BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 5705822.3.1 (888 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|71318637|gb|DR796076.1|DR796076 ZM_BFb0017I15.r ZM_BFb Zea ma... 1183 0.0 gi|9732356|gb|BE511108.1|BE511108 946057H01.y1 946 - tassel prim... 1009 0.0 gi|60337090|gb|DN204063.1|DN204063 MEST956_C02.T7-1 UGA-ZmSAM-XZ... 942 0.0 gi|488130|dbj|D30744.1|MZEAMA1 Zea mays AMA1 mRNA for alpha-mann... 585 e-165 gi|488130|dbj|D30744.1|MZEAMA1 Zea mays AMA1 mRNA for alpha-mann... 585 e-165 gi|21216153|gb|AY111563.1| Zea mays CL1922_1 mRNA sequence 444 e-123 gi|21216153|gb|AY111563.1| Zea mays CL1922_1 mRNA sequence 444 e-123 gi|32805136|gb|CD957372.1|CD957372 SCI_156 GeneTag2 Zea mays cDN... 371 e-100 gi|67030835|gb|CO459584.1|CO459584 MZCCL20022B07.g Maize Endospe... 252 7e-65 gi|32801710|gb|CD953946.1|CD953946 SBM_114 GeneTag2 Zea mays cDN... 92 1e-16 gi|78075403|gb|DV503837.1|DV503837 ZM_BFb0180H03.f ZM_BFb Zea ma... 70 5e-10 gi|78075404|gb|DV503838.1|DV503838 ZM_BFb0180H03.r ZM_BFb Zea ma... 70 5e-10 gi|32859318|gb|CD998999.1|CD998999 QBF3b06.xg QBF Zea mays cDNA ... 66 8e-09 gi|28187708|gb|CB179318.1|CB179318 EST0405 Zea mays sperm cell c... 58 2e-06 gi|71430724|gb|DR811774.1|DR811774 ZM_BFb0040C13.r ZM_BFb Zea ma... 56 8e-06 gi|93014925|gb|EB640445.1|EB640445 ZM_BFb0329F09.r ZM_BFb Zea ma... 56 8e-06 gi|84908432|gb|DW404310.1|DW404310 E2782 Zea mays egg cell cDNA ... 50 5e-04 gi|32928984|gb|CF033796.1|CF033796 QCF20c09.yg QCF Zea mays cDNA... 48 0.002 gi|32929434|gb|CF034246.1|CF034246 QCF2h12.yg QCF Zea mays cDNA ... 48 0.002 gi|32929865|gb|CF034677.1|CF034677 QCF8c09.yg QCF Zea mays cDNA ... 48 0.002 gi|32929912|gb|CF034724.1|CF034724 QCF8h08.yg QCF Zea mays cDNA ... 48 0.002 gi|76015631|gb|DT942801.1|DT942801 ZM_BFb0128H01.f ZM_BFb Zea ma... 42 0.12 gi|76287716|gb|DV027284.1|DV027284 ZM_BFb0148K21.f ZM_BFb Zea ma... 42 0.12 gi|89247289|gb|DY619075.1|DY619075 ZM_BFb0275M09.f ZM_BFb Zea ma... 42 0.12 gi|1667388|emb|Y09238.1|ZMY09238 Z.mays gene encoding 3-hydroxy-... 42 0.12 gi|5055802|gb|AI734689.1|AI734689 606035A10.x1 606 - Ear tissue ... 38 1.9 gi|5268467|gb|AI770431.1|AI770431 606052E05.x2 606 - Ear tissue ... 38 1.9 gi|28987524|gb|CB351676.1|CB351676 3529_1_43_1_A12.y_1 3529 - 2 ... 38 1.9 gi|60340048|gb|DN207021.1|DN207021 MEST842_D08.T7-1 UGA-ZmSAM-XZ... 38 1.9 gi|60342706|gb|DN209679.1|DN209679 MEST874_B04.T7-1 UGA-ZmSAM-XZ... 38 1.9 gi|78125677|gb|DV544061.1|DV544061 ZM_BFb0240J09.r ZM_BFb Zea ma... 38 1.9 gi|18463956|gb|AF461813.1| Zea mays chromatin complex subunit A1... 38 1.9 gi|18463956|gb|AF461813.1| Zea mays chromatin complex subunit A1... 38 1.9 gi|18177958|gb|BM379168.1|BM379168 MEST500-F08.univ ISUM6 Zea ma... 36 7.3 gi|18963888|gb|BM660686.1|BM660686 952040H11.y1 952 - BMS tissue... 36 7.3 gi|18568260|gb|AF466646.1| Zea mays putative transposase (Z195D1... 36 7.3 gi|92901276|gb|AC185488.1| Zea mays chromosome 4 clone CH201-120... 36 7.3 gi|89257755|gb|AC177878.2| Zea mays chromosome UNK clone ZMMBBb-... 36 7.3 gi|89257716|gb|AC177834.2| Zea mays chromosome UNK clone CH201-4... 36 7.3 gi|73661235|gb|AC165179.2| Zea mays clone ZMMBBb-37E5, complete ... 36 7.3 >gi|71318637|gb|DR796076.1|DR796076 ZM_BFb0017I15.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 846 Score = 1183 bits (597), Expect = 0.0 Identities = 611/613 (99%), Gaps = 2/613 (0%) Strand = Plus / Plus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 295 Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 355 Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 415 Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 475 Query: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagacta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagacta 535 Query: 301 cacttggacacaagtacatcaaggaggagtttggccagatcccacggattggctggcaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 cacttggacacaagtacatcaaggaggagtttggccagatcccacggattggctggcaga 