BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QCM12h10.yg.2.1 (339 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|89763915|gb|DY690909.1|DY690909 ZM_BFb0290G18.f ZM_BFb Zea ma... 125 4e-27 gi|31355839|gb|CD440196.1|CD440196 EL01N0551H11.b Endosperm_5 Ze... 52 5e-05 gi|32834035|gb|CD973713.1|CD973713 QAE37h07.yg QAE Zea mays cDNA... 52 5e-05 gi|32834290|gb|CD973968.1|CD973968 QAE40a10.yg QAE Zea mays cDNA... 52 5e-05 gi|32834535|gb|CD974213.1|CD974213 QAE43b03.yg QAE Zea mays cDNA... 52 5e-05 gi|32835681|gb|CD975359.1|CD975359 QAE56f05.yg QAE Zea mays cDNA... 52 5e-05 gi|32932643|gb|CF037455.1|CF037455 QCG7b03.yg QCG Zea mays cDNA ... 52 5e-05 gi|33094400|gb|CF054394.1|CF054394 QCN28g07.yg QCN Zea mays cDNA... 52 5e-05 gi|67021750|gb|CO450499.1|CO450499 MZCCL10150A08.g Maize Endospe... 52 5e-05 gi|21206995|gb|AY103917.1| Zea mays PCO084143 mRNA sequence 52 5e-05 gi|21206995|gb|AY103917.1| Zea mays PCO084143 mRNA sequence 52 5e-05 gi|32934593|gb|CF039405.1|CF039405 QCH36b08.yg QCH Zea mays cDNA... 44 0.011 gi|74241815|gb|DT649729.1|DT649729 ZM_BFb0112K07.r ZM_BFb Zea ma... 40 0.17 gi|23357772|gb|BU645421.1|BU645421 946183H09.y1 946 - tassel pri... 36 2.7 gi|32799098|gb|CD951334.1|CD951334 SAV_90 GeneTag2 Zea mays cDNA... 36 2.7 gi|32799158|gb|CD951394.1|CD951394 SAW_182 GeneTag2 Zea mays cDN... 36 2.7 gi|92900867|gb|AC185474.1| Zea mays chromosome 4 clone CH201-235... 36 2.7 gi|92900807|gb|AC185471.1| Zea mays chromosome 4 clone CH201-266... 36 2.7 gi|92110175|gb|AC185312.1| Zea mays chromosome UNK clone CH201-3... 36 2.7 gi|91982820|gb|AC185276.1| Zea mays chromosome UNK clone CH201-3... 36 2.7 gi|58082344|gb|AC155484.2| Zea mays strain B73 clone ZMMBBc0011E... 36 2.7 gi|37591288|gb|AC146763.2| Zea mays clone ZMMBBc0060A01, WORKING... 36 2.7 >gi|89763915|gb|DY690909.1|DY690909 ZM_BFb0290G18.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 668 Score = 125 bits (63), Expect = 4e-27 Identities = 76/82 (92%) Strand = Plus / Plus Query: 1 acactgttttcaaccaatcaaaaccagannnnntaaaagcaaatggagccataatccatg 60 |||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 567 acactgttttcaaccaatcaaaaccagacggattagaagcaaatggagccataatccatg 626 Query: 61 ataccaccagaaaccagctaga 82 |||||||||||||||||||||| Sbjct: 627 ataccaccagaaaccagctaga 648 >gi|31355839|gb|CD440196.1|CD440196 EL01N0551H11.b Endosperm_5 Zea mays cDNA, mRNA sequence Length = 765 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Minus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 490 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 431 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 430 gcaccgccatgaaggattg 412 >gi|32834035|gb|CD973713.1|CD973713 QAE37h07.yg QAE Zea mays cDNA clone QAE37h07, mRNA sequence Length = 651 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 438 gcaccgccatgaaggattg 456 >gi|32834290|gb|CD973968.1|CD973968 QAE40a10.yg QAE Zea mays cDNA clone QAE40a10, mRNA sequence Length = 563 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 438 gcaccgccatgaaggattg 456 >gi|32834535|gb|CD974213.1|CD974213 QAE43b03.yg QAE Zea mays cDNA clone QAE43b03, mRNA sequence Length = 646 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 438 gcaccgccatgaaggattg 456 >gi|32835681|gb|CD975359.1|CD975359 QAE56f05.yg QAE Zea mays cDNA clone QAE56f05, mRNA sequence Length = 526 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 438 gcaccgccatgaaggattg 456 >gi|32932643|gb|CF037455.1|CF037455 QCG7b03.yg QCG Zea mays cDNA clone QCG7b03, mRNA sequence Length = 571 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 438 gcaccgccatgaaggattg 456 >gi|33094400|gb|CF054394.1|CF054394 QCN28g07.yg QCN Zea mays cDNA clone QCN28g07, mRNA sequence Length = 528 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 438 gcaccgccatgaaggattg 456 >gi|67021750|gb|CO450499.1|CO450499 MZCCL10150A08.