N++RFISK+FLRGDSVI+VL+ P
Sbjct: 79 ----KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
ref|XP_649862.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gb|EAL44476.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 101
Score = 107 bits (266), Expect = 6e-22
Identities = 53/96 (55%), Positives = 71/96 (73%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
++E + GP +L +V+ + QVLINCRNNKKL+ RV+AFDRH NMVLEN++E+WTE+
Sbjct: 2 EEETKALVEGPFQLLTEAVEKHGQVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEM 61
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
+ GK KA R ISKMFLRGDSVI++++NP
Sbjct: 62 KRDSDGKLKAKLC--QRSISKMFLRGDSVIVIVKNP 95
>gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
ref|NP_986943.1| AGR277Wp [Eremothecium gossypii]
Length = 108
Score = 105 bits (262), Expect = 2e-21
Identities = 52/101 (51%), Positives = 76/101 (75%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
+++ + EE EF GP+S++ ++ T V+I+ RNN K++ RV++FDRHCNMVLENV+E
Sbjct: 14 QDELAQLEEFEFKHGPMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKE 73
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
+W+E +GKK + NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 74 IWSE----REGKKIS---NKERFISKLFLRGDSVIVVLKAP 107
>emb|CAG59111.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_446187.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 105 bits (261), Expect = 2e-21
Identities = 50/94 (53%), Positives = 69/94 (73%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EE EF GP+S++ ++ V+I+ RNN KL+ RV+AFDRHCN+VLENV+E+WTE
Sbjct: 22 EEFEFKHGPMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWTE--- 78
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
KK +N++RFISK+FLRGDSVI++L+ P
Sbjct: 79 ----KKNKQTINRERFISKLFLRGDSVIVILKAP 108
>gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 105 bits (261), Expect = 2e-21
Identities = 52/87 (59%), Positives = 66/87 (75%)
Frame = +1
Query: 187 ENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
E + + E E S GPLS+L +V++++QVLI+ R+N+KLL RV+AFDRHCNM+LENV+E
Sbjct: 19 EYEIAQLENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKE 78
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKM 447
MWTE P KK PVNKDRFISKM
Sbjct: 79 MWTETPV--HNGKKGRPVNKDRFISKM 103
>ref|NP_914299.1| P0458E05.28 [Oryza sativa (japonica cultivar-group)]
Length = 50
Score = 101 bits (252), Expect = 2e-20
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +1
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 492
MVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK
Sbjct: 1 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK 50
>ref|XP_453476.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00572.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 110
Score = 100 bits (249), Expect = 5e-20
Identities = 50/92 (54%), Positives = 69/92 (75%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EE E GP+S++ S+ T V+I+ RNN KL+ RV++FD+HCNMVLENV+E+WTE
Sbjct: 25 EEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWTE--- 81
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 483
GKK VN++RF++K+FLRGDSVIIV++
Sbjct: 82 NVNGKK----VNRERFVAKLFLRGDSVIIVVK 109
>gb|AAK68737.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 135
Score = 83.2 bits (204), Expect = 9e-15
Identities = 43/77 (55%), Positives = 51/77 (66%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M ++ GK EEEEF+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVR L+
Sbjct: 5 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRLLTGTATWFLKM 64
Query: 358 VREMWTEIPKTGKGKKK 408
+ K K ++K
Sbjct: 65 SEKCGLRFRKPEKERRK 81
Score = 35.8 bits (81), Expect = 1.6
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = +2
Query: 299 RSCLAVFVLLIATVTWCSRTCVRCGQRSPXXXXXXXXXXXXXXIDSSVRCSSGATRSS*C 478
R L LL T TW + +CG R IDSS RCS T+S
Sbjct: 45 RKLLGRVRLLTGTATWFLKMSEKCGLRFRKPEKERRKLFLLTEIDSSARCSCVETQSLSS 104
Query: 479 *GTRSDRPTSH 511
GT S+R +S+
Sbjct: 105 SGTPSERSSSY 115
>ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 76.3 bits (186), Expect = 1e-12
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N Q L+ ++ L RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISK
Sbjct: 5 NIQTLLQKPRSECTLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISK 60
Query: 445 MFL 453
M+L
Sbjct: 61 MYL 63
>gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 74.7 bits (182), Expect = 3e-12
Identities = 34/83 (40%), Positives = 55/83 (66%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GP +L K N++++I+ +N K G +R FD+HCN++LE+V E+W E + KK
Sbjct: 16 GPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
Query: 409 ALPVNKDRFISKMFLRGDSVIIV 477
+ V K++FI K+F RGD+VI++
Sbjct: 76 KV-VIKEKFIPKLFFRGDAVILI 97
>ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 69.7 bits (169), Expect = 1e-10
Identities = 38/92 (41%), Positives = 61/92 (66%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEI 381
+KE E GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T
Sbjct: 12 EKETMEMK-GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTR 70
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
K KG+KK R + K+F+RGD+VI+V
Sbjct: 71 GK-NKGRKKRQGCEFSRKLGKVFIRGDTVILV 101
>ref|XP_945567.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
ref|XP_372472.2| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
Length = 95
Score = 69.7 bits (169), Expect = 1e-10
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 9/78 (11%)
Frame = +1
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN---------PK* 495
++L ++EMWTE+PK+G GKKK+ P+ KD +ISK FLR D I+VLRN P
Sbjct: 13 LLLRYLKEMWTEVPKSGNGKKKSTPIKKDHYISKTFLREDRDIVVLRNSLIASKKGPPLR 72
Query: 496 SPNQSPCSSYALSLGSRN 549
N PC A ++G N
Sbjct: 73 RRNSFPCPMEATAIGVEN 90
>ref|XP_548710.2| PREDICTED: similar to serine/threonine kinase 32C [Canis
familiaris]
Length = 556
Score = 67.4 bits (163), Expect = 5e-10
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Frame = +1
Query: 127 RRPERLAT--GAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNK 300
R P+ T GA + GGGS+ T +SVL SV+NN+ VL++ +K
Sbjct: 40 REPKSAVTPRGAREGGGGSV---------------TRVVSVLTQSVENNSLVLVHGPRSK 84
Query: 301 KLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNK 426
K GRV A DR C +VL + +E WTE+P+ KG++K PV +
Sbjct: 85 KPPGRVEASDRRCYVVLGDAKETWTEVPEGSKGRRKTEPVTR 126
>emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major]
Length = 103
Score = 63.2 bits (152), Expect = 1e-08
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ TE G ++
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ 81
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNP 489
K R I +FLRG+SVI +++ P
Sbjct: 82 -----KQRTIENLFLRGESVIFIVKLP 103
>emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
ref|NP_113527.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/83 (36%), Positives = 54/83 (65%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
P + V+N+ V+I RNNK+++G++ +D+H N++LENV EI G+ +
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 412 LPVNKDRFISKMFLRGDSVIIVL 480
+ + K +FI K+FLRGD+++++L
Sbjct: 59 IKI-KSKFIPKVFLRGDNIVLIL 80
>ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 62.8 bits (151), Expect = 1e-08
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Frame = +1
