TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH2g03.yg.2.1
(537 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ743211.1|BQ743211 WHE4101_D09_G17ZS Wheat salt-stresse... 96 4e-042
gb|BU099331.1|BU099331 WHE3306_C03_E06ZS Chinese Spring whe... 96 2e-036
gb|DQ086486.1| Triticum aestivum putative 1,3-beta-glucan s... 96 3e-036
gb|CA501322.1|CA501322 WHE4032_B11_D22ZT Wheat meiotic anth... 94 2e-034
gb|BE498502.1|BE498502 WHE0967_A12_A23ZS Wheat pre-anthesis... 90 2e-031
gb|CK206579.1|CK206579 FGAS018178 Triticum aestivum FGAS: L... 77 2e-021
>gb|BQ743211.1|BQ743211 WHE4101_D09_G17ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4101_D09_G17, mRNA sequence
Length = 705
Score = 95.9 bits (203), Expect(3) = 4e-042
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +3 / +3
Query: 363 SLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMXNLL 536
+LDQ IY+IKLPG I+ EGKPENQ HAIIFTR QTIDMNQ++Y+EE KM N+L
Sbjct: 525 NLDQEIYRIKLPGPPIIGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEAYKMRNVL 698
Score = 76.7 bits (161), Expect(3) = 4e-042
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +3 / +3
Query: 105 LKTQCKAIADMKFTYVVSCQLYGIQKRSNEPCAHDILRLMTEYPSLRVAYIDEVE 269
L T+ A+ADMKF+YV+SCQ +G QK + + A DI+ LM YP+LRVAYI+E E
Sbjct: 300 LSTELDALADMKFSYVISCQKFGEQKSNGDVHAQDIIDLMARYPALRVAYIEEKE 464
Score = 37.7 bits (76), Expect(3) = 4e-042
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3 / +3
Query: 3 YRKALELQAFLDMANNDDLMKG 68
YRKAL LQAFLD N+ +L KG
Sbjct: 186 YRKALRLQAFLDRTNDQELYKG 251
>gb|BU099331.1|BU099331 WHE3306_C03_E06ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3306_C03_E06,
mRNA sequence
Length = 646
Score = 95.9 bits (203), Expect(2) = 2e-036
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +3 / +1
Query: 363 SLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMXNLL 536
+LDQ IY+IKLPG I+ EGKPENQ HAIIFTR QTIDMNQ++Y+EE KM N+L
Sbjct: 319 NLDQEIYRIKLPGPPIIGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEAYKMRNVL 492
Score = 77.1 bits (162), Expect(2) = 2e-036
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +3 / +1
Query: 105 LKTQCKAIADMKFTYVVSCQLYGIQKRSNEPCAHDILRLMTEYPSLRVAYIDEVE 269
L T+ A+ADMKF+YV+SCQ +G QK + + A DI+ LM YP+LRVAYI+E E
Sbjct: 94 LSTELDALADMKFSYVISCQKFGEQKSNGDAHAQDIIDLMARYPALRVAYIEEKE 258
>gb|DQ086486.1| Triticum aestivum putative 1,3-beta-glucan synthase 10 (GSL10)
mRNA, partial cds
Length = 550
Score = 95.9 bits (203), Expect(2) = 3e-036
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +3 / +1
Query: 363 SLDQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMXNLL 536
+LDQ IY+IKLPG I+ EGKPENQ HAIIFTR QTIDMNQ++Y+EE KM N+L
Sbjct: 271 NLDQEIYRIKLPGPPIIGEGKPENQDHAIIFTRGEALQTIDMNQDNYLEEAYKMRNVL 444
Score = 76.7 bits (161), Expect(2) = 3e-036
Identities = 31/55 (56%), Positives = 41/55 (74%)
Frame = +3 / +1