595 Query: 361 ttgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagtaggattcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 ttgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagtaggattcg 655 Query: 421 atgctttctatttcttccggattgattaccaagaccgtgatacacggaaaggaacaaaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 atgctttctatttcttccggattgattaccaagaccgtgatacacggaaaggaacaaaag 715 Query: 481 aactcgaggttgtatggaggggctccaagaccttgggctcatcggctgatatctttgctg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 aactcgaggttgtatggaggggctccaagaccttgggctcatcggctgatatctttgctg 775 Query: 541 gcatctttccaaaaaactatgaaccacctcctggtgatttttattttgaagttgatgata 600 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 776 gcatctttcc-aaaaactatgaa-cacctcctggtgatttttattttgaagttgatgata 833 Query: 601 attcccctgttgt 613 ||||||||||||| Sbjct: 834 attcccctgttgt 846 >gi|9732356|gb|BE511108.1|BE511108 946057H01.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence Length = 513 Score = 1009 bits (509), Expect = 0.0 Identities = 512/513 (99%) Strand = Plus / Plus Query: 53 ctccatccagggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaa 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctccatccagggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaa 60 Query: 113 ggacgagaaccgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaa 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggacgagaaccgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaa 120 Query: 173 ccagaatgacatgatcaaggatacagtgaaggggctcatcagctctggacggctggaatt 232 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 121 ccagaatgacatgatcaaggatacagtgaaggggctcatcggctctggacggctggaatt 180 Query: 233 aataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcga 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcga 240 Query: 293 tcagactacacttggacacaagtacatcaaggaggagtttggccagatcccacggattgg 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcagactacacttggacacaagtacatcaaggaggagtttggccagatcccacggattgg 300 Query: 353 ctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagt 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagt 360 Query: 413 aggattcgatgctttctatttcttccggattgattaccaagaccgtgatacacggaaagg 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggattcgatgctttctatttcttccggattgattaccaagaccgtgatacacggaaagg 420 Query: 473 aacaaaagaactcgaggttgtatggaggggctccaagaccttgggctcatcggctgatat 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aacaaaagaactcgaggttgtatggaggggctccaagaccttgggctcatcggctgatat 480 Query: 533 ctttgctggcatctttccaaaaaactatgaacc 565 ||||||||||||||||||||||||||||||||| Sbjct: 481 ctttgctggcatctttccaaaaaactatgaacc 513 >gi|60337090|gb|DN204063.1|DN204063 MEST956_C02.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 608 Score = 942 bits (475), Expect = 0.0 Identities = 482/483 (99%), Gaps = 1/483 (0%) Strand = Plus / Minus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 424 Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 364 Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 304 Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 244 Query: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagacta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagacta 184 Query: 301 cacttggacacaagtacatcaaggaggagtttggccagatcccacggattggctggcaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 cacttggacacaagtacatcaaggaggagtttggccagatcccacggattggctggcaga 124 Query: 361 ttgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagtaggattcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 ttgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagtaggattcg 64 Query: 421 atgctttctatttcttccggattgattaccaagaccg-tgatacacggaaaggaacaaaa 479 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 63 atgctttctatttcttccggattgattaccaagaccgatgatacacggaaaggaacaaaa 4 Query: 480 gaa 482 ||| Sbjct: 3 gaa 1 >gi|488130|dbj|D30744.1|MZEAMA1 Zea mays AMA1 mRNA for alpha-mannosidase, partial