TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF12e06.yg.2.1
(561 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK208073.1|CK208073 FGAS019754 Triticum aestivum FGAS: L... 146 1e-059
gb|CV769322.1|CV769322 FGAS063713 Triticum aestivum FGAS: L... 101 5e-039
gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aes... 83 3e-035
gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: L... 91 5e-034
gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: L... 91 1e-033
gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: L... 66 8e-031
gb|BQ752608.1|BQ752608 WHE4117_A09_A17ZS Wheat salt-stresse... 51 2e-026
gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA... 91 2e-025
gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic flor... 66 5e-024
gb|CF133885.1|CF133885 WHE4364_G12_M24ZT Wheat meiotic flor... 109 3e-023
gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anth... 90 4e-023
gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anth... 90 6e-023
gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anth... 90 6e-023
gb|CV771144.1|CV771144 FGAS065537 Triticum aestivum FGAS: L... 50 1e-022
gb|CD894062.1|CD894062 G118.125E16F010828 G118 Triticum aes... 77 2e-022
gb|CA733384.1|CA733384 wlp1c.pk008.m6 wlp1c Triticum aestiv... 59 2e-022
gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA... 86 4e-022
gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: L... 73 8e-021
>gb|CK208073.1|CK208073 FGAS019754 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1052
Score = 146 bits (313), Expect(2) = 1e-059
Identities = 56/107 (52%), Positives = 78/107 (72%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+F SHF +P++ L +V+VLDDD+IVQ+DLS LWNLDMG KV AV+FCG+RLGQL
Sbjct: 154 LSVFSHSHFFIPEIFKDLKKVIVLDDDVIVQRDLSFLWNLDMGDKVNAAVKFCGLRLGQL 333
Query: 183 KPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKD 323
+ + + D SC W+SGLNVI L+KWR+ +T + Q ++K R +
Sbjct: 334 RNLLGEAMYDPQSCAWMSGLNVINLEKWREYNVTENYLQLLEKFRNN 474
Score = 104 bits (221), Expect(2) = 1e-059
Identities = 41/76 (53%), Positives = 54/76 (71%)
Frame = +3 / +1
Query: 321 DSLKSQRLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPW 500
D S R ALP LL+FQ+LVYPL++ SGLG+ YGI I +A+LHYNG MKPW
Sbjct: 475 DDEASLRAAALPISLLSFQNLVYPLDERLTLSGLGYQYGIEEKVIRTSASLHYNGNMKPW 654
Query: 501 LDLGILDYKNYWRKYL 548
L+LGI +Y+ YW+++L
Sbjct: 655 LELGIPNYRKYWKRFL 702
Score = 89.5 bits (189), Expect(2) = 1e-030
Identities = 43/84 (51%), Positives = 51/84 (60%)
Frame = -3 / -1
Query: 271 SLHLSNSMTFRPDNHTHESSSTLWSAI*GFSCPNLTPQNWTAPITLPPISRFHRGDKSFW 92
SLH S MTF PD H H+ S + S S P+L PQN TA TL PISRFH+ ++S
Sbjct: 422 SLHFSKLMTFNPDIHAHDWGSYIASPRRFLSWPSLRPQNLTAAFTLSPISRFHKKERSR* 243
Query: 91 TIKSSSRTTTLFKLGRRSGKRKCE 20
T+ SSS T T FK SG +KCE
Sbjct: 242 TMTSSSNTITFFKSLNISGIKKCE 171
Score = 64.3 bits (134), Expect(2) = 1e-030
Identities = 35/70 (50%), Positives = 40/70 (57%)
Frame = -3 / -1
Query: 547 RYFLQ*FL*SSIPKSSQGFITPL*CRVAAFSISTWLIP*SCPRPDSTHESSKGYTRS*KA 368
R Q FL* IP SSQGFI PL*C A I+ IP P PD + SS+GYTR K
Sbjct: 701 RNLFQYFL*FGIPNSSQGFILPL*CNDAEVRITFSSIPY**PSPDKVNLSSRGYTRFWKE 522
Query: 367 SRPAGSACSR 338
S+ G A +R
Sbjct: 521 SKLIGKAAAR 492
>gb|CV769322.1|CV769322 FGAS063713 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 883
Score = 101 bits (216), Expect(2) = 5e-039
Identities = 38/119 (31%), Positives = 65/119 (54%)
Frame = +3 / +1
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLA 371
+ D ++D D C W G+NV L+ WR T I + +++ + L + LP L+A
