BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 ... 186 8e-46
ref|NP_566107.1| unknown protein [Arabidopsis thaliana] >gi... 182 9e-45
gb|AAM64733.1| small nuclear ribonucleoprotein-like protein... 182 9e-45
ref|NP_850477.1| unknown protein [Arabidopsis thaliana] >gi... 182 9e-45
ref|XP_397475.2| PREDICTED: similar to CG1249-PA [Apis mell... 171 3e-41
gb|EAA13684.1| ENSANGP00000002741 [Anopheles gambiae str. P... 170 4e-41
gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus lae... 169 6e-41
ref|NP_001017582.1| hypothetical protein LOC550244 [Danio r... 169 6e-41
gb|AAH77664.1| MGC89748 protein [Xenopus tropicalis] >gi|52... 169 6e-41
ref|NP_081219.1| small nuclear ribonucleoprotein D2 [Mus mu... 169 6e-41
gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypepti... 169 6e-41
ref|NP_649645.1| CG1249-PA [Drosophila melanogaster] >gi|17... 169 8e-41
gb|EAL28046.1| GA11659-PA [Drosophila pseudoobscura] 169 8e-41
gb|AAM94277.1| small nuclear ribonucleoprotein D2-like prot... 168 1e-40
dbj|BAC32551.1| unnamed protein product [Mus musculus] 168 1e-40
ref|XP_576676.1| PREDICTED: similar to small nuclear ribonu... 166 9e-40
ref|XP_638255.1| hypothetical protein DDB0218705 [Dictyoste... 161 2e-38
ref|XP_619909.1| PREDICTED: similar to small nuclear ribonu... 160 4e-38
ref|XP_910243.1| PREDICTED: similar to small nuclear ribonu... 160 4e-38
gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-... 160 5e-38
emb|CAE75361.1| Hypothetical protein CBG23345 [Caenorhabdit... 160 5e-38
ref|NP_506004.1| Small Nuclear Ribonucleoprotein family mem... 159 1e-37
ref|XP_484260.1| PREDICTED: similar to small nuclear ribonu... 158 1e-37
dbj|BAD88260.1| putative small nuclear ribonucleoprotein [O... 146 6e-34
emb|CAG02856.1| unnamed protein product [Tetraodon nigrovir... 145 1e-33
ref|XP_061427.1| PREDICTED: similar to small nuclear ribonu... 143 5e-33
ref|XP_942442.1| PREDICTED: similar to small nuclear ribonu... 140 4e-32
ref|XP_539112.1| PREDICTED: similar to small nuclear ribonu... 140 5e-32
gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptoco... 138 2e-31
ref|XP_521555.1| PREDICTED: similar to small nuclear ribonu... 138 2e-31
gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus ... 138 2e-31
ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago m... 135 1e-30
emb|CAB16363.1| SPAC2C4.03c [Schizosaccharomyces pombe] >gi... 132 1e-29
emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes v... 130 6e-29
ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella... 129 7e-29
ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspe... 127 4e-28
dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae] 124 3e-27
ref|XP_742706.1| hypothetical protein PC000715.02.0 [Plasmo... 124 4e-27
ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptospo... 123 5e-27
ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodiu... 123 5e-27
ref|NP_473101.1| small nuclear ribonucleoprotein, putative ... 123 7e-27
ref|XP_505089.1| hypothetical protein [Yarrowia lipolytica]... 123 7e-27
ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodiu... 123 7e-27
gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210] 122 1e-26
ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theile... 120 3e-26
emb|CAI74255.1| small nuclear ribonucleoprotein, putative [... 118 2e-25
emb|CAG88765.1| unnamed protein product [Debaryomyces hanse... 114 4e-24
emb|CAC28820.1| probable small nuclear ribonucleoprotein ch... 107 3e-22
ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Ent... 105 1e-21
ref|NP_013377.1| Core Sm protein Sm D2; part of heterohepta... 102 9e-21
ref|NP_914299.1| P0458E05.28 [Oryza sativa (japonica cultiv... 102 2e-20
gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 1... 101 2e-20
emb|CAG59111.1| unnamed protein product [Candida glabrata C... 100 5e-20
gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895] >gi|45... 100 8e-20
ref|XP_453476.1| unnamed protein product [Kluyveromyces lac... 97 7e-19
ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus... 77 7e-13
gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans] 75 2e-12
ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Enceph... 70 9e-11
gb|AAK68737.1| small nuclear ribonucleoprotein-like protein... 69 2e-10
ref|XP_945567.1| PREDICTED: similar to small nuclear ribonu... 67 6e-10
ref|XP_548710.2| PREDICTED: similar to serine/threonine kin... 64 4e-09
emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leish... 63 8e-09
emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guil... 63 1e-08
gb|AAH14600.1| Unknown (protein for MGC:26736) [Homo sapiens] 61 3e-08
ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Tryp... 60 7e-08
ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Tryp... 60 7e-08
emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, p... 58 3e-07
gb|AAG00462.1| Sm-D2 [Trypanosoma brucei] 58 3e-07
gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypan... 58 3e-07
ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptospo... 55 2e-06
ref|NP_502579.1| LSM Sm-like protein family member (lsm-3) ... 54 5e-06
emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabdit... 54 5e-06
ref|XP_500743.1| hypothetical protein [Yarrowia lipolytica]... 54 7e-06
ref|XP_223423.3| PREDICTED: Kruppel-like factor 3 [Rattus n... 54 7e-06
ref|XP_657435.1| U6 snRNA-associated Sm-like protein [Entam... 52 2e-05
ref|XP_896849.1| PREDICTED: similar to CG1249-PA [Mus muscu... 52 2e-05
gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura] 51 4e-05
ref|NP_704356.1| ribonucleoprotein, putative [Plasmodium fa... 50 7e-05
ref|NP_732931.1| CG31184-PA [Drosophila melanogaster] >gi|2... 50 7e-05
gb|AAN71307.1| RE11655p [Drosophila melanogaster] 50 7e-05
ref|XP_786272.1| PREDICTED: similar to LSM3 homolog, U6 sma... 50 7e-05
ref|NP_173542.1| unknown protein [Arabidopsis thaliana] >gi... 50 9e-05
gb|EAS07202.1| Sm protein [Tetrahymena thermophila SB210] 50 9e-05
emb|CAF94178.1| unnamed protein product [Tetraodon nigrovir... 49 1e-04
ref|NP_177812.1| unknown protein [Arabidopsis thaliana] >gi... 49 2e-04
ref|NP_055278.1| Lsm3 protein [Homo sapiens] >gi|13385806|r... 49 2e-04
ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyoste... 49 2e-04
ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated ... 49 2e-04
gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear c... 48 3e-04
dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza... 48 3e-04
emb|CAB42366.2| SPBC9B6.05c [Schizosaccharomyces pombe] >gi... 48 4e-04
gb|EAA00883.2| ENSANGP00000011793 [Anopheles gambiae str. P... 47 5e-04
ref|XP_851528.1| PREDICTED: similar to LSM3 homolog, U6 sma... 47 5e-04
ref|XP_636207.1| hypothetical protein DDB0188426 [Dictyoste... 47 5e-04
ref|XP_534071.1| PREDICTED: similar to LSM3 homolog, U6 sma... 47 6e-04
ref|XP_764675.1| hypothetical protein TP02_0106 [Theileria ... 47 6e-04
ref|XP_849902.1| PREDICTED: similar to LSM3 homolog, U6 sma... 45 0.002
emb|CAG87742.1| unnamed protein product [Debaryomyces hanse... 45 0.003
ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoeli... 44 0.005
ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago m... 43 0.009
emb|CAG89843.1| unnamed protein product [Debaryomyces hanse... 43 0.012
gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) ... 42 0.015
ref|XP_766985.1| hypothetical protein GLP_122_3813_3433 [Gi... 42 0.015
ref|XP_942368.1| PREDICTED: similar to LSM3 homolog, U6 sma... 42 0.015
ref|XP_934007.1| PREDICTED: similar to LSM3 homolog, U6 sma... 42 0.015
pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Pro... 42 0.015
ref|XP_451766.1| unnamed protein product [Kluyveromyces lac... 42 0.020
gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895] >gi|45... 42 0.026
sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (s... 41 0.034
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana] 40 0.057
ref|XP_770710.1| hypothetical protein GLP_680_47464_47838 [... 40 0.057
dbj|BAD43836.1| unknown protein [Arabidopsis thaliana] 39 0.13
ref|NP_001032011.1| unknown protein [Arabidopsis thaliana] ... 39 0.13
gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neof... 39 0.17
ref|NP_013543.1| Lsm (Like Sm) protein; part of heterohepta... 39 0.17
pir||T40786 probable SNRNP SM-like protein - fission yeast ... 39 0.17
ref|NP_849414.1| SMB [Arabidopsis thaliana] >gi|15237095|re... 39 0.17
ref|XP_577512.1| PREDICTED: similar to LSM3 homolog, U6 sma... 38 0.28
ref|XP_523516.1| PREDICTED: similar to U6 snRNA-associated ... 38 0.28
ref|NP_915643.1| P0505D12.24 [Oryza sativa (japonica cultiv... 38 0.37
ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptospo... 37 0.49
ref|XP_753396.1| small nuclear ribonucleoprotein LSM3 [Aspe... 37 0.49
ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus... 37 0.49
emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein... 37 0.63
dbj|BAB65770.1| 79aa long hypothetical small nuclear ribonu... 37 0.63
ref|XP_476727.1| putative snRNP(small nuclear ribonucleopro... 37 0.83
ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella... 37 0.83
gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210] 36 1.4
gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus a... 36 1.4
ref|ZP_01153713.1| Like-Sm ribonucleoprotein, core [Methano... 36 1.4
gb|AAW72075.1| NADH dehydrogenase subunit 2 [Scelotes anguina] 36 1.4
ref|YP_504465.1| Like-Sm ribonucleoprotein, core [Methanosp... 35 1.8
dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplas... 35 1.8
sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein >gi|135... 35 1.8
gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum] 35 1.8
ref|XP_958507.1| hypothetical protein [Neurospora crassa N1... 35 1.8
ref|YP_448199.1| putative snRNP Sm-like protein [Methanosph... 35 2.4
ref|XP_392871.2| PREDICTED: similar to ENSANGP00000007148 [... 35 2.4
gb|EAA04750.3| ENSANGP00000018479 [Anopheles gambiae str. P... 35 3.1
ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [... 34 4.1
gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-... 34 4.1
pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum S... 34 4.1
gb|AAW45921.1| conserved hypothetical protein [Cryptococcus... 34 4.1
ref|XP_523884.1| PREDICTED: similar to Transcription factor... 34 4.1
gb|EAA11463.2| ENSANGP00000007148 [Anopheles gambiae str. P... 34 4.1
gb|AAN37024.1| small nuclear ribonuclear protein, putative ... 34 5.4
ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. ... 34 5.4
emb|CAE71635.1| Hypothetical protein CBG18602 [Caenorhabdit... 34 5.4
emb|CAC12364.1| small nuclear ribonucleoprotein related pro... 34 5.4
gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A] ... 34 5.4
ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosa... 34 5.4
ref|XP_500142.1| hypothetical protein [Yarrowia lipolytica]... 34 5.4
ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoe... 34 5.4
ref|XP_786252.1| PREDICTED: similar to Small nuclear ribonu... 33 7.0
ref|XP_788645.1| PREDICTED: similar to Small nuclear ribonu... 33 7.0
ref|XP_710394.1| putative spliceosomal snRNA Sm core bindin... 33 9.2
ref|NP_506870.1| LSM Sm-like protein family member (lsm-5) ... 33 9.2
gb|AAS56109.1| YER146W [Saccharomyces cerevisiae] >gi|63209... 33 9.2
ref|XP_746259.1| Plasmodium chabaudi chabaudi small nuclear... 33 9.2
gb|EAA06779.3| ENSANGP00000001657 [Anopheles gambiae str. P... 33 9.2
gb|AAR10110.1| similar to Drosophila melanogaster SmB [Dros... 33 9.2
ref|XP_502814.1| hypothetical protein [Yarrowia lipolytica]... 33 9.2
ref|NP_476921.1| Small ribonucleoprotein particle protein B... 33 9.2
gb|EAL34232.1| GA18820-PA [Drosophila pseudoobscura] 33 9.2
ref|XP_607245.2| PREDICTED: similar to Amiloride-sensitive ... 33 9.2
>gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica
cultivar-group)]
Length = 105
Score = 186 bits (471), Expect = 8e-46
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 15 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 74
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 75 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>ref|NP_566107.1| unknown protein [Arabidopsis thaliana]
gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 182 bits (462), Expect = 9e-45
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 78
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 79 KKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 105
Score = 182 bits (462), Expect = 9e-45
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 15 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 74
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 75 KKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105
>ref|NP_850477.1| unknown protein [Arabidopsis thaliana]
ref|NP_973710.1| unknown protein [Arabidopsis thaliana]
ref|NP_567134.2| unknown protein [Arabidopsis thaliana]
emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
Length = 108
Score = 182 bits (462), Expect = 9e-45
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 18 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 77
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 78 KKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108
>ref|XP_397475.2| PREDICTED: similar to CG1249-PA [Apis mellifera]
Length = 120
Score = 171 bits (432), Expect = 3e-41
Identities = 81/90 (90%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
>gb|EAA13684.1| ENSANGP00000002741 [Anopheles gambiae str. PEST]
ref|XP_318388.1| ENSANGP00000002741 [Anopheles gambiae str. PEST]
Length = 118
Score = 170 bits (431), Expect = 4e-41
Identities = 80/91 (87%), Positives = 87/91 (95%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 22 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKG 81
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 82 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 112
>gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 169 bits (429), Expect = 6e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|NP_001017582.1| hypothetical protein LOC550244 [Danio rerio]
ref|XP_699983.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Danio
rerio]
ref|XP_699955.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Danio
rerio]
gb|AAH93003.1| Hypothetical protein LOC550244 [Danio rerio]
Length = 118
Score = 169 bits (429), Expect = 6e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gb|AAH77664.1| MGC89748 protein [Xenopus tropicalis]
ref|NP_001005128.1| MGC89748 protein [Xenopus tropicalis]
emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
tropicalis]
Length = 118
Score = 169 bits (429), Expect = 6e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|NP_081219.1| small nuclear ribonucleoprotein D2 [Mus musculus]
ref|XP_512755.1| PREDICTED: hypothetical protein XP_512755 [Pan troglodytes]
gb|AAH00486.1| Small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
gb|AAH01930.1| Small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
ref|NP_808210.1| small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
ref|NP_004588.1| small nuclear ribonucleoprotein polypeptide D2 [Homo sapiens]
gb|AAI02878.1| Hypothetical protein LOC514932 [Bos taurus]
dbj|BAC40147.1| unnamed protein product [Mus musculus]
dbj|BAB25006.1| unnamed protein product [Mus musculus]
ref|XP_214847.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
D2 [Rattus norvegicus]
gb|AAD22673.1| SMD2_HUMAN; SNRNP CORE PROTEIN D2; SM-D2 [Homo sapiens]
gb|AAC13776.1| Sm D2
sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
ref|NP_001029648.1| hypothetical protein LOC514932 [Bos taurus]
gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
Length = 118
Score = 169 bits (429), Expect = 6e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 169 bits (429), Expect = 6e-41
Identities = 80/90 (88%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|NP_649645.1| CG1249-PA [Drosophila melanogaster]
gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gb|AAF54135.1| CG1249-PA [Drosophila melanogaster]
sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 (snRNP core protein
D2) (Sm-D2)
Length = 119
Score = 169 bits (428), Expect = 8e-41
Identities = 80/90 (88%), Positives = 86/90 (95%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>gb|EAL28046.1| GA11659-PA [Drosophila pseudoobscura]
Length = 118
Score = 169 bits (428), Expect = 8e-41
Identities = 80/90 (88%), Positives = 86/90 (95%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 22 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 81
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 82 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 111
>gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Chlamys farreri]
Length = 119
Score = 168 bits (426), Expect = 1e-40
Identities = 80/90 (88%), Positives = 86/90 (95%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLL RV+AFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKG 84
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 168 bits (426), Expect = 1e-40
Identities = 79/90 (87%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLS+L SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>ref|XP_576676.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
D2 [Rattus norvegicus]
Length = 118
Score = 166 bits (419), Expect = 9e-40
Identities = 77/90 (85%), Positives = 87/90 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL S+KNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+E+WTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKDR+ISKMFLRG+SVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGNSVIVVLRNP 113
>ref|XP_638255.1| hypothetical protein DDB0218705 [Dictyostelium discoideum]
gb|EAL64772.1| hypothetical protein DDB0218705 [Dictyostelium discoideum]
Length = 112
Score = 161 bits (408), Expect = 2e-38
Identities = 78/93 (83%), Positives = 85/93 (91%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGK
Sbjct: 16 SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGK 75
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRNPK*SP 286
KKA P+NKDRFISKMFLRGDSVI+VL+NP +P
Sbjct: 76 KKAKPINKDRFISKMFLRGDSVILVLKNPLGAP 108
>ref|XP_619909.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
Length = 118
Score = 160 bits (405), Expect = 4e-38
Identities = 76/90 (84%), Positives = 84/90 (93%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTEVPK+ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>ref|XP_910243.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
Length = 118
Score = 160 bits (405), Expect = 4e-38
Identities = 76/90 (84%), Positives = 84/90 (93%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTEVPK+ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
Length = 125
Score = 160 bits (404), Expect = 5e-38
Identities = 73/98 (74%), Positives = 90/98 (91%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGP+SVL SV+NNTQVLINCRNN+KLL R++AFDRHCNMVLENVREMWTE+PKTGKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNRKP 274
KKKA V++D++ISKMFLRGDSVI+V++NPK + ++P
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVKNPKEAVRQQP 122
>emb|CAE75361.1| Hypothetical protein CBG23345 [Caenorhabditis briggsae]
Length = 118
Score = 160 bits (404), Expect = 5e-38
Identities = 77/90 (85%), Positives = 83/90 (92%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FS GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 24 FSVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>ref|NP_506004.1| Small Nuclear Ribonucleoprotein family member (snr-4)
[Caenorhabditis elegans]
emb|CAB01413.1| Hypothetical protein C52E4.3 [Caenorhabditis elegans]
sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 (snRNP core protein
D2) (Sm-D2)
Length = 118
Score = 159 bits (401), Expect = 1e-37
Identities = 76/90 (84%), Positives = 83/90 (92%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+ GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>ref|XP_484260.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
ref|XP_920955.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Mus
musculus]
Length = 118
Score = 158 bits (400), Expect = 1e-37
Identities = 75/90 (83%), Positives = 83/90 (92%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRN KKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KKK+ PVNK+ +ISKMFL GDS I+VLRNP
Sbjct: 84 KKKSKPVNKNCYISKMFLHGDSFIVVLRNP 113
>dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa (japonica
cultivar-group)]
Length = 431
Score = 146 bits (369), Expect = 6e-34
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 334
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL
Sbjct: 359 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 418
Query: 333 RGDSVIIVLRNPK 295
RGDSVIIVL+NPK
Sbjct: 419 RGDSVIIVLKNPK 431
>emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 145 bits (367), Expect = 1e-33