Query: 175 SMADENQAGKKEEEEF-----STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC 339
++ E+ A K +EF S GP SVL +++N T+V I R NK L+ V AFD+H
Sbjct: 9 TLRTESGAKKVSSKEFLKTTVSEGPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHF 68
Query: 340 NMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
N+VL +V E+ K + K+R I MFLRG SV+ +++ P
Sbjct: 69 NLVLRDV----VELAMVNKQQ-------KERSIRNMFLRGGSVVFIVKLP 107
>ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 62.8 bits (151), Expect = 1e-08
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Frame = +1
Query: 175 SMADENQAGKKEEEEF-----STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC 339
++ E+ A K +EF S GP SVL +++N T+V I R NK L+ V AFD+H
Sbjct: 9 TLRTESGAKKVSSKEFLKTTVSEGPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHF 68
Query: 340 NMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 489
N+VL +V E+ K + K+R I MFLRG SV+ +++ P
Sbjct: 69 NLVLRDV----VELAMVNKEQ-------KERSIRNMFLRGGSVVFIVKLP 107
>gb|AAH14600.1| Unknown (protein for MGC:26736) [Homo sapiens]
Length = 55
Score = 60.8 bits (146), Expect = 5e-08
Identities = 32/46 (69%), Positives = 36/46 (78%), Gaps = 3/46 (6%)
Frame = +1
Query: 343 MVLENVREMWTEIPKTG---KGKKKALPVNKDRFISKMFLRGDSVI 471
MVLENV+EM TE+PK G KGKKK+ P NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
ref|XP_952604.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria annulata strain
Ankara]
Length = 94
Score = 57.8 bits (138), Expect = 4e-07
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +++ + + + C+N ++L+GR+ AFD HCNMVL +V E T + K +
Sbjct: 10 PLDMIRLNL--DEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNET 67
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
V K R +F+RGDS++++
Sbjct: 68 TKVTK-RDNGTIFVRGDSLVLL 88
>gb|AAG00462.1| Sm-D2 [Trypanosoma brucei]
Length = 111
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T +
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei TREU927]
Length = 111
Score = 57.8 bits (138), Expect = 4e-07
Identities = 35/88 (39%), Positives = 49/88 (55%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T +
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 409 ALPVNKDRFISKMFLRGDSVIIVLRNPK 492
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum]
Length = 95
Score = 55.1 bits (131), Expect = 3e-06
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK---TGKGK 402
PL ++ +S+ + QV + CR N++L G + A+D H NMVL NV E + E T +
Sbjct: 7 PLDLIRLSL--DEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSE 64
Query: 403 KKALPVNKDRFISKMFLRGDSVIIV 477
KK K R I +FLRGD +I+V
Sbjct: 65 KKL----KKRRIEMLFLRGDLIILV 85
>ref|XP_500743.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG82989.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 94
Score = 53.9 bits (128), Expect = 6e-06
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
M D + +G E PL ++ +S+ N V + R ++L G + A+D HC+MVL N
Sbjct: 1 MTDVDTSGGSE-------PLDLIGLSLNEN--VFVKLRGGRELYGLLHAYDIHCSMVLGN 51
Query: 358 VREMWTEI----PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SP 501
V E E PK KKK+ +F+RGDSVI+V NP P
Sbjct: 52 VEETVFEYVEGSPKLEARKKKS---------EMLFVRGDSVILVTSNPPKRP 94
>emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabditis briggsae]
Length = 102
Score = 53.9 bits (128), Expect = 6e-06
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +1
Query: 196 AGKKEEEEFSTG---PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
A +K+E S PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E
Sbjct: 2 ASEKKEVTLSATVEEPLDLLRLSL--DEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE 59
Query: 367 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
T + + + + R + +F+RGDSVI+V
Sbjct: 60 TIT-TREVDEDTFEEIYRQSKRVVPMLFVRGDSVILV 95
>ref|NP_502579.1| LSM Sm-like protein family member (lsm-3) [Caenorhabditis elegans]
emb|CAB60606.2| Hypothetical protein Y62E10A.12 [Caenorhabditis elegans]
Length = 102
Score = 53.5 bits (127), Expect = 8e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
+ R + +F+RGDSVI+V
Sbjct: 74 IYKQTKRVVPMLFVRGDSVILV 95
>ref|XP_223423.3| PREDICTED: Kruppel-like factor 3 [Rattus norvegicus]
Length = 709
Score = 53.1 bits (126), Expect = 1e-05
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLR 456
MVLEN++EMWTE+PK+ GKKK+ PVNK + KMFLR
Sbjct: 1 MVLENMKEMWTEVPKSSMGKKKSKPVNK---MPKMFLR 35
>ref|XP_657435.1| U6 snRNA-associated Sm-like protein [Entamoeba histolytica
HM-1:IMSS]
gb|EAL52049.1| U6 snRNA-associated Sm-like protein, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 78
Score = 52.0 bits (123), Expect = 2e-05
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
P+ ++ +S+ +N V I R +KL G++RAFD+H N++L NV EM+ E K +
Sbjct: 9 PIDLIKLSLDDN--VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE-------KTRT 59
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
PV +++RGD VI++
Sbjct: 60 FPV--------LYIRGDLVILI 73
>dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa (japonica
cultivar-group)]
Length = 104
Score = 51.6 bits (122), Expect = 3e-05
Identities = 31/100 (31%), Positives = 58/100 (58%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA A EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MAAAAAAAAAEEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 58
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
V E+ T + + ++ + K R I +F+RGD VI+V
Sbjct: 59 VEEIVTTVEIDDETYEEIVRTTK-RTIPFLFVRGDGVILV 97
>ref|NP_173542.1| unknown protein [Arabidopsis thaliana]
gb|AAG50100.1| unknown protein [Arabidopsis thaliana]
gb|AAF81363.1| Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene. [Arabidopsis thaliana]
Length = 97
Score = 51.6 bits (122), Expect = 3e-05
Identities = 28/90 (31%), Positives = 55/90 (61%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EE+ PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T I
Sbjct: 4 EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
+ ++ + K R + +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
Length = 50
Score = 51.6 bits (122), Expect = 3e-05
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNK 300
K+EEEEF+TGPLSV S K TQVLINCRN K
Sbjct: 18 KREEEEFNTGPLSVXTQSXKTXTQVLINCRNTK 50
>ref|XP_786272.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Strongylocentrotus purpuratus]
Length = 105
Score = 51.6 bits (122), Expect = 3e-05
Identities = 31/100 (31%), Positives = 58/100 (58%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA+E++A + PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +
Sbjct: 1 MAEESEAPSQPANTVEE-PLDLIRLSL--DERIYVKMRNDRELKGRLHAYDQHLNMILGD 57
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
V E T + + ++ K R I +F+RGD VI+V
Sbjct: 58 VEETVTAVEIDEETYEEIYKSTK-RSIQMLFVRGDGVILV 96
>ref|XP_896849.1| PREDICTED: similar to CG1249-PA [Mus musculus]
ref|XP_911911.1| PREDICTED: similar to CG1249-PA [Mus musculus]
Length = 103
Score = 51.6 bits (122), Expect = 3e-05
Identities = 33/74 (44%), Positives = 39/74 (52%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PLS+ +I+C N KL G+V+ F HCNMVLENV EM T T +
Sbjct: 15 PLSLGSCRHSRTLVFIISC--NSKLPGQVKDFSHHCNMVLENVTEMLTPRATTARSH--- 69
Query: 412 LPVNKDRFISKMFL 453
P NKD ISKM L
Sbjct: 70 -PSNKDHCISKMAL 82
