BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QBTB.006E19F020311.3.1 (789 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|32934561|gb|CF039373.1|CF039373 QCH35f11.yg QCH Zea mays cDNA... 107 2e-21 gi|91982798|gb|AC185254.1| Zea mays chromosome UNK clone CH201-4... 88 2e-15 gi|92110175|gb|AC185312.1| Zea mays chromosome UNK clone CH201-3... 40 0.42 gi|4609465|gb|AI600304.1|AI600304 486069B05.x1 486 - leaf primor... 36 6.5 gi|4621550|gb|AI612383.1|AI612383 486081C04.x1 486 - leaf primor... 36 6.5 gi|5871545|gb|AW018016.1|AW018016 614065F11.x1 614 - root cDNA l... 36 6.5 gi|12968472|gb|BG265418.1|BG265418 1000025E09.x2 1000 - Unigene ... 36 6.5 gi|14208279|gb|BG841957.1|BG841957 MEST34-B09.T3 ISUM3-TL Zea ma... 36 6.5 gi|32810171|gb|CD962405.1|CD962405 SDN_9 GeneTag2 Zea mays cDNA,... 36 6.5 gi|32840115|gb|CD979796.1|CD979796 QAH1c07.sg QAH Zea mays cDNA ... 36 6.5 gi|32840116|gb|CD979797.1|CD979797 QAH1c07.xg QAH Zea mays cDNA ... 36 6.5 gi|32933134|gb|CF037946.1|CF037946 QCH14f07.yg QCH Zea mays cDNA... 36 6.5 gi|32940582|gb|CF045401.1|CF045401 QCK12g08.yg QCK Zea mays cDNA... 36 6.5 gi|67017376|gb|CO446125.1|CO446125 MZCCL10092H01.g Maize Endospe... 36 6.5 gi|71307125|gb|DR789737.1|DR789737 ZM_BFb0008G14.r ZM_BFb Zea ma... 36 6.5 gi|71311573|gb|DR792160.1|DR792160 ZM_BFb0011O12.r ZM_BFb Zea ma... 36 6.5 gi|74244082|gb|DT651996.1|DT651996 ZM_BFb0116J24.r ZM_BFb Zea ma... 36 6.5 gi|78023059|gb|DV491446.1|DV491446 1000025-E09.T7-1 UGI-Reseq Ze... 36 6.5 gi|78120520|gb|DV538904.1|DV538904 ZM_BFb0232I10.r ZM_BFb Zea ma... 36 6.5 gi|78122513|gb|DV540897.1|DV540897 ZM_BFb0235G21.r ZM_BFb Zea ma... 36 6.5 gi|93016986|gb|EB642506.1|EB642506 ZM_BFb0332O02.r ZM_BFb Zea ma... 36 6.5 gi|21216549|gb|AY111959.1| Zea mays CL36190_1 mRNA sequence 36 6.5 gi|21217155|gb|AY112565.1| Zea mays CL11866_1 mRNA sequence 36 6.5 gi|21217155|gb|AY112565.1| Zea mays CL11866_1 mRNA sequence 36 6.5 gi|21216549|gb|AY111959.1| Zea mays CL36190_1 mRNA sequence 36 6.5 gi|90855885|gb|AC184134.1| Zea mays chromosome UNK clone ZMMBBb-... 36 6.5 >gi|32934561|gb|CF039373.1|CF039373 QCH35f11.yg QCH Zea mays cDNA clone QCH35f11, mRNA sequence Length = 606 Score = 107 bits (54), Expect = 2e-21 Identities = 105/122 (86%) Strand = Plus / Plus Query: 446 ttcttcacatggatcatcgaacttcttttcccagttatgttgacatatctggtgtatgag 505 ||||||||||||||| | ||||| || || ||||| || || |||||||| ||||||||| Sbjct: 135 ttcttcacatggatcgttgaactactgtttccagtcatattaacatatctcgtgtatgag 194 Query: 506 aagcagcagaagctaaggattatgatgaaaatgcacggtctgaaggatgggccttactgg 565 ||||| |||||||| | ||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 195 aagcaacagaagctgaaaattatgatgaagatgcatggtctgaaggatggtccttattgg 254 Query: 566 ct 567 || Sbjct: 255 ct 256 Score = 42.1 bits (21), Expect = 0.11 Identities = 27/29 (93%) Strand = Plus / Plus Query: 701 ataaatttgcagattgcacttgcattttt 729 ||||| ||||||||| ||||||||||||| Sbjct: 390 ataaacttgcagatttcacttgcattttt 418 >gi|91982798|gb|AC185254.1| Zea mays chromosome UNK clone CH201-418N20; ZMMBBc0418N20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces Length = 173633 Score = 87.7 bits (44), Expect = 2e-15 Identities = 71/80 (88%) Strand = Plus / Minus Query: 488 acatatctggtgtatgagaagcagcagaagctaaggattatgatgaaaatgcacggtctg 547 |||||||| |||||||||||||| |||||||| | ||||||||||| ||||| |||||| Sbjct: 