TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ248938.1|BJ248938 BJ248938 Y. Ogihara unpublished cDNA... 144 4e-034
gb|BJ317548.1|BJ317548 BJ317548 Y. Ogihara unpublished cDNA... 131 4e-030
gb|AF347064.1| Triticum aestivum sucrose-phosphate synthase... 128 3e-029
gb|AF534907.1| Triticum aestivum sucrose-phosphate synthase... 116 7e-026
gb|DR739628.1|DR739628 FGAS084845 Triticum aestivum FGAS: L... 116 1e-025
gb|AF310160.1| Triticum aestivum sucrose-phosphate synthase... 116 1e-025
gb|CV765518.1|CV765518 FGAS059905 Triticum aestivum FGAS: L... 114 4e-025
gb|CK210266.1|CK210266 FGAS022067 Triticum aestivum FGAS: L... 111 2e-024
gb|CV766069.1|CV766069 FGAS060456 Triticum aestivum FGAS: L... 102 1e-021
>gb|BJ248938.1|BJ248938 BJ248938 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8l03 5', mRNA sequence
Length = 653
Score = 144 bits (310), Expect = 4e-034
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMVLTGHSLGRNKLEQI+ QGRMSKEEID+TYKIMRRIEGEELALDA+ELVITSTRQEID
Sbjct: 412 PMVLTGHSLGRNKLEQIMMQGRMSKEEIDATYKIMRRIEGEELALDAAELVITSTRQEID 591
Query: 16 EQWGL 2
EQWGL
Sbjct: 592 EQWGL 606
Score = 107 bits (229), Expect = 1e-023
Identities = 48/64 (75%), Positives = 50/64 (78%)
Frame = +1 / -2
Query: 1 TIPTVHQSPALCW**QALTHPGPAPHPRYAS*SCMLNRSPPWTCALASGFAPACSSQVSD 180
TIPT H+SPA C * QAL P PAP P+YAS*SC L RSPPWT ALAS APACSSQ SD
Sbjct: 607 TIPTAHRSPAWC**SQALLRPRPAPPPQYAS*SCRLRRSPPWTYALAS*SAPACSSQASD 428
Query: 181 Q*AP 192
Q*AP
Sbjct: 427 Q*AP 416
Score = 106 bits (227), Expect = 2e-023
Identities = 45/63 (71%), Positives = 51/63 (80%)
Frame = -1 / +3
Query: 191 GAHWSLTWEEQAGANPEARAHVQGGDRFNIQDHEAYRG*GAGPGCVRACHHQHKAGD**T 12
GAHWSL WEEQAGA+ +ARA+VQGGDR N+QDHEAY G GAG G RAC + H+AGD *
Sbjct: 417 GAHWSLAWEEQAGADYDARAYVQGGDRRNLQDHEAY*GGGAGLGRSRACDY*HQAGDR*A 596
Query: 11 VGI 3
VGI
Sbjct: 597 VGI 605
Score = 105 bits (223), Expect = 8e-023
Identities = 46/65 (70%), Positives = 49/65 (75%)
Frame = +3 / -1
Query: 3 NPHCSSISCLVLVMTXXXXXXXXXXXXIRLMILYVESISSLDMRPCFRICSSLFLPSE*P 182
NPHCSSISCLVLV+T IRLMIL V SISSLD+RPC ICSSLFLPSE*P
Sbjct: 605 NPHCSSISCLVLVITSSAASKASSSPSIRLMIL*VASISSLDIRPCIIICSSLFLPSE*P 426
Query: 183 VSTMG 197
VST+G
Sbjct: 425 VSTIG 411
>gb|BJ317548.1|BJ317548 BJ317548 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf28l19 5', mRNA sequence
Length = 684
Score = 131 bits (280), Expect = 4e-030
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGHSLGR+KLEQ+LKQGR +++EID+TYKIMRRIE EEL LDASE+VITSTRQEID
Sbjct: 331 PMVFTGHSLGRDKLEQLLKQGRQTRDEIDATYKIMRRIEAEELCLDASEIVITSTRQEID 510
Query: 16 EQWGL 2
+QWGL
Sbjct: 511 KQWGL 525
>gb|AF347064.1| Triticum aestivum sucrose-phosphate synthase 2 mRNA, partial cds
Length = 3420
Score = 128 bits (274), Expect = 3e-029
Identities = 51/65 (78%), Positives = 61/65 (93%)
Frame = -2 / +2
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV TGHSLGR+KLEQ+LKQGR +++E+++TYKIMRRIE EEL LDASE+VITSTRQEID
Sbjct: 830 PMVFTGHSLGRDKLEQLLKQGRQTRDEVNATYKIMRRIEAEELCLDASEIVITSTRQEID 1009
Query: 16 EQWGL 2
+QWGL
Sbjct: 1010 KQWGL 1024
>gb|AF534907.1| Triticum aestivum sucrose-phosphate synthase 9 mRNA, complete cds
