TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL828067.1|AL828067 AL828067 p:739 Triticum aestivum cDN... 139 2e-032
gb|DR736378.1|DR736378 FGAS081748 Triticum aestivum FGAS: L... 139 2e-032
gb|BM134627.1|BM134627 WHE0451_C01_C01ZS Wheat Fusarium gra... 133 1e-030
gb|BJ314208.1|BJ314208 BJ314208 Y. Ogihara unpublished cDNA... 133 1e-030
gb|CD873874.1|CD873874 AZO3.100O07F010924 AZO3 Triticum aes... 127 1e-028
gb|BQ789105.1|BQ789105 WHE4157_F05_L09ZS Wheat CS whole pla... 126 3e-028
gb|CV775962.1|CV775962 FGAS070366 Triticum aestivum FGAS: L... 126 3e-028
gb|CK210012.1|CK210012 FGAS021803 Triticum aestivum FGAS: L... 118 4e-026
gb|BQ839311.1|BQ839311 WHE4164_F10_K20ZS Wheat CS whole pla... 117 1e-025
gb|BF482856.1|BF482856 WHE2301-2304_L12_L12ZS Wheat pre-ant... 109 2e-023
gb|BG607578.1|BG607578 WHE2480_F09_K18ZS Triticum monococcu... 109 2e-023
gb|CD921678.1|CD921678 G750.001I20F010305 G750 Triticum aes... 109 2e-023
gb|CD939601.1|CD939601 OV.114C11F010312 OV Triticum aestivu... 109 2e-023
gb|CF133670.1|CF133670 WHE4361_G08_N15ZT Wheat meiotic flor... 109 2e-023
gb|CV768700.1|CV768700 FGAS063091 Triticum aestivum FGAS: L... 109 2e-023
gb|CV769268.1|CV769268 FGAS063659 Triticum aestivum FGAS: L... 109 3e-023
gb|CA657977.1|CA657977 wlm0.pk040.a3 wlm0 Triticum aestivum... 105 6e-022
gb|CA643391.1|CA643391 wre1n.pk0065.e4 wre1n Triticum aesti... 104 1e-021
gb|CA693845.1|CA693845 wlmk4.pk0010.e7 wlmk4 Triticum aesti... 101 7e-021
>gb|AL828067.1|AL828067 AL828067 p:739 Triticum aestivum cDNA clone F11_p739_plate_5, mRNA
sequence
Length = 587
Score = 139 bits (299), Expect = 2e-032
Identities = 56/81 (69%), Positives = 62/81 (76%)
Frame = +1 / +2
Query: 340 RPGLPPEKQFLLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKAT 519
RP L PEK+F + L+LSTDAKPRLKWTPELHERF +AV +LGGPDKAT
Sbjct: 233 RPSLSPEKKFFMKGQGGAGGGGDSGLILSTDAKPRLKWTPELHERFADAVKKLGGPDKAT 412
Query: 520 PKTIMRLMGIPGLTLYHLKSH 582
PK IMR+MGIPGLTLYHLKSH
Sbjct: 413 PKAIMRVMGIPGLTLYHLKSH 475
Score = 105 bits (224), Expect(2) = 2e-022
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = -3 / -3
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVER 420
WLLRWYRV+PGIPM+LM+ FGVALSGPPS TAS RSCSSGVH RG ASV+R
Sbjct: 474 WLLRWYRVNPGIPMTLMIAFGVALSGPPSFFTASANRSCSSGVHLSRGFASVDR 313
Score = 21.7 bits (41), Expect(2) = 2e-022
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2 / -2
Query: 330 QVLVMGVELLLMIHLL 283
Q ++M + LLL+IHLL
Sbjct: 220 QPVIMKLLLLLVIHLL 173
>gb|DR736378.1|DR736378 FGAS081748 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1070
Score = 139 bits (299), Expect = 2e-032
Identities = 56/81 (69%), Positives = 62/81 (76%)
Frame = +1 / +3
Query: 340 RPGLPPEKQFLLHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKAT 519
RP L PEK+F + L+LSTDAKPRLKWTPELHERF +AV +LGGPDKAT
Sbjct: 237 RPSLSPEKKFFMKGQGGAGGGGDSGLILSTDAKPRLKWTPELHERFADAVKKLGGPDKAT 416
Query: 520 PKTIMRLMGIPGLTLYHLKSH 582
PK IMR+MGIPGLTLYHLKSH
Sbjct: 417 PKAIMRVMGIPGLTLYHLKSH 479
Score = 105 bits (224), Expect = 4e-022
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = -3 / -2
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVER 420
WLLRWYRV+PGIPM+LM+ FGVALSGPPS TAS RSCSSGVH RG ASV+R
Sbjct: 478 WLLRWYRVNPGIPMTLMIAFGVALSGPPSFFTASANRSCSSGVHLSRGFASVDR 317
>gb|BM134627.1|BM134627 WHE0451_C01_C01ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE0451_C01_C01,
mRNA sequence
Length = 597
Score = 133 bits (286), Expect = 1e-030
Identities = 52/56 (92%), Positives = 56/56 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
L+LSTDAKPRLKWTPELH+RFVEAV+QLGGPDKATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 161 LILSTDAKPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSH 328
