TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802552.2.1
(252 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE499236.1|BE499236 WHE0972_G03_M06ZS Wheat pre-anthesis... 133 6e-031
gb|BQ789476.1|BQ789476 WHE4161_G12_N23ZS Wheat CS whole pla... 133 6e-031
gb|AL815693.1|AL815693 AL815693 j:223 Triticum aestivum cDN... 133 6e-031
gb|AY286093.1| Triticum aestivum chalcone synthase (CHS) ge... 133 6e-031
gb|AY286095.1| Triticum aestivum cultivar Chinese Spring ch... 133 6e-031
gb|AY286096.1| Triticum aestivum chalcone synthase gene, co... 133 6e-031
gb|AY286097.1| Triticum aestivum chalcone synthase (CHS) mR... 133 6e-031
gb|CK207880.1|CK207880 FGAS019552 Triticum aestivum FGAS: L... 132 8e-031
gb|AY286098.1| Triticum aestivum chalcone synthase (CHS1) m... 131 2e-030
gb|CV765655.1|CV765655 FGAS060042 Triticum aestivum FGAS: L... 122 2e-029
dbj|AB187025.1| Triticum aestivum CHS gene for chalcone syn... 126 5e-029
gb|CA687970.1|CA687970 wlm96.pk040.e5 wlm96 Triticum aestiv... 122 1e-027
gb|AF142566.1|AF142566 Triticum aestivum chalcone synthase ... 120 4e-027
gb|BQ620656.1|BQ620656 TaLr1135H07R TaLr1 Triticum aestivum... 116 7e-026
gb|CK211284.1|CK211284 FGAS023119 Triticum aestivum FGAS: L... 115 1e-025
gb|BJ245733.1|BJ245733 BJ245733 Y. Ogihara unpublished cDNA... 112 7e-025
gb|CD903041.1|CD903041 G356.108O23F010918 G356 Triticum aes... 112 7e-025
gb|DR740814.1|DR740814 FGAS000747 Triticum aestivum FGAS: L... 95 2e-024
gb|CV779545.1|CV779545 FGAS073954 Triticum aestivum FGAS: L... 111 2e-024
gb|DR738384.1|DR738384 FGAS083601 Triticum aestivum FGAS: L... 84 2e-022
>gb|BE499236.1|BE499236 WHE0972_G03_M06ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0972_G03_M06, mRNA sequence
Length = 585
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 333 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 512
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 513 AAVIVGADPDVSVERPLFQL 572
>gb|BQ789476.1|BQ789476 WHE4161_G12_N23ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4161_G12_N23, mRNA sequence
Length = 813
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 30 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 209
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 210 AAVIIGADPDVSVERPLFQL 269
>gb|AL815693.1|AL815693 AL815693 j:223 Triticum aestivum cDNA clone H07_j223_plate_8, mRNA
sequence
Length = 519
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 108 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 287
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 288 AAVIVGADPDVSVERPLFQL 347
>gb|AY286093.1| Triticum aestivum chalcone synthase (CHS) gene, complete cds
Length = 1394
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 696 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 875
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 876 AAVIIGADPDESIERPLFQL 935
>gb|AY286095.1| Triticum aestivum cultivar Chinese Spring chalcone synthase (CHS)
gene, complete cds
Length = 1279
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 581 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 760
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 761 AAVIIGADPDVSVERPLFQL 820
>gb|AY286096.1| Triticum aestivum chalcone synthase gene, complete cds
Length = 1283
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 585 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 764
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 765 AAVIIGADPDESIERPLFQL 824
>gb|AY286097.1| Triticum aestivum chalcone synthase (CHS) mRNA, complete cds
Length = 1185
Score = 133 bits (284), Expect = 6e-031
Identities = 59/80 (73%), Positives = 60/80 (75%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 487 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 666
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 667 AAVIIGADPDESIERPLFQL 726
>gb|CK207880.1|CK207880 FGAS019552 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1142
Score = 132 bits (283), Expect = 8e-031
Identities = 60/80 (75%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 583 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 762
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 763 XAVIIGADPDVSVERPLFQL 822
>gb|AY286098.1| Triticum aestivum chalcone synthase (CHS1) mRNA, complete cds
Length = 1185
Score = 131 bits (280), Expect = 2e-030
Identities = 58/80 (72%), Positives = 59/80 (73%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDL ENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 487 YQQGCFAGGTVLRLAKDLVENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGA 666
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 667 AAVIIGADPDESIERPLFQL 726
>gb|CV765655.1|CV765655 FGAS060042 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 815
Score = 122 bits (261), Expect(2) = 2e-029
Identities = 52/56 (92%), Positives = 53/56 (94%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 402 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALF 569
Score = 24.0 bits (46), Expect(2) = 2e-029
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 164 WARRCSATAR 193
WARR SATAR
Sbjct: 553 WARRSSATAR 582
>dbj|AB187025.1| Triticum aestivum CHS gene for chalcone synthase, partial cds
Length = 434
Score = 126 bits (270), Expect = 5e-029
Identities = 56/80 (70%), Positives = 59/80 (73%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGP ++ LDS+VGQALF
Sbjct: 109 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPCDTQLDSMVGQALFGDGA 288
