TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorgh... 213 3e-068
gb|BE359241.1|BE359241 DG1_39_H04.g1_A002 Dark Grown 1 (DG1... 149 8e-067
gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-tre... 138 3e-039
gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorgh... 138 3e-039
gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated... 138 3e-039
gb|CN126440.1|CN126440 RHOH1_17_D12.b1_A002 Acid- and alkal... 138 3e-039
gb|CW481051.1|CW481051 fsbb001f240g19f0 Sorghum methylation... 161 1e-038
gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stres... 134 5e-038
gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorgh... 128 7e-037
gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum m... 128 7e-037
gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seed... 128 7e-037
gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/c... 128 7e-037
gb|CD424461.1|CD424461 SA1_6_C12.b1_A002 Salicylic acid-tre... 130 7e-037
gb|CD223588.1|CD223588 CCC1_29_B11.b1_A007 Callus culture/c... 126 3e-036
gb|CN126812.1|CN126812 RHOH1_19_G02.b1_A002 Acid- and alkal... 126 4e-036
gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/c... 123 2e-035
gb|BE359627.1|BE359627 DG1_54_C02.g2_A002 Dark Grown 1 (DG1... 123 2e-035
gb|CX613427.1|CX613427 GABR1_8_C12.b1_A002 GA- or brassinol... 122 5e-035
gb|CW172683.1|CW172683 104_584_11156422_148_36543_095 Sorgh... 120 5e-035
gb|BG103129.1|BG103129 RHIZ2_18_E05.g1_A003 Rhizome2 (RHIZ2... 87 5e-034
gb|BE360131.1|BE360131 DG1_61_C06.g1_A002 Dark Grown 1 (DG1... 116 3e-033
gb|BE362457.1|BE362457 DG1_86_F01.g1_A002 Dark Grown 1 (DG1... 116 3e-033
gb|BE358854.1|BE358854 DG1_32_D09.g1_A002 Dark Grown 1 (DG1... 112 5e-032
gb|CD228966.1|CD228966 CCC1_11_F06.b1_A007 Callus culture/c... 112 5e-032
gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation... 125 2e-031
gb|CL162166.1|CL162166 104_354_10806217_114_31830_121 Sorgh... 132 7e-030
gb|CL178773.1|CL178773 104_387_10894824_148_31905_120 Sorgh... 105 8e-030
gb|CD462684.1|CD462684 ETH1_39_D04.b1_A002 Ethylene-treated... 102 2e-028
gb|CW322150.1|CW322150 104_815_11475938_148_35941_001 Sorgh... 97 5e-028
gb|CW216098.1|CW216098 104_648_11194932_116_37120_036 Sorgh... 119 6e-027
gb|BG102547.1|BG102547 RHIZ2_34_D08.g1_A003 Rhizome2 (RHIZ2... 94 2e-026
gb|CD228019.1|CD228019 CCC1_5_G06.b1_A007 Callus culture/ce... 93 4e-026
gb|CW216099.1|CW216099 104_648_11194932_148_37119_036 Sorgh... 119 5e-026
gb|BE358170.1|BE358170 DG1_24_B06.g1_A002 Dark Grown 1 (DG1... 92 5e-026
gb|CD224280.1|CD224280 CCC1_33_B12.b1_A007 Callus culture/c... 92 5e-026
gb|CD221984.1|CD221984 CCC1_1_H04.b1_A007 Callus culture/ce... 92 5e-026
gb|AW282498.1|AW282498 LG1_312_H11.g1_A002 Light Grown 1 (L... 94 7e-026
gb|CN127635.1|CN127635 RHOH1_24_D09.b1_A002 Acid- and alkal... 92 2e-025
gb|BE358464.1|BE358464 DG1_29_B03.g1_A002 Dark Grown 1 (DG1... 90 2e-025
gb|BE357975.1|BE357975 DG1_23_H01.g1_A002 Dark Grown 1 (DG1... 90 2e-025
gb|BE360023.1|BE360023 DG1_60_D11.g2_A002 Dark Grown 1 (DG1... 90 2e-025
gb|CD229249.1|CD229249 CCC1_14_A06.b1_A007 Callus culture/c... 88 1e-024
gb|CD221002.1|CD221002 CCC1_73_D05.b1_A007 Callus culture/c... 88 1e-024
gb|CD225385.1|CD225385 CCC1_3_E05.b1_A007 Callus culture/ce... 88 1e-024
gb|CD228496.1|CD228496 CCC1_8_G05.b1_A007 Callus culture/ce... 88 1e-024
gb|CD206826.1|CD206826 HS1_25_E08.b1_A012 Heat-shocked seed... 88 1e-024
gb|CD226206.1|CD226206 CCC1_44_F01.b1_A007 Callus culture/c... 88 1e-024
gb|CW265811.1|CW265811 104_735_11232087_148_35267_060 Sorgh... 97 3e-024
gb|CD222306.1|CD222306 CCC1_21_A12.b1_A007 Callus culture/c... 85 8e-024
gb|CD223152.1|CD223152 CCC1_26_B11.b1_A007 Callus culture/c... 85 8e-024
gb|BF585615.1|BF585615 FM1_23_E08.b1_A003 Floral-Induced Me... 76 1e-023
gb|CW329488.1|CW329488 104_826_11479871_148_35996_096 Sorgh... 85 2e-023
gb|CW275016.1|CW275016 104_748_11404736_116_35381_030 Sorgh... 76 2e-022
gb|CD228325.1|CD228325 CCC1_7_E03.b1_A007 Callus culture/ce... 80 3e-022
gb|CD208770.1|CD208770 HS1_44_F11.b1_A012 Heat-shocked seed... 77 2e-021
gb|CW070965.1|CW070965 104_323_10591330_116_30439 Sorghum m... 75 4e-021
gb|CX607705.1|CX607705 ANR1_30_F06.b1_A002 Anaerobic roots ... 75 6e-021
gb|CW070974.1|CW070974 104_323_10591332_116_30545 Sorghum m... 75 6e-021
>gb|CW321511.1|CW321511 104_814_11475594_148_35939_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475594, DNA
sequence
