TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN949159.1|DN949159 KUCD01_13_G03_T3 WSWR cDNA library T... 163 9e-040
gb|DR733411.1|DR733411 FGAS079169 Triticum aestivum FGAS: L... 131 3e-030
gb|CA636584.1|CA636584 wle1n.pk0109.h1 wle1n Triticum aesti... 111 3e-024
gb|CD934785.1|CD934785 OV.001O16F000912 OV Triticum aestivu... 111 3e-024
gb|CK208792.1|CK208792 FGAS020512 Triticum aestivum FGAS: L... 111 3e-024
gb|CK209475.1|CK209475 FGAS021241 Triticum aestivum FGAS: L... 111 3e-024
emb|AX046854.1| Sequence 41 from Patent WO0068389 111 3e-024
emb|AX046858.1| Sequence 45 from Patent WO0068389 111 3e-024
gb|BT009237.1| Triticum aestivum clone wle1n.pk0109.h1:fis,... 111 3e-024
gb|AY496058.1| Triticum aestivum auxin transporter PIN1 mRN... 109 1e-023
gb|CK208849.1|CK208849 FGAS020571 Triticum aestivum FGAS: L... 106 8e-023
gb|CD930730.1|CD930730 GR45.112D14F010511 GR45 Triticum aes... 106 1e-022
gb|CD894955.1|CD894955 G118.127J11F010824 G118 Triticum aes... 104 4e-022
gb|CN013068.1|CN013068 WHE3956_D07_G14ZS Wheat Fusarium gra... 104 4e-022
emb|AX046850.1| Sequence 37 from Patent WO0068389 104 4e-022
gb|BT008949.1| Triticum aestivum clone wdk1c.pk008.g12:fis,... 104 4e-022
>gb|DN949159.1|DN949159 KUCD01_13_G03_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 1214
Score = 163 bits (350), Expect = 9e-040
Identities = 69/100 (69%), Positives = 73/100 (73%)
Frame = +1 / +2
Query: 61 PIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSF 240
P MIS IYHVLE T PLYVAMI+AYLSI+WWKLFTPEQCSGINKFVA FSIPLLSF
Sbjct: 215 PPSIMISWVAIYHVLEATTPLYVAMILAYLSIKWWKLFTPEQCSGINKFVANFSIPLLSF 394
Query: 241 QILSTNXXXXXNLKXXXXXXXQKSXXLLGFAXASRVCCXE 360
Q++STN NLK QKS LLGFA SR CC E
Sbjct: 395 QVISTNNPYDMNLKLIFADILQKSIALLGFAAISRACCAE 514
Score = 143 bits (306), Expect = 1e-033
Identities = 59/100 (59%), Positives = 67/100 (67%)
Frame = -3 / -3
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S QH L+ ANPS DFC RF FVE WKE +GME ATNLLIPEHCS
Sbjct: 513 SAQHALDMAANPSKAIDFCRMSANMSLRFMS*GLFVEMTWKERRGMEKLATNLLIPEHCS 334
Query: 179 GVNSFHHCMDR*ATIIATYRGTVSSRTW*MXXXEIMVGIG 60
GVN+FHH MDR*A+I+ATY G V+SRTW*M EI++ G
Sbjct: 333 GVNNFHHFMDR*ASIMATYNGVVASRTW*MATQEIIMDGG 214
Score = 121 bits (259), Expect = 3e-027
Identities = 56/98 (57%), Positives = 62/98 (63%)
Frame = -2 / -2
Query: 360 LLAAHPRGXCKPQQXXRFLXXXXXXXLQVXXVXXVCREDLEREQRDGKLRYELVDTGALL 181
L A R CKPQQ R L L+V V VC +DLERE+RDG++ +ELVD ALL
Sbjct: 514 LCATCSRYGCKPQQGDRLL*DVCEYELEVHVVRIVCGDDLEREKRDGEIGHELVDPRALL 335
Query: 180 WREQLPPLYG*VGHYHSYIQGNRFFKNMVDXXXRDHGG 67
W EQLPP YG*VG YH YIQ FKNMVD RDH G
Sbjct: 334 WSEQLPPFYG*VG*YHGYIQWCCRFKNMVDGYPRDHNG 221
Score = 112 bits (239), Expect = 2e-024
Identities = 48/98 (48%), Positives = 62/98 (63%)
Frame = +3 / +1
Query: 60 SNSHHDLXXXHLPCS*RNGSPVCSYDSGLPIHTMVEAVHARAVLRYQQVRSEVFHPFALF 239
S+ H+DL HLPCS* + + VCS+D+ LPIH MVE VH+RAVL QQVR + HP +LF
Sbjct: 214 SSIHYDLLGSHLPCS*SDNTIVCSHDTSLPIHKMVEVVHSRAVLWDQQVRGQFLHPSSLF 393
Query: 240 PDPLYKXXXXXEPEXXXXXXXTEIAXXAGVCXXL*GVL 353
P L+K EP+ TE+ AGVC +* +L
Sbjct: 394 PGHLHKQSLRHEPQAHIRRHPTEVDRLAGVCSHI*SML 507
>gb|DR733411.1|DR733411 FGAS079169 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 824
Score = 131 bits (281), Expect = 3e-030
Identities = 55/81 (67%), Positives = 59/81 (72%)
