TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635646.2.1
(573 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG608342.1|BG608342 WHE2498_C04_F08ZS Triticum monococcu... 145 4e-034
gb|CD490390.1|CD490390 WHE2498_C04_F08ZT Triticum monococcu... 145 4e-034
gb|CN011125.1|CN011125 WHE3880_C07_E14ZS Wheat Fusarium gra... 145 4e-034
gb|BQ839480.1|BQ839480 WHE4166_F02_L04ZS Wheat CS whole pla... 127 7e-029
>gb|BG608342.1|BG608342 WHE2498_C04_F08ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2498_C04_F08,
mRNA sequence
Length = 568
Score = 145 bits (311), Expect = 4e-034
Identities = 58/89 (65%), Positives = 69/89 (77%)
Frame = +2 / +2
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDWRAL AAT A G +FA+GAA+VEGSAIRR+HHALLE+HV+
Sbjct: 206 GILPKIDWRALFAATSAAGFPELLAAEQPPEAELFAEGAAEVEGSAIRRLHHALLEIHVE 385
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPD+ R FPI KG+PNM+LHEDEV
Sbjct: 386 EGTLVCPDSGRSFPILKGVPNMLLHEDEV 472
Score = 120 bits (256), Expect = 2e-026
Identities = 56/92 (60%), Positives = 61/92 (66%)
Frame = -1 / -2
Query: 276 QNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIX 97
Q +TSSSW +LG P MGK+R +SGQTR PS T SRSAWW RR+ALPSTSAAPSAK
Sbjct: 480 QCRTSSSWRSILGTPFRMGKERPLSGQTRVPSSTWISRSAWWRRRIALPSTSAAPSAKSS 301
Query: 96 XXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
P A VAA SARQSILGR P
Sbjct: 300 ASGGCSAARSSGNPAALVAAKSARQSILGRIP 205
>gb|CD490390.1|CD490390 WHE2498_C04_F08ZT Triticum monococcum DV92 early reproductive apex
cDNA library Triticum monococcum cDNA clone
WHE2498_C04_F08, mRNA sequence
Length = 697
Score = 145 bits (311), Expect = 4e-034
Identities = 58/89 (65%), Positives = 69/89 (77%)
Frame = +2 / -3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDWRAL AAT A G +FA+GAA+VEGSAIRR+HHALLE+HV+
Sbjct: 467 GILPKIDWRALFAATSAAGFPELLAAEQPPEAELFAEGAAEVEGSAIRRLHHALLEIHVE 288
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPD+ R FPI KG+PNM+LHEDEV
Sbjct: 287 EGTLVCPDSGRSFPILKGVPNMLLHEDEV 201
Score = 120 bits (256), Expect = 2e-026
Identities = 56/92 (60%), Positives = 61/92 (66%)
Frame = -1 / +1
Query: 276 QNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIX 97
Q +TSSSW +LG P MGK+R +SGQTR PS T SRSAWW RR+ALPSTSAAPSAK
Sbjct: 193 QCRTSSSWRSILGTPFRMGKERPLSGQTRVPSSTWISRSAWWRRRIALPSTSAAPSAKSS 372
Query: 96 XXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
P A VAA SARQSILGR P
Sbjct: 373 ASGGCSAARSSGNPAALVAAKSARQSILGRIP 468
>gb|CN011125.1|CN011125 WHE3880_C07_E14ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3880_C07_E14,
mRNA sequence
Length = 468
Score = 145 bits (311), Expect = 4e-034
Identities = 58/89 (65%), Positives = 69/89 (77%)
Frame = +2 / +2
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDWRAL AAT A G +FA+GAA+VEGSAIRR+HHALLE+HV+
Sbjct: 140 GILPKIDWRALFAATSAAGFPELLAAEQPPEAELFAEGAAEVEGSAIRRLHHALLEIHVE 319
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPD+ R FPI KG+PNM+LHEDEV
Sbjct: 320 EGTLVCPDSGRSFPILKGVPNMLLHEDEV 406
Score = 116 bits (249), Expect = 1e-025
Identities = 55/92 (59%), Positives = 60/92 (65%)
Frame = -1 / -1
Query: 276 QNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIX 97
Q +TSSSW +LG P MGK+R +SGQTR PS T SRSAWW RR+ALPSTSAAPSAK
Sbjct: 414 QCRTSSSWRSILGTPFRMGKERPLSGQTRVPSSTWISRSAWWRRRIALPSTSAAPSAKSS 235
Query: 96 XXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
P A VAA SA QSILGR P
Sbjct: 234 ASGGCSAARSSGNPAALVAAKSALQSILGRIP 139
>gb|BQ839480.1|BQ839480 WHE4166_F02_L04ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4166_F02_L04, mRNA sequence
Length = 492
Score = 127 bits (273), Expect = 7e-029
Identities = 52/80 (65%), Positives = 60/80 (75%)
Frame = +2 / +1
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDWRAL AAT A G +FA+GAADVEGSAIRR+HHALLE+HVQ
Sbjct: 241 GILPKIDWRALFAATSAAGFPELLAAEQPPEAELFAEGAADVEGSAIRRLHHALLEIHVQ 420
Query: 182 EGSLVCPDTSRCFPINKGIP 241
EG+LVCPD+ R FPI KG+P
Sbjct: 421 EGTLVCPDSGRSFPILKGVP 480
Score = 111 bits (237), Expect = 7e-024
Identities = 50/80 (62%), Positives = 53/80 (66%)
Frame = -1 / -2
Query: 240 GMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXX 61
G P MGK+R +SGQTR PSWT SRSAWW RR+ALPSTSAAPSAK
Sbjct: 479 GTPFRMGKERPLSGQTRVPSWTWISRSAWWRRRIALPSTSAAPSAKSSASGGCSAARSSG 300
Query: 60 RPTARVAATSARQSILGRRP 1
P A VAA SARQSILGR P
Sbjct: 299 NPAALVAAKSARQSILGRIP 240
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 402,708,592
Number of Sequences: 636343
Number of extensions: 5939225
Number of successful extensions: 85298
Number of sequences better than 1.0e-020: 4
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12326653626
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)