>ref|NP_177812.1| unknown protein [Arabidopsis thaliana]
gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gb|AAG51149.1| Sm-like protein [Arabidopsis thaliana]
Length = 98
Score = 51.2 bits (121), Expect = 4e-05
Identities = 29/90 (32%), Positives = 54/90 (60%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
EEE PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T +
Sbjct: 4 EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
+ ++ + K R I +F+RGD VI+V
Sbjct: 62 DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura]
Length = 194
Score = 50.8 bits (120), Expect = 5e-05
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Frame = +1
Query: 208 EEEEFST------GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 369
EEE+ S PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E
Sbjct: 4 EEEQLSQVILPVKEPLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61
Query: 370 WTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
T + + ++ K R I +F+RGD VI+V
Sbjct: 62 VTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGVILV 96
>ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyostelium discoideum]
gb|EAL69055.1| hypothetical protein DDB0217913 [Dictyostelium discoideum]
Length = 101
Score = 50.4 bits (119), Expect = 6e-05
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP 384
K EE PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E +
Sbjct: 3 KREEGTVEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 385 KTGKGKKKALP---VNKDRFISKMFLRGDSVIIV 477
K + ++ + +N R I +F+RGD VI++
Sbjct: 61 KDEETDEEIIRFFLINIKRNIKMLFVRGDGVILI 94
>ref|NP_704356.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
emb|CAD51175.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
Length = 74
Score = 50.1 bits (118), Expect = 8e-05
Identities = 22/69 (31%), Positives = 43/69 (62%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
++ + C+ +++L+G++ A+D H NM+L NVRE + + K + +R + +F
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY---KYSVKENDEETVKKMERNLDMVF 60
Query: 451 LRGDSVIIV 477
+RGDS+I+V
Sbjct: 61 VRGDSIILV 69
>gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear cress). Sm-like protein
[Dictyostelium discoideum]
Length = 98
Score = 50.1 bits (118), Expect = 8e-05
Identities = 27/91 (29%), Positives = 53/91 (58%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP 384
K EE PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E +
Sbjct: 3 KREEGTVEEPLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60
Query: 385 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
K + ++ + N R I +F+RGD VI++
Sbjct: 61 KDEETDEEIIR-NIKRNIKMLFVRGDGVILI 90
>ref|NP_732931.1| CG31184-PA [Drosophila melanogaster]
gb|AAN13967.1| CG31184-PA [Drosophila melanogaster]
Length = 103
Score = 49.7 bits (117), Expect = 1e-04
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 49.7 bits (117), Expect = 1e-04
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>ref|NP_055278.1| Lsm3 protein [Homo sapiens]
ref|NP_080585.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
gb|AAH07055.1| Lsm3 protein [Homo sapiens]
ref|XP_858392.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
isoform 2 [Canis familiaris]
ref|XP_849275.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
isoform 1 [Canis familiaris]
gb|AAI08143.1| Unknown (protein for MGC:133527) [Bos taurus]
gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
dbj|BAB22585.1| unnamed protein product [Mus musculus]
emb|CAG33466.1| LSM3 [Homo sapiens]
dbj|BAB25303.1| unnamed protein product [Mus musculus]
gb|AAG14954.1| MDS017 [Homo sapiens]
ref|XP_216220.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Rattus norvegicus]
gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gb|AAD56227.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3
sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3
ref|NP_001032564.1| hypothetical protein LOC614759 [Bos taurus]
Length = 102
Score = 49.7 bits (117), Expect = 1e-04
Identities = 31/98 (31%), Positives = 55/98 (56%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K R I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 49.7 bits (117), Expect = 1e-04
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +1
Query: 178 MADE--NQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 351
MADE Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L
Sbjct: 1 MADEVEQQPATNTVEE----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 352 ENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
+V E T + + + + L + R I +F+RGD V++V
Sbjct: 55 GDVEETVTTV-EIDEETYEELYKSTKRNIPMLFVRGDGVVLV 95
>ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Gallus gallus]
Length = 102
Score = 49.7 bits (117), Expect = 1e-04
Identities = 31/98 (31%), Positives = 55/98 (56%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K R I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gb|EAS07202.1| Sm protein [Tetrahymena thermophila SB210]
Length = 90
Score = 49.3 bits (116), Expect = 1e-04
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ S+ N + I CR++++L G++ AFD H NM+LE+V E + + K+ A
Sbjct: 7 PLDLIKHSL--NQIIQIKCRHSRELKGKLLAFDTHLNMLLEDVEESFVQENKS----INA 60
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
+ R I +++RGD++I V
Sbjct: 61 AAQKQTRCIPMLYMRGDTIITV 82
>ref|XP_636207.1| hypothetical protein DDB0188426 [Dictyostelium discoideum]
gb|EAL62706.1| hypothetical protein DDB0188426 [Dictyostelium discoideum]
Length = 257
Score = 49.3 bits (116), Expect = 1e-04
Identities = 28/106 (26%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVL 351
++++ K +F+ GPLS+L ++++ +++ + R + G R AFD+H N++L
Sbjct: 150 EDHKILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIIL 209
Query: 352 ENVRE---MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
+V E + +P T + P K R+ ++F++GD+V+ V+
Sbjct: 210 RDVEEEYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>ref|XP_851528.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 102
Score = 48.5 bits (114), Expect = 2e-04
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSP--DERIYVKMRNDRELQGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K R I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>ref|XP_534071.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 102
Score = 48.1 bits (113), Expect = 3e-04
Identities = 30/98 (30%), Positives = 54/98 (55%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
D+ Q EE PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V
Sbjct: 6 DQQQTTNTVEE-----PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
E T I + ++ K I +F+RGD V++V
Sbjct: 59 ETVTTIEIDEEAYEEIYKSTKWN-IPMLFVRGDGVVLV 95
>emb|CAB42366.2| SPBC9B6.05c [Schizosaccharomyces pombe]
ref|NP_595747.1| hypothetical protein SPBC9B6.05c [Schizosaccharomyces pombe 972h-]
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
Length = 93
Score = 48.1 bits (113), Expect = 3e-04
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
L + + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>ref|XP_849902.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 102
Score = 47.8 bits (112), Expect = 4e-04
Identities = 29/100 (29%), Positives = 58/100 (58%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MAD+ G+++ PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +
Sbjct: 1 MADD--VGEQQTTNTIEEPLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGD 56
Query: 358 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
V E T I + + + + + R I +F+ GD V++V
Sbjct: 57 VEETVTTI-EIDEETYEEINKSTKRNIPMLFVWGDGVVLV 95
>gb|EAA00883.2| ENSANGP00000011793 [Anopheles gambiae str. PEST]
ref|XP_321595.2| ENSANGP00000011793 [Anopheles gambiae str. PEST]
Length = 92
Score = 47.0 bits (110), Expect = 7e-04
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +S+ + ++ + R ++L GR+ AFD+H NMVL + E T + + ++
Sbjct: 7 PLDLIRLSL--DEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 64
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
K R I +F+RGD VI+V
Sbjct: 65 YKTTK-RTIPMLFVRGDGVILV 85
>ref|XP_764675.1| hypothetical protein TP02_0106 [Theileria parva strain Muguga]
gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 46.6 bits (109), Expect = 0.001
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKK 408
PL ++ +++ + + + C+N ++L+GR++AFD HCNMVL V E T + K +
Sbjct: 10 PLDMIRLNL--DEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNNSKNE 66
>emb|CAG87742.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_459516.1| hypothetical protein DEHA0E05236g [Debaryomyces hansenii CBS767]
Length = 88
Score = 44.3 bits (103), Expect = 0.005
Identities = 22/68 (32%), Positives = 41/68 (60%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
VL+ R +++ G+++ +D HCNM+L + E ++P+ + PV K+ +F+
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQE------PVTKN--TDMVFV 76
Query: 454 RGDSVIIV 477
RGDSVI++
Sbjct: 77 RGDSVILI 84
>ref|XP_766985.1| hypothetical protein GLP_122_3813_3433 [Giardia lamblia ATCC 50803]
gb|EAA36838.1| GLP_122_3813_3433 [Giardia lamblia ATCC 50803]
Length = 126
Score = 43.9 bits (102), Expect = 0.006
Identities = 31/92 (33%), Positives = 47/92 (51%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPK 387
E EFS PL +L S+++ VL+ +NN + G + +FD H N++L N E
Sbjct: 46 EYTEFSN-PLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEE------- 95
Query: 388 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 483
TG + +RF + +RGDS+I V R
Sbjct: 96 TGH--------SLNRFFPLLVIRGDSIIFVTR 119
>ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii str. 17XNL]
gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 43.5 bits (101), Expect = 0.008
Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Frame = +1
Query: 220 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGR---------VRAFDRHCNMVLENVREMW 372
F GPL + ++++ ++ + C+ +++L G + A+D H NM+L N +E +
Sbjct: 10 FYKGPLDYIRLNMEE--EIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKY 67
Query: 373 TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
++ T + ++ + +R + +F+RGDS+I+V
Sbjct: 68 KQV--TIENNEECVK-QIERNLDMVFVRGDSIILV 99
>emb|CAG89843.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_461428.1| hypothetical protein DEHA0F26554g [Debaryomyces hansenii CBS767]
Length = 93
Score = 43.1 bits (100), Expect = 0.010
Identities = 31/97 (31%), Positives = 45/97 (46%)
Frame = +1
Query: 190 NQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 369
NQ E + PL ++ S+ + QVL+ N+K+ G + FD + NMVLENV E
Sbjct: 9 NQPAAGESPLSTILPLEIIDKSIGHKIQVLMT--NDKEFKGTLIGFDDYVNMVLENVEEF 66
Query: 370 WTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
E P K + I KM L G V +++
Sbjct: 67 DNEGP-------------KGKVIKKMLLNGSQVAMLI 90
>ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 42.7 bits (99), Expect = 0.013
Identities = 25/84 (29%), Positives = 46/84 (54%)
Frame = +1
Query: 226 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKK 405
T P ++ +S+ +V + R +++L G + A+D H N++L +V E + +
Sbjct: 24 TEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGS 81
Query: 406 KALPVNKDRFISKMFLRGDSVIIV 477
+ + V K R +F+RGDSVI+V
Sbjct: 82 ETVRVVK-RQSEMLFVRGDSVILV 104
>ref|XP_942368.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Homo sapiens]
Length = 101
Score = 42.7 bits (99), Expect = 0.013
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
++ + RN+++L GR+ +D+H NM+L +V E T I + ++ K I F
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQN-IPVFF 85
Query: 451 LRGDSVIIV 477
LRGD + +V
Sbjct: 86 LRGDGIFLV 94
>ref|XP_934007.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Homo sapiens]
Length = 101
Score = 42.7 bits (99), Expect = 0.013
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
++ + RN+++L GR+ +D+H NM+L +V E T I + ++ K I F
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQN-IPVFF 85
Query: 451 LRGDSVIIV 477
LRGD + +V
Sbjct: 86 LRGDGIFLV 94
>ref|XP_451766.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH02159.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 83
Score = 42.4 bits (98), Expect = 0.017
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +1
Query: 223 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGK 402
S PL +L +++ + +V + R+ ++L+G ++AFD HCN+VL + +E E+ +G
Sbjct: 2 SDTPLDLLKLNL--DERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGD 56
Query: 403 KKALPVNKDRFISKMFLRGDSVIIV 477
K +RF +F+RG V +V
Sbjct: 57 LK----TTERFSEMIFVRGGLVALV 77
>gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
ref|NP_342263.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 42.4 bits (98), Expect = 0.017
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N VL+ + NK++ G +R++D+H N+VL + EI G GKK +
Sbjct: 17 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSE----EIQSDGSGKK----------LGT 62
Query: 445 MFLRGDSVIIV 477
+ +RGD+VI++
Sbjct: 63 IVIRGDNVILI 73
>pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 42.4 bits (98), Expect = 0.017
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N VL+ + NK++ G +R++D+H N+VL + EI G GKK +
Sbjct: 19 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSE----EIQSDGSGKK----------LGT 64
Query: 445 MFLRGDSVIIV 477
+ +RGD+VI++
Sbjct: 65 IVIRGDNVILI 75
>gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
ref|NP_984984.1| AER125Cp [Eremothecium gossypii]
Length = 83
Score = 42.0 bits (97), Expect = 0.023
Identities = 28/85 (32%), Positives = 48/85 (56%)
Frame = +1
Query: 223 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGK 402
S PL +L +++ + +V + R +KL G ++AFD HCN+VL + E I + G+
Sbjct: 2 SDTPLDLLRLNL--DERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEE---TIYQLIDGE 56
Query: 403 KKALPVNKDRFISKMFLRGDSVIIV 477
K ++ + +F+RGDSV +V
Sbjct: 57 LK----SETKSSEMVFVRGDSVTLV 77
>gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 41.6 bits (96), Expect = 0.030
Identities = 24/86 (27%), Positives = 45/86 (52%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KK + + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERRTLGL 72
Query: 445 MFLRGDSVIIVLRNPK*SPNQSPCSS 522
+ LRG+ VI + P +S S
Sbjct: 73 VLLRGEEVISMTVEGPPPPEESRAKS 98
>ref|NP_915643.1| P0505D12.24 [Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 41.2 bits (95), Expect = 0.039
Identities = 21/68 (30%), Positives = 41/68 (60%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MA A EEE PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +
Sbjct: 1 MAAAAAAAAAEEEIAVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGD 58
Query: 358 VREMWTEI 381
