BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QCM3d10.yg.2.1 (683 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|33092487|gb|CF052481.1|CF052481 QCM3d10.yg QCM Zea mays cDNA ... 1185 0.0 gi|21213156|gb|AY109435.1| Zea mays CL790_1 mRNA sequence 1112 0.0 gi|21213156|gb|AY109435.1| Zea mays CL790_1 mRNA sequence 1112 0.0 gi|87157767|gb|DY402556.1|DY402556 V-946-5C-D12.Gal4-R UGV-Reseq... 547 e-154 gi|22521643|gb|BU080454.1|BU080454 946156F11.y1 946 - tassel pri... 519 e-145 gi|26559269|gb|CA831504.1|CA831504 1117020D12.y1 1117 - Unigene ... 500 e-139 gi|32790582|gb|CD942818.1|CD942818 RCE_22 GeneTag1 Zea mays cDNA... 309 2e-82 gi|32800563|gb|CD952799.1|CD952799 SBE_21 GeneTag2 Zea mays cDNA... 309 2e-82 gi|67029135|gb|CO457884.1|CO457884 MZCCL20015F11.g Maize Endospe... 252 5e-65 gi|6760485|gb|AW324644.1|AW324644 707028B09.x1 707 - Mixed adult... 204 1e-50 gi|78180097|gb|DV550470.1|DV550470 1000056-G10.GAD10-F UGI-Reseq... 190 2e-46 gi|12045931|gb|BF728161.1|BF728161 1000056G10.x2 1000 - Unigene ... 188 6e-46 gi|71425833|gb|DR806924.1|DR806924 ZM_BFb0033A11.r ZM_BFb Zea ma... 153 3e-35 gi|60347549|gb|DN214522.1|DN214522 MEST860_B01.T7-1 UGA-ZmSAM-XZ... 117 2e-24 gi|71435051|gb|DR816101.1|DR816101 ZM_BFb0047B11.r ZM_BFb Zea ma... 115 8e-24 gi|21212675|gb|AY109213.1| Zea mays PCO089295 mRNA sequence 98 2e-18 gi|21212675|gb|AY109213.1| Zea mays PCO089295 mRNA sequence 98 2e-18 gi|168625|gb|M97550.1|MZESUCPHO Maize sucrose phosphate synthase... 44 0.023 gi|21213345|gb|AY109574.1| Zea mays CL2428_1 mRNA sequence 44 0.023 gi|168625|gb|M97550.1|MZESUCPHO Maize sucrose phosphate synthase... 44 0.023 gi|21213345|gb|AY109574.1| Zea mays CL2428_1 mRNA sequence 44 0.023 gi|19272537|gb|BM888793.1|BM888793 952069E05.x1 952 - BMS tissue... 38 1.4 gi|91206506|gb|AC184854.1| Zea mays chromosome UNK clone CH201-2... 38 1.4 gi|55975247|gb|AC152918.1| Zea mays chromosome 4 clone Z464F01 m... 38 1.4 gi|41014699|gb|AC146950.2| Zea mays clone ZMMBBc0464F01, *** SEQ... 38 1.4 gi|14311484|gb|BG901239.1|BG901239 950001G03.x2 950 - Mature pol... 36 5.6 gi|32919237|gb|CF024049.1|CF024049 QBS13d01.xg QBS Zea mays cDNA... 36 5.6 >gi|33092487|gb|CF052481.1|CF052481 QCM3d10.yg QCM Zea mays cDNA clone QCM3d10, mRNA sequence Length = 662 Score = 1185 bits (598), Expect = 0.0 Identities = 638/658 (96%) Strand = Plus / Plus Query: 1 acgcgggatgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 acgcgggatgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgt 61 Query: 61 ggtgtgagctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggag 120 ||||||||||||||||||||| | | |||||||||||||||||||||||||||| Sbjct: 62 ggtgtgagctgctttggtcgttacatttttcgtatgattgcaatccctcctggcatggag 121 Query: 121 tttagtcatatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tttagtcatatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggc 181 Query: 181 tcaggttcaccagatccacctatttgggctgatataatgcgcttcttctcaaacccccgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tcaggttcaccagatccacctatttgggctgatataatgcgcttcttctcaaacccccgg 241 Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 301 Query: 301 aaagcatttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatgggg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 aaagcatttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatgggg 361 Query: 361 aatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 aatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactc 421 Query: 421 aagttaattgataaatatgatctatatggacaagtggcataccccaagcaccataagcaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 aagttaattgataaatatgatctatatggacaagtggcataccccaagcaccataagcaa 481 Query: 481 tctgaagttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatcaattgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 tctgaagttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatcaattgt 541 Query: 541 gcattggttgaaccatttggactcaccttgattgaggntnnngcatatggtctacccatg 600 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 542 gcattggttgaaccatttggactcaccttgattgaggctgctgcatatggtctacccatg 601 Query: 601 nnnnncacccgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658 ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 602 gttgccacccgaaatggtgggcctgtggacatacatcgggttcttgataatggaattc 659 >gi|21213156|gb|AY109435.1| Zea mays CL790_1 mRNA sequence Length = 3577 Score = 1112 bits (561), Expect = 0.0 Identities = 621/651 (95%) Strand = Plus / Plus Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 1385 Query: 68 gctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggagtttagtc 127 