Query: 105 LKTQCKAIADMKFTYVVSCQLYGIQKRSNEPCAHDILRLMTEYPSLRVAYIDEVE 269
L T+ A+ADMKF+YV+SCQ +G QK + + A DI+ LM YP+LRVAYI+E E
Sbjct: 46 LSTELDALADMKFSYVISCQKFGEQKSNGDVHAQDIIDLMARYPALRVAYIEEKE 210
>gb|CA501322.1|CA501322 WHE4032_B11_D22ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4032_B11_D22, mRNA sequence
Length = 749
Score = 94.1 bits (199), Expect(2) = 2e-034
Identities = 38/56 (67%), Positives = 43/56 (76%)
Frame = +3 / +1
Query: 369 DQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMXNLL 536
D+ IY +KLPGN L EGKPENQ HA+IFTR QTIDMNQ++Y EE LKM NLL
Sbjct: 331 DKEIYSVKLPGNPKLGEGKPENQNHAVIFTRGNAVQTIDMNQDNYFEEALKMRNLL 498
Score = 72.1 bits (151), Expect(2) = 2e-034
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +3 / +1
Query: 45 NNDDLMKGYRAMEVMSEDSPLKTQCKAIADMKFTYVVSCQLYGIQKRSNEPCAHDILRLM 224
+++DL + + + +A AD+KFTYVV+CQ+YG+QK +P A DI LM
Sbjct: 37 HSEDLESAFDMAGLADTHFEYSPEARAQADLKFTYVVTCQIYGVQKGEGKPEAADIALLM 216
Query: 225 TEYPSLRVAYIDEVEA 272
+LR+AYID VE+
Sbjct: 217 QRNEALRIAYIDVVES 264
>gb|BE498502.1|BE498502 WHE0967_A12_A23ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0967_A12_A23, mRNA sequence
Length = 559
Score = 89.5 bits (189), Expect(2) = 2e-031
Identities = 37/56 (66%), Positives = 42/56 (75%)
Frame = +3 / +2
Query: 369 DQVIYKIKLPGNAILXEGKPENQXHAIIFTRXXXXQTIDMNQEHYMEEXLKMXNLL 536
DQ IY IKLP N L EGKPENQ HAIIFTR QTIDMNQ++Y+EE +K+ N L
Sbjct: 290 DQEIYSIKLPXNPKLGEGKPENQNHAIIFTRGDAIQTIDMNQDNYLEEAMKVRNXL 457
Score = 66.6 bits (139), Expect(2) = 2e-031
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = +3 / +2
Query: 105 LKTQCKAIADMKFTYVVSCQLYGIQKRSNEPCAHDILRLMTEYPSLRVAYIDEVEAPSKD 284
L +A AD+KFTYVVSCQ+YG QK+ P A DI L+ +LRVA+I E + S D
Sbjct: 53 LSPDARAQADLKFTYVVSCQIYGQQKQRKAPEAADIALLLQRNEALRVAFIHEEDGVSSD 232
>gb|CK206579.1|CK206579 FGAS018178 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1115
Score = 76.7 bits (161), Expect(3) = 2e-021
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +3 / +3
Query: 105 LKTQCKAIADMKFTYVVSCQLYGIQKRSNEPCAHDILRLMTEYPSLRVAYIDE 263
L T+ A+ADMKF+YV+SCQ +G QK + + A DI+ LM+ YP+LRVAYI+E
Sbjct: 657 LSTELDALADMKFSYVISCQKFGEQKSNGDAHAKDIIELMSRYPALRVAYIEE 815
Score = 37.7 bits (76), Expect(3) = 2e-021
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3 / +3
Query: 3 YRKALELQAFLDMANNDDLMKG 68
YRKAL LQAFLD N+ +L KG
Sbjct: 543 YRKALRLQAFLDRTNDQELYKG 608
Score = 25.4 bits (49), Expect(3) = 2e-021
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3 / +3
Query: 366 LDQVIYKIKLPGNAILXEG 422
LDQ IY+IKL G+ + +G
Sbjct: 882 LDQEIYRIKLXGSPSMEKG 938
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 373,276,438
Number of Sequences: 636343
Number of extensions: 4134535
Number of successful extensions: 42004
Number of sequences better than 1.0e-020: 8
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 11254770702
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)