BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= QAF1g01.yg.2.1 (335 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|24763681|gb|CA398852.1|CA398852 EL01N0311A12.g Endosperm_3 Ze... 446 e-124 gi|56691579|gb|CX129482.1|CX129482 QAO2f02.yg QAO Zea mays cDNA ... 438 e-121 gi|61236824|gb|DN586547.1|DN586547 EST6538 Zea mays embryo sac c... 438 e-121 gi|78118622|gb|DV537006.1|DV537006 ZM_BFb0229L22.r ZM_BFb Zea ma... 84 1e-14 gi|58082375|gb|AC155515.2| Zea mays strain B73 clone ZMMBBc0059O... 70 2e-10 gi|88687866|gb|AC182833.1| Zea mays chromosome UNK clone CH201-1... 48 7e-04 gi|31355839|gb|CD440196.1|CD440196 EL01N0551H11.b Endosperm_5 Ze... 44 0.011 gi|67011888|gb|CO440637.1|CO440637 MZCCL10026E12.g Maize Endospe... 40 0.17 gi|60354962|gb|DN221935.1|DN221935 MEST1121_E11.T7-1 UGA-ZmSAM-X... 38 0.67 gi|22603800|dbj|BD058194.1| Secreted expressed sequence tags (sE... 38 0.67 >gi|24763681|gb|CA398852.1|CA398852 EL01N0311A12.g Endosperm_3 Zea mays cDNA, mRNA sequence Length = 798 Score = 446 bits (225), Expect = e-124 Identities = 237/243 (97%) Strand = Plus / Minus Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 514 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 455 Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 395 Query: 121 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 335 Query: 181 ctcgagacgccttnnnaatgccacctcgggttatnnnaaatatccgatcaaaaacatcag 240 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 334 ctcgagacgccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcag 275 Query: 241 gat 243 ||| Sbjct: 274 gat 272 >gi|56691579|gb|CX129482.1|CX129482 QAO2f02.yg QAO Zea mays cDNA clone QAO2f02, mRNA sequence Length = 514 Score = 438 bits (221), Expect = e-121 Identities = 236/243 (97%) Strand = Plus / Plus Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2 acacatctcggctgagaacttgctcaccactgcctccagcaactttcccctcaaatagtg 61 Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 121 Query: 121 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 181 Query: 181 ctcgagacgccttnnnaatgccacctcgggttatnnnaaatatccgatcaaaaacatcag 240 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 182 ctcgagacgccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcag 241 Query: 241 gat 243 ||| Sbjct: 242 gat 244 >gi|61236824|gb|DN586547.1|DN586547 EST6538 Zea mays embryo sac cDNA library Zea mays cDNA clone ES14453 5' similar to beta 1,3 glucan synthase, mRNA sequence Length = 471 Score = 438 bits (221), Expect = e-121 Identities = 236/243 (97%) Strand = Plus / Minus Query: 1 acacatctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 acacatttcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtg 399 Query: 61 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 caatttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtga 339 Query: 121 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 tgttcccttggcgcaaagtcgaattgaacccggcatatatatcttcgcttatattaatca 279 Query: 181 ctcgagacgccttnnnaatgccacctcgggttatnnnaaatatccgatcaaaaacatcag 240 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 278 ctcgagacgccttgctaatgccacctcgggttatgtgaaatatccgatcaaaaacatcag 219 Query: 241 gat 243 ||| Sbjct: 218 gat 216 >gi|78118622|gb|DV537006.1|DV537006 ZM_BFb0229L22.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 835 Score = 83.8 bits (42), Expect = 1e-14 Identities = 129/158 (81%) Strand = Plus / Minus Query: 6 tctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatt 65 |||||||| |||||||| |||||||| || ||||||||||| || |||||||||||||| Sbjct: 235 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 176 Query: 66 tggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgtgatgttc 125 || || | |||||||| | ||||| || ||||| ||||||||||| || || ||| Sbjct: 175 tgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagttatgcat 116 Query: 126 ccttggcgcaaagtcgaattgaacccggcatatatatc 163 ||||| |||| ||| || ||||| || ||||||||||| Sbjct: 115 ccttgacgcagagttgagttgaatcctgcatatatatc 78 >gi|58082375|gb|AC155515.2| Zea mays strain B73 clone ZMMBBc0059O05, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces Length = 161304 Score = 69.9 bits (35), Expect = 2e-10 Identities = 53/59 (89%) Strand = Plus / Minus Query: 6 tctcggctgagaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaat 64 |||||||| |||||||| |||||||| || ||||||||||| || |||||||||||||| Sbjct: 28522 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaat 28464 >gi|88687866|gb|AC182833.1| Zea mays chromosome UNK clone CH201-175A10, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces Length = 174451 Score = 48.1 bits (24), Expect = 7e-04 Identities = 48/56 (85%) Strand = Plus / Minus Query: 63 atttggttcaagccaacatcacgccctttccccacctggatatattcatggtgtgt 118 |||||||||| ||||||||||| ||||| |||| ||| || |||||||| ||||| Sbjct: 126381 atttggttcattccaacatcacgtcctttgcccaactgtatgtattcatgatgtgt 126326 >gi|31355839|gb|CD440196.1|CD440196 EL01N0551H11.b Endosperm_5 Zea mays cDNA, mRNA sequence Length = 765 Score = 44.1 bits (22), Expect = 0.011 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 acacatctcggctgagaacttg 22 |||||||||||||||||||||| Sbjct: 32 acacatctcggctgagaacttg 11 >gi|67011888|gb|CO440637.1|CO440637 MZCCL10026E12.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 836 Score = 40.1 bits (20), Expect = 0.17 Identities = 32/36 (88%) Strand = Plus / Minus Query: 75 ccaacatcacgccctttccccacctggatatattca 110 ||||||||||||||||| || || || ||||||||| Sbjct: 84 ccaacatcacgccctttgccaacttgaatatattca 49 >gi|60354962|gb|DN221935.1|DN221935 MEST1121_E11.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 758 Score = 38.2 bits (19), Expect = 0.67 Identities = 19/19 (100%) Strand = Plus / Plus Query: 218 aaatatccgatcaaaaaca 236 ||||||||||||||||||| Sbjct: 718 aaatatccgatcaaaaaca 736 >gi|22603800|dbj|BD058194.1| Secreted expressed sequence tags (sESTs) Length = 520 Score = 38.2 bits (19), Expect = 0.67 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 aacttgctcaccattgcctccag 39 |||||||||| |||||||||||| Sbjct: 417 aacttgctcatcattgcctccag 395 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 66,424 Number of Sequences: 836351 Number of extensions: 66424 Number of successful extensions: 3737 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3721 Number of HSP's gapped (non-prelim): 16 length of query: 335 length of database: 669,372,029 effective HSP length: 19 effective length of query: 316 effective length of database: 653,481,360 effective search space: 206500109760 effective search space used: 206500109760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)