BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 3866402.2.1 (406 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|7009359|gb|AW455624.1|AW455624 707083D05.x1 707 - Mixed adult... 793 0.0 gi|78180045|gb|DV550418.1|DV550418 1000066-B05.GAD10-F UGI-Reseq... 759 0.0 gi|67014683|gb|CO443432.1|CO443432 MZCCL10057B07.g Maize Endospe... 551 e-155 gi|78103451|gb|DV521879.1|DV521879 ZM_BFb0207G04.f ZM_BFb Zea ma... 375 e-102 gi|12046572|gb|BF728711.1|BF728711 1000066B05.x1 1000 - Unigene ... 305 2e-81 gi|37393718|gb|CF634124.1|CF634124 zmrww00_0A10-008-f01.s4 zmrww... 40 0.21 gi|40336633|gb|CK370703.1|CK370703 zmrww005_0A10-008-f01.s0 zmrw... 40 0.21 gi|67020105|gb|CO448854.1|CO448854 MZCCL10130B07.g Maize Endospe... 40 0.21 gi|71419623|gb|DR804839.1|DR804839 ZM_BFb0030B11.f ZM_BFb Zea ma... 40 0.21 gi|71419624|gb|DR804840.1|DR804840 ZM_BFb0030B11.r ZM_BFb Zea ma... 40 0.21 gi|91982820|gb|AC185276.1| Zea mays chromosome UNK clone CH201-3... 40 0.21 gi|4572834|gb|AI586483.1|AI586483 486051G06.x2 486 - leaf primor... 38 0.82 gi|12971941|gb|BG267734.1|BG267734 1000137B06.x2 1000 - Unigene ... 38 0.82 gi|67014266|gb|CO443015.1|CO443015 MZCCL10058G03.g Maize Endospe... 38 0.82 gi|67014856|gb|CO443605.1|CO443605 MZCCL10047D09.g Maize Endospe... 38 0.82 gi|67019808|gb|CO448557.1|CO448557 MZCCL10122B12.g Maize Endospe... 38 0.82 gi|83279419|gb|DV943427.1|DV943427 1000137-B06.T7-1 UGI-Reseq Ze... 38 0.82 gi|91050139|gb|EB160557.1|EB160557 ZM_BFb0298I11.r ZM_BFb Zea ma... 38 0.82 gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence 38 0.82 gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence 38 0.82 gi|58082325|gb|AC155464.2| Zea mays strain B73 clone ZMMBBb0518C... 38 0.82 gi|45664645|gb|BV125122.1| PZA00721 Zea mays ssp. parviglumis Ka... 36 3.3 gi|91064990|gb|AC184766.1| Zea mays chromosome UNK clone ZMMBBb-... 36 3.3 gi|88687858|gb|AC182825.1| Zea mays chromosome UNK clone CH201-1... 36 3.3 >gi|7009359|gb|AW455624.1|AW455624 707083D05.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence Length = 406 Score = 793 bits (400), Expect = 0.0 Identities = 405/406 (99%) Strand = Plus / Plus Query: 1 aagaaaaaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaatt 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aagaaaaaccagccttgngtatacagccaagactctgaaagcatcagcagccttacaatt 60 Query: 61 cctccaacaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgccta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cctccaacaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgccta 120 Query: 121 acccgtgtgtacgaatgtttcctgaattaacattatctttgcttcttgccgccagccaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 acccgtgtgtacgaatgtttcctgaattaacattatctttgcttcttgccgccagccaag 180 Query: 181 atccgagagatttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccgagagatttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaac 240 Query: 241 tccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaatccccatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaatccccatc 300 Query: 301 aggtactcataccccctagagagggccttcacggatccccagagcccaaacgccttgatg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aggtactcataccccctagagagggccttcacggatccccagagcccaaacgccttgatg 360 Query: 361 accggtttacttgcttgagatatctgcagaatggcccatcctgtgg 406 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 accggtttacttgcttgagatatctgcagaatggcccatcctgtgg 406 >gi|78180045|gb|DV550418.1|DV550418 1000066-B05.GAD10-F UGI-Reseq Zea mays cDNA, mRNA sequence Length = 440 Score = 759 bits (383), Expect = 0.0 Identities = 400/406 (98%) Strand = Plus / Plus Query: 1 aagaaaaaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25 aagaaaaaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaatt 84 Query: 61 cctccaacaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgccta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 cctccaacaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgccta 144 Query: 121 acccgtgtgtacgaatgtttcctgaattaacattatctttgcttcttgccgccagccaag 180 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 acccgtgtgtaccaatgtttcctgaattaacattatctttgcttcttgccgccagccaaa 204 Query: 181 atccgagagatttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 205 atccgagagatttgaaggcctcggctaaatgcctgattaaaaagcaatctcgtctggaac 264 Query: 241 tccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaatccccatc 300 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 265 tccgagacaaatgggaaccatgccagcacagccaccgggacaaagatgacaatccccatc 324 Query: 301 aggtactcataccccctagagagggccttcacggatccccagagcccaaacgccttgatg 360 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 aggtactcataccccctatagagggccttcacggatccccagagcccaaacgccttgatg 384 Query: 361 accggtttacttgcttgagatatctgcagaatggcccatcctgtgg 406 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 accggtttacttgcttgagatatctgcagaatggcccatcctgtgg 430 >gi|67014683|gb|CO443432.1|CO443432 MZCCL10057B07.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 867 Score = 551 bits (278), Expect = e-155 Identities = 320/333 (96%), Gaps = 2/333 (0%) Strand = Plus / Minus Query: 74 cccatgacccatgtacaacaatcatcctggagctaatcccttgcctaacccgtgtgtacg 133 |||||||||||||| ||||||||||| || ||||||| ||||||||||||| ||||| Sbjct: 853 cccatgacccatgt-caacaatcatctgnnagntaatcccntgcctaacccgtg-gtacg 796 Query: 134 aatgtttcctgaattaacattatctttgcttcttgccgccagccaagatccgagagattt 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 795 aatgtttcctgaattaacattatctttgcttcttgccgccagccaagatccgagagattt 736 Query: 194 gaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaactccgagacaaatg 253 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 735 gaaggctcgggctaaatgcctgattaaaaagcaatctcgtctggaactccgagacaaatg 676 Query: 254 ggaaccatgccagcacagccaccggnacgaagatgacaatccccatcaggtactcatacc 313 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 675 ggaaccatgccagcacagccaccgggacgaagatgacaatccccatcaggtactcatacc 616 Query: 314 ccctagagagggccttcacggatccccagagcccaaacgccttgatgaccggtttacttg 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 ccctagagagggccttcacggatccccagagcccaaacgccttgatgaccggtttacttg 556 Query: 374 cttgagatatctgcagaatggcccatcctgtgg 406 ||||||||||||||||||||||||||||||||| Sbjct: 555 cttgagatatctgcagaatggcccatcctgtgg 523 >gi|78103451|gb|DV521879.1|DV521879 ZM_BFb0207G04.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 630 Score = 375 bits (189), Expect = e-102 Identities = 347/400 (86%) Strand = Plus / Plus Query: 4 aaaaaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaattcct 63 ||||||| |||||| | |||||||||| | ||||||||||||||||||||||||||||| Sbjct: 84 aaaaacccgccttggggatacagccaaaaatctgaaagcatcagcagccttacaattccc 143 Query: 64 ccaacaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgcctaacc 123 ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||| Sbjct: 144 ccaacaaacacccctgacccatggacaacaatcctcctggagctaatcccttgcccaacc 203 Query: 124 cgtgtgtacgaatgtttcctgaattaacattatctttgcttcttgccgccagccaagatc 183 || | | ||||||| |||| ||||||||||||||||||||||||||| || ||||| | | Sbjct: 204 cggggggacgaatggttcccgaattaacattatctttgcttcttgccccccgccaaaaac 263 Query: 184 cgagagatttgaaggcctcggctaaatgcctgattaaaaagcaatctcgcctggaactcc 243 ||| | ||||||||||| ||||||||||||||| |||||| ||||| || ||||||| || Sbjct: 264 cgaaaaatttgaaggccccggctaaatgcctgaataaaaaacaatcccgtctggaacccc 323 Query: 244 gagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaatccccatcagg 303 | ||||||||||||| |||| || ||||| |||| || || | |||||||||| ||||| Sbjct: 324 caaacaaatgggaaccctgcccgcccagcccccgggacaaaaaagacaatccccctcagg 383 Query: 304 tactcataccccctagagagggccttcacggatccccagagcccaaacgccttgatgacc 363 || | ||||||| | ||||||||||| ||||||||| | ||||||||||||| ||||| Sbjct: 