TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ207394.1|BJ207394 BJ207394 Y. Ogihara unpublished cDNA... 150 2e-035
gb|CK214574.1|CK214574 FGAS026502 Triticum aestivum FGAS: L... 150 2e-035
gb|CK214575.1|CK214575 FGAS026503 Triticum aestivum FGAS: L... 150 2e-035
gb|CN012436.1|CN012436 WHE3896_F09_K18ZS Wheat Fusarium gra... 150 2e-035
gb|BF474214.1|BF474214 WHE0841_D12_G23ZS Wheat vernalized c... 148 7e-035
gb|BQ838847.1|BQ838847 WHE3593_D05_H09ZS Wheat developing g... 148 7e-035
gb|CD898645.1|CD898645 G174.109K13F010824 G174 Triticum aes... 148 7e-035
gb|AJ612828.1|AJ612828 AJ612828 Triticum turgidum subsp. du... 148 7e-035
gb|CV766971.1|CV766971 FGAS061358 Triticum aestivum FGAS: L... 148 7e-035
emb|AX406849.1| Sequence 10 from Patent WO0222821 148 7e-035
gb|BJ310404.1|BJ310404 BJ310404 Y. Ogihara unpublished cDNA... 147 1e-034
gb|CD890425.1|CD890425 G118.114J21F010717 G118 Triticum aes... 146 2e-034
gb|CK153563.1|CK153563 FGAS032195 Triticum aestivum FGAS: T... 144 7e-034
gb|CK214484.1|CK214484 FGAS026409 Triticum aestivum FGAS: L... 143 2e-033
gb|AL808362.1|AL808362 AL808362 a:22 Triticum aestivum cDNA... 143 2e-033
emb|AX406854.1| Sequence 15 from Patent WO0222821 139 3e-032
gb|CA626214.1|CA626214 wl1n.pk0135.g6 wl1n Triticum aestivu... 136 2e-031
gb|CD895503.1|CD895503 G174.100A09F010705 G174 Triticum aes... 111 2e-028
gb|CA725087.1|CA725087 wds3f.pk003.n19 wds3f Triticum aesti... 115 6e-025
gb|BF484849.1|BF484849 WHE2320_D02_H04ZS Wheat pre-anthesis... 111 8e-024
gb|AL829150.1|AL829150 AL829150 q:141 Triticum aestivum cDN... 110 2e-023
gb|BJ214671.1|BJ214671 BJ214671 Y. Ogihara unpublished cDNA... 105 4e-022
>gb|BJ207394.1|BJ207394 BJ207394 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh3i16 5', mRNA sequence
Length = 597
Score = 150 bits (322), Expect = 2e-035
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCY
Sbjct: 124 GGGGGGGGNLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCY 303
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 304 NNWKTKEGGPKCP* 345
>gb|CK214574.1|CK214574 FGAS026502 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1094
Score = 150 bits (322), Expect = 2e-035
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +2 / -1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCY
Sbjct: 500 GGGGGGGGNLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCY 321
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 320 NNWKTKEGGPKCP* 279
>gb|CK214575.1|CK214575 FGAS026503 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1105
Score = 150 bits (322), Expect = 2e-035
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +2 / -3
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCY
Sbjct: 497 GGGGGGGGNLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCY 318
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 317 NNWKTKEGGPKCP* 276
>gb|CN012436.1|CN012436 WHE3896_F09_K18ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3896_F09_K18,
mRNA sequence
Length = 590
Score = 150 bits (322), Expect = 2e-035
Identities = 51/74 (68%), Positives = 57/74 (77%)
Frame = +2 / +3
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCY
Sbjct: 129 GGGGGGGGNLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCY 308
Query: 488 NNWKTKRGGPKCP* 529
NNWKTK GGPKCP*
Sbjct: 309 NNWKTKEGGPKCP* 350
>gb|BF474214.1|BF474214 WHE0841_D12_G23ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0841_D12_G23, mRNA sequence
Length = 427
Score = 148 bits (317), Expect = 7e-035
Identities = 50/73 (68%), Positives = 55/73 (75%)
Frame = +2 / +1
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYN
Sbjct: 70 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYN 249
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 250 NWKTKEGGPKCP* 288
>gb|BQ838847.1|BQ838847 WHE3593_D05_H09ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3593_D05_H09, mRNA sequence