75790 acatatctcgtgtatgagaagcaacagaagctgaaaattatgatgaagatgcatggtctg 75731 Query: 548 aaggatgggccttactggct 567 |||||||| ||||| ||||| Sbjct: 75730 aaggatggtccttattggct 75711 Score = 42.1 bits (21), Expect = 0.11 Identities = 27/29 (93%) Strand = Plus / Minus Query: 701 ataaatttgcagattgcacttgcattttt 729 ||||| ||||||||| ||||||||||||| Sbjct: 75496 ataaacttgcagatttcacttgcattttt 75468 >gi|92110175|gb|AC185312.1| Zea mays chromosome UNK clone CH201-321N9; ZMMBBc0321N09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces Length = 149133 Score = 40.1 bits (20), Expect = 0.42 Identities = 38/44 (86%) Strand = Plus / Plus Query: 497 gtgtatgagaagcagcagaagctaaggattatgatgaaaatgca 540 ||||||||||| || |||||||||||| |||||||| ||||| Sbjct: 146610 gtgtatgagaaacaacagaagctaagggcaatgatgaagatgca 146653 >gi|4609465|gb|AI600304.1|AI600304 486069B05.x1 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 447 Score = 36.2 bits (18), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 164 cgaggaggacaaataaacgaat 185 |||||||||||||| ||||||| Sbjct: 23 cgaggaggacaaatgaacgaat 44 >gi|4621550|gb|AI612383.1|AI612383 486081C04.x1 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 340 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 501 atgagaagcagcagaagc 518 |||||||||||||||||| Sbjct: 291 atgagaagcagcagaagc 274 >gi|5871545|gb|AW018016.1|AW018016 614065F11.x1 614 - root cDNA library from Walbot Lab Zea mays cDNA, mRNA sequence Length = 554 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 83 atacagtgtgttgaaggt 100 |||||||||||||||||| Sbjct: 95 atacagtgtgttgaaggt 78 >gi|12968472|gb|BG265418.1|BG265418 1000025E09.x2 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 428 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 83 atacagtgtgttgaaggt 100 |||||||||||||||||| Sbjct: 228 atacagtgtgttgaaggt 211 >gi|14208279|gb|BG841957.1|BG841957 MEST34-B09.T3 ISUM3-TL Zea mays cDNA clone MEST34-B09 3', mRNA sequence Length = 539 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 502 tgagaagcagcagaagct 519 |||||||||||||||||| Sbjct: 92 tgagaagcagcagaagct 75 >gi|32810171|gb|CD962405.1|CD962405 SDN_9 GeneTag2 Zea mays cDNA, mRNA sequence Length = 207 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 651 ttttcagagtaaatgaat 668 |||||||||||||||||| Sbjct: 189 ttttcagagtaaatgaat 172 >gi|32840115|gb|CD979796.1|CD979796 QAH1c07.sg QAH Zea mays cDNA clone QAH1c07, mRNA sequence Length = 451 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 323 cagtgtgttgaaggtgct 306 >gi|32840116|gb|CD979797.1|CD979797 QAH1c07.xg QAH Zea mays cDNA clone QAH1c07, mRNA sequence Length = 338 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 337 cagtgtgttgaaggtgct 320 >gi|32933134|gb|CF037946.1|CF037946 QCH14f07.yg QCH Zea mays cDNA clone QCH14f07, mRNA sequence Length = 232 Score = 36.2 bits (18), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 606 atatgttattctttatgatttt 627 ||||||| |||||||||||||| Sbjct: 106 atatgttcttctttatgatttt 127 >gi|32940582|gb|CF045401.1|CF045401 QCK12g08.yg QCK Zea mays cDNA clone QCK12g08, mRNA sequence Length = 669 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 83 atacagtgtgttgaaggt 100 |||||||||||||||||| Sbjct: 19 atacagtgtgttgaaggt 2 >gi|67017376|gb|CO446125.1|CO446125 MZCCL10092H01.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 861 Score = 36.2 bits (18), Expect = 6.