V E+ T +
Sbjct: 59 VEEIVTTV 66
>ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 40.8 bits (94), Expect = 0.051
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MAD AG E PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +
Sbjct: 1 MADTEGAGTSSVSE----PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGD 54
Query: 358 VRE 366
V E
Sbjct: 55 VEE 57
>dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 40.4 bits (93), Expect = 0.066
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KK + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 72
Query: 445 MFLRGDSVIIVLRNPK*SPNQSPCSS 522
+ LRG+ VI + P +S S
Sbjct: 73 VLLRGEEVISMTVEGPPPPEESRAKS 98
>ref|NP_001032011.1| unknown protein [Arabidopsis thaliana]
ref|NP_199263.1| unknown protein [Arabidopsis thaliana]
dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
Length = 254
Score = 40.4 bits (93), Expect = 0.066
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KK + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 72
Query: 445 MFLRGDSVIIVLRNPK*SPNQSPCSS 522
+ LRG+ VI + P +S S
Sbjct: 73 VLLRGEEVISMTVEGPPPPEESRAKS 98
>ref|XP_770710.1| hypothetical protein GLP_680_47464_47838 [Giardia lamblia ATCC
50803]
gb|EAA40538.1| GLP_680_47464_47838 [Giardia lamblia ATCC 50803]
Length = 124
Score = 40.4 bits (93), Expect = 0.066
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
VL+ R+ + + G ++A+DRH N+V E W E + ++R L
Sbjct: 64 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 112
Query: 454 RGDSVIIVLRN 486
RGD+VI+V+ N
Sbjct: 113 RGDNVIMVVSN 123
>ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
gb|EAA69460.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 39.3 bits (90), Expect = 0.15
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +1
Query: 208 EEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIP- 384
EE + PL ++ + + N V + R +++L G++ A+D HCN+VL V E +
Sbjct: 6 EEPHHVSEPLDLVRLLL--NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDE 63
Query: 385 -------KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPC 516
KT K + L V FI K + + + P S + PC
Sbjct: 64 DDDDDELKTISRKSEMLFVRAGAFIDKEVAVAWNARLPVSYPVLSRSPHPC 114
>ref|NP_013543.1| Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p
and either Lsm1p or 8p): cytoplasmic Lsm1p complex
involved in mRNA decay; nuclear Lsm8p complex part of U6
snRNP and possibly involved in processing tRNA, snoRNA,
and rRNA; Lsm3p [Saccharomyces cerevisiae]
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)
Length = 89
Score = 39.3 bits (90), Expect = 0.15
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E ++ +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSE--- 58
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
+R +F+RGD+V ++
Sbjct: 59 ----SERRCEMVFIRGDTVTLI 76
>pir||T40786 probable SNRNP SM-like protein - fission yeast
(Schizosaccharomyces pombe)
Length = 83
Score = 39.3 bits (90), Expect = 0.15
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 412 LPVNKDRFISKMFLRG 459
L + + +F+RG
Sbjct: 68 LKTIRKHY-EMLFVRG 82
>ref|XP_753396.1| small nuclear ribonucleoprotein LSM3 [Aspergillus fumigatus Af293]
gb|EAL91358.1| small nuclear ribonucleoprotein (LSM3), putative [Aspergillus
fumigatus Af293]
Length = 83
Score = 39.3 bits (90), Expect = 0.15
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 357
MAD G E PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +
Sbjct: 1 MADTEDTGAGSVSE----PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGD 54
Query: 358 VRE 366
V E
Sbjct: 55 VEE 57
>ref|NP_849414.1| SMB [Arabidopsis thaliana]
ref|NP_193777.1| SMB [Arabidopsis thaliana]
ref|NP_001031682.1| SMB [Arabidopsis thaliana]
emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
Length = 257
Score = 38.9 bits (89), Expect = 0.19
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLP-PAKGKKINEEREDRRTLGL 71
Query: 445 MFLRGDSVI 471
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>ref|XP_523516.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Pan troglodytes]
Length = 135
Score = 38.5 bits (88), Expect = 0.25
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
++ + RN+++L GR+ +D+H NM+L +V E T I + ++ K I
Sbjct: 27 RIYVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQN-IPVPL 85
Query: 451 LRGDSVIIV 477
+RGD + +V
Sbjct: 86 VRGDGIFLV 94
>ref|XP_577512.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Rattus norvegicus]
Length = 134
Score = 38.5 bits (88), Expect = 0.25
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +1
Query: 247 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTEI-PKTGKGKKKALP 417
++++ Q+ + RN+++L GR+ +D+H NM+L + E M EI +T + K+
Sbjct: 20 LLTINLEEQICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIEIDEETYEEIDKSTK 79
Query: 418 VNKDRFISKMFLRGDSVI 471
N I +F++GD V+
Sbjct: 80 XN----IPMLFIQGDDVL 93
>gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var. neoformans
JEC21]
ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 95
Score = 38.5 bits (88), Expect = 0.25
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL ++ +++ +VLI R ++ + G + A+D H N+V+ E + T +G +
Sbjct: 12 PLDLVKLAL--GERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEG--QP 67
Query: 412 LPVNKDRFISKM-FLRGDSVIIV 477
LP +R ++M F+RGD VI++
Sbjct: 68 LPPRIERRTAEMLFVRGDGVILL 90
>ref|XP_476727.1| putative snRNP(small nuclear ribonucleoprotein associated protein)
[Oryza sativa (japonica cultivar-group)]
Length = 261
Score = 37.4 bits (85), Expect = 0.56
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P + K K + R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPS-KSSKTTGEREERRTLGL 71
Query: 445 MFLRGDSVIIVLRNPK*SPNQS 510
+ LRG+ V+ + P++S
Sbjct: 72 LLLRGEEVVSMTVEGPPPPDES 93
>emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
ref|NP_988268.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
Length = 72
Score = 37.0 bits (84), Expect = 0.73
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL L S+ NT V + ++ K + GR++A+D H N+ LEN K ++K
Sbjct: 7 PLDALGKSI--NTNVTVYLKDGKVVKGRLKAYDLHMNVALENA--------KIENDEEKE 56
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
P+ + +RGD+V+ V
Sbjct: 57 FPM--------LVVRGDNVLYV 70
>dbj|BAB65770.1| 79aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus
tokodaii str. 7]
ref|NP_376661.1| hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii
str. 7]
Length = 79
Score = 37.0 bits (84), Expect = 0.73
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
VL+ + +K + G ++++D H N+VLEN E+ ++ R + + +
Sbjct: 21 VLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSD--------------GSTRKVGTIII 66
Query: 454 RGDSVIIV 477
RGD+VI+V
Sbjct: 67 RGDNVILV 74
>ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 36.2 bits (82), Expect = 1.2
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ + ++++ ++G + AFDRH N+VL + +E + KK P R +
Sbjct: 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEY-------RRVKKGEEPKELKRSLGL 58
Query: 445 MFLRGDSVI 471
+ LRG++++
Sbjct: 59 IMLRGENIV 67
>gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 36.2 bits (82), Expect = 1.2
Identities = 23/94 (24%), Positives = 43/94 (45%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMF 450
+V + ++ + L+G AFD+H N+VL E PKT KG+ + R + +
