TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE442894.1|BE442894 WHE1107_A11_B21ZS Wheat etiolated se... 65 4e-033
gb|BE516585.1|BE516585 WHE0630_D09_G18ZA Wheat ABA-treated ... 79 7e-032
gb|CV770951.1|CV770951 FGAS065344 Triticum aestivum FGAS: L... 60 8e-032
gb|BQ752969.1|BQ752969 WHE4121_D03_G05ZS Wheat salt-stresse... 57 2e-031
gb|CK200532.1|CK200532 FGAS009047 Triticum aestivum FGAS: L... 63 1e-028
>gb|BE442894.1|BE442894 WHE1107_A11_B21ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1107_A11_B21,
mRNA sequence
Length = 662
Score = 64.8 bits (135), Expect(4) = 4e-033
Identities = 26/44 (59%), Positives = 30/44 (68%)
Frame = +3 / +2
Query: 459 ERAPHPPYYVMGLPESYYNRLFPRQSVHLFXSSYXXQXRXQEPE 590
+ A PPYYV+GLP S+YNRL P QSVHLF SSY + PE
Sbjct: 392 DEAATPPYYVVGLPGSFYNRLCPSQSVHLFHSSYSLHWLSKVPE 523
Score = 46.4 bits (95), Expect(4) = 4e-033
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3 / +2
Query: 357 HHVELQFVLNDLPGNDFNHLFRSVEE 434
H VELQF+LNDLP NDFN +F+S+++
Sbjct: 284 HGVELQFLLNDLPKNDFNLIFQSLDQ 361
Score = 44.6 bits (91), Expect(4) = 4e-033
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3 / +2
Query: 72 MDIRRDFHMAEGEGEWSYSKNCRRQQVAVXXTRPMVETAVKQVYAALLPRTMVV 233
M + HMA G+GE SY+ N R A+ RP+++ V++VY +L + +V
Sbjct: 20 MKVEDVLHMATGDGENSYAANSRIPMKAMLKNRPLLQRTVEEVYTSLSSASTMV 181
Score = 41.8 bits (85), Expect(4) = 4e-033
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3 / +2
Query: 222 TMVVADLGCSAGPNTLLFISSVLSSI 299
TMVVADLGCS+GPN L ++ V I
Sbjct: 173 TMVVADLGCSSGPNALFIVAEVTGMI 250
>gb|BE516585.1|BE516585 WHE0630_D09_G18ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE0630_D09_G18, mRNA sequence
Length = 515
Score = 79.4 bits (167), Expect(3) = 7e-032
Identities = 32/60 (53%), Positives = 39/60 (65%)
Frame = +3 / +2
Query: 474 PPYYVMGLPESYYNRLFPRQSVHLFXSSYXXQXRXQEPEGXXAXRKPCLNXXXIYIAXXT 653
PP+Y+ GLP S+Y +LFPR SVHLF SSY R + P+G A R+ LN IYIA T
Sbjct: 299 PPFYIAGLPGSFYTKLFPRHSVHLFHSSYCLHWRSELPDGFAAKREMYLNKENIYIARTT 478
Score = 52.4 bits (108), Expect(3) = 7e-032
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +3 / +2
Query: 180 ETAVKQVYAALLPRTMVVADLGCSAGPNTLLFISSVLSSI 299
E AV +V LL TM+V DLGCS+G NTL+F+S+V+ +I
Sbjct: 32 EKAVIEVCMDLLHPTMIVVDLGCSSGENTLIFVSNVIEAI 151
Score = 44.1 bits (90), Expect(3) = 7e-032
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3 / +2
Query: 363 VELQFVLNDLPGNDFNHLFRSVEE 434
+ELQ LNDLPGNDFN +F+S+E+
Sbjct: 185 MELQVFLNDLPGNDFNRVFQSLEQ 256
>gb|CV770951.1|CV770951 FGAS065344 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 861
Score = 60.2 bits (125), Expect(4) = 8e-032
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +3 / +2
Query: 477 PYYVMGLPESYYNRLFPRQSVHLFXSSYXXQXRXQEPE 590
PYYV GLP SYY +LFP +SVH F SSY R + PE
Sbjct: 440 PYYVAGLPGSYYTKLFPSRSVHFFHSSYSLMWRSKVPE 553
Score = 47.8 bits (98), Expect(4) = 8e-032
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +3 / +2
Query: 363 VELQFVLNDLPGNDFNHLFRSVEE 434