Frame = +1 / +1
Query: 118 PLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILSTNXXXXXNLKXXXXX 297
P AMI+AYLSI+WWKLFTPEQCSGINKFVA FSIPLLSFQ++STN NLK
Sbjct: 97 PTRPAMILAYLSIKWWKLFTPEQCSGINKFVANFSIPLLSFQVISTNNPYDMNLKLIFAD 276
Query: 298 XXQKSXXLLGFAXASRVCCXE 360
QKS LLGFA SR CC E
Sbjct: 277 ILQKSIALLGFAAISRACCVE 339
Score = 113 bits (241), Expect = 9e-025
Identities = 46/77 (59%), Positives = 51/77 (66%)
Frame = -3 / -1
Query: 359 SXQHTLEAXANPSXXXDFCXXXXXXXFRFXXXXXFVERIWKESKGMENFATNLLIPEHCS 180
S QH L+ ANPS DFC RF FVE WKE +GME ATNLLIPEHCS
Sbjct: 338 STQHALDMAANPSKAIDFCRMSANMSLRFMS*GLFVEMTWKERRGMEKLATNLLIPEHCS 159
Query: 179 GVNSFHHCMDR*ATIIA 129
GVN+FHH MDR*A+I+A
Sbjct: 158 GVNNFHHFMDR*ASIMA 108
>gb|CA636584.1|CA636584 wle1n.pk0109.h1 wle1n Triticum aestivum cDNA clone wle1n.pk0109.h1
5' end, mRNA sequence
Length = 415
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 129 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 308
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 309 TNNPYTMNLRFIAADTLQK 365
>gb|CD934785.1|CD934785 OV.001O16F000912 OV Triticum aestivum cDNA clone OV001O16, mRNA
sequence
Length = 722
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 113 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 292
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 293 TNNPYTMNLRFIAADTLQK 349
>gb|CK208792.1|CK208792 FGAS020512 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1105
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 109 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 288
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 289 TNNPYTMNLRFIAADTLQK 345
>gb|CK209475.1|CK209475 FGAS021241 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1107
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 84 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 263
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 264 TNNPYTMNLRFIAADTLQK 320
>emb|AX046854.1| Sequence 41 from Patent WO0068389
Length = 415
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 129 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 308
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 309 TNNPYTMNLRFIAADTLQK 365
>emb|AX046858.1| Sequence 45 from Patent WO0068389
Length = 425
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 136 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 315
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 316 TNNPYTMNLRFIAADTLQK 372
>gb|BT009237.1| Triticum aestivum clone wle1n.pk0109.h1:fis, full insert mRNA
sequence
Length = 425
Score = 111 bits (237), Expect = 3e-024
Identities = 43/79 (54%), Positives = 55/79 (69%)
Frame = +1 / -1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 290 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 111
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 110 TNNPYTMNLRFIAADTLQK 54
>gb|AY496058.1| Triticum aestivum auxin transporter PIN1 mRNA, complete cds
Length = 1764
Score = 109 bits (233), Expect = 1e-023
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAM++AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 4 MITGTDFYHVMTAMVPLYVAMMLAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHFIS 183
Query: 253 TNXXXXXNLKXXXXXXXQK 309