384 gacccctaccccccaaagagggccttcccggatcccccaaacccaaacgccttggtgacc 443 Query: 364 ggtttacttgcttgagatatctgcagaatggcccatcctg 403 ||||||||||||||| | ||||||| || ||||| ||||| Sbjct: 444 ggtttacttgcttgaaaaatctgcaaaaaggcccctcctg 483 >gi|12046572|gb|BF728711.1|BF728711 1000066B05.x1 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 154 Score = 305 bits (154), Expect = 2e-81 Identities = 154/154 (100%) Strand = Plus / Plus Query: 7 aaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaattcctcca 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aaccagccttgtgtatacagccaagactctgaaagcatcagcagccttacaattcctcca 60 Query: 67 acaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgcctaacccgt 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acaaacacccatgacccatgtacaacaatcatcctggagctaatcccttgcctaacccgt 120 Query: 127 gtgtacgaatgtttcctgaattaacattatcttt 160 |||||||||||||||||||||||||||||||||| Sbjct: 121 gtgtacgaatgtttcctgaattaacattatcttt 154 >gi|37393718|gb|CF634124.1|CF634124 zmrww00_0A10-008-f01.s4 zmrww00 Zea mays cDNA 3', mRNA sequence Length = 831 Score = 40.1 bits (20), Expect = 0.21 Identities = 35/40 (87%) Strand = Plus / Plus Query: 187 gagatttgaaggcctcggctaaatgcctgattaaaaagca 226 ||||| || ||||| |||||||||||||| ||||| |||| Sbjct: 250 gagatctggaggccccggctaaatgcctggttaaacagca 289 >gi|40336633|gb|CK370703.1|CK370703 zmrww005_0A10-008-f01.s0 zmrww005 Zea mays cDNA 5', mRNA sequence Length = 890 Score = 40.1 bits (20), Expect = 0.21 Identities = 35/40 (87%) Strand = Plus / Minus Query: 187 gagatttgaaggcctcggctaaatgcctgattaaaaagca 226 ||||| || ||||| |||||||||||||| ||||| |||| Sbjct: 621 gagatctggaggccccggctaaatgcctggttaaacagca 582 >gi|67020105|gb|CO448854.1|CO448854 MZCCL10130B07.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 803 Score = 40.1 bits (20), Expect = 0.21 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctgaaagcatcagcagcctt 54 |||||||||||||||||||| Sbjct: 239 ctgaaagcatcagcagcctt 220 >gi|71419623|gb|DR804839.1|DR804839 ZM_BFb0030B11.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 804 Score = 40.1 bits (20), Expect = 0.21 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ctgaaagcatcagcagcctt 54 |||||||||||||||||||| Sbjct: 624 ctgaaagcatcagcagcctt 643 >gi|71419624|gb|DR804840.1|DR804840 ZM_BFb0030B11.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 846 Score = 40.1 bits (20), Expect = 0.21 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ctgaaagcatcagcagcctt 54 |||||||||||||||||||| Sbjct: 407 ctgaaagcatcagcagcctt 388 >gi|91982820|gb|AC185276.1| Zea mays chromosome UNK clone CH201-322M15; ZMMBBc0322M15, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces Length = 163620 Score = 40.1 bits (20), Expect = 0.21 Identities = 35/40 (87%) Strand = Plus / Minus Query: 187 gagatttgaaggcctcggctaaatgcctgattaaaaagca 226 ||||| || ||||| |||||||||||||| ||||| |||| Sbjct: 20641 gagatctggaggccccggctaaatgcctggttaaacagca 20602 >gi|4572834|gb|AI586483.1|AI586483 486051G06.x2 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 412 Score = 38.2 bits (19), Expect = 0.82 Identities = 25/27 (92%) Strand = Plus / Plus Query: 234 ctggaactccgagacaaatgggaacca 260 |||||||||||| ||||| |||||||| Sbjct: 211 ctggaactccgaaacaaacgggaacca 237 >gi|12971941|gb|BG267734.1|BG267734 1000137B06.x2 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 261 Score = 38.2 bits (19), Expect = 0.82 Identities = 25/27 (92%) Strand = Plus / Plus Query: 234 ctggaactccgagacaaatgggaacca 260 |||||||||||| ||||| |||||||| Sbjct: 142 ctggaactccgaaacaaacgggaacca 168 >gi|67014266|gb|CO443015.1|CO443015 MZCCL10058G03.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 858 Score = 38.2 bits (19), Expect = 0.82 Identities = 28/31 (90%) Strand = Plus / Minus Query: 235 tggaactccgagacaaatgggaaccatgcca 265 |||||||| || ||||| ||||||||||||| Sbjct: 504 tggaactcggacacaaaggggaaccatgcca 474 >gi|67014856|gb|CO443605.1|CO443605 MZCCL10047D09.