TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV066458.1|CV066458 WNEL4b5 Wheat EST endosperm library ... 164 1e-039
gb|BF473884.1|BF473884 WHE0932_D09_H18ZS Wheat 5-15 DAP spi... 160 2e-038
>gb|CV066458.1|CV066458 WNEL4b5 Wheat EST endosperm library Triticum aestivum cDNA clone
WNEL4b5 5' similar to Oryza sativa, mRNA sequence
Length = 546
Score = 164 bits (352), Expect = 1e-039
Identities = 64/117 (54%), Positives = 83/117 (70%)
Frame = +3 / +2
Query: 3 VVNDPNLKWYESSWELLGNEYFMHASGSLYALSSEVVEALATAKSDSLRMFDYEDVTIGA 182
V DP LKWYE LLG+EYF+HA G +YALS++VV +L +++S RMF+ EDVTIG+
Sbjct: 29 VFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFNNEDVTIGS 208
Query: 183 WMLAMNVKHEDNRAMCDSVCTPTSIAVWDSKKCSGTCNVADKIKQLHNTTVCSKSPT 353
WMLAMNV HE+ A+C+ CT +SIAVWD KCSG C+ K+ +LH C+ PT
Sbjct: 209 WMLAMNVNHENTHALCEPECTASSIAVWDIPKCSGLCHPEVKMLELHQRKECTGGPT 379
>gb|BF473884.1|BF473884 WHE0932_D09_H18ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0932_D09_H18, mRNA sequence
Length = 651
Score = 160 bits (343), Expect = 2e-038
Identities = 63/117 (53%), Positives = 82/117 (70%)
Frame = +3 / +3
Query: 3 VVNDPNLKWYESSWELLGNEYFMHASGSLYALSSEVVEALATAKSDSLRMFDYEDVTIGA 182
V DP LKWYE LLG+EYF+HA G +YALS++VV +L +++S RMF+ EDVTIG+
Sbjct: 72 VFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVAVRNNSFRMFNNEDVTIGS 251
Query: 183 WMLAMNVKHEDNRAMCDSVCTPTSIAVWDSKKCSGTCNVADKIKQLHNTTVCSKSPT 353
WMLAMNV HE+ A+ + CT +SIAVWD KCSG C+ K+ +LH C+ PT
Sbjct: 252 WMLAMNVNHENTHALTEPECTASSIAVWDIPKCSGLCHPEVKMLELHQRKECTGGPT 422
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 740,599,581
Number of Sequences: 636343
Number of extensions: 10616572
Number of successful extensions: 84002
Number of sequences better than 1.0e-020: 2
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 16673199992
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)