Length = 674
Score = 213 bits (460), Expect = 2e-054
Identities = 88/90 (97%), Positives = 90/90 (100%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
INNGLDSCVPPEVGLLREVTVFDVSFN+LVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA
Sbjct: 280 INNGLDSCVPPEVGLLREVTVFDVSFNALVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 459
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPS 280
ICALPRLKNLTISYNFFTGEPPSCARVVP+
Sbjct: 460 ICALPRLKNLTISYNFFTGEPPSCARVVPT 549
Score = 199 bits (430), Expect(2) = 3e-068
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = -1 / -1
Query: 276 GTTRAQDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPT 97
GTTRAQDGGSPVKKL*EMVRFL RG AQMASGTAPDRRLCATSSCSTLRIPATCCGSGPT
Sbjct: 545 GTTRAQDGGSPVKKL*EMVRFLRRGSAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPT 366
Query: 96 SELKLTSKTVTSRSKPTSGGTQESRPLLM 10
S LKLTSKTVTSRS+PTSGGTQESRPLLM
Sbjct: 365 SALKLTSKTVTSRSRPTSGGTQESRPLLM 279
Score = 174 bits (375), Expect(2) = 5e-056
Identities = 75/86 (87%), Positives = 77/86 (89%)
Frame = -3 / -3
Query: 295 PPVTVRRHDARAGRRLAGEEVVGDGQVLEPREGADGLRDGPGQAVVRDVQLLHLAHPGHL 116
P RRHDARAGRRLAGEEVVGDG+VLE RE ADGLRDG QAVVRDVQLLHLAHPGHL
Sbjct: 564 PVAVGRRHDARAGRRLAGEEVVGDGEVLEARERADGLRDGARQAVVRDVQLLHLAHPGHL 385
Query: 115 LRQRANERVEADVEDGHLPEQADLRR 38
LRQRA+ERVEADVEDGHLPEQADL R
Sbjct: 384 LRQRADERVEADVEDGHLPEQADLGR 307
Score = 85.8 bits (181), Expect(3) = 2e-028
Identities = 33/42 (78%), Positives = 33/42 (78%)
Frame = +2 / +1
Query: 251 PPSCARVVPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDCA 376
P V DGDRRNCLPNRP QRTPQQCAAFYSQPPVDCA
Sbjct: 523 PSCARVVPTPDGDRRNCLPNRPAQRTPQQCAAFYSQPPVDCA 648
Score = 80.3 bits (169), Expect(2) = 3e-068
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -1 / -1
Query: 375 AQSTGGCE*NAAHCCGVRCVGRLGRQFLLSPS 280
AQSTGGCE*NAAHCCGVRC GRLGRQFLLSPS
Sbjct: 647 AQSTGGCE*NAAHCCGVRCAGRLGRQFLLSPS 552
Score = 64.8 bits (135), Expect(2) = 5e-056
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3 / -3
Query: 370 VDGRLRVERGALLRRALCGAVGQAVPPVTVRR 275
VDGRLRVERGALLRRAL GAVGQAVPPV V R
Sbjct: 642 VDGRLRVERGALLRRALRGAVGQAVPPVAVGR 547
Score = 52.8 bits (109), Expect(3) = 2e-028
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3 / +2
Query: 120 WPGCARWSSWTSRTTAC 170
WPGCARWSSWTSRTTAC
Sbjct: 389 WPGCARWSSWTSRTTAC 439
Score = 25.8 bits (50), Expect(3) = 2e-028
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / +3
Query: 190 HLRPPAAQEPDH 225
HLR PA QEP H
Sbjct: 459 HLRAPAPQEPHH 494
>gb|BE359241.1|BE359241 DG1_39_H04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 149 bits (320), Expect(5) = 4e-056
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = +2 / +3
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSCAR 268
N+LVGPLPQQV GMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSCAR
Sbjct: 3 NALVGPLPQQVPGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSCAR 182
Query: 269 VVPS 280
VVP+
Sbjct: 183 VVPT 194
Score = 141 bits (302), Expect(6) = 8e-067
Identities = 59/63 (93%), Positives = 59/63 (93%)
Frame = -1 / -2
Query: 276 GTTRAQDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPT 97
GTTRAQDGGSPVKKL*EMVRFL RG AQMASGTAPDRRLCATSSCSTLRIP TCCGSGPT
Sbjct: 190 GTTRAQDGGSPVKKL*EMVRFLRRGSAQMASGTAPDRRLCATSSCSTLRIPGTCCGSGPT 11
Query: 96 SEL 88
S L
Sbjct: 10 SAL 2
Score = 137 bits (293), Expect(4) = 6e-053
Identities = 59/69 (85%), Positives = 61/69 (88%)
Frame = -3 / -1
Query: 295 PPVTVRRHDARAGRRLAGEEVVGDGQVLEPREGADGLRDGPGQAVVRDVQLLHLAHPGHL 116
P RRHDARAGRRLAGEEVVGDG+VLE RE ADGLRDG QAVVRDVQLLHLAHPGHL
Sbjct: 209 PVAVGRRHDARAGRRLAGEEVVGDGEVLEARERADGLRDGARQAVVRDVQLLHLAHPGHL 30
Query: 115 LRQRANERV 89
LRQRA+ERV
Sbjct: 29 LRQRADERV 3
Score = 85.8 bits (181), Expect(6) = 2e-036
Identities = 33/42 (78%), Positives = 33/42 (78%)
Frame = +2 / +3
Query: 251 PPSCARVVPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDCA 376
P V DGDRRNCLPNRP QRTPQQCAAFYSQPPVDCA
Sbjct: 168 PSCARVVPTPDGDRRNCLPNRPAQRTPQQCAAFYSQPPVDCA 293
Score = 80.3 bits (169), Expect(6) = 8e-067
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -1 / -2
Query: 375 AQSTGGCE*NAAHCCGVRCVGRLGRQFLLSPS 280
AQSTGGCE*NAAHCCGVRC GRLGRQFLLSPS
Sbjct: 292 AQSTGGCE*NAAHCCGVRCAGRLGRQFLLSPS 197
Score = 64.8 bits (135), Expect(4) = 6e-053
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3 / -1
Query: 370 VDGRLRVERGALLRRALCGAVGQAVPPVTVRR 275
VDGRLRVERGALLRRAL GAVGQAVPPV V R