Identities = 68/77 (88%), Positives = 74/77 (96%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 387 KKKALPVNKDRFISKMF 337
KKK+ PVNKDR+ISKMF
Sbjct: 83 KKKSKPVNKDRYISKMF 99
>ref|XP_061427.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
Length = 117
Score = 143 bits (361), Expect = 5e-33
Identities = 70/90 (77%), Positives = 79/90 (87%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLENV+E WTEVPK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK+ PVNKD +IS+MFL GD VI+VLRNP
Sbjct: 84 -KKSKPVNKDCYISRMFLHGDLVIVVLRNP 112
>ref|XP_942442.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
Length = 117
Score = 140 bits (353), Expect = 4e-32
Identities = 69/90 (76%), Positives = 78/90 (86%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TG LSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLENV+E WTEVPK+GKG
Sbjct: 24 FNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK+ PVNKD +IS+MFL GD VI+VLRNP
Sbjct: 84 -KKSKPVNKDCYISRMFLHGDLVIVVLRNP 112
>ref|XP_539112.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Canis
familiaris]
Length = 117
Score = 140 bits (352), Expect = 5e-32
Identities = 69/88 (78%), Positives = 78/88 (88%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVL SVKNNTQVLINC N KKLLGRV+AF RHCNMVLENV+EMWT+VPK+ KG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCCN-KKLLGRVKAFKRHCNMVLENVKEMWTKVPKSSKG 82
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLR 304
KKK+ PVNKD +ISKMFL G S+I+VLR
Sbjct: 83 KKKSKPVNKDHYISKMFLCGHSIIVVLR 110
>gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
Length = 111
Score = 138 bits (348), Expect = 2e-31
Identities = 71/88 (80%), Positives = 78/88 (88%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRHCNMVLENV+EMWTE PK GKGK
Sbjct: 26 SQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK-GKGK 84
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRN 301
K PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 85 K---PVNKDRFISKMFLRGDSVILVLRN 109
>ref|XP_521555.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
D2; snRNP core protein D2; small nuclear
ribonucleoprotein D2 polypeptide (16.5kD) [Pan
troglodytes]
Length = 117
Score = 138 bits (348), Expect = 2e-31
Identities = 68/90 (75%), Positives = 78/90 (86%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+ GPLSVL SVKNNTQVLINCR+N KLLG V+AF RHCNMVLEN++EMWTEVPK+GKG
Sbjct: 24 FNMGPLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENMKEMWTEVPKSGKG 83
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK+ PVNKD +IS+MFL GD VI+VL NP
Sbjct: 84 -KKSKPVNKDCYISRMFLHGDLVIMVLWNP 112
>gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 138 bits (348), Expect = 2e-31
Identities = 71/88 (80%), Positives = 78/88 (88%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GPLSVL SV+N++QVLI+ RNNKKLL RV+AFDRHCNMVLENV+EMWTE PK GKGK
Sbjct: 80 SQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK-GKGK 138
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRN 301
K PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 139 K---PVNKDRFISKMFLRGDSVILVLRN 163
>ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
Length = 111
Score = 135 bits (341), Expect = 1e-30
Identities = 70/88 (79%), Positives = 77/88 (87%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GPLSVL SV+N+TQ+LI RNNKKLL RV+AFDRH NMVLENV+EMWTEVPK GKGK
Sbjct: 26 SQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKGK 84
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRN 301
K PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 85 K---PVNKDRFISKMFLRGDSVVLVLRN 109
>emb|CAB16363.1| SPAC2C4.03c [Schizosaccharomyces pombe]
ref|NP_594506.1| hypothetical protein SPAC2C4.03c [Schizosaccharomyces pombe 972h-]
sp|O14036|SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2 (snRNP core protein
D2) (Sm-D2)
Length = 115
Score = 132 bits (332), Expect = 1e-29
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FS GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G
Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG 84
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 85 -KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 130 bits (326), Expect = 6e-29
Identities = 62/88 (70%), Positives = 74/88 (84%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPLS+L +VK N Q+L+NCRNN+KLL R +AFDRH NMVLENV EMWTE+PK KG KK
Sbjct: 27 GPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLENVCEMWTEMPKKQKG-KK 85
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
PVNK+RFI K+FLRGDSVI+V++NPK
Sbjct: 86 TKPVNKERFIHKLFLRGDSVILVIKNPK 113
>ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
gb|EAA76548.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 129 bits (325), Expect = 7e-29
Identities = 63/87 (72%), Positives = 74/87 (85%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FS GPLS+L +V+++ QVLI+ RNN+KLL RV+AFDRHCNMVLENV+EMWTE P+ G
Sbjct: 68 FSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-G 126
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVL 307
KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 127 GKKGRPVNKDRFISKMFLRGDSVILVL 153
>ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
Length = 122
Score = 127 bits (319), Expect = 4e-28
Identities = 62/86 (72%), Positives = 73/86 (84%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
+ GPLS+L + + +TQVLI+CRNN+KLL RV+AFDRHCNMVLENV+EMWTE PK GKG+
Sbjct: 39 TAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGR 98
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVL 307
VNKDRFISKMFLRGDSVI+VL
Sbjct: 99 ----GVNKDRFISKMFLRGDSVILVL 120
>dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae]
Length = 115
Score = 124 bits (311), Expect = 3e-27
Identities = 61/86 (70%), Positives = 72/86 (83%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
+ GPLS+L + + +TQVLI CR+N++LL RV+AFDRHCNMVLENV+EMWTE PK GKGK
Sbjct: 32 TAGPLSLLQTATRTHTQVLIACRSNRRLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGK 91
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVL 307
VNKDRFISKMFLRGDSVI+VL
Sbjct: 92 ----GVNKDRFISKMFLRGDSVILVL 113
>ref|XP_742706.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi]
emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi]
Length = 101
Score = 124 bits (310), Expect = 4e-27
Identities = 60/88 (68%), Positives = 72/88 (81%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W EV K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVVKDKKKKKK 76
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
Length = 106
Score = 123 bits (309), Expect = 5e-27
Identities = 57/89 (64%), Positives = 75/89 (84%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GPLS+L VK NTQ+L+NCRNN+K+LGRV+AFDRHCN++L + RE+WTE K+GK K
Sbjct: 18 SEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGK-K 76
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRNP 298
A +NKDRFISK+F+RGDSVI++L++P
Sbjct: 77 GSAKYINKDRFISKLFVRGDSVILILKSP 105
>ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 123 bits (309), Expect = 5e-27
Identities = 60/88 (68%), Positives = 72/88 (81%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W EV K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVIKDKKKKKK 76
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ref|NP_473101.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 123 bits (308), Expect = 7e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPL +L VK+N QVLINCRNN+K+LGRV+AFDRHCN++L VRE+W EV K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>ref|XP_505089.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG77896.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 115
Score = 123 bits (308), Expect = 7e-27
Identities = 62/87 (71%), Positives = 72/87 (82%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FS GPLS+L +V+N+TQVLI+CRNNKKLL RV+AFDRH NMVLENV+EMWTE KT G
Sbjct: 28 FSHGPLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKTKTASG 87
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVL 307
K V KDRFISKMFLRGD+VI+V+
Sbjct: 88 -KPGKTVTKDRFISKMFLRGDTVILVV 113
>ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii str.
17XNL]
gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 123 bits (308), Expect = 7e-27
Identities = 59/88 (67%), Positives = 72/88 (81%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPL +L VK+N QVLINCRNN+KLLGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEIIKDKKKKKK 76
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
+NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 ---INKDRYISILFLRGDSVILILRNPK 101
>gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 122 bits (306), Expect = 1e-26
Identities = 60/91 (65%), Positives = 74/91 (81%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FS GP S+L +VK NTQVLI RNN+K+L +VRAFDRH NMVLENV EMWTEVP+ G
Sbjct: 13 FSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVPRGSHG 72
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KK+ P+ K+R+I+K+FLRGDSVI VL+NP+
Sbjct: 73 -KKSKPMKKERYITKLFLRGDSVIFVLKNPQ 102
>ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 120 bits (302), Expect = 3e-26
Identities = 60/88 (68%), Positives = 71/88 (80%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPLS+L V+ N QVLINCRNN+K+L RV+AFDRHCNM+L NVREMWT V G GKKK
Sbjct: 22 GPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTNVREMWT-VRGKGTGKKK 80
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KDRF+S++FLRGDSVI+VL+NPK
Sbjct: 81 L--ETKDRFLSRLFLRGDSVIVVLKNPK 106
>emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
Length = 106
Score = 118 bits (296), Expect = 2e-25
Identities = 59/88 (67%), Positives = 71/88 (80%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPLS+L V+ N QVLINCRNN+K+L RV+AFDRHCNM+L +VREMWT V G GKKK
Sbjct: 22 GPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMILTDVREMWT-VRGKGTGKKK 80
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
KDRFI+++FLRGDSVI+VL+NPK
Sbjct: 81 L--ETKDRFITRLFLRGDSVIVVLKNPK 106
>emb|CAG88765.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_460458.1| hypothetical protein DEHA0F02420g [Debaryomyces hansenii CBS767]
Length = 115
Score = 114 bits (284), Expect = 4e-24
Identities = 52/88 (59%), Positives = 71/88 (80%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+ GP+S+L +V N + V+I+CRNN KL+ +V+AFDRHCN++LENV+E+WTE K KG
Sbjct: 25 FTHGPMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKELWTESVKNNKG 84
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLR 304
KK +K+RF+SKMFLRGDSV+IVL+
Sbjct: 85 -KKIKSTSKERFVSKMFLRGDSVVIVLK 111
>emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
ref|XP_961124.1| hypothetical protein [Neurospora crassa N150]
ref|XP_323079.1| hypothetical protein [Neurospora crassa]
gb|EAA31888.1| hypothetical protein [Neurospora crassa]
Length = 126
Score = 107 bits (268), Expect = 3e-22
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FS GPLS+L +V++++QVLI+ RN +K+L RV+AFDRH NMVLENV+EMWTE P+ G
Sbjct: 32 FSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG 91
Query: 387 KKKALPVNKDRFISKMFL 334
KK PVNKDRFISKMF+
Sbjct: 92 -KKGKPVNKDRFISKMFV 108
>ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
ref|XP_649862.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gb|EAL44476.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 101
Score = 105 bits (263), Expect = 1e-21
Identities = 52/87 (59%), Positives = 67/87 (77%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GP +L +V+ + QVLINCRNNKKL+ RV+AFDRH NMVLEN++E+WTE+ + GK K
Sbjct: 11 GPFQLLTEAVEKHGQVLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEMKRDSDGKLK 70
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNP 298
A R ISKMFLRGDSVI++++NP
Sbjct: 71 AKLC--QRSISKMFLRGDSVIVIVKNP 95
>ref|NP_013377.1| Core Sm protein Sm D2; part of heteroheptameric complex (with
Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is
part of the spliceosomal U1, U2, U4, and U5 snRNPs;
homolog of human Sm D2; Smd2p [Saccharomyces cerevisiae]
sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
Length = 110
Score = 102 bits (255), Expect = 9e-21
Identities = 49/90 (54%), Positives = 67/90 (74%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------- 78
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK +N++RFISK+FLRGDSVI+VL+ P
Sbjct: 79 KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>ref|NP_914299.1| P0458E05.28 [Oryza sativa (japonica cultivar-group)]
Length = 50
Score = 102 bits (253), Expect = 2e-20
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = -1
Query: 444 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 295
MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK
Sbjct: 1 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK 50
>gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 101 bits (252), Expect = 2e-20
Identities = 49/75 (65%), Positives = 61/75 (81%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GPLS+L +V++++QVLI+ R+N+KLL RV+AFDRHCNM+LENV+EMWTE P
Sbjct: 31 SNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNG 88
Query: 384 KKALPVNKDRFISKM 340
KK PVNKDRFISKM
Sbjct: 89 KKGRPVNKDRFISKM 103
>emb|CAG59111.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_446187.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 100 bits (249), Expect = 5e-20
Identities = 47/90 (52%), Positives = 66/90 (73%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F GP+S++ ++ V+I+ RNN KL+ RV+AFDRHCN+VLENV+E+WTE
Sbjct: 26 FKHGPMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWTE------- 78
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK +N++RFISK+FLRGDSVI++L+ P
Sbjct: 79 KKNKQTINRERFISKLFLRGDSVIVILKAP 108
>gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
ref|NP_986943.1| AGR277Wp [Eremothecium gossypii]
Length = 108
Score = 99.8 bits (247), Expect = 8e-20
Identities = 49/90 (54%), Positives = 69/90 (76%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F GP+S++ ++ T V+I+ RNN K++ RV++FDRHCNMVLENV+E+W+E +G
Sbjct: 25 FKHGPMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSE----REG 80
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 298
KK + NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 81 KKIS---NKERFISKLFLRGDSVIVVLKAP 107
>ref|XP_453476.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00572.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 110
Score = 96.7 bits (239), Expect = 7e-19
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GP+S++ S+ T V+I+ RNN KL+ RV++FD+HCNMVLENV+E+WTE GKK
Sbjct: 32 GPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWTE---NVNGKK- 87
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLR 304
VN++RF++K+FLRGDSVIIV++
Sbjct: 88 ---VNRERFVAKLFLRGDSVIIVVK 109
>ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 76.6 bits (187), Expect = 7e-13
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N Q L+ ++ L RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISK
Sbjct: 5 NIQTLLQKPRSECTLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISK 60
Query: 342 MFL 334
M+L
Sbjct: 61 MYL 63
>gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 75.1 bits (183), Expect = 2e-12
Identities = 34/83 (40%), Positives = 55/83 (66%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GP +L K N++++I+ +N K G +R FD+HCN++LE+V E+W E + KK
Sbjct: 16 GPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
Query: 378 ALPVNKDRFISKMFLRGDSVIIV 310
+ V K++FI K+F RGD+VI++
Sbjct: 76 KV-VIKEKFIPKLFFRGDAVILI 97
>ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 69.7 bits (169), Expect = 9e-11
Identities = 38/97 (39%), Positives = 61/97 (62%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GPLS++ ++ VL++ R+N+K+LGRV A+DRH N+++E+ +E+ T K KG+KK
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGK-NKGRKK 78
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNRKPGL 268
R + K+F+RGD+VI+V + K GL
Sbjct: 79 RQGCEFSRKLGKVFIRGDTVILVAGEIEVDQVEKDGL 115
>gb|AAK68737.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 135
Score = 68.6 bits (166), Expect = 2e-10
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVR L+ + K K
Sbjct: 19 FNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRLLTGTATWFLKMSEKCGLRFRKPEKE 78
Query: 387 KKK 379
++K
Sbjct: 79 RRK 81
Score = 42.0 bits (97), Expect = 0.020
Identities = 26/67 (38%), Positives = 30/67 (44%)
Frame = -2
Query: 488 RSCLAGFVLLIATVTWCSRTCGRCGQRSPXXXXXXXXXXXXXRIDSSARCSSGATRSSSC 309
R L LL T TW + +CG R IDSSARCS T+S S
Sbjct: 45 RKLLGRVRLLTGTATWFLKMSEKCGLRFRKPEKERRKLFLLTEIDSSARCSCVETQSLSS 104
Query: 308 *GTPSDR 288
GTPS+R
Sbjct: 105 SGTPSER 111
>ref|XP_945567.1| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
ref|XP_372472.2| PREDICTED: similar to small nuclear ribonucleoprotein D2 [Homo
sapiens]
Length = 95
Score = 67.0 bits (162), Expect = 6e-10
Identities = 31/59 (52%), Positives = 42/59 (71%)
Frame = -1
Query: 444 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNRKPGL 268
++L ++EMWTEVPK+G GKKK+ P+ KD +ISK FLR D I+VLRN + + P L
Sbjct: 13 LLLRYLKEMWTEVPKSGNGKKKSTPIKKDHYISKTFLREDRDIVVLRNSLIASKKGPPL 71
>ref|XP_548710.2| PREDICTED: similar to serine/threonine kinase 32C [Canis
familiaris]
Length = 556
Score = 64.3 bits (155), Expect = 4e-09
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = -1
Query: 561 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 382
T +SVL SV+NN+ VL++ +KK GRV A DR C +VL + +E WTEVP+ KG++
Sbjct: 60 TRVVSVLTQSVENNSLVLVHGPRSKKPPGRVEASDRRCYVVLGDAKETWTEVPEGSKGRR 119
Query: 381 KALPVNK 361
K PV +
Sbjct: 120 KTEPVTR 126
>emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major]
Length = 103
Score = 63.2 bits (152), Expect = 8e-09
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GP S+L ++K +V I CRN+K LL V AFD+H N+VL+ V+E+ TE G ++
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ 81
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNP 298
K R I +FLRG+SVI +++ P
Sbjct: 82 -----KQRTIENLFLRGESVIFIVKLP 103
>emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
ref|NP_113527.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 62.8 bits (151), Expect = 1e-08
Identities = 29/83 (34%), Positives = 54/83 (65%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
P + V+N+ V+I RNNK+++G++ +D+H N++LENV E+ G+ +
Sbjct: 3 PFDYISGCVRNDKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSEL 58
Query: 375 LPVNKDRFISKMFLRGDSVIIVL 307
+ + K +FI K+FLRGD+++++L
Sbjct: 59 IKI-KSKFIPKVFLRGDNIVLIL 80
>gb|AAH14600.1| Unknown (protein for MGC:26736) [Homo sapiens]
Length = 55
Score = 61.2 bits (147), Expect = 3e-08
Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 3/46 (6%)
Frame = -1
Query: 444 MVLENVREMWTEVPKTG---KGKKKALPVNKDRFISKMFLRGDSVI 316
MVLENV+EM TEVPK G KGKKK+ P NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 60.1 bits (144), Expect = 7e-08
Identities = 37/89 (41%), Positives = 51/89 (57%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GP SVL +++N T+V I R NK L+ V AFD+H N+VL +V E+ V K
Sbjct: 30 SEGPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVEL-AMVNKQ---- 84
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRNP 298
K+R I MFLRG SV+ +++ P
Sbjct: 85 ------QKERSIRNMFLRGGSVVFIVKLP 107
>ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 60.1 bits (144), Expect = 7e-08
Identities = 37/89 (41%), Positives = 51/89 (57%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S GP SVL +++N T+V I R NK L+ V AFD+H N+VL +V E+ V K
Sbjct: 30 SEGPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVEL-AMVNKE---- 84
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRNP 298
K+R I MFLRG SV+ +++ P
Sbjct: 85 ------QKERSIRNMFLRGGSVVFIVKLP 107
>emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
ref|XP_952604.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria annulata strain
Ankara]
Length = 94
Score = 58.2 bits (139), Expect = 3e-07
Identities = 29/82 (35%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +++ + + + C+N ++L+GR+ AFD HCNMVL +V E T V K +
Sbjct: 10 PLDMIRLNL--DEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNET 67
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
V K R +F+RGDS++++
Sbjct: 68 TKVTK-RDNGTIFVRGDSLVLL 88
>gb|AAG00462.1| Sm-D2 [Trypanosoma brucei]
Length = 111
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T V
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei TREU927]
Length = 111
Score = 58.2 bits (139), Expect = 3e-07
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
GP +L +VKN T+V I R NK L+ V AFD+H N+VL + E+ T V
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL-TMVNNE------ 84
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
K+R I MFLRG SV+ ++R P+
Sbjct: 85 ----QKERSIRNMFLRGASVVFIVRLPQ 108
>ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum]
Length = 95
Score = 55.5 bits (132), Expect = 2e-06
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK---TGKGK 385
PL ++ +S+ + QV + CR N++L G + A+D H NMVL NV E + E T +
Sbjct: 7 PLDLIRLSL--DEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSE 64
Query: 384 KKALPVNKDRFISKMFLRGDSVIIV 310
KK K R I +FLRGD +I+V