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 894 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Minus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 274 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 215 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 214 gcaccgccatgaaggattg 196 >gi|21206995|gb|AY103917.1| Zea mays PCO084143 mRNA sequence Length = 1547 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Minus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 418 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 359 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 358 gcaccgccatgaaggattg 340 >gi|21206995|gb|AY103917.1| Zea mays PCO084143 mRNA sequence Length = 1547 Score = 52.0 bits (26), Expect = 5e-05 Identities = 65/79 (82%) Strand = Plus / Minus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 418 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 359 Query: 261 gcaccaccatgaaggattg 279 ||||| ||||||||||||| Sbjct: 358 gcaccgccatgaaggattg 340 >gi|32934593|gb|CF039405.1|CF039405 QCH36b08.yg QCH Zea mays cDNA clone QCH36b08, mRNA sequence Length = 563 Score = 44.1 bits (22), Expect = 0.011 Identities = 64/79 (81%) Strand = Plus / Plus Query: 201 taattttcagcaaaactcttgtgctgcacaacaaaaccacgnnnagtagcacggtatttt 260 |||||||||||||| | ||||| | ||||||||||| | ||||||||| || ||| Sbjct: 378 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 437 Query: 261 gcaccaccatgaaggattg 279 ||||| ||| ||||||||| Sbjct: 438 gcaccgccacgaaggattg 456 >gi|74241815|gb|DT649729.1|DT649729 ZM_BFb0112K07.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 717 Score = 40.1 bits (20), Expect = 0.17 Identities = 43/51 (84%) Strand = Plus / Minus Query: 188 agcatacagcntgtaattttcagcaaaactcttgtgctgcacaacaaaacc 238 |||||| ||| | || ||||||||||| |||| |||| |||||||||||| Sbjct: 86 agcatagagcctatagttttcagcaaacttcttatgctccacaacaaaacc 36 >gi|23357772|gb|BU645421.1|BU645421 946183H09.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence Length = 598 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 254 gtattttgcaccaccatg 271 |||||||||||||||||| Sbjct: 215 gtattttgcaccaccatg 198 >gi|32799098|gb|CD951334.1|CD951334 SAV_90 GeneTag2 Zea mays cDNA, mRNA sequence Length = 328 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 254 gtattttgcaccaccatg 271 |||||||||||||||||| Sbjct: 246 gtattttgcaccaccatg 229 >gi|32799158|gb|CD951394.1|CD951394 SAW_182 GeneTag2 Zea mays cDNA, mRNA sequence Length = 328 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 254 gtattttgcaccaccatg 271 |||||||||||||||||| Sbjct: 246 gtattttgcaccaccatg 229 >gi|92900867|gb|AC185474.1| Zea mays chromosome 4 clone CH201-235H14; ZMMBBc0235H14, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces Length = 183139 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 154 ttccaagctctattgcct 171 |||||||||||||||||| Sbjct: 93055 ttccaagctctattgcct 93072 >gi|92900807|gb|AC185471.1| Zea mays chromosome 4 clone CH201-266M17; ZMMBBc0266M17, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces Length = 172243 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 154 ttccaagctctattgcct 171 |||||||||||||||||| Sbjct: 126547 ttccaagctctattgcct 126530 >gi|92110175|gb|AC185312.1| Zea mays chromosome UNK clone CH201-321N9; ZMMBBc0321N09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces Length = 149133 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 tttcaaccaatcaaaacc 25 |||||||||||||||||| Sbjct: 121861 tttcaaccaatcaaaacc 121878 >gi|91982820|gb|AC185276.1| Zea mays chromosome UNK clone CH201-322M15; ZMMBBc0322M15, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces Length = 163620 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 254 gtattttgcaccaccatg 271 |||||||||||||||||| Sbjct: 88550 gtattttgcaccaccatg 88567 >gi|58082344|gb|AC155484.2| Zea mays strain B73 clone ZMMBBc0011E15, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces Length = 223931 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 tttcaaccaatcaaaacc 25 |||||||||||||||||| Sbjct: 15762 tttcaaccaatcaaaacc 15745 >gi|37591288|gb|AC146763.2| Zea mays clone ZMMBBc0060A01, WORKING DRAFT SEQUENCE, 3 unordered pieces Length = 174344 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 tttcaaccaatcaaaacc 25 |||||||||||||||||| Sbjct: 134195 tttcaaccaatcaaaacc 134212 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 77,521 Number of Sequences: 836351 Number of extensions: 77521 Number of successful extensions: 5376 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5343 Number of HSP's gapped (non-prelim): 33 length of query: 339 length of database: 669,372,029 effective HSP length: 19 effective length of query: 320 effective length of database: 653,481,360 effective search space: 209114035200 effective search space used: 209114035200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)