Sbjct: 287 VDGRLRVERGALLRRALRGAVGQAVPPVAVGR 192
Score = 47.8 bits (98), Expect(6) = 2e-036
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3 / +1
Query: 123 PGCARWSSWTSRTTAC 170
PGCARWSSWTSRTTAC
Sbjct: 37 PGCARWSSWTSRTTAC 84
Score = 46.4 bits (95), Expect(5) = 4e-056
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2 / +2
Query: 377 IIPRPVATGIPYAVRIASATCAVPMI 454
II RP A IP+A+R+A+ATCA+PMI
Sbjct: 338 IISRPAAASIPHAIRVAAATCALPMI 415
Score = 42.3 bits (86), Expect(6) = 8e-067
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -2 / -1
Query: 596 INQEHY*SKHXND*PRTIVT 537
INQEH *SKH ND*PRTIVT
Sbjct: 584 INQEHC*SKHNND*PRTIVT 525
Score = 40.0 bits (81), Expect(4) = 6e-053
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / -2
Query: 595 SIKNTTNLSTXMTDHVQL* 539
SIKNT NLST MTDHVQL*
Sbjct: 583 SIKNTANLSTTMTDHVQL* 527
Score = 38.2 bits (77), Expect(5) = 4e-056
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / +1
Query: 532 FTVTIVRGQSLXCLD**CS*LI 597
+ VTIVRGQSL CLD* CS*L+
Sbjct: 520 YRVTIVRGQSLLCLD*QCS*LM 585
Score = 34.1 bits (68), Expect(5) = 4e-056
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 466 EKHYHFHLNSPPP 504
+KHYHFHLNS PP
Sbjct: 438 KKHYHFHLNSLPP 476
Score = 34.1 bits (68), Expect(6) = 8e-067
Identities = 17/26 (65%), Positives = 17/26 (65%)
Frame = -1 / -3
Query: 453 IIGTAQVAEAMRTA*GIPVATGRGMM 376
IIG AQVA A R A GI A GR MM
Sbjct: 414 IIGNAQVAAATRMAWGILAAAGRDMM 337
Score = 32.7 bits (65), Expect(6) = 2e-036
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +2 / +2
Query: 542 QLYVVSHXXA*ISSVLD** 598
QLYVVSH A*ISSVLD**
Sbjct: 530 QLYVVSHCCA*ISSVLD** 586
Score = 28.1 bits (55), Expect(6) = 2e-036
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3 / +2
Query: 462 EREALSLSP*FATTAA 509
E+EALSLSP*F+ AA
Sbjct: 434 EKEALSLSP*FSAAAA 481
Score = 26.7 bits (52), Expect(5) = 4e-056
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / +3
Query: 594 DSYRHIEDY 620
DSYRHIEDY
Sbjct: 585 DSYRHIEDY 611
Score = 26.7 bits (52), Expect(6) = 8e-067
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1 / -1
Query: 507 QRWWRIKVKVIVLLAP 460
+R RIKVKVIVLL+P
Sbjct: 479 RRRQRIKVKVIVLLSP 432
Score = 25.8 bits (50), Expect(6) = 2e-036
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 190 HLRPPAAQEPDH 225
HLR PA QEP H
Sbjct: 104 HLRAPAPQEPHH 139
Score = 25.4 bits (49), Expect(4) = 6e-053
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 503 GGGELR*K**CFSL 462
GG ELR*K**CF L
Sbjct: 475 GGRELR*K**CFFL 434
Score = 22.6 bits (43), Expect(6) = 2e-036
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1 / +1
Query: 592 LIATGI*KIILL 627
+IATGI*KII++
Sbjct: 583 MIATGI*KIIII 618
Score = 22.6 bits (43), Expect(6) = 8e-067
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1 / -3
Query: 525 CLHPAQQR 502
CLHPAQ+R
Sbjct: 504 CLHPAQRR 481
>gb|CD424558.1|CD424558 SA1_6_C12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 5', mRNA sequence
Length = 718
Score = 138 bits (296), Expect(2) = 3e-039
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N+G+ SC+PPE+G L ++TV D+SFN++ G LP + MR +EQLDVAHNRL+G +PE+
Sbjct: 208 LNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIGNMRALEQLDVAHNRLAGEIPES 387
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC LP LKN T SYNFF GEP C V
Sbjct: 388 ICELPHLKNFTYSYNFFCGEPHRCLEV 468
Score = 44.6 bits (91), Expect(2) = 3e-039
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 466 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 567
>gb|CW329487.1|CW329487 104_826_11479871_116_35995_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479871, DNA
sequence
Length = 703
Score = 138 bits (296), Expect(2) = 3e-039
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N+G+ SC+PPE+G L ++TV D+SFN++ G LP + MR +EQLDVAHNRL+G +PE+
Sbjct: 226 LNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIGNMRALEQLDVAHNRLAGEIPES 405
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC LP LKN T SYNFF GEP C V
Sbjct: 406 ICELPHLKNFTYSYNFFCGEPHRCLEV 486
Score = 44.6 bits (91), Expect(2) = 3e-039
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 484 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 585
>gb|CD464043.1|CD464043 ETH1_48_G09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_G09_A002 3', mRNA sequence
Length = 691
Score = 138 bits (296), Expect(2) = 3e-039
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N+G+ SC+PPE+G L ++TV D+SFN++ G LP + MR +EQLDVAHNRL+G +PE+
