BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 8228901.3.1 (1173 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21621502|gb|BQ619508.1|BQ619508 RESEQ1A12_T7.ab1 Salt stresse... 680 0.0 gi|76016921|gb|DT944091.1|DT944091 ZM_BFb0130I06.r ZM_BFb Zea ma... 599 e-169 gi|13490924|gb|BG517688.1|BG517688 947070B02.y1 947 - 2 week sho... 218 1e-54 gi|71449632|gb|DR830682.1|DR830682 ZM_BFb0078P04.r ZM_BFb Zea ma... 44 0.040 gi|90659932|gb|AC183969.1| Zea mays chromosome UNK clone ZMMBBb-... 44 0.040 gi|16925079|gb|BM078147.1|BM078147 MEST115-F09.T3 ISUM4-TN Zea m... 40 0.62 gi|85861456|gb|AC177946.1| Zea mays chromosome UNK clone CH201-1... 40 0.62 gi|18661503|gb|BM501432.1|BM501432 PAC000000000598 Pioneer AF-1 ... 38 2.5 gi|42491926|gb|CK700972.1|CK700972 EST5074 Zea mays sperm cell c... 38 2.5 gi|78085369|gb|DV513762.1|DV513762 ZM_BFb0195C15.r ZM_BFb Zea ma... 38 2.5 gi|91873187|gb|EB403144.1|EB403144 ZM_BFb0310G10.r ZM_BFb Zea ma... 38 2.5 gi|85861442|gb|AC177932.1| Zea mays chromosome UNK clone CH201-1... 38 2.5 gi|89257789|gb|AC177913.2| Zea mays chromosome UNK clone CH201-1... 38 2.5 gi|58082231|gb|AC155368.2| Zea mays strain B73 clone ZMMBBb0100E... 38 2.5 gi|20208474|gb|BQ134563.1|BQ134563 1091015A09.x1 1091 - Immature... 36 9.7 gi|32827748|gb|CD967426.1|CD967426 SEV_429 GeneTag2 Zea mays cDN... 36 9.7 gi|61119327|gb|DN560288.1|DN560288 ME6-B08-T3-96-R1 E7PCR Zea ma... 36 9.7 gi|76928314|gb|DV171572.1|DV171572 ZM_BFb0172C06.r ZM_BFb Zea ma... 36 9.7 gi|78078785|gb|DV507197.1|DV507197 ZM_BFb0185E04.f ZM_BFb Zea ma... 36 9.7 gi|84970148|gb|DW468498.1|DW468498 ZM_BFb0172C06.f ZM_BFb Zea ma... 36 9.7 gi|92899621|gb|AC185413.1| Zea mays chromosome 2 clone ZMMBBb-52... 36 9.7 gi|88024461|gb|AC182603.1| Zea mays chromosome UNK clone CH201-4... 36 9.7 >gi|21621502|gb|BQ619508.1|BQ619508 RESEQ1A12_T7.ab1 Salt stressed Zea mays roots cDNA library Zea mays cDNA clone RESEQ1A12_T7.ab1 similar to NP_188833.1| (NM_113091) salicylic acid carboxyl methyltransferase, putative [Arabidopsis thaliana], mRNA sequence Length = 957 Score = 680 bits (343), Expect = 0.0 Identities = 398/424 (93%) Strand = Plus / Plus Query: 605 tgactttgtatgtttttctcagaaaatcatcatgcattacctgtcangctgctggatgtg 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 tgactttgtatgtttttctcagaaaatcatcatgcattacctgtcangctgctggatgtg 448 Query: 665 tccatgcttttgactttttgagtcttttaaaacaacgtatagttgtgtttttgtgtcacc 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 tccatgcttttgactttttgagtcttttaaaacaacgtatagttgtgtttttgtgtcacc 508 Query: 725 catttttgtgtttatatacatatataggcctcacaacaactgaaggacacccaaaataaa 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 catttttgtgtttatatacatatataggcctcacaacaactgaaggacacccaaaataaa 568 Query: 785 tgcctcgatatctacatcacaaaaaatatnnnnnnnnnnatggtggagatgtttcaccaa 844 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 569 tgcctcgatatctacatcacaaaaaatatccccccccccatggtggagatgtttcaccaa 628 Query: 845 cacttcgtaaaagagttttttcctccttcttaaaactaccttcaaagaaaatcttgtttg 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 cacttcgtaaaagagttttttcctccttcttaaaactaccttcaaagaaaatcttgtttg 688 Query: 905 gggggccaaagggtctaacaattattttaagaaacataagaatttgtttcttttaaagcc 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 gggggccaaagggtctaacaattattttaagaaacataagaatttgtttcttttaaagcc 748 Query: 965 gnnnnnnnttaccggttggttggnnnnnnnnntgtaaaaacccaaaaaggagggggctgg 1024 | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 749 gcccccccttaccggttggttggccccccccctgtaaaaacccaaaaaggagggggctgg 808 Query: 1025 gggg 1028 |||| Sbjct: 809 gggg 812 Score = 492 bits (248), Expect = e-137 Identities = 279/288 (96%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 289 ggtgattggcatcatag-ctcgccattgcaaagaacacgaccgacgacatgactacccac 347 