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 648 attttttcagagtaaatgaata 669 ||||||| |||||||||||||| Sbjct: 856 attttttaagagtaaatgaata 835 >gi|71307125|gb|DR789737.1|DR789737 ZM_BFb0008G14.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 740 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 693 cagtgtgttgaaggtgct 676 >gi|71311573|gb|DR792160.1|DR792160 ZM_BFb0011O12.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 772 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 701 cagtgtgttgaaggtgct 684 >gi|74244082|gb|DT651996.1|DT651996 ZM_BFb0116J24.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 811 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 701 cagtgtgttgaaggtgct 684 >gi|78023059|gb|DV491446.1|DV491446 1000025-E09.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence Length = 726 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 83 atacagtgtgttgaaggt 100 |||||||||||||||||| Sbjct: 295 atacagtgtgttgaaggt 278 >gi|78120520|gb|DV538904.1|DV538904 ZM_BFb0232I10.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 836 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 388 cagtgtgttgaaggtgct 371 >gi|78122513|gb|DV540897.1|DV540897 ZM_BFb0235G21.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 696 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 696 cagtgtgttgaaggtgct 679 >gi|93016986|gb|EB642506.1|EB642506 ZM_BFb0332O02.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 807 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 86 cagtgtgttgaaggtgct 103 |||||||||||||||||| Sbjct: 615 cagtgtgttgaaggtgct 598 >gi|21216549|gb|AY111959.1| Zea mays CL36190_1 mRNA sequence Length = 814 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 83 atacagtgtgttgaaggt 100 |||||||||||||||||| Sbjct: 703 atacagtgtgttgaaggt 720 >gi|21217155|gb|AY112565.1| Zea mays CL11866_1 mRNA sequence Length = 361 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 501 atgagaagcagcagaagc 518 |||||||||||||||||| Sbjct: 218 atgagaagcagcagaagc 201 >gi|21217155|gb|AY112565.1| Zea mays CL11866_1 mRNA sequence Length = 361 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 501 atgagaagcagcagaagc 518 |||||||||||||||||| Sbjct: 218 atgagaagcagcagaagc 201 >gi|21216549|gb|AY111959.1| Zea mays CL36190_1 mRNA sequence Length = 814 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 83 atacagtgtgttgaaggt 100 |||||||||||||||||| Sbjct: 703 atacagtgtgttgaaggt 720 >gi|90855885|gb|AC184134.1| Zea mays chromosome UNK clone ZMMBBb-147G12; ZMMBBb0147G12, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces Length = 146949 Score = 36.2 bits (18), Expect = 6.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 611 ttattctttatgattttt 628 |||||||||||||||||| Sbjct: 50264 ttattctttatgattttt 50247 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 252,555 Number of Sequences: 836351 Number of extensions: 252555 Number of successful extensions: 19732 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19671 Number of HSP's gapped (non-prelim): 61 length of query: 789 length of database: 669,372,029 effective HSP length: 19 effective length of query: 770 effective length of database: 653,481,360 effective search space: 503180647200 effective search space used: 503180647200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)