TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063F13F020916.3.1
(668 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV779527.1|CV779527 FGAS073936 Triticum aestivum FGAS: L... 89 8e-024
gb|CD876596.1|CD876596 AZO3.110E16F011010 AZO3 Triticum aes... 84 5e-023
gb|BG606613.1|BG606613 WHE2958_G07_N14ZS Wheat dormant embr... 106 3e-022
gb|DR734125.1|DR734125 FGAS079881 Triticum aestivum FGAS: L... 105 5e-022
>gb|CV779527.1|CV779527 FGAS073936 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 825
Score = 89.0 bits (188), Expect(2) = 8e-024
Identities = 30/47 (63%), Positives = 37/47 (78%)
Frame = +2 / +1
Query: 137 LPVTLPGCPDKCGNISIPYPFGTKEGCFKPDFEVLCNDSFHPPRAFI 277
LP+T PGCPDKCGN+SIP+PFG GCF+ F+V C+ S PPRAF+
Sbjct: 229 LPITRPGCPDKCGNLSIPFPFGLMPGCFREGFQVTCDHSVDPPRAFL 369
Score = 41.8 bits (85), Expect(2) = 8e-024
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2 / +1
Query: 293 KITVDDTYYKTNEDGIPDNDIGSSEWPIELVDVSVSEGKARVLGAFSYDCKMNDTYHAVR 472
+I V D D +S +P+ELVD+S +AR G + C N T + +
Sbjct: 388 RIMVTDRDASAASDAAAYLXFNTSYFPVELVDMSADRSQARAYGPITSGCSTNSTQYRFQ 567
Query: 473 RQEIDLG 493
Q + LG
Sbjct: 568 TQAMTLG 588
>gb|CD876596.1|CD876596 AZO3.110E16F011010 AZO3 Triticum aestivum cDNA clone AZO3110E16,
mRNA sequence
Length = 626
Score = 84.5 bits (178), Expect(3) = 5e-023
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +2 / +1
Query: 137 LPVTLPGCPDKCGNISIPYPFGTKEGCFKPDFEVLCNDSFHPPRAFI 277
LP+T PGCPDKCGN+SIP+PFG GCF+ F+V C+ S PRAF+
Sbjct: 145 LPITRPGCPDKCGNMSIPFPFGLMPGCFREGFQVTCDHSVDRPRAFL 285
Score = 41.8 bits (85), Expect(3) = 5e-023
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2 / +1
Query: 293 KITVDDTYYKTNEDGIPDNDIGSSEWPIELVDVSVSEGKARVLGAFSYDCKMNDTYHAVR 472
+ITV D+ D +S +P+ELVD+S +AR G + C N T + +
Sbjct: 304 RITVTDSDASAASDAAAYLGYNTSYFPVELVDMSADRSQARAYGPITSGCSTNSTQYRFQ 483
Query: 473 RQEIDLG 493
Q + G
Sbjct: 484 TQAMTPG 504
Score = 21.7 bits (41), Expect(3) = 5e-023
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3 / +2
Query: 516 RTPMMCSWASGATSSPSRHP 575
R+ +WA G+TSS + P
Sbjct: 536 RSTSSSAWAGGSTSSWTARP 595
>gb|BG606613.1|BG606613 WHE2958_G07_N14ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2958_G07_N14, mRNA sequence
Length = 627
Score = 106 bits (226), Expect = 3e-022
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +2 / +3
Query: 140 PVTLPGCPDKCGNISIPYPFGTKEGCFKPDFEVLCNDSFHPPRAFIQMAGAKITVDDTYY 319
P TLPGCPDKCGN+SIPYPFGT++GCF P F+++CN +FHPPRAF + D Y
Sbjct: 342 PTTLPGCPDKCGNVSIPYPFGTQDGCFLPGFQIICNHTFHPPRAFFPAEYFRSGPDMVYS 521
Query: 320 K 322
K
Sbjct: 522 K 524
>gb|DR734125.1|DR734125 FGAS079881 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 867
Score = 105 bits (224), Expect = 5e-022
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +2 / +3
Query: 140 PVTLPGCPDKCGNISIPYPFGTKEGCFKPDFEVLCNDSFHPPRAFIQMAGAKITVDDTYY 319
P+TLPGCPDKCGNISIPYPFG K GCF+ F+V CNDSF+P RA++ G +++ Y+
Sbjct: 162 PITLPGCPDKCGNISIPYPFGMKPGCFREGFQVTCNDSFYPHRAYLAYDGVFQRINEIYF 341
Query: 320 K 322
+
Sbjct: 342 R 344
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 625,709,398
Number of Sequences: 636343
Number of extensions: 9861863
Number of successful extensions: 156621
Number of sequences better than 1.0e-020: 6
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 14988142546
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)