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 ggtgattggcatcatatactcgccattgcaaagaacacgaccgacgacatgactacccac 133 Query: 348 aacttcagttcttcctgaatgacctgccgggaaacgacttcaacaatctcttcctactca 407 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 134 aacttcagttcttcctgaatgacctgccgggaaacgacttcaacaatctcttcctgctca 193 Query: 408 tccagcagttcaataagtcgattgcaagaaaccacaagggtgaggcagccgaggcactgc 467 |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 194 tccagcaggtcaataagtcgatggcaagaaaccacaagggtgaggcagctgaggcactgc 253 Query: 468 ctccgtgctatatctctggtttgccaggctccttctacactaggatcttccctagcgaaa 527 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 254 ctccgtgctatatctctggtttgtcaggctccttctacactaggatctttcctagcgaaa 313 Query: 528 gcgttcaccttttccactctttgttctccgttcactggcactctcagg 575 ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 gcgctcaccttttccactctttgttctccgttcactggcactctcagg 361 Score = 115 bits (58), Expect = 1e-23 Identities = 58/58 (100%) Strand = Plus / Plus Query: 1092 cgtttaacacacaatgtttgttaacacaaacaaccccaaccttttaaaaaattgggag 1149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 cgtttaacacacaatgtttgttaacacaaacaaccccaaccttttaaaaaattgggag 933 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1057 cggctccacacccccccca 1075 ||||||||||||||||||| Sbjct: 841 cggctccacacccccccca 859 Score = 38.2 bits (19), Expect = 2.5 Identities = 28/31 (90%) Strand = Plus / Plus Query: 573 aggcatcacaacaactaaaggacactcaaaa 603 |||| ||||||||||| |||||||| ||||| Sbjct: 534 aggcctcacaacaactgaaggacacccaaaa 564 >gi|76016921|gb|DT944091.1|DT944091 ZM_BFb0130I06.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 870 Score = 599 bits (302), Expect = e-169 Identities = 454/504 (90%), Gaps = 3/504 (0%) Strand = Plus / Plus Query: 77 atgacaatcgagcgtgatctccacatggccacagggaacggagaaactagctacacgaaa 136 |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 25 atgagaatagagcgtgatctccacatggccacaggggacggagaaactagctacacgaaa 84 Query: 137 aactctaggattcaggagaaagttatgtttcagatcaagccagtccttgaggaggccact 196 || ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 85 aattctaggattcaagagaaaactatgtttcagatcaagcctgtccttgaggaggccaca 144 Query: 197 agagcagcatactcagctctcctccctcaaaccatggtcgtggccgacttaggctgctca 256 ||||||| |||| ||||||||| ||||||||||||||| || || ||||||||||||||| Sbjct: 145 agagcagtatacacagctctccaccctcaaaccatggttgttgctgacttaggctgctca 204 Query: 257 tcggggcctaacacactgcgcttcatctccgaggtgattggcatcatagctcgccattgc 316 || |||||||||||| | |||||| | ||||||||||||||||||||||||||||||||| Sbjct: 205 tctgggcctaacacattacgcttcgtatccgaggtgattggcatcatagctcgccattgc 264 Query: 317 aaagaacacgaccgacgacatgactacccacaacttcagttcttcctgaatgacctgccg 376 |||||||| | ||||| ||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 265 aaagaacatggccgacaacatgaccacccacagcttcagttcttcctgaatgacctgccc 324 Query: 377 ggaaacgacttcaacaatctcttcctactcatccagcagttcaataagtcgattgcaaga 436 ||||||||||||||||||||||||| || |||||||||||||||||| || |||| | Sbjct: 325 ggaaacgacttcaacaatctcttccagctgatccagcagttcaataagctgacggcaata 384 Query: 437 aaccacaagggtgaggcagccgaggcactg---cctccgtgctatatctctggtttgcca 493 ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 385 aaccacaagagtgaggcagccgaggcactgcctcctccgtgctatatctctgggttgcct 444 Query: 494 ggctccttctacactaggatcttccctagcgaaagcgttcaccttttccactctttgttc 553 ||||||| ||| |||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct: 445 ggctcctactatactaggatcttccctagcgatagtgttcaccttttccattctttgttc 504 Query: 554 tccgttcactggcactctcaggca 577 | | |||| |||| |||| ||||| Sbjct: 505 tgccttcagtggcgctctgaggca 528 Score = 40.1 bits (20), Expect = 0.62 Identities = 23/24 (95%) Strand = Plus / Plus Query: 784 atgcctcgatatctacatcacaaa 807 |||||| ||||||||||||||||| Sbjct: 549 atgcctagatatctacatcacaaa 572 >gi|13490924|gb|BG517688.1|BG517688 947070B02.y1 947 - 2 week shoot from Barkan lab