BLASTN 2.2.6 [Apr-09-2003] BLASTN 2.2.6 [Apr-09-2003] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 2440444.2.1 (237 letters) Database: mais_NCBI.fasta 836,351 sequences; 669,372,029 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4646565|gb|AI491304.2|AI491304 486021D11.x3 486 - leaf primor... 470 e-131 gi|83278278|gb|DV942286.1|DV942286 1000132-F07.T7-1 UGI-Reseq Ze... 462 e-129 gi|4646624|gb|AI491450.2|AI491450 486023A10.x1 486 - leaf primor... 44 0.008 gi|4681231|gb|AI629901.1|AI629901 486041G10.x2 486 - leaf primor... 44 0.008 gi|12971606|gb|BG267566.1|BG267566 1000133D04.x2 1000 - Unigene ... 44 0.008 gi|18181325|gb|BM382535.1|BM382535 MEST551-A12.univ ISUM6 Zea ma... 44 0.008 gi|37373816|gb|CF623230.1|CF623230 zmrws05_0A10-005-e02.s3 zmrws... 44 0.008 gi|44900980|gb|CK827525.1|CK827525 zmrsub1_0B20-007-h04.s2 zmrsu... 44 0.008 gi|50330858|gb|CO525984.1|CO525984 3530_1_172_1_H07.x_1 3530 - F... 44 0.008 gi|60340154|gb|DN207127.1|DN207127 MEST844_A06.T7-1 UGA-ZmSAM-XZ... 44 0.008 gi|60349583|gb|DN216556.1|DN216556 MEST1037_F08.T7-1 UGA-ZmSAM-X... 44 0.008 gi|71433805|gb|DR814855.1|DR814855 ZM_BFb0044L11.f ZM_BFb Zea ma... 44 0.008 gi|84969567|gb|DT651866.2|DT651866 ZM_BFb0116F03.f ZM_BFb Zea ma... 44 0.008 gi|74233999|gb|DT641913.1|DT641913 ZM_BFb0100D06.f ZM_BFb Zea ma... 44 0.008 gi|76017303|gb|DT944473.1|DT944473 ZM_BFb0131E08.f ZM_BFb Zea ma... 44 0.008 gi|76290564|gb|DV030132.1|DV030132 ZM_BFb0152N10.f ZM_BFb Zea ma... 44 0.008 gi|83278496|gb|DV942504.1|DV942504 1000133-D04.T7-1 UGI-Reseq Ze... 44 0.008 gi|88752861|gb|DY537002.1|DY537002 ZM_BFb0270P18.f ZM_BFb Zea ma... 44 0.008 gi|21208812|gb|AY105734.1| Zea mays PCO075201 mRNA sequence 44 0.008 gi|21208812|gb|AY105734.1| Zea mays PCO075201 mRNA sequence 44 0.008 gi|88747485|gb|DY531626.1|DY531626 ZM_BFb0250I18.f ZM_BFb Zea ma... 36 1.8 gi|91630497|gb|AC185110.1| Zea mays chromosome UNK clone CH201-5... 36 1.8 gi|90992694|gb|AC184697.1| Zea mays chromosome UNK clone ZMMBBb-... 36 1.8 gi|92087079|gb|AC157320.2| Zea mays clone ZMMBBb-7C14, complete ... 36 1.8 gi|76936760|gb|DV174869.1|DV174869 ZM_BFb0179B04.r ZM_BFb Zea ma... 34 7.3 gi|92899634|gb|AC185416.1| Zea mays chromosome UNK clone CH201-5... 34 7.3 >gi|4646565|gb|AI491304.2|AI491304 486021D11.x3 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 237 Score = 470 bits (237), Expect = e-131 Identities = 237/237 (100%) Strand = Plus / Plus Query: 1 gctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcga 60 Query: 61 tcaccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tcaccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacc 120 Query: 121 tgagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttg 180 Query: 181 ccgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ccgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237 >gi|83278278|gb|DV942286.1|DV942286 1000132-F07.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence Length = 724 Score = 462 bits (233), Expect = e-129 Identities = 236/237 (99%) Strand = Plus / Plus Query: 1 gctcaaacctaatctccatctcatggttgtcaaccatgaagaaatgagacccaatatcga 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 73 gctcaaacctaatctccatctcatggttgtcaaccatgaggaaatgagacccaatatcga 132 Query: 61 tcaccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 tcaccttcctgccatccgccctcaccctggagaaatgcttacacgggctgatgtcaaacc 192 Query: 121 tgagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tgagcttagccgtctcccctgccttgagatgctggctcctgaacccaatcagctggcttg 252 Query: 181 ccgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 ccgggcgaccttgtttcgtgtttggccagcggaggaacatgagcaccgagtgcttcc 309 >gi|4646624|gb|AI491450.2|AI491450 486023A10.x1 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 521 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 58 atcgatcaccttcctgccatcc 79 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 