Sbjct: 424 VIDRSLDPDECAWAYGMNVFNLEAWRKTNIXDTYHFWLKENLRAGLTLWKFGTLPPALIA 603
Query: 372 FQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
F+ V+ ++ SW GLG+ ++KAA +HYNG KPWLD+ + + +W +++
Sbjct: 604 FRGHVHGIDPSWHMLGLGYQESTDIESVKKAAVVHYNGQCKPWLDIAFKNLQPFWTRHV 780
Score = 79.9 bits (168), Expect(2) = 5e-039
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
IS+ LP+L PSLN+VV LDDD++VQ+DLSPLW +D+ GKV GAV+ C
Sbjct: 202 ISLLNHLRIYLPELFPSLNKVVFLDDDIVVQRDLSPLWEIDLEGKVNGAVETC 360
>gb|CD879801.1|CD879801 AZO4.106G09F011012 AZO4 Triticum aestivum cDNA clone AZO4106G09,
mRNA sequence
Length = 757
Score = 83.1 bits (175), Expect(3) = 3e-035
Identities = 35/70 (50%), Positives = 43/70 (61%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
R LPAGLL F L+ PL+ W GLG+D I IE AA +HYNG MKPWL L I
Sbjct: 472 RTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVNIDDRLIESAAVVHYNGNMKPWLKLAIH 651
Query: 519 DYKNYWRKYL 548
YK+ W +++
Sbjct: 652 RYKSIWERHV 681
Score = 68.0 bits (142), Expect(3) = 3e-035
Identities = 25/53 (47%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F +P +LP+L +VV LDDD++VQKDL+ L+++++ G VIGAV+ C
Sbjct: 124 VSLLNHLRFYIPQILPNLEKVVFLDDDVVVQKDLTQLFSIELHGNVIGAVETC 282
Score = 35.9 bits (72), Expect(3) = 3e-035
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3 / +1
Query: 192 IADHNVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
I +D +C W G+N+ +L WR TSL+
Sbjct: 331 IISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 432
>gb|CK196137.1|CK196137 FGAS004584 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 868
Score = 90.9 bits (192), Expect(3) = 5e-034
Identities = 32/70 (45%), Positives = 50/70 (71%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F + +PL+ SW GLG++ +S D+E+AA +HYNG MKPWL++G+
Sbjct: 403 KLGTLPLGLVTFWNKTFPLDRSWHVLGLGYNPHVSSSDLERAAVIHYNGNMKPWLEIGLP 582
Query: 519 DYKNYWRKYL 548
+++YW +YL
Sbjct: 583 KFRSYWSEYL 612
Score = 52.8 bits (109), Expect(3) = 5e-034
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3 / +1
Query: 66 VVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYI 194
V LD D++V+KD++ LW++DM GKV GAV+ CG Y+
Sbjct: 118 VFLDGDVVVRKDITGLWSIDMKGKVNGAVETCGESFHSFDDYL 246
Score = 39.1 bits (79), Expect(3) = 5e-034
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++CVW G+N+ +L +WR IT ++
Sbjct: 274 NFDPNACVWAFGMNMFDLAEWRRQNITEIY 363
>gb|CK194696.1|CK194696 FGAS003127 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 804
Score = 90.9 bits (192), Expect(3) = 1e-033
Identities = 32/70 (45%), Positives = 50/70 (71%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F + +PL+ SW GLG++ +S D+E+AA +HYNG MKPWL++G+
Sbjct: 475 KLGTLPLGLVTFWNKTFPLDRSWHVLGLGYNPHVSSSDLERAAVIHYNGNMKPWLEIGLP 654
Query: 519 DYKNYWRKYL 548
+++YW +YL
Sbjct: 655 KFRSYWSEYL 684
Score = 51.5 bits (106), Expect(3) = 1e-033
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3 / +1
Query: 72 LDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYI 194
LD D++V+KD++ LW++DM GKV GAV+ CG Y+
Sbjct: 196 LDGDVVVRKDITGLWSIDMKGKVNGAVETCGESFHSFDDYL 318
Score = 39.1 bits (79), Expect(3) = 1e-033
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++CVW G+N+ +L +WR IT ++
Sbjct: 346 NFDPNACVWAFGMNMFDLAEWRRQNITEIY 435
>gb|DR740515.1|DR740515 FGAS000462 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1160
Score = 66.1 bits (138), Expect(4) = 8e-031
Identities = 24/53 (45%), Positives = 39/53 (73%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F +P++ P L++VV LDDD++VQKDLS L+ +++ G V+GAV+ C
Sbjct: 163 LSMLNHLRFYIPEIYPELHKVVFLDDDIVVQKDLSDLFTINLNGNVMGAVETC 321