Zea mays cDNA, mRNA sequence Length = 118 Score = 218 bits (110), Expect = 1e-54 Identities = 116/118 (98%) Strand = Plus / Plus Query: 297 gcatcatagctcgccattgcaaagaacacgaccgacgacatgactacccacaacttcagt 356 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1 gcatcatagctcgccattgcaaagaacacgaccgaccacatgactacccacaacttcagt 60 Query: 357 tcttcctgaatgacctgccgggaaacgacttcaacaatctcttcctactcatccagca 414 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 61 tcttcctgaatgacctgccgggaaacgacttcaacaatctcttcctgctcatccagca 118 >gi|71449632|gb|DR830682.1|DR830682 ZM_BFb0078P04.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 728 Score = 44.1 bits (22), Expect = 0.040 Identities = 37/42 (88%) Strand = Plus / Plus Query: 350 cttcagttcttcctgaatgacctgccgggaaacgacttcaac 391 ||||||||| ||||||| ||||| || || |||||||||||| Sbjct: 351 cttcagttcgtcctgaacgacctccccggcaacgacttcaac 392 Score = 40.1 bits (20), Expect = 0.62 Identities = 62/76 (81%) Strand = Plus / Plus Query: 210 cagctctcctccctcaaaccatggtcgtggccgacttaggctgctcatcggggcctaaca 269 ||||||||||||| |||||||||||| |||||| | || ||||| | || || |||| Sbjct: 184 cagctctcctccccagaaccatggtcgtcgccgacctcggatgctctgcaggaccgaaca 243 Query: 270 cactgcgcttcatctc 285 | |||| ||||||||| Sbjct: 244 cgctgctcttcatctc 259 >gi|90659932|gb|AC183969.1| Zea mays chromosome UNK clone ZMMBBb-361I20; ZMMBBb0361I20, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces Length = 107329 Score = 44.1 bits (22), Expect = 0.040 Identities = 37/42 (88%) Strand = Plus / Minus Query: 350 cttcagttcttcctgaatgacctgccgggaaacgacttcaac 391 ||||||||| ||||||| ||||| || || |||||||||||| Sbjct: 87319 cttcagttcgtcctgaacgacctccccggcaacgacttcaac 87278 Score = 40.1 bits (20), Expect = 0.62 Identities = 62/76 (81%) Strand = Plus / Minus Query: 210 cagctctcctccctcaaaccatggtcgtggccgacttaggctgctcatcggggcctaaca 269 ||||||||||||| |||||||||||| |||||| | || ||||| | || || |||| Sbjct: 87486 cagctctcctccccagaaccatggtcgtcgccgacctcggatgctctgcaggaccgaaca 87427 Query: 270 cactgcgcttcatctc 285 | |||| ||||||||| Sbjct: 87426 cgctgctcttcatctc 87411 >gi|16925079|gb|BM078147.1|BM078147 MEST115-F09.T3 ISUM4-TN Zea mays cDNA clone MEST115-F09 3', mRNA sequence Length = 700 Score = 40.1 bits (20), Expect = 0.62 Identities = 23/24 (95%) Strand = Plus / Minus Query: 784 atgcctcgatatctacatcacaaa 807 |||||| ||||||||||||||||| Sbjct: 685 atgcctagatatctacatcacaaa 662 >gi|85861456|gb|AC177946.1| Zea mays chromosome UNK clone CH201-100M21; ZMMBBc0100M21, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces Length = 179387 Score = 40.1 bits (20), Expect = 0.62 Identities = 23/24 (95%) Strand = Plus / Plus Query: 727 tttttgtgtttatatacatatata 750 |||||||||||||||| ||||||| Sbjct: 172705 tttttgtgtttatatatatatata 172728 >gi|18661503|gb|BM501432.1|BM501432 PAC000000000598 Pioneer AF-1 array Zea mays cDNA, mRNA sequence Length = 397 Score = 38.2 bits (19), Expect = 2.5 Identities = 31/35 (88%) Strand = Plus / Plus Query: 353 cagttcttcctgaatgacctgccgggaaacgactt 387 |||||||||||||| ||||| || || |||||||| Sbjct: 319 cagttcttcctgaacgacctccccgggaacgactt 353 >gi|42491926|gb|CK700972.1|CK700972 EST5074 Zea mays sperm cell cDNA library Zea mays cDNA clone Zmsp12567 5', mRNA sequence Length = 419 Score = 38.2 bits (19), Expect = 2.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 215 ctcctccctcaaaccatggtcgtggcc 241 |||||| |||||||||||||| ||||| Sbjct: 1 ctcctctctcaaaccatggtcatggcc 27 >gi|78085369|gb|DV513762.1|DV513762 ZM_BFb0195C15.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 553 Score = 38.2 bits (19), Expect = 2.5 Identities = 31/35 (88%) Strand = Plus / Plus Query: 353 cagttcttcctgaatgacctgccgggaaacgactt 387 |||||||||||||| ||||| || || |||||||| Sbjct: 319 cagttcttcctgaacgacctccccgggaacgactt 353 >gi|91873187|gb|EB403144.1|EB403144 ZM_BFb0310G10.