Sbjct: 14 RVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKT-KGEPER---QTKRILGLVI 69
Query: 451 LRGDSVIIVLRNPK*SPNQSPCSSYALSLGSRNP 552
+RG++++ + S + A G+ P
Sbjct: 70 IRGENIVSINAEAPPSQQAKKIDTSATGPGTAQP 103
>ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum]
Length = 121
Score = 36.2 bits (82), Expect = 1.2
Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Frame = +1
Query: 181 ADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 360
A+++Q G ++ PL+++ + N V++ + +K+ G +R FD + NMVL++V
Sbjct: 12 ANKSQGGSNQKGGNIILPLALIDKCIGNRIYVVM--KGDKEFSGVLRGFDEYVNMVLDDV 69
Query: 361 REMWTEIPKT----GKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
+E + + G K K + VN+ + + L G++V +++
Sbjct: 70 QEYGFKADEEDISGGNKKLKRVMVNR---LETILLSGNNVAMLV 110
>gb|AAH91343.1| Hypothetical protein LOC295283 [Rattus norvegicus]
ref|NP_001020151.1| hypothetical protein LOC295283 [Rattus norvegicus]
Length = 495
Score = 35.8 bits (81), Expect = 1.6
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = +1
Query: 16 GVATTPCLTPPLKPQKGEEKHAQKFRGFHL-----LERTNTTRRPERLATGAEK-EGGGS 177
G+ P PP + + G E+ A +F G L L R ++T PE AEK GGG
Sbjct: 250 GLVAPPQPVPPAEGRPGLERLAAEFNGLTLTGRPRLSRRHSTEGPEDPPPWAEKVTGGGP 309
Query: 178 MADENQAGKKEEEEFSTG 231
++ N A + +E +G
Sbjct: 310 LSRRNTAPEAQESGLPSG 327
>gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
Length = 79
Score = 35.8 bits (81), Expect = 1.6
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
VL+ + K + G ++++D H N+VLEN E+ + R + + +
Sbjct: 23 VLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGTIVI 68
Query: 454 RGDSVIIV 477
RGD+VI+V
Sbjct: 69 RGDNVILV 76
>ref|ZP_01153713.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gb|EAR49286.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
Length = 72
Score = 35.8 bits (81), Expect = 1.6
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL +L S+ N+ V++ ++ + G ++ +D H N+VLEN E+ G +K
Sbjct: 6 PLDILNESL--NSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEI-----AEGTARK-- 56
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
I + +RGD+V+ +
Sbjct: 57 --------IGAVIVRGDNVVYI 70
>ref|XP_958507.1| hypothetical protein [Neurospora crassa N150]
ref|XP_329871.1| hypothetical protein [Neurospora crassa]
gb|EAA29271.1| hypothetical protein [Neurospora crassa]
Length = 168
Score = 35.4 bits (80), Expect = 2.1
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 366
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
Length = 155
Score = 35.4 bits (80), Expect = 2.1
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
V + ++N+K +G + AFD++ N+VL + E + GK K + R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRMTL---GKDKNR---TEVKRTLGFVLL 69
Query: 454 RGDSVIIVLRNPK*SPNQSPCSSYALSLGSRNP 552
RG++++ SP P Y + G P
Sbjct: 70 RGENIVSFTAK---SPVNVPQFGYPMGPGKATP 99
>gb|AAF42472.1| dentin sialophosphoprotein precursor [Homo sapiens]
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin
phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
sialoprotein (DSP)]
Length = 1253
Score = 35.4 bits (80), Expect = 2.1
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 46 PLKPQKGEEKHAQKFRGFHLLERTNTTRRPERLATGAEKEGGGSMADENQAGKKEEEE 219
P+ K E+H +K HLL R+N + + E A+G KE G + E G++E +
Sbjct: 17 PVPQSKPLERHVEKSMNLHLLARSNVSVQDELNASGTIKE-SGVLVHEGDRGRQENTQ 73
>ref|NP_055023.2| dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 35.4 bits (80), Expect = 2.1
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 46 PLKPQKGEEKHAQKFRGFHLLERTNTTRRPERLATGAEKEGGGSMADENQAGKKEEEE 219
P+ K E+H +K HLL R+N + + E A+G KE G + E G++E +
Sbjct: 17 PVPQSKPLERHVEKSMNLHLLARSNVSVQDELNASGTIKE-SGVLVHEGDRGRQENTQ 73
>ref|YP_504465.1| Like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gb|ABD42746.1| Like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
Length = 80
Score = 35.4 bits (80), Expect = 2.1
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +1
Query: 244 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVN 423
++ V N VLI+ + +++ G ++ +D H N+VL+ E +
Sbjct: 13 ILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEE---------------IVQG 57
Query: 424 KDRFISKMFLRGDSVIIVLRNPK 492
+ + I + +RGD+VI + NP+
Sbjct: 58 QAQSIGTLIIRGDNVIYISPNPQ 80
>dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 35.4 bits (80), Expect = 2.1
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = +1
Query: 223 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGK 402
+T P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 11 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 61
Query: 403 KKALPVNKDRFISKMFLRGDSVIIV 477
K + ++ +RGD+VI V
Sbjct: 62 NKGV-------FDRILVRGDNVIFV 79
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein
ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 83
Score = 35.4 bits (80), Expect = 2.1
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = +1
Query: 223 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGK 402
+T P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 57
Query: 403 KKALPVNKDRFISKMFLRGDSVIIV 477
K + ++ +RGD+VI V
Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>ref|XP_580309.2| PREDICTED: similar to cytosolic phosphoprotein DP58 [Bos taurus]
Length = 458
Score = 35.0 bits (79), Expect = 2.8
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Frame = +1
Query: 16 GVATTPCLTPPLKPQKGEEKHAQKFRGFHL-----LERTNTTRRPERLATGAEK-EGGGS 177
G+ P PP + + G E+ +F G L L R ++T PE AEK GGG
Sbjct: 215 GLVAPPQPVPPAEGRPGFERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPPWAEKVTGGGP 274
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNN 297
++ N A + +E +GP S L + V ++ N
Sbjct: 275 LSRRNTAPEAQE----SGPSSGLRQKLSRMESVELDTPGN 310
>ref|NP_918348.1| dnaJ-like protein [Oryza sativa (japonica cultivar-group)]
dbj|BAB89081.1| dnaJ-like protein [Oryza sativa (japonica cultivar-group)]
Length = 380
Score = 35.0 bits (79), Expect = 2.8
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +1
Query: 145 ATGAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA 324
A+ E G + + Q GKK+EE+ S G S ++ QV + R+ ++LG
Sbjct: 81 ASAEEATGSDGLRERKQKGKKKEEDESAGERSYTSEQLEVVRQVKKHTRDYYQILG---- 136
Query: 325 FDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRF--ISKMF 450
++ C +E+VR+ + ++ K P +D F +SK F
Sbjct: 137 LEKDC--TVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAF 178
>gb|EAR88228.1| NLI interacting factor-like phosphatase family protein [Tetrahymena
thermophila SB210]
Length = 1313
Score = 35.0 bits (79), Expect = 2.8
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +1
Query: 106 LERTNTTRRPERLATGAEKEGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLI- 282
++ T+ P++++T EGGG+ ++ + +K + E STG ++ ++ K N+ VL+
Sbjct: 524 IQAAKQTKNPKQIST----EGGGAYSENDTYVQKMKGEQSTGTMTSSGITSKKNSLVLVK 579
Query: 283 ---NCRNNKKLLGRVRAFDRHCNMVLENVREM 369
RNN K++ R+ + EN + M
Sbjct: 580 QNNRIRNNPKVI-RINQIQNMNELFPENSQNM 610
>gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
Length = 198
Score = 35.0 bits (79), Expect = 2.8
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ ++ ++L+G +AFDRH N++L + E KT K K + R +
Sbjct: 14 NYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRALGL 70
Query: 445 MFLRGDSVI 471
+ LRG+ V+
Sbjct: 71 VLLRGEHVV 79
>ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 35.0 bits (79), Expect = 2.8
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Frame = +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
+++Q G ++ PL+++ + N V++ + +K+ G +R FD + NMVL++V+
Sbjct: 7 NKSQGGSNQKGGNIILPLALIDKCIGNRIYVVM--KGDKEFSGVLRGFDEYVNMVLDDVQ 64
Query: 364 EMW----TEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
E E G K K + VN+ + + L G++V +++ P PN
Sbjct: 65 EYGFKADEEDMSGGNKKLKRVMVNR---LETILLSGNNVAMLV--PGGDPN 110
>ref|XP_746259.1| Plasmodium chabaudi chabaudi small nuclear ribonucleoprotein
[Plasmodium chabaudi chabaudi]
emb|CAH78091.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi]
Length = 88
Score = 35.0 bits (79), Expect = 2.8
Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNT--QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
K+ ++ T P++ + N T Q+ + + + ++ G++ FD + NMVL+ +E+
Sbjct: 6 KKLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESKEI--- 62
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
++ N + + K+ L+GD++ +++
Sbjct: 63 ----------SIKKNTKKELGKILLKGDTITLIM 86
>ref|YP_448199.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
Length = 81
Score = 35.0 bits (79), Expect = 2.8
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 369
PL L ++ N+QVLI + K+ G +++FD H N+VL + E+
Sbjct: 13 PLDALGQAL--NSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI 56
>gb|AAU38425.1| unknown [Mannheimia succiniciproducens MBEL55E]
ref|YP_089010.1| hypothetical protein MS1818 [Mannheimia succiniciproducens MBEL55E]
Length = 215
Score = 34.7 bits (78), Expect = 3.6
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 52 KPQKGEEKHAQKFRGFHLLERTNTTRRPERLATGAEKEGGGSMADENQAGKKEEEEFSTG 231
K Q HA KF G HL + T +P + G+++++++ G K+ F +
Sbjct: 66 KDQAVGTNHAGKFHGTHLTKNNPATGKPITCVS-----CHGNISEDHRKGAKDVMRFESD 120
Query: 232 PLSV--LMMSVKNNTQVLINCRNNKKLLGRVRAFDRH 336
S M SV+ QV +C L ++ A D H
Sbjct: 121 IFSTEQPMYSVQEQNQVCFSCHKPDDLRKKLWAHDVH 157
>ref|XP_392871.2| PREDICTED: similar to ENSANGP00000007148 [Apis mellifera]
Length = 438
Score = 34.7 bits (78), Expect = 3.6
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N +V I ++++ +G +AFD+H N++L + E PK K ++ R +
Sbjct: 235 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EDKRVLGF 290
Query: 445 MFLRGDSVI 471
+ LRG++++
Sbjct: 291 VLLRGENIV 299
>gb|EAA04750.3| ENSANGP00000018479 [Anopheles gambiae str. PEST]
ref|XP_308499.2| ENSANGP00000018479 [Anopheles gambiae str. PEST]
Length = 245
Score = 34.7 bits (78), Expect = 3.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 229 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT 375
GPL L ++ +V ++ R K + G V FD+H N+ L +V E WT
Sbjct: 121 GPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETWT 173
>ref|XP_677480.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
ref|XP_726082.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii str.
17XNL]
gb|EAA17647.1| small nuclear ribonucleoprotein homolog [Plasmodium yoelii yoelii]
emb|CAH98978.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 88
Score = 34.7 bits (78), Expect = 3.6
Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNT--QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
K+ ++ T P++ + N T Q+ + + + ++ G++ FD + NMVL+ +E+
Sbjct: 6 KKLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESKEI--- 62
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
++ N + + K+ L+GD++ +++
Sbjct: 63 ----------SVKKNTKKELGKILLKGDTITLIM 86
>ref|XP_533036.2| PREDICTED: similar to cytosolic phosphoprotein DP58 [Canis
familiaris]
Length = 482
Score = 34.3 bits (77), Expect = 4.7
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Frame = +1
Query: 16 GVATTPCLTPPLKPQKGEEKHAQKFRGFHL-----LERTNTTRRPERLATGAEK-EGGGS 177
G+ P PP + + G E+ +F G L L R ++T PE AEK GGG
Sbjct: 237 GLVAPPQPVPPAEGRPGIERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPPWAEKVTGGGP 296
Query: 178 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNN 297
++ N A + +E +GP S L + V ++ N
Sbjct: 297 LSRRNTAPEAQE----SGPPSGLRQKLSRMEPVELDTPGN 332
>ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 34.3 bits (77), Expect = 4.7
Identities = 23/93 (24%), Positives = 43/93 (46%)
Frame = +1
Query: 274 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFL 453
V + ++N+K +G + A+D++ N+VL + E + GK K + R + + L
Sbjct: 16 VRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTL---GKDKNR---TEVKRTLGFVLL 69
Query: 454 RGDSVIIVLRNPK*SPNQSPCSSYALSLGSRNP 552
RG++++ SP P Y + G P
Sbjct: 70 RGENIVSFTAK---SPVNVPQLGYPMGPGKATP 99
>ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoeba histolytica HM-1:IMSS]
gb|EAL47852.1| small nuclear ribonucleoprotein F, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 205
Score = 34.3 bits (77), Expect = 4.7
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N + + + +G+ AFD++ NM+L E T I K + +K+ +R +
Sbjct: 13 NYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTREEKEI-----ERSLGM 67
Query: 445 MFLRGDSV 468
M LRGD +
Sbjct: 68 MLLRGDCI 75
>gb|AAN37024.1| small nuclear ribonuclear protein, putative [Plasmodium falciparum
3D7]
ref|NP_702300.1| small nuclear ribonuclear protein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 34.3 bits (77), Expect = 4.7
Identities = 28/97 (28%), Positives = 49/97 (50%)
Frame = +1
Query: 235 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKAL 414
L + +M +++ I + +K+++G++ FD + NMVLE+V TE KK
Sbjct: 11 LPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDV----TEYTYANNVKK--- 63
Query: 415 PVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCSSY 525
VNK I K+ L G ++ I++ P +P + Y
Sbjct: 64 -VNK---IKKLLLNGLNITIMV------PGGTPVNYY 90
>gb|AAS56109.1| YER146W [Saccharomyces cerevisiae]
ref|NP_011073.1| Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p
and either Lsm1p or 8p): cytoplasmic Lsm1p complex
involved in mRNA decay; nuclear Lsm8p complex part of U6
snRNP and possibly involved in processing tRNA, snoRNA,
and rRNA; Lsm5p [Saccharomyces cerevisiae]
gb|AAB64673.1| Yer146wp [Saccharomyces cerevisiae]
sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5
Length = 93
Score = 34.3 bits (77), Expect = 4.7
Identities = 24/93 (25%), Positives = 49/93 (52%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL V+ ++ N +VLI ++N++ G + FD N++LE+ E W P+ +K
Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPEDESRNEKV 64
Query: 412 LPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQS 510
+ + +M L G+++ I++ K +P ++
Sbjct: 65 M-----QHHGRMLLSGNNIAILVPGGKKTPTEA 92
>gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
ref|NP_558846.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 34.3 bits (77), Expect = 4.7
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 369
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>emb|CAI75598.1| small nuclear ribonucleoprotein (E), putative [Theileria annulata]
ref|XP_763406.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
ref|XP_955074.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gb|EAN31123.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 91
Score = 34.3 bits (77), Expect = 4.7
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 202 KKEEEEFSTGPLSVLMMSVKNNTQVLINC--RNNKKLLGRVRAFDRHCNMVLENVREMWT 375