cds Length = 296 Score = 585 bits (295), Expect = e-165 Identities = 295/295 (100%) Strand = Plus / Plus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 Query: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295 >gi|488130|dbj|D30744.1|MZEAMA1 Zea mays AMA1 mRNA for alpha-mannosidase, partial cds Length = 296 Score = 585 bits (295), Expect = e-165 Identities = 295/295 (100%) Strand = Plus / Plus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 Query: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295 >gi|21216153|gb|AY111563.1| Zea mays CL1922_1 mRNA sequence Length = 561 Score = 444 bits (224), Expect = e-123 Identities = 237/243 (97%) Strand = Plus / Plus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 annnnncatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 181 acatgatcaaggatacagtgaaggggctcatcggctctggacggctggaattaataaatg 240 Query: 241 gtg 243 ||| Sbjct: 241 gtg 243 Score = 387 bits (195), Expect = e-105 Identities = 198/199 (99%) Strand = Plus / Plus Query: 262 aggcggctgtacactatattgacatgatcgatcagactacacttggacacaagtacatca 321 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 262 aggcggctgtacactatattgacatgatcgatcaaactacacttggacacaagtacatca 321 Query: 322 aggaggagtttggccagatcccacggattggctggcagattgatccgtttgggcactctg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 aggaggagtttggccagatcccacggattggctggcagattgatccgtttgggcactctg 381 Query: 382 cggttcaggcttaccttcttggcgcagaagtaggattcgatgctttctatttcttccgga 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 cggttcaggcttaccttcttggcgcagaagtaggattcgatgctttctatttcttccgga 441 Query: 442 ttgattaccaagaccgtga 460 ||||||||||||||||||| Sbjct: 442 ttgattaccaagaccgtga 460 Score = 135 bits (68), Expect = 1e-29 Identities = 68/68 (100%) Strand = Plus / Plus Query: 483 ctcgaggttgtatggaggggctccaagaccttgggctcatcggctgatatctttgctggc 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ctcgaggttgtatggaggggctccaagaccttgggctcatcggctgatatctttgctggc 542 Query: 543 atctttcc 550 |||||||| Sbjct: 543 atctttcc 550 >gi|21216153|gb|AY111563.1| Zea mays CL1922_1 mRNA sequence Length = 561 Score = 444 bits (224), Expect = e-123 Identities = 237/243 (97%) Strand = Plus / Plus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatccaacaactccatcc 60 Query: 61 agggggcatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 annnnncatgcgtgcagaacgtgctggattcgctcatcccggcgcttctcaaggacgaga 120 Query: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 accgaaagttcatctatgttgagcaggcattcttccaaagatggtggaggaaccagaatg 180 Query: 181 acatgatcaaggatacagtgaaggggctcatcagctctggacggctggaattaataaatg 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 181 acatgatcaaggatacagtgaaggggctcatcggctctggacggctggaattaataaatg 240 Query: 241 gtg 243 ||| Sbjct: 241 gtg 243 Score = 387 bits (195), Expect = e-105 Identities = 198/199 (99%) Strand = Plus / Plus Query: 262 aggcggctgtacactatattgacatgatcgatcagactacacttggacacaagtacatca 321 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 262 aggcggctgtacactatattgacatgatcgatcaaactacacttggacacaagtacatca 321 Query: 322 aggaggagtttggccagatcccacggattggctggcagattgatccgtttgggcactctg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 aggaggagtttggccagatcccacggattggctggcagattgatccgtttgggcactctg 381 Query: 382 cggttcaggcttaccttcttggcgcagaagtaggattcgatgctttctatttcttccgga 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 cggttcaggcttaccttcttggcgcagaagtaggattcgatgctttctatttcttccgga 441 Query: 442 ttgattaccaagaccgtga 460 ||||||||||||||||||| Sbjct: 442 ttgattaccaagaccgtga 460 Score = 135 bits (68), Expect = 1e-29 Identities = 68/68 (100%) Strand = Plus / Plus Query: 483 ctcgaggttgtatggaggggctccaagaccttgggctcatcggctgatatctttgctggc 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ctcgaggttgtatggaggggctccaagaccttgggctcatcggctgatatctttgctggc 542 Query: 543 atctttcc 550 |||||||| Sbjct: 543 atctttcc 550 >gi|32805136|gb|CD957372.1|CD957372 SCI_156 GeneTag2 Zea mays cDNA, mRNA sequence Length = 191 Score = 371 bits (187), Expect = e-100 Identities = 190/191 (99%) Strand = Plus / Plus Query: 43 gatccaacaactccatccagggggcatgcgtgcagaacgtgctggattcgctcatcccgg 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1 gatccaacaactccatccagggggcatgcgtgcagaacgtgctggattcgctcatcccag 60 Query: 103 cgcttctcaaggacgagaaccgaaagttcatctatgttgagcaggcattcttccaaagat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgcttctcaaggacgagaaccgaaagttcatctatgttgagcaggcattcttccaaagat 120 Query: 163 ggtggaggaaccagaatgacatgatcaaggatacagtgaaggggctcatcagctctggac 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggtggaggaaccagaatgacatgatcaaggatacagtgaaggggctcatcagctctggac 180 Query: 223 ggctggaatta 233 ||||||||||| Sbjct: 181 ggctggaatta 191 >gi|67030835|gb|CO459584.1|CO459584 MZCCL20022B07.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 856 Score = 252 bits (127), Expect = 7e-65 Identities = 145/151 (96%) Strand = Plus / Plus Query: 734 agacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcacta 793 |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1 agacttcaaatatccatacgcagagagttggttcagaaatatggacaaactaattcacta 60 Query: 794 tgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatgc 853 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 61 tgtgaacaaggatggccgtatcaatgctctttattccacaccttcgatttataccgatgc 120 Query: 854 aaaatatgctgcaaatgagcaggggcctctc 884 |||||||||||||||||||||| |||||||| Sbjct: 121 aaaatatgctgcaaatgagcagtggcctctc 151 >gi|32801710|gb|CD953946.1|CD953946 SBM_114 GeneTag2 Zea mays cDNA, mRNA sequence Length = 187 Score = 91.7 bits (46), Expect = 1e-16 Identities = 46/46 (100%) Strand = Plus / Plus Query: 1 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatc 46 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 acgacgtcggatggctcaagaccgtagaccagtactacgtcggatc 187 >gi|78075403|gb|DV503837.1|DV503837 ZM_BFb0180H03.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 711 Score = 69.9 bits (35), Expect = 5e-10 Identities = 44/47 (93%) Strand = Plus / Minus Query: 633 ttcgattataatgttgaagaacgagtaaatgattttgttgctgcagc 679 ||||| |||||||||||||||| ||| |||||||||||||||||||| Sbjct: 605 ttcgactataatgttgaagaacaagttaatgattttgttgctgcagc 559 >gi|78075404|gb|DV503838.1|DV503838 ZM_BFb0180H03.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 892 Score = 69.9 bits (35), Expect = 5e-10 Identities = 44/47 (93%) Strand = Plus / Plus Query: 633 ttcgattataatgttgaagaacgagtaaatgattttgttgctgcagc 679 ||||| |||||||||||||||| ||| |||||||||||||||||||| Sbjct: 726 ttcgactataatgttgaagaacaagttaatgattttgttgctgcagc 772 Score = 56.0 bits (28), Expect = 8e-06 Identities = 52/60 (86%) Strand = Plus / Plus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || ||||| || |||||||||||||| |||||||| || ||||| Sbjct: 373 gtgcatgcatgatgaagctgctgtccattatattgacatgattgatcagaccacgcttgg 432 >gi|32859318|gb|CD998999.1|CD998999 QBF3b06.xg QBF Zea mays cDNA clone QBF3b06, mRNA sequence Length = 540 Score = 65.9 bits (33), Expect = 8e-09 Identities = 36/37 (97%) Strand = Plus / Plus Query: 639 tataatgttgaagaacgagtaaatgattttgttgctg 675 |||||||||||||||||||| |||||||||||||||| Sbjct: 401 tataatgttgaagaacgagttaatgattttgttgctg 437 Score = 56.0 bits (28), Expect = 8e-06 Identities = 52/60 (86%) Strand = Plus / Plus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || ||||| || |||||||||||||| |||||||| || ||||| Sbjct: 65 gtgcatgcatgatgaagctgctgtccattatattgacatgattgatcagaccacgcttgg 124 >gi|28187708|gb|CB179318.1|CB179318 EST0405 Zea mays sperm cell cDNA library Zea mays cDNA clone Zmsp1374 5' similar to Putative alpha-mannosidase, mRNA sequence Length = 530 Score = 58.0 bits (29), Expect = 2e-06 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 639 tataatgttgaagaacgagtaaatga-ttttgttgctgcagctgtagcacaggcaaa 694 ||||||||||||||| |||| ||||| ||||||||||||||| ||| ||||||||| Sbjct: 260 tataatgttgaagaatgagttaatgatttttgttgctgcagccatagaacaggcaaa 316 >gi|71430724|gb|DR811774.1|DR811774 ZM_BFb0040C13.