TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ249930.1|BJ249930 BJ249930 Y. Ogihara unpublished cDNA... 120 2e-026
gb|BJ251252.1|BJ251252 BJ251252 Y. Ogihara unpublished cDNA... 119 3e-026
gb|BJ251714.1|BJ251714 BJ251714 Y. Ogihara unpublished cDNA... 119 3e-026
gb|BJ285920.1|BJ285920 BJ285920 Y. Ogihara unpublished cDNA... 119 3e-026
gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA... 118 6e-026
gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA... 118 6e-026
gb|BJ244140.1|BJ244140 BJ244140 Y. Ogihara unpublished cDNA... 113 2e-024
emb|AX660733.1| Sequence 1090 from Patent WO03000906 110 2e-023
gb|BJ254306.1|BJ254306 BJ254306 Y. Ogihara unpublished cDNA... 107 8e-023
gb|BJ254574.1|BJ254574 BJ254574 Y. Ogihara unpublished cDNA... 107 8e-023
gb|CD878081.1|CD878081 AZO4.101N22R011122 AZO4 Triticum aes... 90 7e-021
>gb|BJ249930.1|BJ249930 BJ249930 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14g15 3', mRNA sequence
Length = 712
Score = 120 bits (256), Expect = 2e-026
Identities = 47/95 (49%), Positives = 60/95 (63%)
Frame = +2 / -3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ +YLGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 533 IPSYLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFGLKTLYYAEFGNRGPGAGTSKR 354
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
GF V+G A QFT G F+ GA W+ TG P
Sbjct: 353 VTWPGFRVIGNKEAEQFTAGPFIDGATWLKFTGMP 249
>gb|BJ251252.1|BJ251252 BJ251252 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19e14 3', mRNA sequence
Length = 613
Score = 119 bits (254), Expect = 3e-026
Identities = 47/95 (49%), Positives = 60/95 (63%)
Frame = +2 / -2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ +YLGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 501 IPSYLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFALKTLYYAEFGNRGPGAGTSKR 322
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
GF V+G A QFT G F+ GA W+ TG P
Sbjct: 321 VTWPGFRVIGNKEAEQFTAGPFIDGATWLKFTGMP 217
>gb|BJ251714.1|BJ251714 BJ251714 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf20e17 3', mRNA sequence
Length = 632
Score = 119 bits (254), Expect = 3e-026
Identities = 47/95 (49%), Positives = 60/95 (63%)
Frame = +2 / -1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ +YLGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 512 IPSYLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFALKTLYYAEFGNRGPGAGTSKR 333
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
GF V+G A QFT G F+ GA W+ TG P
Sbjct: 332 VTWPGFRVIGNKEAEQFTAGPFIDGATWLKFTGMP 228
>gb|BJ285920.1|BJ285920 BJ285920 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr13h13 3', mRNA sequence
Length = 697
Score = 119 bits (254), Expect = 3e-026
Identities = 47/95 (49%), Positives = 60/95 (63%)
Frame = +2 / -2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ +YLGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 540 IPSYLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFALKTLYYAEFGNRGPGAGTSKR 361
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
GF V+G A QFT G F+ GA W+ TG P
Sbjct: 360 VTWPGFRVIGNKEAEQFTAGPFIDGATWLKFTGMP 256
>gb|BJ250225.1|BJ250225 BJ250225 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf9k15 3', mRNA sequence
Length = 701
Score = 118 bits (252), Expect = 6e-026
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +2 / -2
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ ++LGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 544 IPSFLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFGLKTLYYAEFGNRGPGAGTSKR 365
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
GF V+G A QFT G F+ GA W+ TG P
Sbjct: 364 VTWPGFRVIGNKEAEQFTAGPFIDGATWLKFTGMP 260