Score = 106 bits (226), Expect(2) = 1e-023
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = -3 / -1
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVE 423
WLLR Y VSPG PMSL+MVFGVALSGPPS* TASTKRSCSSGVHF GLASVE
Sbjct: 327 WLLR*YNVSPGTPMSLIMVFGVALSGPPS*FTASTKRSCSSGVHFNLGLASVE 169
Score = 24.0 bits (46), Expect(2) = 1e-023
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -3 / -1
Query: 335 EDRCWLWVWS 306
E + WLW+WS
Sbjct: 93 EAKSWLWLWS 64
>gb|BJ314208.1|BJ314208 BJ314208 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf9k24 5', mRNA sequence
Length = 672
Score = 133 bits (286), Expect = 1e-030
Identities = 52/56 (92%), Positives = 56/56 (100%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
L+LSTDAKPRLKWTPELH+RFVEAV+QLGGPDKATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 283 LILSTDAKPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSH 450
Score = 106 bits (226), Expect(2) = 1e-024
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = -3 / -2
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVE 423
WLLR Y VSPG PMSL+MVFGVALSGPPS* TASTKRSCSSGVHF GLASVE
Sbjct: 449 WLLR*YNVSPGTPMSLIMVFGVALSGPPS*FTASTKRSCSSGVHFNLGLASVE 291
Score = 27.2 bits (53), Expect(2) = 1e-024
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / -1
Query: 336 RGQVLVMGVELLLMIHLLLSAC 271
R Q LV+ +ELLLM+ L S+C
Sbjct: 216 RSQELVVALELLLMMIHLFSSC 151
>gb|CD873874.1|CD873874 AZO3.100O07F010924 AZO3 Triticum aestivum cDNA clone AZO3100O07,
mRNA sequence
Length = 628
Score = 127 bits (272), Expect = 1e-028
Identities = 50/56 (89%), Positives = 55/56 (98%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +KATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 151 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSH 318
>gb|BQ789105.1|BQ789105 WHE4157_F05_L09ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4157_F05_L09, mRNA sequence
Length = 721
Score = 126 bits (269), Expect = 3e-028
Identities = 49/56 (87%), Positives = 53/56 (94%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
L+LSTDAKPRLKWTPELHERF +AV +LGGPDKATPK IMR+MGIPGLTLYHLKSH
Sbjct: 316 LILSTDAKPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSH 483
Score = 109 bits (232), Expect = 3e-023
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = -3 / -3
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVER 420
WLLRWYRVSPGIPM+LM+ FGVALSGPPS TAS KRSCSSGVH RG ASV+R
Sbjct: 482 WLLRWYRVSPGIPMTLMIAFGVALSGPPSFFTASAKRSCSSGVHLSRGFASVDR 321
>gb|CV775962.1|CV775962 FGAS070366 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 829
Score = 126 bits (269), Expect = 3e-028
Identities = 49/56 (87%), Positives = 53/56 (94%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
L+LSTDAKPRLKWTPELHERF +AV +LGGPDKATPK IMR+MGIPGLTLYHLKSH
Sbjct: 431 LILSTDAKPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSH 598
Score = 109 bits (232), Expect = 3e-023
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = -3 / -2
Query: 581 WLLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVER 420
WLLRWYRVSPGIPM+LM+ FGVALSGPPS TAS KRSCSSGVH RG ASV+R
Sbjct: 597 WLLRWYRVSPGIPMTLMIAFGVALSGPPSFFTASAKRSCSSGVHLSRGFASVDR 436
>gb|CK210012.1|CK210012 FGAS021803 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1103
Score = 118 bits (253), Expect = 4e-026
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 421 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 588
>gb|BQ839311.1|BQ839311 WHE4164_F10_K20ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4164_F10_K20, mRNA sequence
Length = 728
Score = 117 bits (250), Expect = 1e-025