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 883 Score = 56.0 bits (28), Expect = 8e-06 Identities = 52/60 (86%) Strand = Plus / Plus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || ||||| || |||||||||||||| |||||||| || ||||| Sbjct: 516 gtgcatgcatgatgaagctgctgtccattatattgacatgattgatcagaccacgcttgg 575 >gi|93014925|gb|EB640445.1|EB640445 ZM_BFb0329F09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 797 Score = 56.0 bits (28), Expect = 8e-06 Identities = 52/60 (86%) Strand = Plus / Plus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || ||||| || |||||||||||||| |||||||| || ||||| Sbjct: 670 gtgcatgcatgatgaagctgctgtccattatattgacatgattgatcagaccacgcttgg 729 >gi|84908432|gb|DW404310.1|DW404310 E2782 Zea mays egg cell cDNA library Zea mays cDNA clone 4636 5' similar to alpha-mannosidase, mRNA sequence Length = 654 Score = 50.1 bits (25), Expect = 5e-04 Identities = 79/97 (81%) Strand = Plus / Plus Query: 761 ttggttcggaaatatggacaaactaattcactatgtgaacaaggatggccgtatccatgc 820 ||||||| | |||||||||||||| || | | ||||||||||||||||| | ||||| Sbjct: 13 ttggttccggaatatggacaaacttatctatcacgtgaacaaggatggccgagtgcatgc 72 Query: 821 tctttattccacaccttccatttataccgatgcaaaa 857 || ||||| || || |||||||| || ||||||||| Sbjct: 73 gctgtattctaccccatccatttacacagatgcaaaa 109 >gi|32928984|gb|CF033796.1|CF033796 QCF20c09.yg QCF Zea mays cDNA clone QCF20c09, mRNA sequence Length = 459 Score = 48.1 bits (24), Expect = 0.002 Identities = 51/60 (85%) Strand = Plus / Minus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || | ||| || |||||||||||||| |||||||| || ||||| Sbjct: 372 gtgcatgcatgatgaagctgttgtccattatattgacatgattgatcagaccacgcttgg 313 >gi|32929434|gb|CF034246.1|CF034246 QCF2h12.yg QCF Zea mays cDNA clone QCF2h12, mRNA sequence Length = 567 Score = 48.1 bits (24), Expect = 0.002 Identities = 51/60 (85%) Strand = Plus / Plus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || | ||| || |||||||||||||| |||||||| || ||||| Sbjct: 413 gtgcatgcatgatgaagctgttgtccattatattgacatgattgatcagaccacgcttgg 472 >gi|32929865|gb|CF034677.1|CF034677 QCF8c09.yg QCF Zea mays cDNA clone QCF8c09, mRNA sequence Length = 542 Score = 48.1 bits (24), Expect = 0.002 Identities = 51/60 (85%) Strand = Plus / Plus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || | ||| || |||||||||||||| |||||||| || ||||| Sbjct: 413 gtgcatgcatgatgaagctgttgtccattatattgacatgattgatcagaccacgcttgg 472 >gi|32929912|gb|CF034724.1|CF034724 QCF8h08.yg QCF Zea mays cDNA clone QCF8h08, mRNA sequence Length = 541 Score = 48.1 bits (24), Expect = 0.002 Identities = 51/60 (85%) Strand = Plus / Minus Query: 248 gtgcatgcacgatgaggcggctgtacactatattgacatgatcgatcagactacacttgg 307 ||||||||| ||||| || | ||| || |||||||||||||| |||||||| || ||||| Sbjct: 372 gtgcatgcatgatgaagctgttgtccattatattgacatgattgatcagaccacgcttgg 313 >gi|76015631|gb|DT942801.1|DT942801 ZM_BFb0128H01.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 744 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 gcgtgcagaacgtgctggatt 90 ||||||||||||||||||||| Sbjct: 198 gcgtgcagaacgtgctggatt 178 >gi|76287716|gb|DV027284.1|DV027284 ZM_BFb0148K21.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 725 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 gcgtgcagaacgtgctggatt 90 ||||||||||||||||||||| Sbjct: 198 gcgtgcagaacgtgctggatt 178 >gi|89247289|gb|DY619075.1|DY619075 ZM_BFb0275M09.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 617 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 gcgtgcagaacgtgctggatt 90 ||||||||||||||||||||| Sbjct: 198 gcgtgcagaacgtgctggatt 178 >gi|1667388|emb|Y09238.1|ZMY09238 Z.mays gene encoding 3-hydroxy-3-methylglutaryl-CoA reductase Length = 3671 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 gcgtgcagaacgtgctggatt 90 ||||||||||||||||||||| Sbjct: 1282 gcgtgcagaacgtgctggatt 1302 >gi|5055802|gb|AI734689.1|AI734689 606035A10.x1 606 - Ear tissue cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence Length = 584 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 568 ggcgcttctcaaggacgag 550 >gi|5268467|gb|AI770431.1|AI770431 606052E05.x2 606 - Ear tissue cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence Length = 591 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 571 ggcgcttctcaaggacgag 589 >gi|28987524|gb|CB351676.1|CB351676 3529_1_43_1_A12.y_1 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence Length = 634 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 532 ggcgcttctcaaggacgag 550 >gi|60340048|gb|DN207021.1|DN207021 MEST842_D08.