TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2823202.2.1
(529 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ613122.1|AJ613122 AJ613122 Triticum turgidum subsp. du... 139 2e-032
gb|BE444988.1|BE444988 WHE1130_B07_C14ZS Wheat etiolated se... 139 2e-032
gb|BJ283684.1|BJ283684 BJ283684 Y. Ogihara unpublished cDNA... 139 2e-032
gb|CD874917.1|CD874917 AZO3.103L02R011123 AZO3 Triticum aes... 139 2e-032
gb|BJ264202.1|BJ264202 BJ264202 Y. Ogihara unpublished cDNA... 116 1e-025
gb|BJ259315.1|BJ259315 BJ259315 Y. Ogihara unpublished cDNA... 114 6e-025
gb|BE444298.1|BE444298 WHE1117_E07_I13ZS Wheat etiolated se... 110 2e-023
gb|BE445734.1|BE445734 WHE1453_B10_D19ZS Wheat etiolated se... 110 2e-023
>gb|AJ613122.1|AJ613122 AJ613122 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 08313R, mRNA
sequence
Length = 699
Score = 139 bits (299), Expect = 2e-032
Identities = 59/88 (67%), Positives = 67/88 (76%)
Frame = +3 / +1
Query: 9 AIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAA 188
+IQ+NIT CRS+T TCA+KYA ESA LAC AYEGV+QD TL D+Y+F A
Sbjct: 289 SIQRNITDDWSSEEKQWEACRSKTTTCAEKYAQESAVLACDAYEGVEQDDTLGDEYYFKA 468
Query: 189 LPVVQKRIAQGGVRLAAILNRIFGGNSR 272
LPVVQKR+AQGGVRLAAILNR FGGN R
Sbjct: 469 LPVVQKRLAQGGVRLAAILNRXFGGNGR 552
>gb|BE444988.1|BE444988 WHE1130_B07_C14ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1130_B07_C14,
mRNA sequence
Length = 576
Score = 139 bits (298), Expect = 2e-032
Identities = 59/88 (67%), Positives = 67/88 (76%)
Frame = +3 / +1
Query: 9 AIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAA 188
+IQ+NIT CRS+T TCA+KYA ESA LAC AYEGV+QD TL D+Y+F A
Sbjct: 196 SIQRNITDDWSSEEKQWETCRSKTTTCAEKYAQESALLACDAYEGVEQDDTLGDEYYFKA 375
Query: 189 LPVVQKRIAQGGVRLAAILNRIFGGNSR 272
LPVVQKR+AQGGVRLAAILNRIF GN R
Sbjct: 376 LPVVQKRLAQGGVRLAAILNRIFSGNGR 459
>gb|BJ283684.1|BJ283684 BJ283684 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr17b08 3', mRNA sequence
Length = 694
Score = 139 bits (298), Expect = 2e-032
Identities = 59/88 (67%), Positives = 67/88 (76%)
Frame = +3 / -2
Query: 9 AIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAA 188
+IQ+NIT CRS+T TCA+KYA ESA LAC AYEGV+QD TL D+Y+F A
Sbjct: 507 SIQRNITEDWSSEEKQWEACRSKTTTCAEKYAQESALLACDAYEGVEQDDTLGDEYYFKA 328
Query: 189 LPVVQKRIAQGGVRLAAILNRIFGGNSR 272
LPVVQKR+AQGGVRLAAILNRIF GN R
Sbjct: 327 LPVVQKRLAQGGVRLAAILNRIFSGNGR 244
>gb|CD874917.1|CD874917 AZO3.103L02R011123 AZO3 Triticum aestivum cDNA clone AZO3103L02,
mRNA sequence
Length = 672
Score = 139 bits (298), Expect = 2e-032
Identities = 59/88 (67%), Positives = 67/88 (76%)
Frame = +3 / -2
Query: 9 AIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAA 188
+IQ+NIT CRS+T TCA+KYA ESA LAC AYEGV+QD TL D+Y+F A
Sbjct: 554 SIQRNITDDWSSEEKQWETCRSKTTTCAEKYAQESALLACDAYEGVEQDDTLGDEYYFKA 375
Query: 189 LPVVQKRIAQGGVRLAAILNRIFGGNSR 272
LPVVQKR+AQGGVRLAAILNRIF GN R
Sbjct: 374 LPVVQKRLAQGGVRLAAILNRIFSGNGR 291
>gb|BJ264202.1|BJ264202 BJ264202 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh12g22 3', mRNA sequence
Length = 478
Score = 116 bits (249), Expect = 1e-025
Identities = 50/63 (79%), Positives = 54/63 (85%)
Frame = +3 / -3
Query: 84 TCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAALPVVQKRIAQGGVRLAAILNRIFGG 263
TCADKYA ESA LAC AY+GV QDSTL D+Y+ AALPVV+KRIAQGGVRLAAILNRIF
Sbjct: 446 TCADKYAQESAALACDAYKGVKQDSTLGDEYYSAALPVVEKRIAQGGVRLAAILNRIFSR 267
Query: 264 NSR 272
N R
Sbjct: 266 NGR 258
>gb|BJ259315.1|BJ259315 BJ259315 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh12g22 5', mRNA sequence
Length = 465
Score = 114 bits (244), Expect = 6e-025
Identities = 49/62 (79%), Positives = 53/62 (85%)
Frame = +3 / +3
Query: 87 CADKYAAESAKLACTAYEGVDQDSTLEDDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
CADKYA ESA LAC AY+GV QDSTL D+Y+ AALPVV+KRIAQGGVRLAAILNRIF N
Sbjct: 3 CADKYAQESAALACDAYKGVKQDSTLGDEYYSAALPVVEKRIAQGGVRLAAILNRIFSRN 182
Query: 267 SR 272
R
Sbjct: 183 GR 188
>gb|BE444298.1|BE444298 WHE1117_E07_I13ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_E07_I13,
mRNA sequence
Length = 513
Score = 110 bits (234), Expect = 2e-023
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3 / +2
Query: 84 TCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAALPVVQKRIAQGGVRLAAILNRIFGG 263
TCA+KYA ESA LAC AYEGV++ TL DDY+F ALPVV+KRIAQGGVRLA ILN+IF G
Sbjct: 164 TCAEKYAKESALLACDAYEGVEEGDTLGDDYYFRALPVVEKRIAQGGVRLAVILNQIFSG 343
Query: 264 NS 269
+
Sbjct: 344 KN 349
>gb|BE445734.1|BE445734 WHE1453_B10_D19ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1453_B10_D19,
mRNA sequence
Length = 542
Score = 110 bits (234), Expect = 2e-023
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +3 / +2
Query: 84 TCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAALPVVQKRIAQGGVRLAAILNRIFGG 263
TCA+KYA ESA LAC AYEGV++ TL DDY+F ALPVV+KRIAQGGVRLA ILN+IF G
Sbjct: 164 TCAEKYAKESALLACDAYEGVEEGDTLGDDYYFRALPVVEKRIAQGGVRLAVILNQIFSG 343
Query: 264 NS 269
+
Sbjct: 344 KN 349
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 537,959,696
Number of Sequences: 636343
Number of extensions: 9539556
Number of successful extensions: 413537
Number of sequences better than 1.0e-020: 10
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 10986799971
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)