Score = 50.1 bits (103), Expect(4) = 8e-031
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 453 IEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
I++ A LHYNG +KPWL +G+ YK +W Y+
Sbjct: 622 IKEGAVLHYNGNLKPWLKIGMEKYKGFWDNYV 717
Score = 38.6 bits (78), Expect(4) = 8e-031
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3 / +1
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D D+C W G+NV++L +WR+ +T ++
Sbjct: 388 DPDACGWAFGMNVLDLVEWRNKNVTGIY 471
Score = 34.5 bits (69), Expect(4) = 8e-031
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGH 428
+L +LP GLLAF LV L+ W GLG+
Sbjct: 511 KLGSLPPGLLAFYGLVEALDPKWHVLGLGY 600
>gb|BQ752608.1|BQ752608 WHE4117_A09_A17ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4117_A09_A17, mRNA sequence
Length = 834
Score = 51.0 bits (105), Expect(4) = 2e-026
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3 / +1
Query: 63 VVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
VV LDDD++VQKDLS L+ +++ G V+GAV+ C
Sbjct: 1 VVFLDDDIVVQKDLSDLFTINLNGNVMGAVETC 99
Score = 50.1 bits (103), Expect(4) = 2e-026
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 453 IEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
I++ A LHYNG +KPWL +G+ YK +W Y+
Sbjct: 400 IKEGAVLHYNGNLKPWLKIGMEKYKGFWDNYV 495
Score = 38.6 bits (78), Expect(4) = 2e-026
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3 / +1
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D D+C W G+NV++L +WR+ +T ++
Sbjct: 166 DPDACGWAFGMNVLDLVEWRNKNVTGIY 249
Score = 34.5 bits (69), Expect(4) = 2e-026
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGH 428
+L +LP GLLAF LV L+ W GLG+
Sbjct: 289 KLGSLPPGLLAFYGLVEALDPKWHVLGLGY 378
>gb|BJ215342.1|BJ215342 BJ215342 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh6k21 3', mRNA sequence
Length = 625
Score = 91.3 bits (193), Expect(3) = 2e-025
Identities = 32/70 (45%), Positives = 50/70 (71%)
Frame = +3 / -3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F + +PL+ SW GLG++ +S D+E+AA +HYNG MKPWL++G+
Sbjct: 395 KLGTLPLGLVTFWNKTFPLDRSWHVLGLGYNPHVSSSDVERAAVIHYNGNMKPWLEIGLP 216
Query: 519 DYKNYWRKYL 548
+++YW +YL
Sbjct: 215 KFRSYWSEYL 186
Score = 38.6 bits (78), Expect(3) = 2e-025
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3 / -3
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C+W G+N+ +L +WR IT ++
Sbjct: 524 NFDPNACLWAFGMNIFDLAEWRRQNITEIY 435
Score = 23.5 bits (45), Expect(3) = 2e-025
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3 / -3
Query: 123 DMGGKVIGAVQFCGVRLGQLKPYI 194
DM GKV GAV+ C Y+
Sbjct: 623 DMKGKVNGAVETCXESFHSFDDYL 552
>gb|CF133702.1|CF133702 WHE4362_C07_F14ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4362_C07_F14, mRNA sequence
Length = 747
Score = 66.1 bits (138), Expect(4) = 5e-024
Identities = 24/53 (45%), Positives = 39/53 (73%)
Frame = +3 / +3
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F +P++ P L++VV LDDD++VQKDLS L+ +++ G V+GAV+ C
Sbjct: 243 LSMLNHLRFYIPEIYPELHKVVFLDDDIVVQKDLSDLFTINLNGNVMGAVETC 401
Score = 38.6 bits (78), Expect(4) = 5e-024
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3 / +3
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D D+C W G+NV++L +WR+ +T ++
Sbjct: 468 DPDACGWAFGMNVLDLVEWRNKNVTGIY 551
Score = 34.5 bits (69), Expect(4) = 5e-024
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGH 428
+L +LP GLLAF LV L+ W GLG+
Sbjct: 591 KLGSLPPGLLAFYGLVEALDPKWHVLGLGY 680
Score = 26.7 bits (52), Expect(4) = 5e-024
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 453 IEKAATLHYNGVMKP 497