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 600 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 368 ggcgcttctcaaggacgag 386 >gi|60342706|gb|DN209679.1|DN209679 MEST874_B04.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 600 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 368 ggcgcttctcaaggacgag 386 >gi|78125677|gb|DV544061.1|DV544061 ZM_BFb0240J09.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 692 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 548 ggcgcttctcaaggacgag 566 >gi|18463956|gb|AF461813.1| Zea mays chromatin complex subunit A101 (cha101) mRNA, complete cds Length = 2643 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 2158 ggcgcttctcaaggacgag 2176 >gi|18463956|gb|AF461813.1| Zea mays chromatin complex subunit A101 (cha101) mRNA, complete cds Length = 2643 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggcgcttctcaaggacgag 119 ||||||||||||||||||| Sbjct: 2158 ggcgcttctcaaggacgag 2176 >gi|18177958|gb|BM379168.1|BM379168 MEST500-F08.univ ISUM6 Zea mays cDNA clone MEST500-F08 3', mRNA sequence Length = 458 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 855 aaatatgctgcaaatgag 872 |||||||||||||||||| Sbjct: 348 aaatatgctgcaaatgag 331 >gi|18963888|gb|BM660686.1|BM660686 952040H11.y1 952 - BMS tissue from Walbot Lab (reduced rRNA) Zea mays cDNA, mRNA sequence Length = 118 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 603 tcccctgttgtccaggat 620 |||||||||||||||||| Sbjct: 84 tcccctgttgtccaggat 67 >gi|18568260|gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds Length = 141939 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 664 attttgttgctgcagctg 681 |||||||||||||||||| Sbjct: 82897 attttgttgctgcagctg 82880 >gi|92901276|gb|AC185488.1| Zea mays chromosome 4 clone CH201-120B14; ZMMBBc0120B14, *** SEQUENCING IN PROGRESS ***, 24 unordered pieces Length = 196265 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 344 acggattggctggcagat 361 |||||||||||||||||| Sbjct: 100276 acggattggctggcagat 100293 >gi|89257755|gb|AC177878.2| Zea mays chromosome UNK clone ZMMBBb-355I18; ZMMBBb0355I18, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces Length = 165238 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 575 tgatttttattttgaagt 592 |||||||||||||||||| Sbjct: 124851 tgatttttattttgaagt 124834 >gi|89257716|gb|AC177834.2| Zea mays chromosome UNK clone CH201-43M11; ZMMBBc0043M11, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces Length = 200864 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 308 acacaagtacatcaagga 325 |||||||||||||||||| Sbjct: 182512 acacaagtacatcaagga 182529 >gi|73661235|gb|AC165179.2| Zea mays clone ZMMBBb-37E5, complete sequence Length = 134893 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 655 gagtaaatgattttgttg 672 |||||||||||||||||| Sbjct: 118960 gagtaaatgattttgttg 118977 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 326,589 Number of Sequences: 836351 Number of extensions: 326589 Number of successful extensions: 25939 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25853 Number of HSP's gapped (non-prelim): 79 length of query: 888 length of database: 669,372,029 effective HSP length: 19 effective length of query: 869 effective length of database: 653,481,360 effective search space: 567875301840 effective search space used: 567875301840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)