212 ggccagcgcatgaacaccagcaccgagtgcttcc 245 >gi|4681231|gb|AI629901.1|AI629901 486041G10.x2 486 - leaf primordia cDNA library from Hake lab Zea mays cDNA, mRNA sequence Length = 462 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 79 atcgatcaccttcctgccatcc 100 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 233 ggccagcgcatgaacaccagcaccgagtgcttcc 266 >gi|12971606|gb|BG267566.1|BG267566 1000133D04.x2 1000 - Unigene I from Maize Genome Project Zea mays cDNA, mRNA sequence Length = 201 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 19 atcgatcaccttcctgccatcc 40 >gi|18181325|gb|BM382535.1|BM382535 MEST551-A12.univ ISUM6 Zea mays cDNA clone MEST551-A12 3', mRNA sequence Length = 578 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 175 atcgatcaccttcctgccatcc 196 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 329 ggccagcgcatgaacaccagcaccgagtgcttcc 362 >gi|37373816|gb|CF623230.1|CF623230 zmrws05_0A10-005-e02.s3 zmrws05 Zea mays cDNA 3', mRNA sequence Length = 563 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 184 atcgatcaccttcctgccatcc 205 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 338 ggccagcgcatgaacaccagcaccgagtgcttcc 371 >gi|44900980|gb|CK827525.1|CK827525 zmrsub1_0B20-007-h04.s2 zmrsub1 Zea mays cDNA 3', mRNA sequence Length = 578 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 184 atcgatcaccttcctgccatcc 205 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 338 ggccagcgcatgaacaccagcaccgagtgcttcc 371 >gi|50330858|gb|CO525984.1|CO525984 3530_1_172_1_H07.x_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence Length = 171 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 79 atcgatcaccttcctgccatcc 100 >gi|60340154|gb|DN207127.1|DN207127 MEST844_A06.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 735 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 138 atcgatcaccttcctgccatcc 159 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 292 ggccagcgcatgaacaccagcaccgagtgcttcc 325 >gi|60349583|gb|DN216556.1|DN216556 MEST1037_F08.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRNA sequence Length = 553 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 195 atcgatcaccttcctgccatcc 216 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 349 ggccagcgcatgaacaccagcaccgagtgcttcc 382 >gi|71433805|gb|DR814855.1|DR814855 ZM_BFb0044L11.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 719 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 152 atcgatcaccttcctgccatcc 173 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 306 ggccagcgcatgaacaccagcaccgagtgcttcc 339 >gi|84969567|gb|DT651866.2|DT651866 ZM_BFb0116F03.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 547 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 249 atcgatcaccttcctgccatcc 270 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 403 ggccagcgcatgaacaccagcaccgagtgcttcc 436 >gi|74233999|gb|DT641913.1|DT641913 ZM_BFb0100D06.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 713 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 151 atcgatcaccttcctgccatcc 172 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 305 ggccagcgcatgaacaccagcaccgagtgcttcc 338 >gi|76017303|gb|DT944473.1|DT944473 ZM_BFb0131E08.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 729 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 151 atcgatcaccttcctgccatcc 172 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 305 ggccagcgcatgaacaccagcaccgagtgcttcc 338 >gi|76290564|gb|DV030132.1|DV030132 ZM_BFb0152N10.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 728 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 186 atcgatcaccttcctgccatcc 207 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 340 ggccagcgcatgaacaccagcaccgagtgcttcc 373 >gi|83278496|gb|DV942504.1|DV942504 1000133-D04.