BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QBTB.063F13F020916.3.1 (668 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|76284817|gb|DV024385.1|DV024385 ZM_BFb0144I16.r ZM_BFb Zea ma... 1277 0.0 gi|71432177|gb|DR813227.1|DR813227 ZM_BFb0042E15.r ZM_BFb Zea ma... 1249 0.0 gi|60342326|gb|DN209299.1|DN209299 MEST883_C05.T7-1 UGA-ZmSAM-XZ... 325 4e-87 gi|74232528|gb|DT640442.1|DT640442 ZM_BFb0098A18.r ZM_BFb Zea ma... 52 9e-05 gi|90186361|gb|AC183888.1| Zea mays chromosome UNK clone ZMMBBb-... 44 0.022 gi|89257718|gb|AC177840.2| Zea mays chromosome UNK clone CH201-5... 38 1.4 gi|37378975|gb|CF626212.1|CF626212 zmrws05_0B10-012-b04.s3 zmrws... 36 5.5 gi|76021107|gb|DT948277.1|DT948277 ZM_BFb0136P19.r ZM_BFb Zea ma... 36 5.5 gi|89249747|gb|DY621533.1|DY621533 ZM_BFb0283P15.f ZM_BFb Zea ma... 36 5.5 gi|92110177|gb|AC185314.1| Zea mays chromosome UNK clone CH201-3... 36 5.5 gi|90093417|gb|AC183825.1| Zea mays chromosome UNK clone CH201-1... 36 5.5 >gi|76284817|gb|DV024385.1|DV024385 ZM_BFb0144I16.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 705 Score = 1277 bits (644), Expect = 0.0 Identities = 664/668 (99%), Gaps = 2/668 (0%) Strand = Plus / Plus Query: 1 ggacagaggaaagatgagaagtaagtgcgccatggccatatcatcctccacctcgcgaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27 ggacagaggaaagatgagaagtaagtgcgccatggccatatcatcctccacctcgcgaac 86 Query: 61 acaagatctggtgccattgctgtgtctgttgctaatggcagcagcagcaccacagcatag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 acaagatctggtgccattgctgtgtctgttgctaatggcagcagcagcaccacagcatag 146 Query: 121 ttgtgcgtcgccgccgttgcctgtgacactcccagggtgccccgacaagtgcggcaacat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 ttgtgcgtcgccgccgttgcctgtgacactcccagggtgccccgacaagtgcggcaacat 206 Query: 181 aagcatcccctaccctttcggcaccaaggagggatgcttcaaacccgacttcgaggtcct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 aagcatcccctaccctttcggcaccaaggagggatgcttcaaacccgacttcgaggtcct 266 Query: 241 ctgcaacgacagcttccatccgcctcgcgccttcatccagatggcgggagcgaagatcac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 ctgcaacgacagcttccatccgcctcgcgccttcatccagatggcgggagcgaagatcac 326 Query: 301 cgtcgacgacacgtactacaagaccaacgaggacggcataccggacaatgatatcggaag 360 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 327 cgtcgacgacacgtactacaagaccaacgaggacggcatgccggacaatgatatcggaag 386 Query: 361 ttctgaatggccgatcgagctcgtcgacgtgtcggtctcggaggggaaagcgcgggtgct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 ttctgaatggccgatcgagctcgtcgacgtgtcggtctcggaggggaaagcgcgggtgct 446 Query: 421 cggcgccttcagctacgactgcaagatgaacgacacgtaccacgcggtgaggcggcagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cggcgccttcagctacgactgcaagatgaacgacacgtaccacgcggtgaggcggcagga 506 Query: 481 gatcgacttgggctactggatgccgttctccatgtcggacgccgatgatgtgctcatggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 gatcgacttgggctactggatgccgttctccatgtcggacgccgatgatgtgctcatggg 566 Query: 541 catcgggagcaacgtcgtcgccaagcagacatccggaccgcagtgccagtcctacctctt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 catcgggagcaacgtcgtcgccaagcagacatccggaccgcagtgccagtcctacctctt 626 Query: 601 ataccagctctccaccaggaagaacgacgaccccgtcaaccgggtcttgctctggggcag 660 ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 627 ataccagctctccaccaggaagaccgacgaccccgtcaa-cgggtcttgctct-gggcag 684 Query: 661 ggctgctg 668 |||||||| Sbjct: 685 ggctgctg 692 >gi|71432177|gb|DR813227.1|DR813227 ZM_BFb0042E15.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 771 Score = 1249 bits (630), Expect = 0.0 Identities = 650/654 (99%), Gaps = 2/654 (0%) Strand = Plus / Plus Query: 15 tgagaagtaagtgcgccatggccatatcatcctccacctcgcgaacacaagatctggtgc 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgagaagtaagtgcgccatggccatatcatcctccacctcgcgaacacaagatctggtgc 60 Query: 75 cattgctgtgtctgttgctaatggcagcagcagcaccacagcatagttgtgcgtcgccgc 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cattgctgtgtctgttgctaatggcagcagcagcaccacagcatagttgtgcgtcgccgc 120 Query: 135 cgttgcctgtgacactcccagggtgccccgacaagtgcggcaacataagcatcccctacc 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cgttgcctgtgacactcccagggtgccccgacaagtgcggcaacataagcatcccctacc 180 Query: 195 ctttcggcaccaaggagggatgcttcaaacccgacttcgaggtcctctgcaacgacagct 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctttcggcaccaaggagggatgcttcaaacccgacttcgaggtcctctgcaacgacagct 240 Query: 255 tccatccgcctcgcgccttcatccagatggcgggagcgaagatcaccgtcgacgacacgt 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tccatccgcctcgcgccttcatccagatggcgggagcgaagatcaccgtcgacgacacgt 300 Query: 315 actacaagaccaacgaggacggcataccggacaatgatatcggaagttctgaatggccga 374 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 301 actacaagaccaacgaggacggcatgccggacaatgatatcggaagttctgaatggccga 360 Query: 375 tcgagctcgtcgacgtgtcggtctcggaggggaaagcgcgggtgctcggcgccttcagct 