Identities = 46/56 (82%), Positives = 52/56 (92%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELH+RFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 257 LVLTTDPKPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 424
>gb|BF482856.1|BF482856 WHE2301-2304_L12_L12ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE2301-2304_L12_L12, mRNA
sequence
Length = 539
Score = 109 bits (233), Expect = 2e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 269 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 436
>gb|BG607578.1|BG607578 WHE2480_F09_K18ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2480_F09_K18,
mRNA sequence
Length = 346
Score = 109 bits (233), Expect = 2e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 146 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 313
>gb|CD921678.1|CD921678 G750.001I20F010305 G750 Triticum aestivum cDNA clone G750001I20,
mRNA sequence
Length = 720
Score = 109 bits (233), Expect = 2e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 252 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 419
>gb|CD939601.1|CD939601 OV.114C11F010312 OV Triticum aestivum cDNA clone OV114C11, mRNA
sequence
Length = 704
Score = 109 bits (233), Expect = 2e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 168 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 335
>gb|CF133670.1|CF133670 WHE4361_G08_N15ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4361_G08_N15, mRNA sequence
Length = 758
Score = 109 bits (233), Expect = 2e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 208 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 375
>gb|CV768700.1|CV768700 FGAS063091 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 109 bits (233), Expect = 2e-023
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 360 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 527
>gb|CV769268.1|CV769268 FGAS063659 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 877
Score = 109 bits (232), Expect = 3e-023
Identities = 42/56 (75%), Positives = 51/56 (91%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VLS D KPRL+WTP+LHERFVEAV +LGGPDKATP++++RLMG+ GLTL HLKSH
Sbjct: 467 VVLSRDPKPRLRWTPDLHERFVEAVTKLGGPDKATPQSVLRLMGMKGLTLEHLKSH 634
>gb|CA657977.1|CA657977 wlm0.pk040.a3 wlm0 Triticum aestivum cDNA clone wlm0.pk040.a3 5'
end, mRNA sequence
Length = 494
Score = 105 bits (223), Expect = 6e-022
Identities = 41/56 (73%), Positives = 49/56 (87%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+ LKSH
Sbjct: 137 LVLTADPKPRLRWTXDLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFXLKSH 304
>gb|CA643391.1|CA643391 wre1n.pk0065.e4 wre1n Triticum aestivum cDNA clone wre1n.pk0065.e4
5' end, mRNA sequence
Length = 574
Score = 104 bits (221), Expect = 1e-021
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLK 576
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLK
Sbjct: 102 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLK 263
>gb|CA693845.1|CA693845 wlmk4.pk0010.e7 wlmk4 Triticum aestivum cDNA clone wlmk4.pk0010.e7
5' end, mRNA sequence
Length = 639
Score = 101 bits (215), Expect = 7e-021
Identities = 39/54 (72%), Positives = 47/54 (87%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLK 576
+VLS D KPRL+WTP+LHERFVEAV +LGGPDKATPK+++RLMG+ G YHLK
Sbjct: 57 VVLSRDPKPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGSPWYHLK 218
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 602,575,823
Number of Sequences: 636343
Number of extensions: 8999968
Number of successful extensions: 130834
Number of sequences better than 1.0e-020: 28
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12594624357
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)