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence Length = 754 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 68 atcgatcaccttcctgccatcc 89 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 222 ggccagcgcatgaacaccagcaccgagtgcttcc 255 >gi|88752861|gb|DY537002.1|DY537002 ZM_BFb0270P18.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 684 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 188 atcgatcaccttcctgccatcc 209 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 342 ggccagcgcatgaacaccagcaccgagtgcttcc 375 >gi|21208812|gb|AY105734.1| Zea mays PCO075201 mRNA sequence Length = 676 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 158 atcgatcaccttcctgccatcc 179 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 312 ggccagcgcatgaacaccagcaccgagtgcttcc 345 >gi|21208812|gb|AY105734.1| Zea mays PCO075201 mRNA sequence Length = 676 Score = 44.1 bits (22), Expect = 0.008 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgccatcc 77 |||||||||||||||||||||| Sbjct: 158 atcgatcaccttcctgccatcc 179 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 312 ggccagcgcatgaacaccagcaccgagtgcttcc 345 >gi|88747485|gb|DY531626.1|DY531626 ZM_BFb0250I18.f ZM_BFb Zea mays cDNA 3', mRNA sequence Length = 721 Score = 36.2 bits (18), Expect = 1.8 Identities = 30/34 (88%) Strand = Plus / Plus Query: 204 ggccagcggaggaacatgagcaccgagtgcttcc 237 |||||||| | ||||| |||||||||||||||| Sbjct: 306 ggccagcgcatgaacaccagcaccgagtgcttcc 339 Score = 36.2 bits (18), Expect = 1.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 56 atcgatcaccttcctgcc 73 |||||||||||||||||| Sbjct: 152 atcgatcaccttcctgcc 169 >gi|91630497|gb|AC185110.1| Zea mays chromosome UNK clone CH201-528E5; ZMMBBc0528E05, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces Length = 182209 Score = 36.2 bits (18), Expect = 1.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 tcatggttgtcaaccatg 38 |||||||||||||||||| Sbjct: 114518 tcatggttgtcaaccatg 114535 >gi|90992694|gb|AC184697.1| Zea mays chromosome UNK clone ZMMBBb-436O23; ZMMBBb0436O23, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces Length = 122910 Score = 36.2 bits (18), Expect = 1.8 Identities = 18/18 (100%) Strand = Plus / Plus Query: 188 accttgtttcgtgtttgg 205 |||||||||||||||||| Sbjct: 112916 accttgtttcgtgtttgg 112933 >gi|92087079|gb|AC157320.2| Zea mays clone ZMMBBb-7C14, complete sequence Length = 132140 Score = 36.2 bits (18), Expect = 1.8 Identities = 18/18 (100%) Strand = Plus / Minus Query: 32 aaccatgaagaaatgaga 49 |||||||||||||||||| Sbjct: 20135 aaccatgaagaaatgaga 20118 >gi|76936760|gb|DV174869.1|DV174869 ZM_BFb0179B04.r ZM_BFb Zea mays cDNA 5', mRNA sequence Length = 745 Score = 34.2 bits (17), Expect = 7.3 Identities = 20/21 (95%) Strand = Plus / Plus Query: 128 agccgtctcccctgccttgag 148 |||| |||||||||||||||| Sbjct: 162 agccttctcccctgccttgag 182 >gi|92899634|gb|AC185416.1| Zea mays chromosome UNK clone CH201-528K19; ZMMBBc0528K19, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces Length = 134988 Score = 34.2 bits (17), Expect = 7.3 Identities = 17/17 (100%) Strand = Plus / Minus Query: 135 tcccctgccttgagatg 151 ||||||||||||||||| Sbjct: 24269 tcccctgccttgagatg 24253 Database: mais_NCBI.fasta Posted date: Apr 26, 2006 11:51 AM Number of letters in database: 669,372,029 Number of sequences in database: 836,351 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 70,718 Number of Sequences: 836351 Number of extensions: 70718 Number of successful extensions: 17579 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17509 Number of HSP's gapped (non-prelim): 70 length of query: 237 length of database: 669,372,029 effective HSP length: 19 effective length of query: 218 effective length of database: 653,481,360 effective search space: 142458936480 effective search space used: 142458936480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 17 (34.2 bits)