Sbjct: 65 KKL----KKRRIEMLFLRGDLIILV 85
>ref|NP_502579.1| LSM Sm-like protein family member (lsm-3) [Caenorhabditis elegans]
emb|CAB60606.2| Hypothetical protein Y62E10A.12 [Caenorhabditis elegans]
Length = 102
Score = 53.9 bits (128), Expect = 5e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ R + +F+RGDSVI+V
Sbjct: 74 IYKQTKRVVPMLFVRGDSVILV 95
>emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabditis briggsae]
Length = 102
Score = 53.9 bits (128), Expect = 5e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL +L +S+ + +V + RN+++L GR+RAFD+H NMVL V E T + + +
Sbjct: 17 PLDLLRLSL--DEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEE 73
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ R + +F+RGDSVI+V
Sbjct: 74 IYRQSKRVVPMLFVRGDSVILV 95
>ref|XP_500743.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG82989.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 94
Score = 53.5 bits (127), Expect = 7e-06
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV----PKTGKG 388
PL ++ +S+ N V + R ++L G + A+D HC+MVL NV E E PK
Sbjct: 12 PLDLIGLSLNEN--VFVKLRGGRELYGLLHAYDIHCSMVLGNVEETVFEYVEGSPKLEAR 69
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SP 286
KKK+ +F+RGDSVI+V NP P
Sbjct: 70 KKKS---------EMLFVRGDSVILVTSNPPKRP 94
>ref|XP_223423.3| PREDICTED: Kruppel-like factor 3 [Rattus norvegicus]
Length = 709
Score = 53.5 bits (127), Expect = 7e-06
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = -1
Query: 444 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 331
MVLEN++EMWTEVPK+ GKKK+ PVNK + KMFLR
Sbjct: 1 MVLENMKEMWTEVPKSSMGKKKSKPVNK---MPKMFLR 35
>ref|XP_657435.1| U6 snRNA-associated Sm-like protein [Entamoeba histolytica
HM-1:IMSS]
gb|EAL52049.1| U6 snRNA-associated Sm-like protein, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 78
Score = 52.0 bits (123), Expect = 2e-05
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
P+ ++ +S+ +N V I R +KL G++RAFD+H N++L NV EM+ E K +
Sbjct: 9 PIDLIKLSLDDN--VFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE-------KTRT 59
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
PV +++RGD VI++
Sbjct: 60 FPV--------LYIRGDLVILI 73
>ref|XP_896849.1| PREDICTED: similar to CG1249-PA [Mus musculus]
ref|XP_911911.1| PREDICTED: similar to CG1249-PA [Mus musculus]
Length = 103
Score = 51.6 bits (122), Expect = 2e-05
Identities = 33/74 (44%), Positives = 39/74 (52%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PLS+ +I+C N KL G+V+ F HCNMVLENV EM T T +
Sbjct: 15 PLSLGSCRHSRTLVFIISC--NSKLPGQVKDFSHHCNMVLENVTEMLTPRATTARSH--- 69
Query: 375 LPVNKDRFISKMFL 334
P NKD ISKM L
Sbjct: 70 -PSNKDHCISKMAL 82
>gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura]
Length = 194
Score = 50.8 bits (120), Expect = 4e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T V + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD VI+V
Sbjct: 76 YKTTK-RTIPMLFVRGDGVILV 96
>ref|NP_704356.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
emb|CAD51175.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
Length = 74
Score = 50.1 bits (118), Expect = 7e-05
Identities = 22/69 (31%), Positives = 43/69 (62%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 337
++ + C+ +++L+G++ A+D H NM+L NVRE + + K + +R + +F
Sbjct: 4 EIFLKCKGDRELIGKLDAYDNHLNMILSNVRETY---KYSVKENDEETVKKMERNLDMVF 60
Query: 336 LRGDSVIIV 310
+RGDS+I+V
Sbjct: 61 VRGDSIILV 69
>ref|NP_732931.1| CG31184-PA [Drosophila melanogaster]
gb|AAN13967.1| CG31184-PA [Drosophila melanogaster]
Length = 103
Score = 50.1 bits (118), Expect = 7e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T V + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 50.1 bits (118), Expect = 7e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + +V + RN ++L GR+ AFD+H NMVL + E T V + ++
Sbjct: 18 PLDLIRLSL--DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 75
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD VI+V
Sbjct: 76 YKTAK-RTIPMLFVRGDGVILV 96
>ref|XP_786272.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Strongylocentrotus purpuratus]
Length = 105
Score = 50.1 bits (118), Expect = 7e-05
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T V + ++
Sbjct: 18 PLDLIRLSL--DERIYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEETYEEI 75
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD VI+V
Sbjct: 76 YKSTK-RSIQMLFVRGDGVILV 96
>ref|NP_173542.1| unknown protein [Arabidopsis thaliana]
gb|AAG50100.1| unknown protein [Arabidopsis thaliana]
gb|AAF81363.1| Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene. [Arabidopsis thaliana]
Length = 97
Score = 49.7 bits (117), Expect = 9e-05
Identities = 25/82 (30%), Positives = 52/82 (63%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S++ ++ + R++++L G++ AFD+H NM+L +V E+ T + + ++
Sbjct: 12 PLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEI 69
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ K R + +F+RGD VI+V
Sbjct: 70 VRTTK-RTVPFLFVRGDGVILV 90
>gb|EAS07202.1| Sm protein [Tetrahymena thermophila SB210]
Length = 90
Score = 49.7 bits (117), Expect = 9e-05
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ S+ N + I CR++++L G++ AFD H NM+LE+V E + + K+ A
Sbjct: 7 PLDLIKHSL--NQIIQIKCRHSRELKGKLLAFDTHLNMLLEDVEESFVQENKS----INA 60
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ R I +++RGD++I V
Sbjct: 61 AAQKQTRCIPMLYMRGDTIITV 82
>emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 49.3 bits (116), Expect = 1e-04
Identities = 27/82 (32%), Positives = 51/82 (62%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T V + + +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEE 73
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
L + R I +F+RGD V++V
Sbjct: 74 LYKSTKRNIPMLFVRGDGVVLV 95
>ref|NP_177812.1| unknown protein [Arabidopsis thaliana]
gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gb|AAG51149.1| Sm-like protein [Arabidopsis thaliana]
Length = 98
Score = 48.9 bits (115), Expect = 2e-04
Identities = 27/82 (32%), Positives = 51/82 (62%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + R++++L G++ AFD+H NM+L +V E T V + ++
Sbjct: 12 PLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEI 69
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ K R I +F+RGD VI+V
Sbjct: 70 VRTTK-RTIEFLFVRGDGVILV 90
>ref|NP_055278.1| Lsm3 protein [Homo sapiens]
ref|NP_080585.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
gb|AAH07055.1| Lsm3 protein [Homo sapiens]
ref|XP_858392.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
isoform 2 [Canis familiaris]
ref|XP_849275.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
isoform 1 [Canis familiaris]
gb|AAI08143.1| Unknown (protein for MGC:133527) [Bos taurus]
gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
dbj|BAB22585.1| unnamed protein product [Mus musculus]
emb|CAG33466.1| LSM3 [Homo sapiens]
dbj|BAB25303.1| unnamed protein product [Mus musculus]
gb|AAG14954.1| MDS017 [Homo sapiens]
ref|XP_216220.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Rattus norvegicus]
gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gb|AAD56227.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3
sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3
ref|NP_001032564.1| hypothetical protein LOC614759 [Bos taurus]
Length = 102
Score = 48.5 bits (114), Expect = 2e-04
Identities = 26/82 (31%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyostelium discoideum]
gb|EAL69055.1| hypothetical protein DDB0217913 [Dictyostelium discoideum]
Length = 101
Score = 48.5 bits (114), Expect = 2e-04
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E V K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69
Query: 375 LP---VNKDRFISKMFLRGDSVIIV 310
+ +N R I +F+RGD VI++
Sbjct: 70 IRFFLINIKRNIKMLFVRGDGVILI 94
>ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Gallus gallus]
Length = 102
Score = 48.5 bits (114), Expect = 2e-04
Identities = 26/82 (31%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear cress). Sm-like protein
[Dictyostelium discoideum]
Length = 98
Score = 48.1 bits (113), Expect = 3e-04
Identities = 25/82 (30%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + R +++L G++ A+D+H NM+L +V E V K + ++
Sbjct: 12 PLDLIRLSL--DERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEI 69
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ N R I +F+RGD VI++
Sbjct: 70 IR-NIKRNIKMLFVRGDGVILI 90
>dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa (japonica
cultivar-group)]
Length = 104
Score = 48.1 bits (113), Expect = 3e-04
Identities = 26/82 (31%), Positives = 52/82 (63%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V + ++
Sbjct: 19 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ K R I +F+RGD VI+V
Sbjct: 77 VRTTK-RTIPFLFVRGDGVILV 97
>emb|CAB42366.2| SPBC9B6.05c [Schizosaccharomyces pombe]
ref|NP_595747.1| hypothetical protein SPBC9B6.05c [Schizosaccharomyces pombe 972h-]
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
Length = 93
Score = 47.8 bits (112), Expect = 4e-04
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
L + + +F+RGDSVI++
Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>gb|EAA00883.2| ENSANGP00000011793 [Anopheles gambiae str. PEST]
ref|XP_321595.2| ENSANGP00000011793 [Anopheles gambiae str. PEST]
Length = 92
Score = 47.4 bits (111), Expect = 5e-04
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + R ++L GR+ AFD+H NMVL + E T V + ++
Sbjct: 7 PLDLIRLSL--DEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEV 64
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD VI+V
Sbjct: 65 YKTTK-RTIPMLFVRGDGVILV 85
>ref|XP_851528.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 102
Score = 47.4 bits (111), Expect = 5e-04
Identities = 26/82 (31%), Positives = 49/82 (59%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSP--DERIYVKMRNDRELQGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K R I +F+RGD V++V
Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>ref|XP_636207.1| hypothetical protein DDB0188426 [Dictyostelium discoideum]
gb|EAL62706.1| hypothetical protein DDB0188426 [Dictyostelium discoideum]
Length = 257
Score = 47.4 bits (111), Expect = 5e-04
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVR----AFDRHCNMVLENVRE---MWTE 409
F+ GPLS+L ++++ +++ + R + G R AFD+H N++L +V E +
Sbjct: 162 FTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKS 221
Query: 408 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 307
+P T + P K R+ ++F++GD+V+ V+