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 775 Score = 38.2 bits (19), Expect = 2.5 Identities = 31/35 (88%) Strand = Plus / Plus Query: 353 cagttcttcctgaatgacctgccgggaaacgactt 387 |||||||||||||| ||||| || || |||||||| Sbjct: 311 cagttcttcctgaacgacctccccgggaacgactt 345 >gi|85861442|gb|AC177932.1| Zea mays chromosome UNK clone CH201-117C7; ZMMBBc0117C07, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces Length = 207612 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gattgcaggttgcagccat 72 ||||||||||||||||||| Sbjct: 124339 gattgcaggttgcagccat 124321 >gi|89257789|gb|AC177913.2| Zea mays chromosome UNK clone CH201-143C12; ZMMBBc0143C12, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces Length = 236286 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 611 tgtatgtttttctcagaaa 629 ||||||||||||||||||| Sbjct: 93921 tgtatgtttttctcagaaa 93939 >gi|58082231|gb|AC155368.2| Zea mays strain B73 clone ZMMBBb0100E22, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces Length = 86894 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1125 ccccaaccttttaaaaaat 1143 ||||||||||||||||||| Sbjct: 20471 ccccaaccttttaaaaaat 20489 >gi|20208474|gb|BQ134563.1|BQ134563 1091015A09.x1 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence Length = 462 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 942 aagaatttgtttctttta 959 |||||||||||||||||| Sbjct: 112 aagaatttgtttctttta 95 >gi|32827748|gb|CD967426.1|CD967426 SEV_429 GeneTag2 Zea mays cDNA, mRNA sequence Length = 476 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 727 tttttgtgtttatatacatata 748 |||||||||||||||| ||||| Sbjct: 434 tttttgtgtttatatatatata 455 >gi|61119327|gb|DN560288.1|DN560288 ME6-B08-T3-96-R1 E7PCR Zea mays cDNA clone E7PCRME608B, mRNA sequence Length = 716 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 679 tttttgagtcttttaaaa 696 |||||||||||||||||| Sbjct: 155 tttttgagtcttttaaaa 172 >gi|76928314|gb|DV171572.1|DV171572 ZM_BFb0172C06.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 548 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1125 ccccaaccttttaaaaaa 1142 |||||||||||||||||| Sbjct: 363 ccccaaccttttaaaaaa 380 >gi|78078785|gb|DV507197.1|DV507197 ZM_BFb0185E04.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 585 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1125 ccccaaccttttaaaaaa 1142 |||||||||||||||||| Sbjct: 420 ccccaaccttttaaaaaa 437 >gi|84970148|gb|DW468498.1|DW468498 ZM_BFb0172C06.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 548 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1125 ccccaaccttttaaaaaa 1142 |||||||||||||||||| Sbjct: 363 ccccaaccttttaaaaaa 380 >gi|92899621|gb|AC185413.1| Zea mays chromosome 2 clone ZMMBBb-529A9; ZMMBBb0529A09, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces Length = 121148 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 421 taagtcgattgcaagaaa 438 |||||||||||||||||| Sbjct: 3347 taagtcgattgcaagaaa 3364 >gi|88024461|gb|AC182603.1| Zea mays chromosome UNK clone CH201-483H4, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces Length = 160334 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 847 cttcgtaaaagagttttt 864 |||||||||||||||||| Sbjct: 75746 cttcgtaaaagagttttt 75729 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 397,390 Number of Sequences: 836351 Number of extensions: 397390 Number of successful extensions: 29079 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28973 Number of HSP's gapped (non-prelim): 103 length of query: 1173 length of database: 669,372,029 effective HSP length: 20 effective length of query: 1153 effective length of database: 652,645,009 effective search space: 752499695377 effective search space used: 752499695377 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)