Sbjct: 93 LNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIGNMRALEQLDVAHNRLAGEIPES 272
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC LP LKN T SYNFF GEP C V
Sbjct: 273 ICELPHLKNFTYSYNFFCGEPHRCLEV 353
Score = 44.6 bits (91), Expect(2) = 3e-039
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 351 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 452
>gb|CN126440.1|CN126440 RHOH1_17_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_17_D12_A002 3', mRNA sequence
Length = 588
Score = 138 bits (296), Expect(2) = 3e-039
Identities = 51/87 (58%), Positives = 66/87 (75%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N+G+ SC+PPE+G L ++TV D+SFN++ G LP + MR +EQLDVAHNRL+G +PE+
Sbjct: 2 LNSGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIGNMRALEQLDVAHNRLAGEIPES 181
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC LP LKN T SYNFF GEP C V
Sbjct: 182 ICELPHLKNFTYSYNFFCGEPHRCLEV 262
Score = 44.6 bits (91), Expect(2) = 3e-039
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +2
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 260 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 361
>gb|CW481051.1|CW481051 fsbb001f240g19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240g19, DNA
sequence
Length = 292
Score = 161 bits (346), Expect = 1e-038
Identities = 62/86 (72%), Positives = 73/86 (84%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
INNGL SC PPE+GLLRE+TV DVSFN L GPLP ++A MRK+EQLDVAHN ++GA+P
Sbjct: 35 INNGLTSCFPPEIGLLRELTVLDVSFNQLAGPLPPELALMRKLEQLDVAHNLVTGAIPSG 214
Query: 191 ICALPRLKNLTISYNFFTGEPPSCAR 268
IC LPRL+N T +YNFFTGEPP+CAR
Sbjct: 215 ICDLPRLRNFTFAYNFFTGEPPACAR 292
Score = 123 bits (263), Expect = 3e-027
Identities = 57/89 (64%), Positives = 64/89 (71%)
Frame = -1 / -2
Query: 267 RAQDGGSPVKKL*EMVRFLSRGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSEL 88
RA GGSPVKKL* V+FL RGR+ + G AP RLCATSSCS+ + A+ GSGP S L
Sbjct: 291 RAHAGGSPVKKL*AKVKFLRRGRSHIPDGMAPVTRLCATSSCSSFLMSASSGGSGPASWL 112
Query: 87 KLTSKTVTSRSKPTSGGTQESRPLLMGWI 1
KLTS TV+SRS P SGG QE RPLLM I
Sbjct: 111 KLTSSTVSSRSSPISGGKQEVRPLLMSRI 25
Score = 102 bits (217), Expect = 6e-021
Identities = 50/77 (64%), Positives = 54/77 (70%)
Frame = -3 / -1
Query: 268 ARAGRRLAGEEVVGDGQVLEPREGADGLRDGPGQAVVRDVQLLHLAHPGHLLRQRANERV 89
ARA RRLA EEVVG+G+V E R+ A R G G VVRDVQLL L H L RQRA E V
Sbjct: 292 ARARRRLAREEVVGEGEVPEARQVAYPRRYGAGDQVVRDVQLLQLPHERELRRQRAGELV 113
Query: 88 EADVEDGHLPEQADLRR 38
EADVE G LP+Q DLRR
Sbjct: 112 EADVEHGELPQQPDLRR 62
>gb|CN137605.1|CN137605 OX1_58_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_H05_A002 3', mRNA sequence
Length = 634
Score = 134 bits (287), Expect(2) = 5e-038
Identities = 50/87 (57%), Positives = 64/87 (73%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N G+ SC+PPE+G L ++TV D+SFN++ G LP + MR +EQLDVAHNRL+G +PE+
Sbjct: 68 LNRGISSCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIGNMRALEQLDVAHNRLAGDIPES 247
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC LP LKN T YNFF GEP C V
Sbjct: 248 ICELPHLKNFTYWYNFFCGEPHRCLEV 328
Score = 44.6 bits (91), Expect(2) = 5e-038
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +2
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 326 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 427
>gb|CW337923.1|CW337923 104_838_11484471_116_36126_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484471, DNA
sequence
Length = 668
Score = 128 bits (275), Expect(2) = 7e-037
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N GL SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE
Sbjct: 199 LNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEG 378
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+CALP L+N T SYN+F EP C
Sbjct: 379 VCALPSLRNFTYSYNYFCTEPRRC 450
Score = 46.4 bits (95), Expect(2) = 7e-037
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 472 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 558
>gb|CW063943.1|CW063943 104_309_10522288_114_30136 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522288, DNA
sequence
Length = 661
Score = 128 bits (275), Expect(2) = 7e-037
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +2 / -2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N GL SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE
Sbjct: 423 LNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEG 244
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+CALP L+N T SYN+F EP C