Sbjct: 222 LPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>ref|XP_534071.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 102
Score = 47.0 bits (110), Expect = 6e-04
Identities = 25/82 (30%), Positives = 49/82 (59%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEEAYEEI 74
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
K I +F+RGD V++V
Sbjct: 75 YKSTKWN-IPMLFVRGDGVVLV 95
>ref|XP_764675.1| hypothetical protein TP02_0106 [Theileria parva strain Muguga]
gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 47.0 bits (110), Expect = 6e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK 379
PL ++ +++ + + + C+N ++L+GR++AFD HCNMVL V E T V K +
Sbjct: 10 PLDMIRLNL--DEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNNSKNE 66
>ref|XP_849902.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Canis familiaris]
Length = 102
Score = 45.4 bits (106), Expect = 0.002
Identities = 24/82 (29%), Positives = 50/82 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + + +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI-EIDEETYEE 73
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ + R I +F+ GD V++V
Sbjct: 74 INKSTKRNIPMLFVWGDGVVLV 95
>emb|CAG87742.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_459516.1| hypothetical protein DEHA0E05236g [Debaryomyces hansenii CBS767]
Length = 88
Score = 44.7 bits (104), Expect = 0.003
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 334
VL+ R +++ G+++ +D HCNM+L + E +VP+ + PV K+ +F+
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQE------PVTKN--TDMVFV 76
Query: 333 RGDSVIIV 310
RGDSVI++
Sbjct: 77 RGDSVILI 84
>ref|XP_731034.1| ribonucleoprotein [Plasmodium yoelii yoelii str. 17XNL]
gb|EAA22599.1| Putative Ribonucleoprotein [Plasmodium yoelii yoelii]
Length = 104
Score = 43.9 bits (102), Expect = 0.005
Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGR---------VRAFDRHCNMVLENVREMW 415
F GPL + ++++ ++ + C+ +++L G + A+D H NM+L N +E +
Sbjct: 10 FYKGPLDYIRLNMEE--EIFLKCKGDRELTGTLDVRKWIYIIIAYDNHLNMILSNAKEKY 67
Query: 414 TEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 310
+V T + ++ + +R + +F+RGDS+I+V
Sbjct: 68 KQV--TIENNEECVK-QIERNLDMVFVRGDSIILV 99
>ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 43.1 bits (100), Expect = 0.009
Identities = 26/84 (30%), Positives = 46/84 (54%)
Frame = -1
Query: 561 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 382
T P ++ +S+ +V + R +++L G + A+D H N++L +V E V +
Sbjct: 24 TEPFDLIRLSISE--RVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGS 81
Query: 381 KALPVNKDRFISKMFLRGDSVIIV 310
+ + V K R +F+RGDSVI+V
Sbjct: 82 ETVRVVK-RQSEMLFVRGDSVILV 104
>emb|CAG89843.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_461428.1| hypothetical protein DEHA0F26554g [Debaryomyces hansenii CBS767]
Length = 93
Score = 42.7 bits (99), Expect = 0.012
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ S+ + QVL+ N+K+ G + FD + NMVLENV E E P
Sbjct: 23 PLEIIDKSIGHKIQVLMT--NDKEFKGTLIGFDDYVNMVLENVEEFDNEGP--------- 71
Query: 375 LPVNKDRFISKMFLRGDSVIIVL 307
K + I KM L G V +++
Sbjct: 72 ----KGKVIKKMLLNGSQVAMLI 90
>gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
ref|NP_342263.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 42.4 bits (98), Expect = 0.015
Identities = 22/71 (30%), Positives = 41/71 (57%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK +
Sbjct: 17 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 62
Query: 342 MFLRGDSVIIV 310
+ +RGD+VI++
Sbjct: 63 IVIRGDNVILI 73
>ref|XP_766985.1| hypothetical protein GLP_122_3813_3433 [Giardia lamblia ATCC 50803]
gb|EAA36838.1| GLP_122_3813_3433 [Giardia lamblia ATCC 50803]
Length = 126
Score = 42.4 bits (98), Expect = 0.015
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = -1
Query: 561 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 382
+ PL +L S+++ VL+ +NN + G + +FD H N++L N E TG
Sbjct: 51 SNPLYLLKTSLEDRVSVLL--QNNSSITGLLASFDEHMNLILINAEE-------TGH--- 98
Query: 381 KALPVNKDRFISKMFLRGDSVIIVLR 304
+ +RF + +RGDS+I V R
Sbjct: 99 -----SLNRFFPLLVIRGDSIIFVTR 119
>ref|XP_942368.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Homo sapiens]
Length = 101
Score = 42.4 bits (98), Expect = 0.015
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 337
++ + RN+++L GR+ +D+H NM+L +V E T + + ++ K I F
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQN-IPVFF 85
Query: 336 LRGDSVIIV 310
LRGD + +V
Sbjct: 86 LRGDGIFLV 94
>ref|XP_934007.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Homo sapiens]
Length = 101
Score = 42.4 bits (98), Expect = 0.015
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 337
++ + RN+++L GR+ +D+H NM+L +V E T + + ++ K I F
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQN-IPVFF 85
Query: 336 LRGDSVIIV 310
LRGD + +V
Sbjct: 86 LRGDGIFLV 94
>pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 42.4 bits (98), Expect = 0.015
Identities = 22/71 (30%), Positives = 41/71 (57%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N VL+ + NK++ G +R++D+H N+VL + E+ ++ G GKK +
Sbjct: 19 NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGT 64
Query: 342 MFLRGDSVIIV 310
+ +RGD+VI++
Sbjct: 65 IVIRGDNVILI 75
>ref|XP_451766.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH02159.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 83
Score = 42.0 bits (97), Expect = 0.020
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S PL +L +++ + +V + R+ ++L+G ++AFD HCN+VL + +E E+ +G
Sbjct: 2 SDTPLDLLKLNL--DERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGD 56
Query: 384 KKALPVNKDRFISKMFLRGDSVIIV 310
K +RF +F+RG V +V
Sbjct: 57 LK----TTERFSEMIFVRGGLVALV 77
>gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
ref|NP_984984.1| AER125Cp [Eremothecium gossypii]
Length = 83
Score = 41.6 bits (96), Expect = 0.026
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
S PL +L +++ + +V + R +KL G ++AFD HCN+VL + E + + G+
Sbjct: 2 SDTPLDLLRLNL--DERVYVKLRGARKLSGTLQAFDSHCNIVLSDAEE---TIYQLIDGE 56
Query: 384 KKALPVNKDRFISKMFLRGDSVIIV 310
K ++ + +F+RGDSV +V
Sbjct: 57 LK----SETKSSEMVFVRGDSVTLV 77
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2)
(Sm-D2)
Length = 50
Score = 41.2 bits (95), Expect = 0.034
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNK 487
F+TGPLSV S K TQVLINCRN K
Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 40.4 bits (93), Expect = 0.057
Identities = 21/69 (30%), Positives = 40/69 (57%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KK + + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERRTLGL 72
Query: 342 MFLRGDSVI 316
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>ref|XP_770710.1| hypothetical protein GLP_680_47464_47838 [Giardia lamblia ATCC
50803]
gb|EAA40538.1| GLP_680_47464_47838 [Giardia lamblia ATCC 50803]
Length = 124
Score = 40.4 bits (93), Expect = 0.057
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 334
VL+ R+ + + G ++A+DRH N+V E W E + ++R L
Sbjct: 64 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 112
Query: 333 RGDSVIIVLRN 301
RGD+VI+V+ N
Sbjct: 113 RGDNVIMVVSN 123
>dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 39.3 bits (90), Expect = 0.13
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KK + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 72
Query: 342 MFLRGDSVI 316
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>ref|NP_001032011.1| unknown protein [Arabidopsis thaliana]
ref|NP_199263.1| unknown protein [Arabidopsis thaliana]
dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
Length = 254
Score = 39.3 bits (90), Expect = 0.13
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ + ++ ++L+G+ AFDRH N+VL + E + ++P KK + R +
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 72
Query: 342 MFLRGDSVI 316
+ LRG+ VI
Sbjct: 73 VLLRGEEVI 81
>gb|AAW41290.1| Sm-like protein, putative [Cryptococcus neoformans var. neoformans
JEC21]
ref|XP_567109.1| Sm-like protein [Cryptococcus neoformans var. neoformans JEC21]
gb|EAL22973.1| hypothetical protein CNBA7410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 95
Score = 38.9 bits (89), Expect = 0.17
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +++ +VLI R ++ + G + A+D H N+V+ E V T +G +
Sbjct: 12 PLDLVKLAL--GERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEG--QP 67
Query: 375 LPVNKDRFISKM-FLRGDSVIIV 310
LP +R ++M F+RGD VI++
Sbjct: 68 LPPRIERRTAEMLFVRGDGVILL 90
>ref|NP_013543.1| Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p
and either Lsm1p or 8p): cytoplasmic Lsm1p complex
involved in mRNA decay; nuclear Lsm8p complex part of U6
snRNP and possibly involved in processing tRNA, snoRNA,
and rRNA; Lsm3p [Saccharomyces cerevisiae]
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)
Length = 89
Score = 38.9 bits (89), Expect = 0.17
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL +L +++ + +V I R + L+G ++AFD HCN+VL + E ++ +
Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSE--- 58
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+R +F+RGD+V ++
Sbjct: 59 ----SERRCEMVFIRGDTVTLI 76
>pir||T40786 probable SNRNP SM-like protein - fission yeast
(Schizosaccharomyces pombe)
Length = 83
Score = 38.9 bits (89), Expect = 0.17
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL ++ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA
Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
Query: 375 LPVNKDRFISKMFLRG 328
L + + +F+RG
Sbjct: 68 LKTIRKHY-EMLFVRG 82
>ref|NP_849414.1| SMB [Arabidopsis thaliana]
ref|NP_193777.1| SMB [Arabidopsis thaliana]
ref|NP_001031682.1| SMB [Arabidopsis thaliana]
emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
Length = 257
Score = 38.9 bits (89), Expect = 0.17
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ + ++ ++L+G+ AFDRH N+VL + E P KGKK R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKINEEREDRRTLGL 71
Query: 342 MFLRGDSVI 316
+ LRG+ VI
Sbjct: 72 VLLRGEEVI 80
>ref|XP_577512.1| PREDICTED: similar to LSM3 homolog, U6 small nuclear RNA associated
[Rattus norvegicus]
Length = 134
Score = 38.1 bits (87), Expect = 0.28
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = -1
Query: 540 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE--MWTEV-PKTGKGKKKALP 370
++++ Q+ + RN+++L GR+ +D+H NM+L + E M E+ +T + K+
Sbjct: 20 LLTINLEEQICMKTRNDRELSGRLHVYDQHLNMILGDAEETVMMIEIDEETYEEIDKSTK 79
Query: 369 VNKDRFISKMFLRGDSVI 316
N I +F++GD V+
Sbjct: 80 XN----IPMLFIQGDDVL 93
>ref|XP_523516.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Pan troglodytes]
Length = 135