Length = 3339
Score = 116 bits (249), Expect = 7e-026
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = -2 / +2
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PM TGH LG++KLE +LKQGR S+EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+
Sbjct: 1070 PMAFTGHFLGKDKLEGLLKQGRQSREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIE 1249
Query: 16 EQWGL 2
EQW L
Sbjct: 1250 EQWNL 1264
>gb|DR739628.1|DR739628 FGAS084845 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1101
Score = 116 bits (247), Expect = 1e-025
Identities = 47/65 (72%), Positives = 54/65 (83%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV+TGHSLGRNKLEQ+LK GRM EI TYKI RRIE EE LD +E+V+TST+QEI+
Sbjct: 646 PMVMTGHSLGRNKLEQLLKLGRMHGPEIQGTYKIARRIEAEETGLDTAEMVVTSTKQEIE 825
Query: 16 EQWGL 2
EQWGL
Sbjct: 826 EQWGL 840
>gb|AF310160.1| Triticum aestivum sucrose-phosphate synthase (SPS1) mRNA, complete
cds
Length = 3418
Score = 116 bits (247), Expect = 1e-025
Identities = 47/65 (72%), Positives = 54/65 (83%)
Frame = -2 / +2
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV+TGHSLGRNKLEQ+LK GRM EI TYKI RRIE EE LD +E+V+TST+QEI+
Sbjct: 1103 PMVMTGHSLGRNKLEQLLKLGRMHGPEIQGTYKIARRIEAEETGLDTAEMVVTSTKQEIE 1282
Query: 16 EQWGL 2
EQWGL
Sbjct: 1283 EQWGL 1297
>gb|CV765518.1|CV765518 FGAS059905 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 818
Score = 114 bits (243), Expect = 4e-025
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = -2 / +3
Query: 193 MVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDE 14
MV TGH LG++KLE +LKQGR ++EEI+ TYKIMRRIE EEL+LDASE+VI STRQEI+E
Sbjct: 198 MVFTGHFLGKDKLEGLLKQGRQTREEINMTYKIMRRIEAEELSLDASEIVIASTRQEIEE 377
Query: 13 QWGL 2
QW L
Sbjct: 378 QWNL 389
>gb|CK210266.1|CK210266 FGAS022067 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1149
Score = 111 bits (238), Expect = 2e-024
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = -2 / +1
Query: 196 PMVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEID 17
PMV+TGHSLGRNKLEQ+LK GRM + EI TYKI R IE EE LD +E+V+TST+QEI+
Sbjct: 769 PMVMTGHSLGRNKLEQLLKLGRMHRPEIQGTYKIARGIEAEETGLDRAEMVVTSTQQEIE 948
Query: 16 EQWG 5
EQWG
Sbjct: 949 EQWG 960
>gb|CV766069.1|CV766069 FGAS060456 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 837
Score = 102 bits (218), Expect = 1e-021
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = -2 / +1
Query: 193 MVLTGHSLGRNKLEQILKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITSTRQEIDE 14
MV TGH LG++KLE +LKQGR++ EEI+ TY+IMRRIE EEL+LDAS++VI STR EI+
Sbjct: 376 MVFTGHFLGKDKLEGLLKQGRLTVEEINMTYEIMRRIEAEELSLDASDIVIASTRLEIE* 555
Query: 13 QWGL 2
QW L
Sbjct: 556 QWNL 567
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 229,036,869
Number of Sequences: 636343
Number of extensions: 3305638
Number of successful extensions: 538755
Number of sequences better than 1.0e-020: 12
length of database: 122,413,413
effective HSP length: 47
effective length of database: 92,505,292
effective search space used: 1665095256
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)