Sbjct: 243 VCALPSLRNFTYSYNYFCTEPRRC 172
Score = 46.4 bits (95), Expect(2) = 7e-037
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / -2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 150 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 64
>gb|CD206011.1|CD206011 HS1_20_G11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_20_G11_A012 3', mRNA sequence
Length = 648
Score = 128 bits (275), Expect(2) = 7e-037
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N GL SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE
Sbjct: 91 LNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEG 270
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+CALP L+N T SYN+F EP C
Sbjct: 271 VCALPSLRNFTYSYNYFCTEPRRC 342
Score = 46.4 bits (95), Expect(2) = 7e-037
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 364 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 450
>gb|CD222617.1|CD222617 CCC1_23_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_C12_A007 3', mRNA sequence
Length = 618
Score = 128 bits (275), Expect(2) = 7e-037
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N GL SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE
Sbjct: 92 LNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEG 271
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+CALP L+N T SYN+F EP C
Sbjct: 272 VCALPSLRNFTYSYNYFCTEPRRC 343
Score = 46.4 bits (95), Expect(2) = 7e-037
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 365 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 451
>gb|CD424461.1|CD424461 SA1_6_C12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_6_C12_A002 3', mRNA sequence
Length = 580
Score = 130 bits (279), Expect(2) = 7e-037
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = +2 / +1
Query: 29 SCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPR 208
SC+PPE+G L ++TV D+SFN++ G LP + MR +EQLDVAHNRL+G +PE+IC LP
Sbjct: 1 SCIPPEIGKLDKLTVLDLSFNNIAGTLPDTIGNMRALEQLDVAHNRLAGEIPESICELPH 180
Query: 209 LKNLTISYNFFTGEPPSCARV 271
LKN T SYNFF GEP C V
Sbjct: 181 LKNFTYSYNFFCGEPHRCLEV 243
Score = 44.6 bits (91), Expect(2) = 7e-037
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 241 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 342
>gb|CD223588.1|CD223588 CCC1_29_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_B11_A007 3', mRNA sequence
Length = 605
Score = 126 bits (270), Expect(2) = 3e-036
Identities = 49/84 (58%), Positives = 63/84 (75%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N GL SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAH+ L G +PE
Sbjct: 60 LNAGLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHSELWGHIPEG 239
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+CALP L+N T SYN+F EP C
Sbjct: 240 VCALPSLRNFTYSYNYFCTEPRRC 311
Score = 46.4 bits (95), Expect(2) = 3e-036
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 333 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 419
>gb|CN126812.1|CN126812 RHOH1_19_G02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_19_G02_A002 3', mRNA sequence
Length = 734
Score = 126 bits (269), Expect(2) = 4e-036
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = +2 / +1
Query: 20 GLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICA 199
GL SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CA
Sbjct: 40 GLRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCA 219
Query: 200 LPRLKNLTISYNFFTGEPPSC 262
LP L+N T SYN+F EP C
Sbjct: 220 LPSLRNFTYSYNYFCTEPRRC 282
Score = 46.4 bits (95), Expect(2) = 4e-036
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 304 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 390
>gb|CD227866.1|CD227866 CCC1_56_E07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_E07_A007 3', mRNA sequence
Length = 642
Score = 123 bits (264), Expect(2) = 2e-035
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N GL S +P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE
Sbjct: 92 LNAGLRSYIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEG 271
Query: 191 ICALPRLKNLTISYNFFTGEPPSC 262
+CALP L+N T SYN+F EP C
Sbjct: 272 VCALPSLRNFTYSYNYFCTEPRRC 343
Score = 46.4 bits (95), Expect(2) = 2e-035
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 365 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 451
>gb|BE359627.1|BE359627 DG1_54_C02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 438
Score = 123 bits (264), Expect(2) = 2e-035