>gb|BJ251281.1|BJ251281 BJ251281 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19g21 3', mRNA sequence
Length = 576
Score = 118 bits (252), Expect = 6e-026
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +2 / -3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ ++LGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 514 IPSFLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFGLKTLYYAEFGNHGPGAGTSKR 335
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
GF V+G A QFT G F+ GA W+ TG P
Sbjct: 334 VTWPGFRVIGNKEAEQFTAGPFIDGATWLKFTGMP 230
>gb|BJ244140.1|BJ244140 BJ244140 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf14g15 5', mRNA sequence
Length = 591
Score = 113 bits (241), Expect = 2e-024
Identities = 44/88 (50%), Positives = 56/88 (63%)
Frame = +2 / +3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
+ +YLGRPWKEF+R V+MES+I F+ +GYMPW G L T ++ EF N G GA + R
Sbjct: 327 IPSYLGRPWKEFSRLVIMESMIADFIKPEGYMPWNGDFGLKTLYYAEFGNRGPGAGTSKR 506
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADW 331
GF V+G A QFT G F+ GA W
Sbjct: 507 VTWPGFRVIGNKEAEQFTAGPFIDGATW 590
>emb|AX660733.1| Sequence 1090 from Patent WO03000906
Length = 712
Score = 110 bits (234), Expect = 2e-023
Identities = 43/95 (45%), Positives = 58/95 (61%)
Frame = +2 / +1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V +YLGRPWKE++RTVVMES I + +G+ W G L T ++ E+ N G GA + R
Sbjct: 154 VPSYLGRPWKEYSRTVVMESTIGDLIKPEGWSEWMGDLGLKTLYYAEYANTGPGAGTSKR 333
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
G+ V+G+ A QFT G F+ G W+ TGTP
Sbjct: 334 VTWPGYRVIGQAEATQFTAGVFIDGMSWLKNTGTP 438
>gb|BJ254306.1|BJ254306 BJ254306 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5d01 3', mRNA sequence
Length = 516
Score = 107 bits (229), Expect = 8e-023
Identities = 42/95 (44%), Positives = 57/95 (60%)
Frame = +2 / -1
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V +YLGRPWKE++RTV+MES I + +G+ W G L T + E+ N G GA + R
Sbjct: 501 VPSYLGRPWKEYSRTVIMESTIGDLIKPEGWSEWMGDLGLKTLXYAEYANTGPGAGTSKR 322
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
G+ V+G+ A QFT G F+ G W+ TGTP
Sbjct: 321 VTWPGYRVIGQAEATQFTAGVFIDGMSWLKNTGTP 217
>gb|BJ254574.1|BJ254574 BJ254574 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf6d01 3', mRNA sequence
Length = 644
Score = 107 bits (229), Expect = 8e-023
Identities = 42/95 (44%), Positives = 57/95 (60%)
Frame = +2 / -3
Query: 68 VNTYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGR 247
V +YLGRPWKE++RTV+MES I + +G+ W G L T + E+ N G GA + R
Sbjct: 492 VPSYLGRPWKEYSRTVIMESTIGDLIKPEGWSEWMGDLGLKTLXYAEYANTGPGAGTSKR 313
Query: 248 KEMQGFHVMGKDRALQFTVGHFLHGADWIPETGTP 352
G+ V+G+ A QFT G F+ G W+ TGTP
Sbjct: 312 VTWPGYRVIGQAEATQFTAGVFIDGMSWLKNTGTP 208
>gb|CD878081.1|CD878081 AZO4.101N22R011122 AZO4 Triticum aestivum cDNA clone AZO4101N22,
mRNA sequence
Length = 621
Score = 90.4 bits (191), Expect(2) = 7e-021
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = +2 / -1
Query: 74 TYLGRPWKEFARTVVMESVIDGFVHRQGYMPWEGKDNLGTAFFGEFRNGGDGANVTGRKE 253
T+LGRPWK ++RTVVMES I G V G+MPW G L T ++ E+ N G GA+ R
Sbjct: 579 TFLGRPWKNYSRTVVMESYIGGLVDATGWMPWSGDFALDTLYYAEYNNSGPGADTGRRVS 400
Query: 254 MQGFHVMG 277
G+HV+G
Sbjct: 399 WPGYHVLG 376
Score = 30.4 bits (60), Expect(2) = 7e-021
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2 / -1
Query: 296 FTVGHFLHGADWIPETGTP 352
FTV + + G +W+P+TG P
Sbjct: 354 FTVDNMVLGGNWLPQTGVP 298
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 462,282,231
Number of Sequences: 636343
Number of extensions: 7469545
Number of successful extensions: 208904
Number of sequences better than 1.0e-020: 17
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12237330049
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)