VE+QF LNDLPGNDFN +FRS+E+
Sbjct: 338 VEVQFFLNDLPGNDFNLVFRSLEQ 409
Score = 46.0 bits (94), Expect(4) = 8e-032
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3 / +2
Query: 222 TMVVADLGCSAGPNTLLFISSVLSSI 299
TMVVADLGCS+GPNTL +S V+ ++
Sbjct: 221 TMVVADLGCSSGPNTLRVVSEVIGAV 298
Score = 39.1 bits (79), Expect(4) = 8e-032
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3 / +2
Query: 114 EWSYSKNCRRQQVAVXXTRPMVETAVKQVYAALLPR 221
E SY+ N R Q+ A+ TRPM+ A+++VY +L R
Sbjct: 107 ENSYAANSRLQEKAILETRPMLRKAIEEVYKSLSDR 214
>gb|BQ752969.1|BQ752969 WHE4121_D03_G05ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4121_D03_G05, mRNA sequence
Length = 664
Score = 56.5 bits (117), Expect(4) = 2e-031
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +3 / +1
Query: 477 PYYVMGLPESYYNRLFPRQSVHLFXSSYXXQXRXQ 581
PYYV GLP SYY +LFP +SVHLF SSY R +
Sbjct: 412 PYYVAGLPGSYYRKLFPFRSVHLFHSSYSLMWRSK 516
Score = 49.2 bits (101), Expect(4) = 2e-031
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +3 / +1
Query: 363 VELQFVLNDLPGNDFNHLFRSVEE 434
VE+QF LNDLPGNDFN +FRS+EE
Sbjct: 310 VEVQFFLNDLPGNDFNLVFRSLEE 381
Score = 47.3 bits (97), Expect(4) = 2e-031
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3 / +1
Query: 96 MAEGEGEWSYSKNCRRQQVAVXXTRPMVETAVKQVYAALLPRTMVV 233
MA G GE SY+ N R Q+ A+ TRP++ A+++VY +L R ++
Sbjct: 61 MATGNGENSYAANSRLQEKAILETRPVLREAIEEVYKSLSDRRSMI 198
Score = 38.6 bits (78), Expect(4) = 2e-031
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 225 MVVADLGCSAGPNTLLFISSVLSSI 299
+VVADLGCS+GPNTL +S + ++
Sbjct: 196 IVVADLGCSSGPNTLRVVSEGIGAV 270
>gb|CK200532.1|CK200532 FGAS009047 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 808
Score = 62.9 bits (131), Expect(4) = 1e-028
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3 / +3
Query: 459 ERAPHPPYYVMGLPESYYNRLFPRQSVHLFXSSYXXQXRXQEPE 590
+ A PPYYV+GLP S+YNRL P QSVHLF SSY + P+
Sbjct: 498 DEAVTPPYYVVGLPGSFYNRLCPSQSVHLFHSSYSLHWLSKVPD 629
Score = 44.1 bits (90), Expect(4) = 1e-028
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3 / +3
Query: 72 MDIRRDFHMAEGEGEWSYSKNCRRQQVAVXXTRPMVETAVKQVYAAL 212
M + HMA G+GE SY+ N R A+ RP+++ V++VY +L
Sbjct: 120 MKVEDVLHMATGDGENSYAANSRIPMKAMLKNRPLLQRTVEEVYTSL 260
Score = 43.7 bits (89), Expect(4) = 1e-028
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +3 / +3
Query: 363 VELQFVLNDLPGNDFNHLFRSVEE 434
VELQF+LNDLP NDFN +F+S+++
Sbjct: 396 VELQFLLNDLPRNDFNLIFQSLDQ 467
Score = 31.8 bits (63), Expect(4) = 1e-028
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3 / +3
Query: 237 DLGCSAGPNTLLFISSVLSSI 299
DLGCS+GPN L ++ V I
Sbjct: 297 DLGCSSGPNALFIVTEVTGMI 359
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 631,327,556
Number of Sequences: 636343
Number of extensions: 9760601
Number of successful extensions: 134493
Number of sequences better than 1.0e-020: 8
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 14633393610
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)