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +2 / +3
Query: 20 GLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICA 199
G SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CA
Sbjct: 6 GXRSCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCA 185
Query: 200 LPRLKNLTISYNFFTGEPPSC 262
LP L+N T SYN+F EP C
Sbjct: 186 LPSLRNFTYSYNYFCTEPRRC 248
Score = 46.4 bits (95), Expect(2) = 2e-035
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 270 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 356
>gb|CX613427.1|CX613427 GABR1_8_C12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_C12_A002 3', mRNA sequence
Length = 677
Score = 122 bits (261), Expect(2) = 5e-035
Identities = 47/78 (60%), Positives = 59/78 (75%)
Frame = +2 / +2
Query: 29 SCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPR 208
SC+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP
Sbjct: 5 SCIPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPS 184
Query: 209 LKNLTISYNFFTGEPPSC 262
L+N T SYN+F EP C
Sbjct: 185 LRNFTYSYNYFCTEPRRC 238
Score = 46.4 bits (95), Expect(2) = 5e-035
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 260 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 346
>gb|CW172683.1|CW172683 104_584_11156422_148_36543_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156422, DNA
sequence
Length = 582
Score = 120 bits (256), Expect(2) = 5e-035
Identities = 45/91 (49%), Positives = 64/91 (70%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+N + SC+PPE+G L+++ V D+S N L G LP+ V M +E L+V +N+LSG VPE+
Sbjct: 382 LNTSISSCIPPEIGKLKKLRVLDLSRNELAGELPESVGDMESLEVLNVGYNQLSGVVPES 203
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSD 283
IC LP+LKNLT++ N+F GEP SC + D
Sbjct: 202 ICLLPKLKNLTVAGNYFCGEPVSCLHIPVRD 110
Score = 48.7 bits (100), Expect(2) = 5e-035
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2 / -3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DR NC+P P QRT ++C AF +PPV C
Sbjct: 124 IPVRDDRMNCIPEWPHQRTHEECIAFEHRPPVHC 23
>gb|BG103129.1|BG103129 RHIZ2_18_E05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 499
Score = 87.2 bits (184), Expect(4) = 3e-025
Identities = 33/43 (76%), Positives = 34/43 (79%)
Frame = +2 / +1
Query: 251 PPSCARVVPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDCAI 379
P V DGDRRNCLPNRP QRTPQQCAAFYSQPPVDCA+
Sbjct: 28 PSCARVVPTPDGDRRNCLPNRPAQRTPQQCAAFYSQPPVDCAV 156
Score = 80.3 bits (169), Expect(5) = 5e-034
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -1 / -3
Query: 375 AQSTGGCE*NAAHCCGVRCVGRLGRQFLLSPS 280
AQSTGGCE*NAAHCCGVRC GRLGRQFLLSPS
Sbjct: 152 AQSTGGCE*NAAHCCGVRCAGRLGRQFLLSPS 57
Score = 63.8 bits (133), Expect(4) = 5e-024
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = -3 / -2
Query: 370 VDGRLRVERGALLRRALCGAVGQAVPPVTVRR 275
VDGRL VERGALLRRAL GAVGQAVPPV VRR
Sbjct: 147 VDGRL*VERGALLRRALRGAVGQAVPPVAVRR 52
Score = 50.6 bits (104), Expect(6) = 2e-030
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +2 / +3
Query: 311 RPTQRTPQQCAAFYSQPPVDCAIIPRPVATGIPYAVRIASATCAVPMI 454
R +R P Q S II RP A IP+A+R+A+ATCA+PMI
Sbjct: 141 RRLRRVPVQAVRPCSAAAAATTIISRPAAASIPHAIRVAAATCALPMI 284
Score = 47.3 bits (97), Expect(6) = 2e-030
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2 / +1
Query: 227 SYNFFTGEPPSCARVVPS 280
SYNFFTGEPPSCARVVP+
Sbjct: 1 SYNFFTGEPPSCARVVPT 54
Score = 45.5 bits (93), Expect(5) = 5e-034
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -3 / -2
Query: 295 PPVTVRRHDARAGRRLAGEEVVG 227
P RRHDARAGRRLAGEEVVG
Sbjct: 69 PVAVRRRHDARAGRRLAGEEVVG 1
Score = 42.3 bits (86), Expect(5) = 5e-034
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -2 / -2
Query: 596 INQEHY*SKHXND*PRTIVT 537
INQEH *SKH ND*PRTIVT
Sbjct: 453 INQEHC*SKHNND*PRTIVT 394
Score = 40.0 bits (81), Expect(4) = 5e-024
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -3 / -3
Query: 595 SIKNTTNLSTXMTDHVQL* 539
SIKNT NLST MTDHVQL*
Sbjct: 452 SIKNTANLSTTMTDHVQL* 396
Score = 38.6 bits (78), Expect(4) = 5e-024
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1 / -3
Query: 276 GTTRAQDGGSPVKKL* 229
GTTRAQDGGSPVKKL*
Sbjct: 50 GTTRAQDGGSPVKKL* 3
Score = 38.2 bits (77), Expect(6) = 2e-030
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1 / +2
Query: 532 FTVTIVRGQSLXCLD**CS*LI 597
+ VTIVRGQSL CLD* CS*L+
Sbjct: 389 YRVTIVRGQSLLCLD*QCS*LM 454
Score = 36.3 bits (73), Expect(6) = 2e-030
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1 / +1