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 667 Score = 38.2 bits (19), Expect = 0.82 Identities = 28/31 (90%) Strand = Plus / Minus Query: 235 tggaactccgagacaaatgggaaccatgcca 265 |||||||| || ||||| ||||||||||||| Sbjct: 441 tggaactcggacacaaaggggaaccatgcca 411 >gi|67019808|gb|CO448557.1|CO448557 MZCCL10122B12.g Maize Endosperm cDNA Library Zea mays cDNA, mRNA sequence Length = 487 Score = 38.2 bits (19), Expect = 0.82 Identities = 28/31 (90%) Strand = Plus / Minus Query: 235 tggaactccgagacaaatgggaaccatgcca 265 |||||||| || ||||| ||||||||||||| Sbjct: 160 tggaactcggacacaaaggggaaccatgcca 130 >gi|83279419|gb|DV943427.1|DV943427 1000137-B06.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence Length = 456 Score = 38.2 bits (19), Expect = 0.82 Identities = 25/27 (92%) Strand = Plus / Plus Query: 234 ctggaactccgagacaaatgggaacca 260 |||||||||||| ||||| |||||||| Sbjct: 138 ctggaactccgaaacaaacgggaacca 164 >gi|91050139|gb|EB160557.1|EB160557 ZM_BFb0298I11.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 811 Score = 38.2 bits (19), Expect = 0.82 Identities = 28/31 (90%) Strand = Plus / Minus Query: 235 tggaactccgagacaaatgggaaccatgcca 265 |||||||| || ||||| ||||||||||||| Sbjct: 613 tggaactcggacacaaaggggaaccatgcca 583 >gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence Length = 2352 Score = 38.2 bits (19), Expect = 0.82 Identities = 25/27 (92%) Strand = Plus / Minus Query: 234 ctggaactccgagacaaatgggaacca 260 |||||||||||| ||||| |||||||| Sbjct: 2014 ctggaactccgaaacaaacgggaacca 1988 >gi|21210805|gb|AY107727.1| Zea mays PCO075555 mRNA sequence Length = 2352 Score = 38.2 bits (19), Expect = 0.82 Identities = 25/27 (92%) Strand = Plus / Minus Query: 234 ctggaactccgagacaaatgggaacca 260 |||||||||||| ||||| |||||||| Sbjct: 2014 ctggaactccgaaacaaacgggaacca 1988 >gi|58082325|gb|AC155464.2| Zea mays strain B73 clone ZMMBBb0518C23, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces Length = 119773 Score = 38.2 bits (19), Expect = 0.82 Identities = 28/31 (90%) Strand = Plus / Minus Query: 235 tggaactccgagacaaatgggaaccatgcca 265 |||||||| || ||||| ||||||||||||| Sbjct: 81630 tggaactcggacacaaaggggaaccatgcca 81600 >gi|45664645|gb|BV125122.1| PZA00721 Zea mays ssp. parviglumis Kato Site 4 Zea mays Kato Site 4 Zea mays subsp. parviglumis STS genomic, sequence tagged site Length = 357 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 344 gcccaaacgccttgatga 361 |||||||||||||||||| Sbjct: 11 gcccaaacgccttgatga 28 >gi|91064990|gb|AC184766.1| Zea mays chromosome UNK clone ZMMBBb-578E22; ZMMBBb0578E22, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces Length = 153578 Score = 36.2 bits (18), Expect = 3.3 Identities = 21/22 (95%) Strand = Plus / Plus Query: 159 ttgcttcttgccgccagccaag 180 ||||||||||||||| |||||| Sbjct: 32161 ttgcttcttgccgcccgccaag 32182 >gi|88687858|gb|AC182825.1| Zea mays chromosome UNK clone CH201-189P15, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces Length = 138993 Score = 36.2 bits (18), Expect = 3.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 tgtatacagccaagactc 35 |||||||||||||||||| Sbjct: 93160 tgtatacagccaagactc 93177 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 124,372 Number of Sequences: 836351 Number of extensions: 124372 Number of successful extensions: 8069 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8025 Number of HSP's gapped (non-prelim): 42 length of query: 406 length of database: 669,372,029 effective HSP length: 19 effective length of query: 387 effective length of database: 653,481,360 effective search space: 252897286320 effective search space used: 252897286320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)