Score = 38.1 bits (87), Expect = 0.28
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 337
++ + RN+++L GR+ +D+H NM+L +V E T + + ++ K I
Sbjct: 27 RIYVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETYEETYESTKQN-IPVPL 85
Query: 336 LRGDSVIIV 310
+RGD + +V
Sbjct: 86 VRGDGIFLV 94
>ref|NP_915643.1| P0505D12.24 [Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 37.7 bits (86), Expect = 0.37
Identities = 16/50 (32%), Positives = 35/50 (70%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
PL ++ +S+ + ++ + R++++L G++ A+D+H NM+L +V E+ T V
Sbjct: 19 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 66
>ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 37.4 bits (85), Expect = 0.49
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ + ++++ ++G + AFDRH N+VL + +E + KK P R +
Sbjct: 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEY-------RRVKKGEEPKELKRSLGL 58
Query: 342 MFLRGDSVI-IVLRNPK*SPNRKP 274
+ LRG++++ V P + + KP
Sbjct: 59 IMLRGENIVTFVAEAPPKNQSTKP 82
>ref|XP_753396.1| small nuclear ribonucleoprotein LSM3 [Aspergillus fumigatus Af293]
gb|EAL91358.1| small nuclear ribonucleoprotein (LSM3), putative [Aspergillus
fumigatus Af293]
Length = 83
Score = 37.4 bits (85), Expect = 0.49
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 421
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 37.4 bits (85), Expect = 0.49
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 421
PL ++ +S+ + V + R +++L GR+ A+D HCN+VL +V E
Sbjct: 15 PLDLVRLSL--DEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>emb|CAF30704.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
ref|NP_988268.1| Small nuclear ribonucleoprotein (Sm protein) [Methanococcus
maripaludis S2]
Length = 72
Score = 37.0 bits (84), Expect = 0.63
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL L S+ NT V + ++ K + GR++A+D H N+ LEN K ++K
Sbjct: 7 PLDALGKSI--NTNVTVYLKDGKVVKGRLKAYDLHMNVALENA--------KIENDEEKE 56
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
P+ + +RGD+V+ V
Sbjct: 57 FPM--------LVVRGDNVLYV 70
>dbj|BAB65770.1| 79aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus
tokodaii str. 7]
ref|NP_376661.1| hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii
str. 7]
Length = 79
Score = 37.0 bits (84), Expect = 0.63
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 334
VL+ + +K + G ++++D H N+VLEN E+ ++ R + + +
Sbjct: 21 VLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSD--------------GSTRKVGTIII 66
Query: 333 RGDSVIIV 310
RGD+VI+V
Sbjct: 67 RGDNVILV 74
>ref|XP_476727.1| putative snRNP(small nuclear ribonucleoprotein associated protein)
[Oryza sativa (japonica cultivar-group)]
Length = 261
Score = 36.6 bits (83), Expect = 0.83
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ + ++ ++L+G+ AFDRH N+VL + E P K K + R +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--SKSSKTTGEREERRTLGL 71
Query: 342 MFLRGDSVI 316
+ LRG+ V+
Sbjct: 72 LLLRGEEVV 80
>ref|XP_382912.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
gb|EAA69460.1| hypothetical protein FG02736.1 [Gibberella zeae PH-1]
Length = 795
Score = 36.6 bits (83), Expect = 0.83
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVP--------KTGKGKKKALPV 367
N V + R +++L G++ A+D HCN+VL V E V KT K + L V
Sbjct: 23 NEVVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDDDDELKTISRKSEMLFV 82
Query: 366 NKDRFISK 343
FI K
Sbjct: 83 RAGAFIDK 90
>gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 35.8 bits (81), Expect = 1.4
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 337
+V + ++ + L+G AFD+H N+VL E PKT KG+ + R + +
Sbjct: 14 RVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKT-KGEPER---QTKRILGLVI 69
Query: 336 LRGDSVIIV 310
+RG++++ +
Sbjct: 70 IRGENIVSI 78
>gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM 639]
Length = 79
Score = 35.8 bits (81), Expect = 1.4
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 334
VL+ + K + G ++++D H N+VLEN E+ + R + + +
Sbjct: 23 VLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMND--------------GSTRKVGTIVI 68
Query: 333 RGDSVIIV 310
RGD+VI+V
Sbjct: 69 RGDNVILV 76
>ref|ZP_01153713.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gb|EAR49286.1| Like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
Length = 72
Score = 35.8 bits (81), Expect = 1.4
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL +L S+ N+ V++ ++ + G ++ +D H N+VLEN E+ G +K
Sbjct: 6 PLDILNESL--NSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEI-----AEGTARK-- 56
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
I + +RGD+V+ +
Sbjct: 57 --------IGAVIVRGDNVVYI 70
>gb|AAW72075.1| NADH dehydrogenase subunit 2 [Scelotes anguina]
Length = 345
Score = 35.8 bits (81), Expect = 1.4
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
HLG+++ ++T +P NILL+NL+L+ L L ++ T IS+T W S T
Sbjct: 186 HLGWMAAVLTLAP--NILLLNLTLYIIMTISLFLLLMTT---ISKTIQDLSSTWLSSPTT 240
Query: 473 RPSSFLLLRQL 505
+ +LL L
Sbjct: 241 TAFTLILLMSL 251
>ref|YP_504465.1| Like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gb|ABD42746.1| Like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
Length = 80
Score = 35.4 bits (80), Expect = 1.8
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = -1
Query: 543 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVN 364
++ V N VLI+ + +++ G ++ +D H N+VL+ E +
Sbjct: 13 ILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEE---------------IVQG 57
Query: 363 KDRFISKMFLRGDSVIIVLRNPK 295
+ + I + +RGD+VI + NP+
Sbjct: 58 QAQSIGTLIIRGDNVIYISPNPQ 80
>dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 35.4 bits (80), Expect = 1.8
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
+T P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 11 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 61
Query: 384 KKALPVNKDRFISKMFLRGDSVIIV 310
K + ++ +RGD+VI V
Sbjct: 62 NKGV-------FDRILVRGDNVIFV 79
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein
ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 83
Score = 35.4 bits (80), Expect = 1.8
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = -1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGK 385
+T P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+
Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 57
Query: 384 KKALPVNKDRFISKMFLRGDSVIIV 310
K + ++ +RGD+VI V
Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
Length = 198
Score = 35.4 bits (80), Expect = 1.8
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ ++ ++L+G +AFDRH N++L + E KT K K + R +
Sbjct: 14 NYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRALGL 70
Query: 342 MFLRGDSVI 316
+ LRG+ V+
Sbjct: 71 VLLRGEHVV 79
>ref|XP_958507.1| hypothetical protein [Neurospora crassa N150]
ref|XP_329871.1| hypothetical protein [Neurospora crassa]
gb|EAA29271.1| hypothetical protein [Neurospora crassa]
Length = 168
Score = 35.4 bits (80), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVRE 421
V + R +++L GR+ A+D HCN+VL V E
Sbjct: 26 VCVKLRGDRELKGRLHAYDSHCNLVLGEVEE 56
>ref|YP_448199.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
Length = 81
Score = 35.0 bits (79), Expect = 2.4
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 418
PL L ++ N+QVLI + K+ G +++FD H N+VL + E+
Sbjct: 13 PLDALGQAL--NSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEI 56
>ref|XP_392871.2| PREDICTED: similar to ENSANGP00000007148 [Apis mellifera]
Length = 438
Score = 35.0 bits (79), Expect = 2.4
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N +V I ++++ +G +AFD+H N++L + E PK K ++ R +
Sbjct: 235 NYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPER----EDKRVLGF 290
Query: 342 MFLRGDSVI 316
+ LRG++++
Sbjct: 291 VLLRGENIV 299
>gb|EAA04750.3| ENSANGP00000018479 [Anopheles gambiae str. PEST]
ref|XP_308499.2| ENSANGP00000018479 [Anopheles gambiae str. PEST]
Length = 245
Score = 34.7 bits (78), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 558 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRA----FDRHCNMVLENVREMWT 412
GPL L ++ +V ++ R K + G V FD+H N+ L +V E WT
Sbjct: 121 GPLGQLQRWMEGRNRVRVSIRKQKGVRGHVSGVLELFDKHWNLALSDVCETWT 173
>ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 34.3 bits (77), Expect = 4.1
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKT----GKG 388
PL+++ + N V++ + +K+ G +R FD + NMVL++V+E + + G
Sbjct: 23 PLALIDKCIGNRIYVVM--KGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDMSGGNK 80
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
K K + VN+ + + L G++V +++ P PN
Sbjct: 81 KLKRVMVNR---LETILLSGNNVAMLV--PGGDPN 110
>gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
ref|NP_558846.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 34.3 bits (77), Expect = 4.1
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 418
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In A
New Crystal Form (C2221)
pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm Protein:
Implications For The Eukaryotic Snrnp Core
Length = 81
Score = 34.3 bits (77), Expect = 4.1
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 418
QVL+ R++ ++ G +R+FD+H N++LE+ E+
Sbjct: 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI 55
>gb|AAW45921.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
ref|XP_567438.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gb|EAL18439.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 195
Score = 34.3 bits (77), Expect = 4.1
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -1
Query: 507 INCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGK--GKKKALPVNKDRFISKMFL 334
+ + + L+G++ A+D+H N VL E T K K + A + R + + L
Sbjct: 11 VTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKKAKASSNEPAPTTQQKRTLGLVIL 70
Query: 333 RGDSVIIV 310
RG++++ V
Sbjct: 71 RGETIVSV 78
>ref|XP_523884.1| PREDICTED: similar to Transcription factor GATA-6 (GATA binding
factor-6) [Pan troglodytes]
Length = 718
Score = 34.3 bits (77), Expect = 4.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 481 AWPGSCF*SPL*HGARERAG---DVDRGPQDWQGQKEGSAC 368
AWP F +P+ H + RAG V RGP +G+ GS C
Sbjct: 333 AWPAGPFETPVLHSLQSRAGAPLPVPRGPSAGKGRASGSGC 373
>gb|EAA11463.2| ENSANGP00000007148 [Anopheles gambiae str. PEST]
ref|XP_315523.2| ENSANGP00000007148 [Anopheles gambiae str. PEST]
Length = 202
Score = 34.3 bits (77), Expect = 4.1
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 346
N +V I ++++ +G +AFD+H N++L + E PK K LP ++ R +
Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTK-----LPEREEKRVLG 68