TN NL+ QK
Sbjct: 184 TNNPYTMNLRFIAADTLQK 240
>gb|CK208849.1|CK208849 FGAS020571 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1109
Score = 106 bits (227), Expect = 8e-023
Identities = 42/79 (53%), Positives = 54/79 (68%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 109 MIAGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAVPLLSFHWIS 288
Query: 253 TNXXXXXNLKXXXXXXXQK 309
N NL+ QK
Sbjct: 289 GNNPYTMNLRFIAADTLQK 345
>gb|CD930730.1|CD930730 GR45.112D14F010511 GR45 Triticum aestivum cDNA clone GR45112D14,
mRNA sequence
Length = 597
Score = 106 bits (226), Expect = 1e-022
Identities = 42/79 (53%), Positives = 54/79 (68%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WW +FTP+QCSGIN+FVA F+ PLLSF +S
Sbjct: 150 MITGTDFYHVMTAVVPLYVAMILAYGSVKWWGIFTPDQCSGINRFVALFAGPLLSFHFIS 329
Query: 253 TNXXXXXNLKXXXXXXXQK 309
+N NL+ QK
Sbjct: 330 SNNPYTMNLRFIAADTLQK 386
>gb|CD894955.1|CD894955 G118.127J11F010824 G118 Triticum aestivum cDNA clone G118127J11,
mRNA sequence
Length = 658
Score = 104 bits (222), Expect = 4e-022
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +1 / +1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ IY VL VPLYVAM +AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 88 MITGKDIYDVLAAVVPLYVAMFMAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 267
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFA 333
TN + + QK L A
Sbjct: 268 TNDPYAMDYRFLAADSLQKLVILAALA 348
>gb|CN013068.1|CN013068 WHE3956_D07_G14ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3956_D07_G14,
mRNA sequence
Length = 629
Score = 104 bits (222), Expect = 4e-022
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ IY VL VPLYVAM +AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 101 MITGKDIYDVLAAVVPLYVAMFMAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 280
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFA 333
TN + + QK L A
Sbjct: 281 TNDPYAMDYRFLAADSLQKLVILAALA 361
>emb|AX046850.1| Sequence 37 from Patent WO0068389
Length = 2293
Score = 104 bits (222), Expect = 4e-022
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ IY VL VPLYVAM +AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 74 MITGKDIYDVLAAVVPLYVAMFMAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 253
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFA 333
TN + + QK L A
Sbjct: 254 TNDPYAMDYRFLAADSLQKLVILAALA 334
>gb|BT008949.1| Triticum aestivum clone wdk1c.pk008.g12:fis, full insert mRNA
sequence
Length = 2293
Score = 104 bits (222), Expect = 4e-022
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ IY VL VPLYVAM +AY S++WW +FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 74 MITGKDIYDVLAAVVPLYVAMFMAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 253
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFA 333
TN + + QK L A
Sbjct: 254 TNDPYAMDYRFLAADSLQKLVILAALA 334
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 295,513,598
Number of Sequences: 636343
Number of extensions: 3309448
Number of successful extensions: 157463
Number of sequences better than 1.0e-020: 22
length of database: 122,413,413
effective HSP length: 51
effective length of database: 89,959,920
effective search space used: 6117274560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)