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct: 1386 gctgctttggtcgttacatgccccgtatgattgcaatccctcctggcatggagtttagtc 1445 Query: 128 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 1505 Query: 188 caccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaa 247 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1506 caccagatccacctatttgggctgatataatgcgcttcttctcaaannnnnggaagccaa 1565 Query: 248 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 1625 Query: 308 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 1685 Query: 368 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 1745 Query: 428 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 1805 Query: 488 ttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatcaattgtgcattgg 547 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1806 ttcctgatatttatcgtttagctgcgagaacaaaaggagnnnnnatcaattgtgcattgg 1865 Query: 548 ttgaaccatttggactcaccttgattgaggntnnngcatatggtctacccatgnnnnnca 607 |||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct: 1866 ttgaaccatttggactcaccttgattgaggctgctgcatatggtctacccatggttgcca 1925 Query: 608 cccgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658 ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1926 cccgaaatggtgggcctgtggacatacatcgggttcttgataatggaattc 1976 >gi|21213156|gb|AY109435.1| Zea mays CL790_1 mRNA sequence Length = 3577 Score = 1112 bits (561), Expect = 0.0 Identities = 621/651 (95%) Strand = Plus / Plus Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 1385 Query: 68 gctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggagtttagtc 127 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct: 1386 gctgctttggtcgttacatgccccgtatgattgcaatccctcctggcatggagtttagtc 1445 Query: 128 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 1505 Query: 188 caccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaa 247 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1506 caccagatccacctatttgggctgatataatgcgcttcttctcaaannnnnggaagccaa 1565 Query: 248 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 1625 Query: 308 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 1685 Query: 368 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 1745 Query: 428 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 1805 Query: 488 ttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatcaattgtgcattgg 547 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1806 ttcctgatatttatcgtttagctgcgagaacaaaaggagnnnnnatcaattgtgcattgg 1865 Query: 548 ttgaaccatttggactcaccttgattgaggntnnngcatatggtctacccatgnnnnnca 607 |||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct: 1866 ttgaaccatttggactcaccttgattgaggctgctgcatatggtctacccatggttgcca 1925 Query: 608 cccgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658 ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1926 cccgaaatggtgggcctgtggacatacatcgggttcttgataatggaattc 1976 >gi|87157767|gb|DY402556.1|DY402556 V-946-5C-D12.Gal4-R UGV-Reseq Zea mays cDNA, mRNA sequence Length = 587 Score = 547 bits (276), Expect = e-154 Identities = 301/313 (96%) Strand = Plus / Plus Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 237 Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 297 Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaagga 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaagga 357 Query: 526 gtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggntnnngca 585 ||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| Sbjct: 358 gtttttatcaattgtgcattgattgaaccatttggactcaccttgattgaggctgctgca 417 Query: 586 tatggtctacccatgnnnnncacccgaaatggtgggcctgtnnacatacatcgggttctt 645 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 418 tatggtctacccatggttgccacccgaaatggtgggcctgtggacatacatcgggttctt 477 Query: 646 gataatggaattc 658 ||||||||||||| Sbjct: 478 gataatggaattc 490 Score = 303 bits (153), Expect = 2e-80 Identities = 153/153 (100%) Strand = Plus / Plus Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 60 Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttggt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttggt 120 Query: 313 gaacatcgtgaactgagaaatttagcaaatctt 345 ||||||||||||||||||||||||||||||||| Sbjct: 121 gaacatcgtgaactgagaaatttagcaaatctt 153 >gi|22521643|gb|BU080454.1|BU080454 946156F11.