I++ A LHYNG +KP
Sbjct: 702 IKEGAVLHYNGNLKP 746
>gb|CF133885.1|CF133885 WHE4364_G12_M24ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4364_G12_M24, mRNA sequence
Length = 732
Score = 109 bits (232), Expect = 3e-023
Identities = 40/48 (83%), Positives = 44/48 (91%)
Frame = +3 / -3
Query: 405 WVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
WV+SGLG+DYGIS VDIEKAA LHYNGVMKPWLDL I DYK+YWRKY+
Sbjct: 730 WVQSGLGYDYGISRVDIEKAAALHYNGVMKPWLDLAIHDYKSYWRKYM 587
>gb|CA498138.1|CA498138 WHE3239_C01_F01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3239_C01_F01, mRNA sequence
Length = 710
Score = 90.4 bits (191), Expect(2) = 4e-023
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ + H +I+ AA +HYNG MKPWL++ +
Sbjct: 248 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHAEIDTAAVIHYNGNMKPWLEIAMT 427
Query: 519 DYKNYWRKYL 548
Y+ YW +Y+
Sbjct: 428 KYRPYWTQYI 457
Score = 37.7 bits (76), Expect(2) = 4e-023
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L++W+ IT ++
Sbjct: 119 NFDPNACGWAYGMNIFDLEEWKKNDITGIY 208
>gb|CA498089.1|CA498089 WHE3238_C01_E02ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3238_C01_E02, mRNA sequence
Length = 683
Score = 90.4 bits (191), Expect(2) = 6e-023
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ + H +I+ AA +HYNG MKPWL++ +
Sbjct: 223 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHAEIDTAAVIHYNGNMKPWLEIAMT 402
Query: 519 DYKNYWRKYL 548
Y+ YW +Y+
Sbjct: 403 KYRPYWTQYI 432
Score = 37.3 bits (75), Expect(2) = 6e-023
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L++W+ IT ++
Sbjct: 94 NFDPNACGWAYGMNIFDLEEWKKKDITGIY 183
>gb|CA497997.1|CA497997 WHE3237_C01_E01ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3237_C01_E01, mRNA sequence
Length = 573
Score = 90.4 bits (191), Expect(2) = 6e-023
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ + H +I+ AA +HYNG MKPWL++ +
Sbjct: 229 KLGTLPPGLMTFYKLTHPLDKSWHVLGLGYNPTVEHAEIDTAAVIHYNGNMKPWLEIAMT 408
Query: 519 DYKNYWRKYL 548
Y+ YW +Y+
Sbjct: 409 KYRPYWTQYI 438
Score = 37.3 bits (75), Expect(2) = 6e-023
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3 / +1
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L++W+ IT ++
Sbjct: 100 NFDPNACGWAYGMNIFDLEEWKKKDITGIY 189
>gb|CV771144.1|CV771144 FGAS065537 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 905
Score = 50.1 bits (103), Expect(4) = 1e-022
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3 / +3
Query: 453 IEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
I++ A LHYNG +KPWL +G+ YK +W Y+
Sbjct: 486 IKEGAVLHYNGNLKPWLXIGMEKYKGFWDNYV 581
Score = 38.6 bits (78), Expect(4) = 1e-022
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3 / +3
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D D+C W G+NV++L +WR+ +T ++
Sbjct: 252 DPDACGWAFGMNVLDLVEWRNKNVTGIY 335
Score = 37.7 bits (76), Expect(4) = 1e-022
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +3 / +3
Query: 84 LIVQKDLSPLWNLDMGGKVIGAVQFC 161
++VQKDLS L+ +++ G V+GAV+ C
Sbjct: 108 IVVQKDLSDLFTINLNGNVMGAVETC 185
Score = 34.5 bits (69), Expect(4) = 1e-022
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGH 428
+L +LP GLLAF LV L+ W GLG+
Sbjct: 375 KLGSLPPGLLAFYGLVEALDPKWHVLGLGY 464
>gb|CD894062.1|CD894062 G118.125E16F010828 G118 Triticum aestivum cDNA clone G118125E16,
mRNA sequence
Length = 663
Score = 76.7 bits (161), Expect(3) = 2e-022
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F PL+ SW GLG++ IS +I AA +H+NG MKP LD+G+