Query: 345 KMFLRGDSVI 316
+ LRG +++
Sbjct: 69 FVLLRGGNIV 78
>gb|AAN37024.1| small nuclear ribonuclear protein, putative [Plasmodium falciparum
3D7]
ref|NP_702300.1| small nuclear ribonuclear protein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 33.9 bits (76), Expect = 5.4
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = -1
Query: 552 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAL 373
L + +M +++ I + +K+++G++ FD + NMVLE+V TE KK
Sbjct: 11 LPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDV----TEYTYANNVKK--- 63
Query: 372 PVNKDRFISKMFLRGDSVIIVL 307
VNK I K+ L G ++ I++
Sbjct: 64 -VNK---IKKLLLNGLNITIMV 81
>ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum]
Length = 121
Score = 33.9 bits (76), Expect = 5.4
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKT----GKG 388
PL+++ + N V++ + +K+ G +R FD + NMVL++V+E + + G
Sbjct: 29 PLALIDKCIGNRIYVVM--KGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNK 86
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVL 307
K K + VN+ + + L G++V +++
Sbjct: 87 KLKRVMVNR---LETILLSGNNVAMLV 110
>emb|CAE71635.1| Hypothetical protein CBG18602 [Caenorhabditis briggsae]
Length = 91
Score = 33.9 bits (76), Expect = 5.4
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = -1
Query: 564 STGPLSVLMMSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTG 394
ST P ++L + + + +++ + +N+K+++G + FD + NMVLE+V E T
Sbjct: 6 STNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDV----VEYENTA 61
Query: 393 KGKK 382
+GK+
Sbjct: 62 EGKR 65
>emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein
ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM 1728]
Length = 83
Score = 33.9 bits (76), Expect = 5.4
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
P+ VL ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ K
Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEII-------NGENKG 60
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
+ ++ +RGD+VI V
Sbjct: 61 V-------YDRVLVRGDNVIFV 75
>gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein
Length = 72
Score = 33.9 bits (76), Expect = 5.4
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK- 56
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
S + +RGD+V+ V
Sbjct: 57 --------FSSVVIRGDNVVYV 70
>ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein
gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
Length = 72
Score = 33.9 bits (76), Expect = 5.4
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K
Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56
Query: 375 LPVNKDRFISKMFLRGDSVIIV 310
S + +RGD+V+ V
Sbjct: 57 --------FSSVVIRGDNVVYV 70
>ref|XP_500142.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG84074.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 144
Score = 33.9 bits (76), Expect = 5.4
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -1
Query: 516 QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 382
+V++ R +K G +R+FD+ N+VL++ E + VP+ G++
Sbjct: 27 KVVVTLRGGRKFFGILRSFDQFANLVLQDTYEKYFAVPEKVYGEE 71
>ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoeba histolytica HM-1:IMSS]
gb|EAL47852.1| small nuclear ribonucleoprotein F, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 205
Score = 33.9 bits (76), Expect = 5.4
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N + + + +G+ AFD++ NM+L E T + K + +K+ +R +
Sbjct: 13 NYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTREEKEI-----ERSLGM 67
Query: 342 MFLRGDSV 319
M LRGD +
Sbjct: 68 MLLRGDCI 75
>ref|XP_786252.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Strongylocentrotus purpuratus]
Length = 204
Score = 33.5 bits (75), Expect = 7.0
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ +N ++ + +G AFD+H N+VL + E K+ K K + R +
Sbjct: 14 NYRMRVNLQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRAKSAKAPAK----EEKRVLGL 69
Query: 342 MFLRGDSVI 316
+ LRG+ ++
Sbjct: 70 VLLRGEHLV 78
>ref|XP_788645.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Strongylocentrotus purpuratus]
Length = 208
Score = 33.5 bits (75), Expect = 7.0
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 343
N ++ +N ++ + +G AFD+H N+VL + E K+ K K + R +
Sbjct: 18 NYRMRVNLQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRAKSAKAPAK----EEKRVLGL 73
Query: 342 MFLRGDSVI 316
+ LRG+ ++
Sbjct: 74 VLLRGEHLV 82
>ref|XP_710394.1| putative spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
ref|XP_710386.1| putative spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
gb|EAK91132.1| potential spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
gb|EAK91124.1| potential spliceosomal snRNA Sm core binding protein B/B' [Candida
albicans SC5314]
Length = 110
Score = 33.1 bits (74), Expect = 9.2
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = -1
Query: 537 MSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALP---- 370
MS N ++ I +N+ LG + +FD+H N+VL + E K+ KK P
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEES-RITKKSYSQLKKHTPNVEL 59
Query: 369 VNKDRFISKMFLRGDSVI 316
V R + + LRGD V+
Sbjct: 60 VYDKRNLGLIILRGDQVV 77
>ref|NP_506870.1| LSM Sm-like protein family member (lsm-5) [Caenorhabditis elegans]
emb|CAB03013.1| Hypothetical protein F28F8.3 [Caenorhabditis elegans]
Length = 91
Score = 33.1 bits (74), Expect = 9.2
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = -1
Query: 564 STGPLSVLMMSVKNN---TQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTG 394
ST P ++L + + + +++ + +N+K+++G + FD + NMVLE+V E T
Sbjct: 6 STNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDV----VEYENTA 61
Query: 393 KGKK 382
GK+
Sbjct: 62 DGKR 65
>gb|AAS56109.1| YER146W [Saccharomyces cerevisiae]
ref|NP_011073.1| Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p
and either Lsm1p or 8p): cytoplasmic Lsm1p complex
involved in mRNA decay; nuclear Lsm8p complex part of U6
snRNP and possibly involved in processing tRNA, snoRNA,
and rRNA; Lsm5p [Saccharomyces cerevisiae]
gb|AAB64673.1| Yer146wp [Saccharomyces cerevisiae]
sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5
Length = 93
Score = 33.1 bits (74), Expect = 9.2
Identities = 24/90 (26%), Positives = 47/90 (52%)
Frame = -1
Query: 555 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
PL V+ ++ N +VLI ++N++ G + FD N++LE+ E W P+ +K
Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPEDESRNEKV 64
Query: 375 LPVNKDRFISKMFLRGDSVIIVLRNPK*SP 286
+ + +M L G+++ I++ K +P
Sbjct: 65 M-----QHHGRMLLSGNNIAILVPGGKKTP 89
>ref|XP_746259.1| Plasmodium chabaudi chabaudi small nuclear ribonucleoprotein
[Plasmodium chabaudi chabaudi]
emb|CAH78091.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi]
Length = 88
Score = 33.1 bits (74), Expect = 9.2
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = -1
Query: 561 TGPLSVLMMSVKNNT--QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
T P++ + N T Q+ + + + ++ G++ FD + NMVL+ +E+
Sbjct: 13 TQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESKEI---------- 62
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVL 307
++ N + + K+ L+GD++ +++
Sbjct: 63 ---SIKKNTKKELGKILLKGDTITLIM 86
>gb|EAA06779.3| ENSANGP00000001657 [Anopheles gambiae str. PEST]
ref|XP_311331.2| ENSANGP00000001657 [Anopheles gambiae str. PEST]
Length = 269
Score = 33.1 bits (74), Expect = 9.2
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Frame = -2
Query: 509 SSIAATTRSCLAGFVLLIATVTWCS--------RTCGRCGQRSPXXXXXXXXXXXXXRID 354
SS ++ T SC +G + T CS +C C S
Sbjct: 123 SSCSSGTSSCRSGTSSCSSCTTSCSCCTSSSSTTSCSCCASSSSSCASSCSSCASSCSSC 182
Query: 353 SSARCSSGATRSSSC*GTPSDRPTGSQVSVENCS 252
+S+ CSSG T SSSC + S + S +CS
Sbjct: 183 ASS-CSSGTTSSSSCASSCSSSTSSSSSGTTSCS 215
>gb|AAR10110.1| similar to Drosophila melanogaster SmB [Drosophila yakuba]
Length = 199
Score = 33.1 bits (74), Expect = 9.2
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 346
N +V I ++++ +G +AFD+H N++L + E + + K +P ++ R +
Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLG 68
Query: 345 KMFLRGDSVI 316
+ LRG++++
Sbjct: 69 FVLLRGENIV 78
>ref|XP_502814.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG81002.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 164
Score = 33.1 bits (74), Expect = 9.2
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Frame = -1
Query: 537 MSVKNNTQV--LINCR------NNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 382
M V N T++ L+N R + K+++G++ AFDR+ N+VL + E + KK
Sbjct: 1 MIVPNKTKMADLVNYRLRVTTVDGKQMVGQMLAFDRYMNLVLSDCEEFRATKKSLLEAKK 60
Query: 381 KALPVNKD----------RFISKMFLRGDSVIIV 310
N D R + + LRG++V+ V
Sbjct: 61 TIQIENGDASSVSITEEKRTLGLVILRGETVVSV 94
>ref|NP_476921.1| Small ribonucleoprotein particle protein B CG5352-PA [Drosophila
melanogaster]
gb|AAL28719.1| LD14049p [Drosophila melanogaster]
gb|AAF52947.1| CG5352-PA [Drosophila melanogaster]
sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB)
gb|AAA28858.1| ribonucleoprotein
Length = 199
Score = 33.1 bits (74), Expect = 9.2
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 346
N +V I ++++ +G +AFD+H N++L + E + + K +P ++ R +
Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLG 68
Query: 345 KMFLRGDSVI 316
+ LRG++++
Sbjct: 69 FVLLRGENIV 78
>gb|EAL34232.1| GA18820-PA [Drosophila pseudoobscura]
Length = 199
Score = 33.1 bits (74), Expect = 9.2
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -1
Query: 522 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 346
N +V I ++++ +G +AFD+H N++L + E + + K +P ++ R +
Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLG 68
Query: 345 KMFLRGDSVI 316
+ LRG++++
Sbjct: 69 FVLLRGENIV 78
>ref|XP_607245.2| PREDICTED: similar to Amiloride-sensitive sodium channel
delta-subunit (Epithelial Na+ channel delta subunit)
(Delta ENaC) (Nonvoltage-gated sodium channel 1 delta
subunit) (SCNED) (Delta NaCH) [Bos taurus]
Length = 881
Score = 33.1 bits (74), Expect = 9.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 355 SILVHRQSLLFALASLGDLCPHLPHVLEHHVTV 453
++ VH + LF +L D+ PH PH+ HH+ V
Sbjct: 394 TVSVHSERKLFPSVTLCDMNPHRPHLARHHLRV 426
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,429,532,301
Number of Sequences: 3454138
Number of extensions: 29731813
Number of successful extensions: 72253
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 69566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72146
length of database: 1,185,965,366
effective HSP length: 126
effective length of database: 750,743,978
effective search space used: 76575885756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)