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence Length = 610 Score = 519 bits (262), Expect = e-145 Identities = 290/303 (95%) Strand = Plus / Plus Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 367 Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 368 ttgacttcagcactcaagttaattgataaatatgatctatatggacaaggggcatacccc 427 Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaagga 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 428 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaagga 487 Query: 526 gtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggntnnngca 585 ||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| Sbjct: 488 gtttttatcaattgtgcattgattgaaccatttggactcaccttgattgaggctgctgca 547 Query: 586 tatggtctacccatgnnnnncacccgaaatggtgggcctgtnnacatacatcgggttctt 645 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 548 tatggtctacccatggttgccacccgaaatggtgggcctgtggacatacatcgggttctt 607 Query: 646 gat 648 ||| Sbjct: 608 gat 610 Score = 505 bits (255), Expect = e-141 Identities = 273/282 (96%) Strand = Plus / Plus Query: 64 gtgagctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggagttt 123 |||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct: 2 gtgagctgctttggtcgttacatgccccgtatgattgcaatccctcctggcatggagttt 61 Query: 124 agtcatatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 agtcatatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctca 121 Query: 184 ggttcaccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaag 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 ggttcaccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaag 181 Query: 244 ccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaa 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 ccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaa 241 Query: 304 gcatttggtgaacatcgtgaactgagaaatttagcaaatctt 345 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 gcatttggtgaacatcgtgaactgagaaatttagcaaatctt 283 >gi|26559269|gb|CA831504.1|CA831504 1117020D12.y1 1117 - Unigene V from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 544 Score = 500 bits (252), Expect = e-139 Identities = 252/252 (100%) Strand = Plus / Plus Query: 94 atgattgcaatccctcctggcatggagtttagtcatatagcaccacatgatgttgacctc 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27 atgattgcaatccctcctggcatggagtttagtcatatagcaccacatgatgttgacctc 86 Query: 154 gacagtgaggaaggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 gacagtgaggaaggaaatggagatggctcaggttcaccagatccacctatttgggctgat 146 Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 206 Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 266 Query: 334 ttagcaaatctt 345 |||||||||||| Sbjct: 267 ttagcaaatctt 278 Score = 452 bits (228), Expect = e-125 Identities = 231/232 (99%) Strand = Plus / Plus Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 362 Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 422 Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaagga 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaagga 482 Query: 526 gtttttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577 ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 483 gtttttatcaattgtgcattgattgaaccatttggactcaccttgattgagg 534 >gi|32790582|gb|CD942818.1|CD942818 RCE_22 GeneTag1 Zea mays cDNA, mRNA sequence Length = 156 Score = 309 bits (156), Expect = 2e-82 Identities = 156/156 (100%) Strand = Plus / Minus Query: 271 gatccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgaga 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 gatccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgaga 97 Query: 331 aatttagcaaatcttacactgatcatggggaatcgtgatgtcattgatgaaatgtcaagc 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 aatttagcaaatcttacactgatcatggggaatcgtgatgtcattgatgaaatgtcaagc 37 Query: 391 acaaatgcagctgttttgacttcagcactcaagtta 426 |||||||||||||||||||||||||||||||||||| Sbjct: 36 acaaatgcagctgttttgacttcagcactcaagtta 1 >gi|32800563|gb|CD952799.1|CD952799 SBE_21 GeneTag2 Zea mays cDNA, mRNA sequence Length = 156 Score = 309 bits (156), Expect = 2e-82 Identities = 156/156 (100%) Strand = Plus / Minus Query: 271 gatccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgaga 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 gatccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgaga 97 Query: 331 aatttagcaaatcttacactgatcatggggaatcgtgatgtcattgatgaaatgtcaagc 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 aatttagcaaatcttacactgatcatggggaatcgtgatgtcattgatgaaatgtcaagc 37 Query: 391 acaaatgcagctgttttgacttcagcactcaagtta 426 |||||||||||||||||||||||||||||||||||| Sbjct: 36 acaaatgcagctgttttgacttcagcactcaagtta 1 >gi|67029135|gb|CO457884.1|CO457884 MZCCL20015F11.