Sbjct: 291 KLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPGLDIGMN 470
Query: 519 DYKNYWRKYL 548
++ W KY+
Sbjct: 471 QFRQLWTKYV 500
Score = 40.5 bits (82), Expect(3) = 2e-022
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3 / +3
Query: 90 VQKDLSPLWNLDMGGKVIGAVQFC 161
VQ+DL+ LW +DM GKV GAV+ C
Sbjct: 30 VQRDLTGLWKIDMDGKVNGAVETC 101
Score = 26.7 bits (52), Expect(3) = 2e-022
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3 / +3
Query: 216 DSCVWLSGLNVIELDKWR 269
++C W G+N +L+ WR
Sbjct: 174 NACGWAYGMNFFDLNSWR 227
>gb|CA733384.1|CA733384 wlp1c.pk008.m6 wlp1c Triticum aestivum cDNA clone wlp1c.pk008.m6 5'
end, mRNA sequence
Length = 624
Score = 58.8 bits (122), Expect(3) = 2e-022
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +3 / +3
Query: 6 SIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAV 152
SI LP+ P L RV++LDDD++V+KDL+ LW D+ G ++GAV
Sbjct: 78 SILNYLKIHLPEFFPELLRVILLDDDVLVRKDLAGLWEQDLEGNIMGAV 224
Score = 57.9 bits (120), Expect(3) = 2e-022
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +3 / +3
Query: 186 PYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGL 365
P ++ +D C W G +++LD WR +T + +QK R+ ++ +LP L
Sbjct: 300 PAVSSLGLDGSHCAWSWGATIVDLDAWRGANVTETYQLWLQKNRESGFMLWKMGSLPPAL 479
Query: 366 LAFQDLVYPLEDSWVESGLG 425
+AF V +E W LG
Sbjct: 480 IAFDGRVRAIEPLWHLPDLG 539
Score = 27.2 bits (53), Expect(3) = 2e-022
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 453 IEKAATLHYNGVMKPWL 503
++ +A LH++G KPWL
Sbjct: 564 LQLSAVLHFSGPRKPWL 614
>gb|BJ292063.1|BJ292063 BJ292063 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl26d08 5', mRNA sequence
Length = 650
Score = 85.8 bits (181), Expect(3) = 4e-022
Identities = 28/70 (40%), Positives = 50/70 (71%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L +LPAGL+ F + +PL+ SW GLG++ ++ +I +A+ +HYNG +KPWL++G+
Sbjct: 225 KLGSLPAGLVTFWNRTFPLDRSWHLLGLGYNPNVNEKEIRRASVIHYNGNLKPWLEIGLS 404
Query: 519 DYKNYWRKYL 548
Y+ YW +++
Sbjct: 405 KYRKYWSRHV 434
Score = 33.6 bits (67), Expect(3) = 4e-022
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3 / +3
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N + +C W G+N+ +L +WR IT ++
Sbjct: 96 NFNPHACGWAYGMNMFDLSEWRKQNITDVY 185
Score = 23.1 bits (44), Expect(3) = 4e-022
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3 / +3
Query: 132 GKVIGAVQFCGVRLGQLKPYI 194
GKV GAV+ CG + Y+
Sbjct: 6 GKVNGAVETCGESFHRFDKYL 68
>gb|CV761089.1|CV761089 FGAS055477 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 823
Score = 73.0 bits (153), Expect(3) = 8e-021
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = +3 / +2
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+ F LP + P LN+++ LDDD++VQKDL+ LW +D+ G V GAV+ CG +
Sbjct: 362 LSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTGLWEVDLNGNVNGAVETCGESFHRF 541
Query: 183 KPYI 194
Y+
Sbjct: 542 DKYL 553
Score = 37.3 bits (75), Expect(3) = 8e-021
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
N D ++C W G+N+ +L++W+ IT ++
Sbjct: 581 NFDPNACGWAYGMNIFDLEEWKKKDITGIY 670
Score = 27.6 bits (54), Expect(3) = 8e-021
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3 / +1
Query: 354 PAGLLAFQDLVYPLEDSW 407
PA L+ F L +PL+ SW
Sbjct: 724 PASLMTFYKLTHPLDKSW 777
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 561,371,080
Number of Sequences: 636343
Number of extensions: 8700847
Number of successful extensions: 103019
Number of sequences better than 1.0e-020: 28
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 11969359318
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)