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 289 AAVVVGADPDVLVERPLFQL 348
>gb|CA687970.1|CA687970 wlm96.pk040.e5 wlm96 Triticum aestivum cDNA clone wlm96.pk040.e5 5'
end, mRNA sequence
Length = 511
Score = 122 bits (260), Expect = 1e-027
Identities = 55/84 (65%), Positives = 60/84 (71%)
Frame = +1 / +2
Query: 1 AASTYQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
A+ +QG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGP ++ LDS+VGQALF
Sbjct: 122 ASCCTKQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPCDTQLDSMVGQALF 301
Query: 181 XXXXXXXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 302 GDGAAAVVVGADPDVLVERPLFQL 373
>gb|AF142566.1|AF142566 Triticum aestivum chalcone synthase gene, partial cds
Length = 669
Score = 120 bits (256), Expect = 4e-027
Identities = 52/80 (65%), Positives = 57/80 (71%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG F G TVLR+AKD+AENNRGARVLVVCSEIT + FRGPS+SHLDSLVG ALF
Sbjct: 10 YQQGCFGGATVLRMAKDIAENNRGARVLVVCSEITAMAFRGPSKSHLDSLVGHALFGDGA 189
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+PLFQL
Sbjct: 190 AAAIIGADPDEPFEKPLFQL 249
>gb|BQ620656.1|BQ620656 TaLr1135H07R TaLr1 Triticum aestivum cDNA clone TaLr1135H07R, mRNA
sequence
Length = 457
Score = 116 bits (247), Expect = 7e-026
Identities = 53/80 (66%), Positives = 55/80 (68%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
Y QG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP E HLDS+V QALF
Sbjct: 168 YHQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITVVTFRGPHEFHLDSIVDQALFCDGA 347
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ER L QL
Sbjct: 348 VAVIIGADPDVSVERALLQL 407
>gb|CK211284.1|CK211284 FGAS023119 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1095
Score = 115 bits (245), Expect = 1e-025
Identities = 53/79 (67%), Positives = 54/79 (68%)
Frame = +1 / -2
Query: 16 QQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXXX 195
QQG FAGGTVLR+AKDL ENN GARVLV CSEIT VT R P ESHLDSLVGQALF
Sbjct: 935 QQGCFAGGTVLRLAKDLVENNPGARVLVFCSEITPVTSRAPHESHLDSLVGQALFRDGAA 756
Query: 196 XXXXXXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 755 AVIVGTDPDMSVERPLFQL 699
>gb|BJ245733.1|BJ245733 BJ245733 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf1o20 5', mRNA sequence
Length = 697
Score = 112 bits (240), Expect = 7e-025
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +1 / +3
Query: 28 FAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHLDSLVGQALF
Sbjct: 6 FAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALF 158
>gb|CD903041.1|CD903041 G356.108O23F010918 G356 Triticum aestivum cDNA clone G356108O23,
mRNA sequence
Length = 650
Score = 112 bits (240), Expect = 7e-025
Identities = 51/75 (68%), Positives = 53/75 (70%)
Frame = +1 / +3
Query: 28 FAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXXXXXXX 207
FAGGT LR+ +DLAENNRGARVLVVCSEIT VTF GP ESHLDSLVGQALF
Sbjct: 33 FAGGTGLRLPRDLAENNRGARVLVVCSEITAVTFCGPHESHLDSLVGQALFGDGAAAVIV 212
Query: 208 XXXXXXXXERPLFQL 252
ERPLFQL
Sbjct: 213 GADPDESVERPLFQL 257
>gb|DR740814.1|DR740814 FGAS000747 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1118
Score = 95.0 bits (201), Expect(2) = 2e-024
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGP 138
YQQG FAGGTVLRVAKDLAENNRGARVLVVCSEIT VTFRGP
Sbjct: 564 YQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGP 689
Score = 91.8 bits (194), Expect(2) = 7e-021
Identities = 37/42 (88%), Positives = 37/42 (88%)
Frame = -2 / -2
Query: 137 GPRNVTXVISEHTTSTRAPRLFSARSLATRSTVPPANHPCWY 12
GPR VT VISE TTSTRAPRLFSARSLATRSTVPPA PCWY
Sbjct: 688 GPRKVTAVISEQTTSTRAPRLFSARSLATRSTVPPAKQPCWY 563
Score = 35.9 bits (72), Expect(2) = 2e-024
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1 / +1
Query: 127 FRGPSESHLDSLVGQALFXXXXXXXXXXXXXXXXXERPLFQL 252
F P ++ L S+VGQALF ERPLFQL
Sbjct: 679 FVAPCDTQLXSMVGQALFGDGAAAVVVGADPDVLVERPLFQL 804
Score = 27.6 bits (54), Expect(2) = 7e-021
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1 / -3
Query: 252 ELEERALDAVVRVGAHDHGRRAVAEQRLAH 163
+LE+ + V V AHDHG +A++ LA+
Sbjct: 804 KLEQWPFNKHVGVSAHDHGSCPIAKECLAN 715
>gb|CV779545.1|CV779545 FGAS073954 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 844
Score = 111 bits (236), Expect = 2e-024
Identities = 47/53 (88%), Positives = 49/53 (92%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQ 171
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT VTFRGP ESHL SLVG+
Sbjct: 513 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLHSLVGR 671
>gb|DR738384.1|DR738384 FGAS083601 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1037
Score = 83.5 bits (176), Expect(2) = 2e-022
Identities = 36/43 (83%), Positives = 37/43 (86%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPS 141
YQQG FAGGTVLR+AKDLAENNRGARVLVVCSEIT GPS
Sbjct: 666 YQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAGDLPGPS 794
Score = 40.5 bits (82), Expect(2) = 2e-022
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1 / +1
Query: 124 TFRGPSESHLDSLVGQA 174
TFRGP ESHLDSLVGQA
Sbjct: 778 TFRGPHESHLDSLVGQA 828
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 158,657,208
Number of Sequences: 636343
Number of extensions: 2191473
Number of successful extensions: 377364
Number of sequences better than 1.0e-020: 26
length of database: 122,413,413
effective HSP length: 49
effective length of database: 91,232,606
effective search space used: 3101908604
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)