Query: 466 EKHYHFHLNSPPP 504
+KH+HFHLNSPPP
Sbjct: 307 KKHHHFHLNSPPP 345
Score = 32.7 bits (65), Expect(4) = 3e-025
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +2 / +3
Query: 542 QLYVVSHXXA*ISSVLD** 598
QLYVVSH A*ISSVLD**
Sbjct: 399 QLYVVSHCCA*ISSVLD** 455
Score = 29.0 bits (57), Expect(4) = 3e-025
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2 / +2
Query: 461 GARSTITFTLIRHHR 505
G RSTITFTLIR R
Sbjct: 302 GERSTITFTLIRRRR 346
Score = 26.7 bits (52), Expect(6) = 2e-030
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 594 DSYRHIEDY 620
DSYRHIEDY
Sbjct: 454 DSYRHIEDY 480
Score = 26.7 bits (52), Expect(5) = 5e-034
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 503 GGGELR*K**CFSL 462
GGGELR*K* CF L
Sbjct: 344 GGGELR*K*WCFFL 303
Score = 24.9 bits (48), Expect(4) = 5e-024
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -1 / -2
Query: 495 RIKVKVIVLLAP 460
RIKVKV+VLL+P
Sbjct: 336 RIKVKVMVLLSP 301
Score = 23.5 bits (45), Expect(6) = 2e-030
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3 / +2
Query: 279 RTVTGGTAC 305
RT TGGTAC
Sbjct: 56 RTATGGTAC 82
Score = 22.6 bits (43), Expect(4) = 3e-025
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 592 LIATGI*KIILL 627
+IATGI*KII++
Sbjct: 452 MIATGI*KIIII 487
Score = 22.6 bits (43), Expect(5) = 5e-034
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1 / -1
Query: 525 CLHPAQQR 502
CLHPAQ+R
Sbjct: 373 CLHPAQRR 350
>gb|BE360131.1|BE360131 DG1_61_C06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 424
Score = 116 bits (248), Expect(2) = 3e-033
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +2 / +2
Query: 35 VPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLK 214
+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+
Sbjct: 2 IPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLR 181
Query: 215 NLTISYNFFTGEPPSC 262
N T SYN+F EP C
Sbjct: 182 NFTYSYNYFCTEPRRC 229
Score = 46.4 bits (95), Expect(2) = 3e-033
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 251 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 337
>gb|BE362457.1|BE362457 DG1_86_F01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 402
Score = 116 bits (248), Expect(2) = 3e-033
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +2 / +3
Query: 35 VPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLK 214
+P EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+
Sbjct: 3 IPQEVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLR 182
Query: 215 NLTISYNFFTGEPPSC 262
N T SYN+F EP C
Sbjct: 183 NFTYSYNYFCTEPRRC 230
Score = 46.4 bits (95), Expect(2) = 3e-033
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 252 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 338
>gb|BE358854.1|BE358854 DG1_32_D09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 668
Score = 112 bits (239), Expect(2) = 5e-032
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +2 / +3
Query: 44 EVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLT 223
EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T
Sbjct: 6 EVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFT 185
Query: 224 ISYNFFTGEPPSC 262
SYN+F EP C
Sbjct: 186 YSYNYFCTEPRRC 224
Score = 46.4 bits (95), Expect(2) = 5e-032
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 246 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 332
>gb|CD228966.1|CD228966 CCC1_11_F06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_11_F06_A007 3', mRNA sequence
Length = 651
Score = 112 bits (239), Expect(2) = 5e-032
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = +2 / +2
Query: 44 EVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLT 223
EVG LRE+TV D+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T
Sbjct: 5 EVGWLRELTVLDLSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFT 184
Query: 224 ISYNFFTGEPPSC 262
SYN+F EP C
Sbjct: 185 YSYNYFCTEPRRC 223
Score = 46.4 bits (95), Expect(2) = 5e-032
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 245 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 331
>gb|CW491052.1|CW491052 fsbb001f280m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f280m01, DNA
sequence
Length = 482
Score = 125 bits (267), Expect = 8e-028
Identities = 51/79 (64%), Positives = 59/79 (74%)
Frame = +2 / +3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
INNGL SC PPE+GLLRE+TV DVSFN L GPLP ++A MRK+EQLDVAHN L+GA+P
Sbjct: 177 INNGLTSCFPPEIGLLRELTVLDVSFNQLAGPLPPELALMRKLEQLDVAHNLLTGAIPSG 356