Length = 615
Score = 148 bits (317), Expect = 7e-035
Identities = 50/73 (68%), Positives = 55/73 (75%)
Frame = +2 / +2
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYN
Sbjct: 152 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYN 331
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 332 NWKTKEGGPKCP* 370
>gb|CD898645.1|CD898645 G174.109K13F010824 G174 Triticum aestivum cDNA clone G174109K13,
mRNA sequence
Length = 580
Score = 148 bits (317), Expect = 7e-035
Identities = 50/73 (68%), Positives = 55/73 (75%)
Frame = +2 / +2
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYN
Sbjct: 269 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYN 448
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 449 NWKTKEGGPKCP* 487
>gb|AJ612828.1|AJ612828 AJ612828 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 07666R, mRNA
sequence
Length = 676
Score = 148 bits (317), Expect = 7e-035
Identities = 50/73 (68%), Positives = 55/73 (75%)
Frame = +2 / +2
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYN
Sbjct: 134 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYN 313
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 314 NWKTKEGGPKCP* 352
>gb|CV766971.1|CV766971 FGAS061358 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 873
Score = 148 bits (317), Expect = 7e-035
Identities = 50/73 (68%), Positives = 55/73 (75%)
Frame = +2 / +3
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYN
Sbjct: 222 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYN 401
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 402 NWKTKEGGPKCP* 440
>emb|AX406849.1| Sequence 10 from Patent WO0222821
Length = 594
Score = 148 bits (317), Expect = 7e-035
Identities = 50/73 (68%), Positives = 55/73 (75%)
Frame = +2 / +3
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYN
Sbjct: 126 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYN 305
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 306 NWKTKEGGPKCP* 344
>gb|BJ310404.1|BJ310404 BJ310404 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd7b02 3', mRNA sequence
Length = 515
Score = 147 bits (316), Expect = 1e-034
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / -3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYNNWKT
Sbjct: 414 GGGKLKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKT 235
Query: 503 KRGGPKCP* 529
K GGPKCP*
Sbjct: 234 KEGGPKCP* 208
>gb|CD890425.1|CD890425 G118.114J21F010717 G118 Triticum aestivum cDNA clone G118114J21,
mRNA sequence
Length = 664
Score = 146 bits (314), Expect = 2e-034
Identities = 49/69 (71%), Positives = 54/69 (78%)
Frame = +2 / +1
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYNNWKT
Sbjct: 145 GGGKLKPWECPSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKT 324
Query: 503 KRGGPKCP* 529
K GGPKCP*
Sbjct: 325 KEGGPKCP* 351
>gb|CK153563.1|CK153563 FGAS032195 Triticum aestivum FGAS: TaLt2 Triticum aestivum cDNA,
mRNA sequence
Length = 869
Score = 144 bits (310), Expect = 7e-034
Identities = 48/67 (71%), Positives = 53/67 (79%)
Frame = +2 / -3
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYNNWKTK
Sbjct: 681 GKLKPWECPSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKE 502
Query: 509 GGPKCP* 529
GGPKCP*
Sbjct: 501 GGPKCP* 481
>gb|CK214484.1|CK214484 FGAS026409 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1076
Score = 143 bits (307), Expect = 2e-033
Identities = 48/73 (65%), Positives = 53/73 (72%)
Frame = +2 / -2
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C CC CLCVPPGTYGNK CPCYN
Sbjct: 412 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCNNCCPTCLCVPPGTYGNKGACPCYN 233
Query: 491 NWKTKRGGPKCP* 529
NWKTK GGPKCP*
Sbjct: 232 NWKTKEGGPKCP* 194
>gb|AL808362.1|AL808362 AL808362 a:22 Triticum aestivum cDNA clone G11_a22_plate_15, mRNA
sequence
Length = 468
Score = 143 bits (306), Expect = 2e-033
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +2 / +2
