BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QBTB.064D08F020918.3.1 (559 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|78092124|gb|DV520498.1|DV520498 ZM_BFb0205G08.r ZM_BFb Zea ma... 983 0.0 gi|67021691|gb|CO450440.1|CO450440 MZCCL10148H06.g Maize Endospe... 84 2e-14 gi|28568882|gb|CB280757.1|CB280757 3529_1_14_1_E06.y_5 3529 - 2 ... 46 0.005 gi|55741096|gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, co... 38 1.2 gi|55741054|gb|AY664415.1| Zea mays cultivar B73 locus 9009, com... 38 1.2 gi|92797496|dbj|DD118803.1| MAIZE YELLOW STRIPE1 AND RELATED GENES 36 4.5 gi|25273648|emb|AX540651.1| Sequence 7 from Patent WO0240688 36 4.5 >gi|78092124|gb|DV520498.1|DV520498 ZM_BFb0205G08.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 814 Score = 983 bits (496), Expect = 0.0 Identities = 538/556 (96%) Strand = Plus / Plus Query: 1 gcttcagccgaagcttgtggtggaatcggagcttcttatccgagagcagacatggagcag 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 gcttcagccgcagcttgtggtggaatcggagcttcttatccgagagcagacatggagcag 294 Query: 61 agtagtgatgggttgccaatcagccagcggagggctaacagttcaacaaaacactcaagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 agtagtgatgggttgccaatcagccagcggagggctaacagttcaacaaaacactcaagc 354 Query: 121 aagtcagatgaggttgctgaagacatgttgcagagtaatataccacatgaaactgtggga 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 355 aagtcagatgaggttgctgaagacatgttgcagagtaatataccacatgaaactgtgaga 414 Query: 181 ctgtgccaaggcgtggaatcagaagagatagagggacctcctcacaagaaaattgtccag 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 ctgtgccaaggtgtggaatcagaagagatagagggacctcctcacaagaaaattgtccag 474 Query: 241 aacttcacggagagcagtagttccnnnnnnnnnnnncacagatggtcatcagaggaagat 300 |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 475 aacttcacggagagcagtagttccaaaaataaaaaacacagatggtcatcagaggaagat 534 Query: 301 gaggcactaaagcaaatggtaaaaagacatgggacgaaaaactggcgaactattgcatgt 360 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 535 gaggcactaaagcaaatggtaaaaaaatatgggacgaaaaactggcgaactattgcatgt 594 Query: 361 gctatacctggccgaaatgccaactcatgcctttcaagatggaagtaccttctagaccca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 gctatacctggccgaaatgccaactcatgcctttcaagatggaagtaccttctagaccca 654 Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 714 Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaatgatgca 540 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 715 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccagggaggacaaatgatgca 774 Query: 541 ctcaaagaacattgga 556 |||||||||||||||| Sbjct: 775 ctcaaagaacattgga 790 >gi|67021691|gb|CO450440.1|CO450440 MZCCL10148H06.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 850 Score = 83.8 bits (42), Expect = 2e-14 Identities = 117/142 (82%) Strand = Plus / Plus Query: 415 gacccagcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcg 474 |||||||||||||| ||| || |||||| |||||||||| |||| |||||| || || Sbjct: 121 gacccagcaataaagaaacaggattggtcagaacaggaggatctaaaattgattcgagct 180 Query: 475 cagcaagtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaat 534 || ||| | ||||||| | ||| ||||||||||||||||||||| || | ||||||| Sbjct: 181 catcaaatatatggaagtcagtggcttaaaatggtcaaacatttccctgggatgacaaat 240 Query: 535 gatgcactcaaagaacattgga 556 |||||||||||||||| |||| Sbjct: 241 catgcactcaaagaacactgga 262 >gi|28568882|gb|CB280757.1|CB280757 3529_1_14_1_E06.y_5 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence Length = 605 Score = 46.1 bits (23), Expect = 0.005 Identities = 29/31 (93%) Strand = Plus / Plus Query: 526 aggacaaatgatgcactcaaagaacattgga 556 ||||||||| |||||||||||||||| |||| Sbjct: 2 aggacaaatcatgcactcaaagaacactgga 32 >gi|55741096|gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 38.2 bits (19), Expect = 1.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 488 gaaacaaatggtgtaaaat 506 ||||||||||||||||||| Sbjct: 259198 gaaacaaatggtgtaaaat 259216 >gi|55741054|gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence Length = 323584 Score = 38.2 bits (19), Expect = 1.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 488 gaaacaaatggtgtaaaat 506 ||||||||||||||||||| Sbjct: 263141 gaaacaaatggtgtaaaat 263159 >gi|92797496|dbj|DD118803.1| MAIZE YELLOW STRIPE1 AND RELATED GENES Length = 82952 Score = 36.2 bits (18), Expect = 4.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 60 gagtagtgatgggttgcc 77 |||||||||||||||||| Sbjct: 80619 gagtagtgatgggttgcc 80602 >gi|25273648|emb|AX540651.1| Sequence 7 from Patent WO0240688 Length = 82952 Score = 36.2 bits (18), Expect = 4.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 60 gagtagtgatgggttgcc 77 |||||||||||||||||| Sbjct: 80619 gagtagtgatgggttgcc 80602 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 172,647 Number of Sequences: 836351 Number of extensions: 172647 Number of successful extensions: 12187 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12164 Number of HSP's gapped (non-prelim): 22 length of query: 559 length of database: 669,372,029 effective HSP length: 19 effective length of query: 540 effective length of database: 653,481,360 effective search space: 352879934400 effective search space used: 352879934400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)