K + ++ T P++ + T+V I + N K+ G +R FD + NMVL+N E+
Sbjct: 5 KDKLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHV 64
Query: 376 EIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 477
KK V KD + ++ L+GD + ++
Sbjct: 65 --------KKN---VKKD--VGRILLKGDCMTLI 85
>pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
Length = 81
Score = 34.3 bits (77), Expect = 4.7
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 369
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gb|EAA11463.2| ENSANGP00000007148 [Anopheles gambiae str. PEST]
ref|XP_315523.2| ENSANGP00000007148 [Anopheles gambiae str. PEST]
Length = 202
Score = 33.9 bits (76), Expect = 6.2
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKD-RFIS 441
N +V I ++++ +G +AFD+H N++L + E PK K LP ++ R +
Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTK-----LPEREEKRVLG 68
Query: 442 KMFLRGDSVI 471
+ LRG +++
Sbjct: 69 FVLLRGGNIV 78
>gb|AAW45921.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_567438.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gb|EAL18439.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 195
Score = 33.9 bits (76), Expect = 6.2
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 280 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGK--GKKKALPVNKDRFISKMFL 453
+ + + L+G++ A+D+H N VL E T K K + A + R + + L
Sbjct: 11 VTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKKAKASSNEPAPTTQQKRTLGLVIL 70
Query: 454 RGDSVIIV 477
RG++++ V
Sbjct: 71 RGETIVSV 78
>emb|CAE71635.1| Hypothetical protein CBG18602 [Caenorhabditis briggsae]
Length = 91
Score = 33.9 bits (76), Expect = 6.2
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 223 STGPLSVLMMSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTG 393
ST P ++L + + + +++ + +N+K+++G + FD + NMVLE+V E T
Sbjct: 6 STNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDV----VEYENTA 61
Query: 394 KGKK 405
+GK+
Sbjct: 62 EGKR 65
>emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein
ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM 1728]
Length = 83
Score = 33.9 bits (76), Expect = 6.2
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ K
Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEII-------NGENKG 60
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
+ ++ +RGD+VI V
Sbjct: 61 V-------YDRVLVRGDNVIFV 75
>gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein
Length = 72
Score = 33.9 bits (76), Expect = 6.2
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK- 56
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
S + +RGD+V+ V
Sbjct: 57 --------FSSVVIRGDNVVYV 70
>ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein
gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
Length = 72
Score = 33.9 bits (76), Expect = 6.2
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +1
Query: 232 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56
Query: 412 LPVNKDRFISKMFLRGDSVIIV 477
S + +RGD+V+ V
Sbjct: 57 --------FSSVVIRGDNVVYV 70
>ref|ZP_00996344.1| putative transmembrane efflux protein [Janibacter sp. HTCC2649]
gb|EAP98292.1| putative transmembrane efflux protein [Janibacter sp. HTCC2649]
Length = 441
Score = 33.5 bits (75), Expect = 8.1
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Frame = -3
Query: 539 PRERA*LLQGDWLGDHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHI-- 366
PRE A +L +G G L+ P R + MNL G LPL V+G + HI
Sbjct: 287 PREHAWVLAAFGVGGAIGSLAMASLRMPRRYLTWMNLLWGVGS---LPLAVIGYAGHIWI 343
Query: 365 --------SRTFSSTMLQWRSKARTRPSSFLLLR 288
TFS+ M+ W + + R L+ R
Sbjct: 344 VIAAAFVLGMTFSAPMVIWGTLLQRRVPPHLMGR 377
>ref|XP_786252.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Strongylocentrotus purpuratus]
Length = 204
Score = 33.5 bits (75), Expect = 8.1
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ +N ++ + +G AFD+H N+VL + E K+ K K + R +
Sbjct: 14 NYRMRVNLQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRAKSAKAPAK----EEKRVLGL 69
Query: 445 MFLRGDSVI 471
+ LRG+ ++
Sbjct: 70 VLLRGEHLV 78
>ref|XP_415936.1| PREDICTED: similar to kinesin family member 21A; NY-REN-62 antigen,
partial [Gallus gallus]
Length = 1668
Score = 33.5 bits (75), Expect = 8.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 103 LLERTNTTRRPERLATGAEK---EGGGSMADENQAGKKEEEEFSTGPLSVLMMSVKN 264
L +R TRR E+L+ EK +GGGS AD N EE E T + + S+ +
Sbjct: 980 LTQREELTRRREKLSKKREKLIKDGGGSEADRNVQNINEEMESLTANIDYINDSISD 1036
>ref|XP_500142.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG84074.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 144
Score = 33.5 bits (75), Expect = 8.1
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 271 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKK 405
+V++ R +K G +R+FD+ N+VL++ E + +P+ G++
Sbjct: 27 KVVVTLRGGRKFFGILRSFDQFANLVLQDTYEKYFAVPEKVYGEE 71
>ref|XP_788645.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Strongylocentrotus purpuratus]
Length = 208
Score = 33.5 bits (75), Expect = 8.1
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 265 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISK 444
N ++ +N ++ + +G AFD+H N+VL + E K+ K K + R +
Sbjct: 18 NYRMRVNLQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRAKSAKAPAK----EEKRVLGL 73
Query: 445 MFLRGDSVI 471
+ LRG+ ++
Sbjct: 74 VLLRGEHLV 82
>emb|CAD52624.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
ref|NP_705387.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 93
Score = 33.5 bits (75), Expect = 8.1
Identities = 19/94 (20%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +1
Query: 205 KEEEEFSTGPLSVLMMSVKNNT--QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 378
K+ ++ T P++ + N T Q+ + + + ++ G + FD + NMVL+ +E+
Sbjct: 6 KKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEI--- 62
Query: 379 IPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 480
++ N + + K+ L+GD++ +++
Sbjct: 63 ----------SVKKNTKKELGKILLKGDTITLIM 86
>ref|XP_710394.1| putative spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
ref|XP_710386.1| putative spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
gb|EAK91132.1| potential spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
gb|EAK91124.1| potential spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
Length = 110
Score = 33.5 bits (75), Expect = 8.1
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +1
Query: 250 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGK-KKALP--- 417
MS N ++ I +N+ LG + +FD+H N+VL + E + I K + KK P
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEE--SRITKKSYSQLKKHTPNVE 58
Query: 418 -VNKDRFISKMFLRGDSVI 471
V R + + LRGD V+
Sbjct: 59 LVYDKRNLGLIILRGDQVV 77
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,561,311,510
Number of Sequences: 3454138
Number of extensions: 32011810
Number of successful extensions: 94731
Number of sequences better than 10.0: 171
Number of HSP's better than 10.0 without gapping: 90347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94516
length of database: 1,185,965,366
effective HSP length: 127
effective length of database: 747,289,840
effective search space used: 88180201120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)