TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol meth... 134 1e-030
gb|CA502025.1|CA502025 WHE4041_F11_K21ZT Wheat meiotic anth... 133 2e-030
gb|CD454537.1|CD454537 WHE2325_G10_M19ZT CS wheat pre-anthe... 133 2e-030
gb|CD929066.1|CD929066 GR45.106O12F010319 GR45 Triticum aes... 133 2e-030
gb|CK202861.1|CK202861 FGAS011387 Triticum aestivum FGAS: L... 133 2e-030
gb|CK202589.1|CK202589 FGAS011114 Triticum aestivum FGAS: L... 115 7e-025
gb|CK151484.1|CK151484 FGAS034051 Triticum aestivum FGAS: T... 97 4e-024
gb|CV779189.1|CV779189 FGAS073598 Triticum aestivum FGAS: L... 111 1e-023
gb|BE585605.1|BE585605 EST#5T7_B05_b5_041 KSU wheat Fusariu... 107 2e-022
>gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) mRNA,
complete cds
Length = 1392
Score = 134 bits (287), Expect = 1e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 755 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 934
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 935 VGRIITRNMVKVLEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPVYFFVVRKPLSE 1114
>gb|CA502025.1|CA502025 WHE4041_F11_K21ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4041_F11_K21, mRNA sequence
Length = 637
Score = 133 bits (286), Expect = 2e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 114 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 293
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 294 VGRIITRNMVKVLEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 473
>gb|CD454537.1|CD454537 WHE2325_G10_M19ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2325_G10_M19, mRNA sequence
Length = 697
Score = 133 bits (286), Expect = 2e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 647 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 468
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 467 VGRIITRNMVKVLEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 288
>gb|CD929066.1|CD929066 GR45.106O12F010319 GR45 Triticum aestivum cDNA clone GR45106O12,
mRNA sequence
Length = 611
Score = 133 bits (286), Expect = 2e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 63 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 242
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 243 VGRIITRNMVKVLEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 422
>gb|CK202861.1|CK202861 FGAS011387 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 849
Score = 133 bits (286), Expect = 2e-030
Identities = 56/120 (46%), Positives = 78/120 (65%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 242 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 421
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
GRI+TR +V LE++ +AP GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 422 VGRIITRNMVKVLEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 601
>gb|CK202589.1|CK202589 FGAS011114 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 874
Score = 115 bits (245), Expect = 7e-025
Identities = 48/105 (45%), Positives = 68/105 (64%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + F+
Sbjct: 242 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTT 421
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGI 320
GRI+TR +V LE++ +AP GS + L A++GL++GG++ I
Sbjct: 422 VGRIITRNMVKVLEYVGLAPEGSQRVSSFLEKAAEGLVEGGKKEI 556
>gb|CK151484.1|CK151484 FGAS034051 Triticum aestivum FGAS: TaLt3 Triticum aestivum cDNA,
mRNA sequence
Length = 869
Score = 96.8 bits (205), Expect(2) = 4e-024
Identities = 40/89 (44%), Positives = 57/89 (64%)
Frame = -1 / -1
Query: 541 KDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIVNTLEFLRIAPAGSMGAYNVLM 362
KDLA+ P PWY +DP FS + F+ GRI+TR +V LE++ +AP GS L
Sbjct: 797 KDLAEDSPLPWYLPLDPSRFSLSSFRLTTVGRIITRNMVKVLEYVGLAPEGSQRVSRFLE 618
Query: 361 SASDGLLKGGREGIFTATFFVLGRKPLKE 275
A++GL++GG++ IFT +F + RKPL E
Sbjct: 617 KAAEGLVEGGKKEIFTPMYFFVVRKPLSE 531
Score = 35.4 bits (71), Expect(2) = 4e-024
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1 / -2
Query: 607 DIXXXRQCVQAXKXXGFEVVFAKDLAQVFPC 515
DI RQC+QA K GFEV + L ++ C
Sbjct: 862 DIRSTRQCLQAVKDAGFEVXGTRILLKILRC 770
>gb|CV779189.1|CV779189 FGAS073598 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 847
Score = 111 bits (236), Expect = 1e-023
Identities = 46/101 (45%), Positives = 66/101 (65%)
Frame = -1 / +1
Query: 577 AXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIVNTLEFLRIA 398
A K GFEV++ KDLA+ P PWY +DP FS + F+ GRI+TR +V LE++ +A
Sbjct: 109 AVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSFRLTTVGRIITRNMVKVLEYVGLA 288
Query: 397 PAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKPLKE 275
P GS + L A++GL++GG++ IFT +F + RKPL E
Sbjct: 289 PEGSQRVSSFLEKAAEGLVEGGKKEIFTPMYFFVVRKPLSE 411
>gb|BE585605.1|BE585605 EST#5T7_B05_b5_041 KSU wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
EST#5T7_B05_b5_041, mRNA sequence
Length = 712
Score = 107 bits (228), Expect = 2e-022
Identities = 45/102 (44%), Positives = 63/102 (61%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ELG+ DI RQC+QA K GFEV++ KDLA+ P PWY +DP FS + ++
Sbjct: 373 EIELGNGLPDIRSTRQCLQAVKDAGFEVIWDKDLAEDSPLPWYLPLDPSRFSLSSYRLTT 552
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGR 329
GRI+TR + LE++ +AP G+ Y+ L A +GL K G+
Sbjct: 553 EGRIITRNMDKVLEYVGLAPEGNQRVYSFLEKAKEGLDKRGQ 678
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 670,541,583
Number of Sequences: 636343
Number of extensions: 12902048
Number of successful extensions: 163885
Number of sequences better than 1.0e-020: 13
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 16141076588
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)