Query: 335 LQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGG 514
L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPGTYGNK CPCYNNWKTK GG
Sbjct: 137 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 316
Query: 515 PKCP* 529
PKCP*
Sbjct: 317 PKCP* 331
>emb|AX406854.1| Sequence 15 from Patent WO0222821
Length = 769
Score = 139 bits (298), Expect = 3e-032
Identities = 47/69 (68%), Positives = 51/69 (73%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L P EC +C RCS T Y+K CL C KCCA CLCVPPG YGNK CPCYNNWKT
Sbjct: 194 GGGNLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKT 373
Query: 503 KRGGPKCP* 529
+ GGPKCP*
Sbjct: 374 REGGPKCP* 400
>gb|CA626214.1|CA626214 wl1n.pk0135.g6 wl1n Triticum aestivum cDNA clone wl1n.pk0135.g6 5'
end, mRNA sequence
Length = 533
Score = 136 bits (292), Expect = 2e-031
Identities = 46/69 (66%), Positives = 50/69 (72%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G G+L P EC +C RCS T Y+K CL C KCCA CLCVPPG YGNK CPCYNNW+
Sbjct: 195 GGGNLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWEN 374
Query: 503 KRGGPKCP* 529
K GGPKCP*
Sbjct: 375 KEGGPKCP* 401
>gb|CD895503.1|CD895503 G174.100A09F010705 G174 Triticum aestivum cDNA clone G174100A09,
mRNA sequence
Length = 578
Score = 111 bits (236), Expect(2) = 2e-028
Identities = 36/43 (83%), Positives = 37/43 (86%)
Frame = +2 / +1
Query: 401 CLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP* 529
CL +C KCCA CLCVPPGTYGNK CPCYNNWKTK GGPKCP*
Sbjct: 229 CLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGGPKCP* 357
Score = 35.4 bits (71), Expect(2) = 2e-028
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2 / +3
Query: 335 LQPHECGGRCAERCSATAYQK 397
L+P EC +C+ RCS T Y+K
Sbjct: 162 LKPWECSSKCSSRCSGTQYKK 224
>gb|CA725087.1|CA725087 wds3f.pk003.n19 wds3f Triticum aestivum cDNA clone wds3f.pk003.n19
5' end, mRNA sequence
Length = 569
Score = 115 bits (245), Expect = 6e-025
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = +2 / +2
Query: 311 GVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYN 490
G G G L+P EC +C+ RCS T Y+K CL +C KCCA CLCVPPG YGNK PCYN
Sbjct: 134 GGAGGGGKLKPWECSSKCSSRCSGTQYKKACLTYCXKCCATCLCVPPGNYGNKGAWPCYN 313
Query: 491 NWK 499
NW+
Sbjct: 314 NWE 322
>gb|BF484849.1|BF484849 WHE2320_D02_H04ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2320_D02_H04, mRNA sequence
Length = 414
Score = 111 bits (237), Expect = 8e-024
Identities = 37/47 (78%), Positives = 39/47 (82%)
Frame = +2 / -3
Query: 389 YQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP* 529
Y+K CL +C KCCA CL VPPGTYGNK CPCYNNWKTK GGPKCP*
Sbjct: 403 YKKACLTYCNKCCATCLWVPPGTYGNKGACPCYNNWKTKEGGPKCP* 263
>gb|AL829150.1|AL829150 AL829150 q:141 Triticum aestivum cDNA clone H02_q141_plate_3, mRNA
sequence
Length = 253
Score = 110 bits (234), Expect = 2e-023
Identities = 39/65 (60%), Positives = 44/65 (67%)
Frame = +2 / +2
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GS EC RC RCSAT+++KPC F+C CC CLCVP GT GNK CPCYNN T+
Sbjct: 59 GSAPLKECPVRCKIRCSATSHKKPCNFYCNYCCKRCLCVPSGTVGNKEECPCYNNMNTQD 238
Query: 509 GGPKC 523
G PKC
Sbjct: 239 GKPKC 253
>gb|BJ214671.1|BJ214671 BJ214671 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh3i16 3', mRNA sequence
Length = 350
Score = 105 bits (225), Expect = 4e-022
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = +2 / -2
Query: 410 FCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP* 529
+C KCCA CLCVPPGTYGNK CPCYNNWKTK GGPKCP*
Sbjct: 349 YCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGGPKCP* 230
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 610,320,729
Number of Sequences: 636343
Number of extensions: 11333267
Number of successful extensions: 204628
Number of sequences better than 1.0e-020: 32
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 14633393610
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)