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tcgagctcgtcgacgtgtcggtctcggaggggaaagcgcgggtgctcggcgccttcagct 420 Query: 435 acgactgcaagatgaacgacacgtaccacgcggtgaggcggcaggagatcgacttgggct 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acgactgcaagatgaacgacacgtaccacgcggtgaggcggcaggagatcgacttgggct 480 Query: 495 actggatgccgttctccatgtcggacgccgatgatgtgctcatgggcatcgggagcaacg 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 actggatgccgttctccatgtcggacgccgatgatgtgctcatgggcatcgggagcaacg 540 Query: 555 tcgtcgccaagcagacatccggaccgcagtgccagtcctacctcttataccagctctcca 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tcgtcgccaagcagacatccggaccgcagtgccagtcctacctcttataccagctctcca 600 Query: 615 ccaggaagaacgacgaccccgtcaaccgggtcttgctctggggcagggctgctg 668 ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 601 ccaggaagaccgacgaccccgtcaa-cgggtcttgctct-gggcagggctgctg 652 >gi|60342326|gb|DN209299.1|DN209299 MEST883_C05.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 626 Score = 325 bits (164), Expect = 4e-87 Identities = 181/184 (98%), Gaps = 2/184 (1%) Strand = Plus / Minus Query: 485 gacttgggctactggatgccgttctccatgtcggacgccgatgatgtgctcatgggcatc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 gacttgggctactggatgccgttctccatgtcggacgccgatgatgtgctcatgggcatc 567 Query: 545 gggagcaacgtcgtcgccaagcagacatccggaccgcagtgccagtcctacctcttatac 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 gggagcaacgtcgtcgccaagcagacatccggaccgcagtgccagtcctacctcttatac 507 Query: 605 cagctctccaccaggaagaacgacgaccccgtcaaccgggtcttgctctggggcagggct 664 ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| Sbjct: 506 cagctctccaccaggaagaccgacgaccccgtcaa-cgggtcttgctct-gggcagggct 449 Query: 665 gctg 668 |||| Sbjct: 448 gctg 445 >gi|74232528|gb|DT640442.1|DT640442 ZM_BFb0098A18.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 773 Score = 52.0 bits (26), Expect = 9e-05 Identities = 41/46 (89%) Strand = Plus / Plus Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203 |||| ||||| |||||||||||| | |||||||||||| ||||||| Sbjct: 203 tgccgcgacaggtgcggcaacattaccatcccctacccgttcggca 248 >gi|90186361|gb|AC183888.1| Zea mays chromosome UNK clone ZMMBBb-334E17; ZMMBBb0334E17, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces Length = 132702 Score = 44.1 bits (22), Expect = 0.022 Identities = 31/34 (91%) Strand = Plus / Minus Query: 170 tgcggcaacataagcatcccctaccctttcggca 203 ||||||||||| |||||||| ||||| ||||||| Sbjct: 54905 tgcggcaacatcagcatcccatacccattcggca 54872 >gi|89257718|gb|AC177840.2| Zea mays chromosome UNK clone CH201-57L1; ZMMBBc0057L01, *** SEQUENCING IN PROGRESS ***, 34 unordered pieces Length = 260558 Score = 38.2 bits (19), Expect = 1.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 335 ggcataccggacaatgata 353 ||||||||||||||||||| Sbjct: 144801 ggcataccggacaatgata 144819 >gi|37378975|gb|CF626212.1|CF626212 zmrws05_0B10-012-b04.s3 zmrws05 Zea mays cDNA 3', mRNA sequence Length = 664 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 59 acacaagatctggtgccattgc 80 |||||| ||||||||||||||| Sbjct: 94 acacaatatctggtgccattgc 115 >gi|76021107|gb|DT948277.1|DT948277 ZM_BFb0136P19.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 663 Score = 36.2 bits (18), Expect = 5.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 190 ctaccctttcggcaccaaggag 211 |||||| ||||||||||||||| Sbjct: 165 ctacccgttcggcaccaaggag 186 >gi|89249747|gb|DY621533.1|DY621533 ZM_BFb0283P15.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 457 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 98 gcagcagcagcaccacag 115 |||||||||||||||||| Sbjct: 369 gcagcagcagcaccacag 352 >gi|92110177|gb|AC185314.1| Zea mays chromosome UNK clone CH201-310M22; ZMMBBc0310M22, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces Length = 139744 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 336 gcataccggacaatgata 353 |||||||||||||||||| Sbjct: 85255 gcataccggacaatgata 85272 >gi|90093417|gb|AC183825.1| Zea mays chromosome UNK clone CH201-189H12; ZMMBBc0189H12, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces Length = 186251 Score = 36.2 bits (18), Expect = 5.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 41 tcatcctccacctcgcga 58 |||||||||||||||||| Sbjct: 92057 tcatcctccacctcgcga 92074 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 335,423 Number of Sequences: 836351 Number of extensions: 335423 Number of successful extensions: 27018 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26980 Number of HSP's gapped (non-prelim): 32 length of query: 668 length of database: 669,372,029 effective HSP length: 19 effective length of query: 649 effective length of database: 653,481,360 effective search space: 424109402640 effective search space used: 424109402640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)