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 940 Score = 252 bits (127), Expect = 5e-65 Identities = 168/184 (91%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 475 aagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatc 534 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52 aagcaatctgat-ttcatgatatttatcgtttagctgcgagaacaaaaggagtttttatc 110 Query: 535 aattgtgcattggttgaaccatttggactcaccttgattgaggntnnngcatatggtcta 594 |||||||||||| | |||||||||||||||||||||||||||| | |||||||||||| Sbjct: 111 aattgtgcattgatcgaaccatttggactcaccttgattgaggctgctgcatatggtcta 170 Query: 595 cccatgnnnnncacccgaaatggtgggcctgtnnacatacatcgggttcttgataatgga 654 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 171 cccatggttgccacccgaaatggtgggcctgtggacatacatcgggttcttgataatgga 230 Query: 655 attc 658 |||| Sbjct: 231 attc 234 >gi|6760485|gb|AW324644.1|AW324644 707028B09.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence Length = 591 Score = 204 bits (103), Expect = 1e-50 Identities = 125/136 (91%) Strand = Plus / Plus Query: 523 ggagtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggntnnn 582 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 176 ggagtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggctgct 235 Query: 583 gcatatggtctacccatgnnnnncacccgaaatggtgggcctgtnnacatacatcgggtt 642 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 236 gcatatggtctacccatggttgccacccgaaatggtgggcctgtggacatacatcgggtt 295 Query: 643 cttgataatggaattc 658 |||||||||||||||| Sbjct: 296 cttgataatggaattc 311 >gi|78180097|gb|DV550470.1|DV550470 1000056-G10.GAD10-F UGI-Reseq Zea mays cDNA, mRNA sequence Length = 345 Score = 190 bits (96), Expect = 2e-46 Identities = 125/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 523 ggagtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggntnnn 582 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 188 ggagtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggctgct 247 Query: 583 gcatatggtctacccatgnnnnncacccgaaatggtgggcctgtnnacatacatc-gggt 641 |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| Sbjct: 248 gcatatggtctacccatggttgccacccgaaatggtgggcctgtggacatacatcggggt 307 Query: 642 tcttgataatggaattc 658 ||||||||||||||||| Sbjct: 308 tcttgataatggaattc 324 >gi|12045931|gb|BF728161.1|BF728161 1000056G10.x2 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 600 Score = 188 bits (95), Expect = 6e-46 Identities = 123/136 (90%) Strand = Plus / Plus Query: 523 ggagtttttatcaattgtgcattggttgaaccatttggactcaccttgattgaggntnnn 582 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct: 158 ggagtttttatcaattgtgcattttttgaaccatttggactcaccttgattgaggctgct 217 Query: 583 gcatatggtctacccatgnnnnncacccgaaatggtgggcctgtnnacatacatcgggtt 642 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 218 gcatatggtctacccatggttgccacccgaaatggtgggcctgtggacatacatcgggtt 277 Query: 643 cttgataatggaattc 658 |||||||||||||||| Sbjct: 278 cttgataatggaattc 293 >gi|71425833|gb|DR806924.1|DR806924 ZM_BFb0033A11.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 816 Score = 153 bits (77), Expect = 3e-35 Identities = 99/110 (90%) Strand = Plus / Plus Query: 549 tgaaccatttggactcaccttgattgaggntnnngcatatggtctacccatgnnnnncac 608 ||||||||||||||||||||||||||||| | |||||||||||||||||| ||| Sbjct: 506 tgaaccatttggactcaccttgattgaggctgctgcatatggtctacccatggttgccac 565 Query: 609 ccgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658 |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 566 ccgaaatggtgggcctgtggacatacatcgggttcttgataatggaattc 615 >gi|60347549|gb|DN214522.1|DN214522 MEST860_B01.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 748 Score = 117 bits (59), Expect = 2e-24 Identities = 81/92 (88%) Strand = Plus / Plus Query: 567 cttgattgaggntnnngcatatggtctacccatgnnnnncacccgaaatggtgggcctgt 626 ||||||||||| | |||||||||||||||||| ||||||||||||||||||||| Sbjct: 1 cttgattgaggctgctgcatatggtctacccatggttgccacccgaaatggtgggcctgt 60 Query: 627 nnacatacatcgggttcttgataatggaattc 658 |||||||||||||||||||||||||||||| Sbjct: 61 ggacatacatcgggttcttgataatggaattc 92 >gi|71435051|gb|DR816101.1|DR816101 ZM_BFb0047B11.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 565 Score = 115 bits (58), Expect = 8e-24 Identities = 109/126 (86%) Strand = Plus / Plus Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455 ||||||||||||||| |||| || | || |||||| |||| ||| ||||||| ||||| Sbjct: 33 tgcagctgttttgacatcagtgcttacattgattgatgaatacgatttatatggtcaagt 92 Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515 ||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || || Sbjct: 93 ggcatacccaaagcatcacaagcactctgaagttcctgatatttatcgtttagcagcaag 152 Query: 516 aacaaa 521 |||||| Sbjct: 153 aacaaa 158 >gi|21212675|gb|AY109213.1| Zea mays PCO089295 mRNA sequence Length = 620 Score = 97.6 bits (49), Expect = 2e-18 Identities = 70/77 (90%) Strand = Plus / Plus Query: 445 tatggacaagtggcataccccaagcaccataagcaatctgaagttcctgatatttatcgt 504 ||||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||| Sbjct: 16 tatggtcaagtggcataccccaagcatcataaacactcagaagttcctgacatttatcgt 75 Query: 505 ttagctgcgagaacaaa 521 |||||||| |||||||| Sbjct: 76 ttagctgcaagaacaaa 92 >gi|21212675|gb|AY109213.1| Zea mays PCO089295 mRNA sequence Length = 620 Score = 97.6 bits (49), Expect = 2e-18 Identities = 70/77 (90%) Strand = Plus / Plus Query: 445 tatggacaagtggcataccccaagcaccataagcaatctgaagttcctgatatttatcgt 504 ||||| |||||||||||||||||||| ||||| || || ||||||||||| ||||||||| Sbjct: 16 tatggtcaagtggcataccccaagcatcataaacactcagaagttcctgacatttatcgt 75 Query: 505 ttagctgcgagaacaaa 521 |||||||| |||||||| Sbjct: 76 ttagctgcaagaacaaa 92 >gi|168625|gb|M97550.1|MZESUCPHO Maize sucrose phosphate synthase mRNA, complete cds Length = 3509 Score = 44.1 bits (22), Expect = 0.023 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311 ||||||||||| |||||||| || |||||||| ||||| Sbjct: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttgg 1643 >gi|21213345|gb|AY109574.1| Zea mays CL2428_1 mRNA sequence Length = 3509 Score = 44.1 bits (22), Expect = 0.023 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311 ||||||||||| |||||||| || |||||||| ||||| Sbjct: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttgg 1643 >gi|168625|gb|M97550.1|MZESUCPHO Maize sucrose phosphate synthase mRNA, complete cds Length = 3509 Score = 44.1 bits (22), Expect = 0.023 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311 ||||||||||| |||||||| || |||||||| ||||| Sbjct: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttgg 1643 >gi|21213345|gb|AY109574.1| Zea mays CL2428_1 mRNA sequence Length = 3509 Score = 44.1 bits (22), Expect = 0.023 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311 ||||||||||| |||||||| || |||||||| ||||| Sbjct: 1606 ccgaagaagaacatcactaccctcgtcaaagcgtttgg 1643 >gi|19272537|gb|BM888793.1|BM888793 952069E05.x1 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 449 Score = 38.2 bits (19), Expect = 1.4 Identities = 97/123 (78%) Strand = Plus / Minus Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252 |||||| |||||||| ||| |||||||| |||||| |||| || |||| || |||| | Sbjct: 209 gatccatctatttggtttgagataatgcggttcttcacaaatcctaggaaacctatgaat 150 Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttggt 312 || ||| |||| ||||| || | ||||||||||| | || || || || ||||||||| Sbjct: 149 ctggctattgcccgtccatatgctgagaagaatatcgcaacgcttgtgaaggcatttggt 90 Query: 313 gaa 315 ||| Sbjct: 89 gaa 87 >gi|91206506|gb|AC184854.1| Zea mays chromosome UNK clone CH201-242F17; ZMMBBc0242F17, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces Length = 183273 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 178 ggctcaggttcaccagatc 196 ||||||||||||||||||| Sbjct: 152361 ggctcaggttcaccagatc 152379 >gi|55975247|gb|AC152918.1| Zea mays chromosome 4 clone Z464F01 map 4S, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces Length = 168668 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 178 ggctcaggttcaccagatc 196 ||||||||||||||||||| Sbjct: 167352 ggctcaggttcaccagatc 167370 >gi|41014699|gb|AC146950.2| Zea mays clone ZMMBBc0464F01, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces Length = 172474 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 178 ggctcaggttcaccagatc 196 ||||||||||||||||||| Sbjct: 1917 ggctcaggttcaccagatc 1899 >gi|14311484|gb|BG901239.1|BG901239 950001G03.x2 950 - Mature pollen from Sheila McCormick's lab Zea mays cDNA, mRNA sequence Length = 531 Score = 36.2 bits (18), Expect = 5.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 516 aacaaaaggagtttttat 533 |||||||||||||||||| Sbjct: 53 aacaaaaggagtttttat 70 >gi|32919237|gb|CF024049.1|CF024049 QBS13d01.xg QBS Zea mays cDNA clone QBS13d01, mRNA sequence Length = 294 Score = 36.2 bits (18), Expect = 5.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 253 cttgctcttgctcgtccg 270 |||||||||||||||||| Sbjct: 92 cttgctcttgctcgtccg 109 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 194,505 Number of Sequences: 836351 Number of extensions: 194505 Number of successful extensions: 15025 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 14970 Number of HSP's gapped (non-prelim): 52 length of query: 683 length of database: 669,372,029 effective HSP length: 19 effective length of query: 664 effective length of database: 653,481,360 effective search space: 433911623040 effective search space used: 433911623040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)