Query: 191 ICALPRLKNLTISYNFFTG 247
IC LPRL L + G
Sbjct: 357 ICDLPRLTELHLRLQLLPG 413
Score = 95.9 bits (203), Expect(2) = 2e-031
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = -1 / -2
Query: 207 RGRAQMASGTAPDRRLCATSSCSTLRIPATCCGSGPTSELKLTSKTVTSRSKPTSGGTQE 28
RGR+ + G AP RLCATSSCS+ + A+ GSGP S LKLTS TV+SRS+P SGG QE
Sbjct: 373 RGRSHIPDGMAPVSRLCATSSCSSFLMSASSGGSGPASWLKLTSSTVSSRSRPISGGKQE 194
Query: 27 SRPLLMGWI 1
RPLLM I
Sbjct: 193 VRPLLMSRI 167
Score = 77.1 bits (162), Expect(2) = 3e-022
Identities = 37/58 (63%), Positives = 40/58 (68%)
Frame = -3 / -1
Query: 211 EPREGADGLRDGPGQAVVRDVQLLHLAHPGHLLRQRANERVEADVEDGHLPEQADLRR 38
E R+ A R G G+ VVRDVQLL L H L RQRA E VEADVE G LP+QADLRR
Sbjct: 377 EARQVAYPRRYGAGEQVVRDVQLLQLPHERELRRQRAGELVEADVEHGELPQQADLRR 204
Score = 61.1 bits (127), Expect(2) = 2e-031
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -3 / -3
Query: 313 AVGQAVPPVTVRRHDARAGRRLAGEEVVGDGQVL 212
AVGQAV PV V RHDARA RRLA EEVVG+G+VL
Sbjct: 480 AVGQAVAPVAVPRHDARARRRLAREEVVGEGEVL 379
Score = 49.2 bits (101), Expect(2) = 3e-022
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = -1 / -1
Query: 315 GRLGRQFLLSPSEGTTRAQDGGSPVKKL*EMVRF 214
GR GRQ+L S S GTTRA GGSP KKL* V+F
Sbjct: 482 GRSGRQWLRSLSRGTTRAHAGGSPGKKL*AKVKF 381
>gb|CL162166.1|CL162166 104_354_10806217_114_31830_121 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806217, DNA
sequence
Length = 562
Score = 132 bits (282), Expect = 7e-030
Identities = 51/93 (54%), Positives = 64/93 (68%)
Frame = +2 / -1
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N GL SCVPPE+ L +TV D+SFN L+G +P ++A + ++QLD+ HNRL G VPE I
Sbjct: 547 NTGLKSCVPPELAALTGLTVLDISFNKLMGAIPDELASLGSIQQLDLGHNRLVGDVPEGI 368
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
C LP L+N T SYNF TGEPP+C V D R
Sbjct: 367 CRLPHLQNFTYSYNFITGEPPACMHVKTLDDRR 269
>gb|CL178773.1|CL178773 104_387_10894824_148_31905_120 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894824, DNA
sequence
Length = 334
Score = 105 bits (223), Expect(2) = 8e-030
Identities = 41/83 (49%), Positives = 57/83 (68%)
Frame = +2 / +2
Query: 35 VPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLK 214
+PPE+G L+++ V D+S N L G LP+ V M + L+V +N+LSG VPE+IC LP+LK
Sbjct: 2 IPPEIGKLKKLRVLDLSRNELAGELPESVGDMESLHVLNVGYNQLSGVVPESICLLPKLK 181
Query: 215 NLTISYNFFTGEPPSCARVVPSD 283
NLT++ FF GEP SC + D
Sbjct: 182 NLTVAGPFFCGEPVSCLHIPVRD 250
Score = 46.0 bits (94), Expect(2) = 8e-030
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2 / +2
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPV 367
+P DR NCLP P QRT ++C AF +PPV
Sbjct: 236 IPVRDDRMNCLPEWPHQRTHEECIAFEHRPPV 331
>gb|CD462684.1|CD462684 ETH1_39_D04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_39_D04_A002 3', mRNA sequence
Length = 448
Score = 102 bits (217), Expect(2) = 2e-028
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +2 / +3
Query: 83 SFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
SFN++ G LP + MR +EQLDVAHNRL+G +PE+IC LP LKN T SYNFF GEP C
Sbjct: 3 SFNNIAGTLPDTIGNMRALEQLDVAHNRLAGEIPESICELPHLKNFTYSYNFFCGEPHRC 182
Query: 263 ARV 271
V
Sbjct: 183 LEV 191
Score = 44.6 bits (91), Expect(2) = 2e-028
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 189 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 290
>gb|CW322150.1|CW322150 104_815_11475938_148_35941_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475938, DNA
sequence
Length = 694
Score = 96.8 bits (205), Expect(2) = 5e-028
Identities = 39/76 (51%), Positives = 52/76 (68%)
Frame = +2 / -3
Query: 56 LREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYN 235
LR++ V D S N L G LP+ V M +E L+V +N+LSG VPE+IC LP+LKNLT++ N
Sbjct: 689 LRKLRVLDFSRNELAGELPESVGDMESLEVLNVGYNQLSGVVPESICLLPKLKNLTVAGN 510
Query: 236 FFTGEPPSCARVVPSD 283
+F GEP SC + D
Sbjct: 509 YFCGEPVSCLHIPVRD 462
Score = 48.7 bits (100), Expect(2) = 5e-028
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2 / -3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
+P DR NC+P P QRT ++C AF +PPV C
Sbjct: 476 IPVRDDRMNCIPEWPHQRTHEECIAFEHRPPVHC 375
>gb|CW216098.1|CW216098 104_648_11194932_116_37120_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194932, DNA
sequence
Length = 622
Score = 119 bits (254), Expect(2) = 6e-027
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
INN + C+P E GLL TVFDVS N+L G +P +AG+ KVEQLD++ NR +G VP
Sbjct: 578 INNSITGCLPVETGLLTNATVFDVSDNALTGSIPPTLAGLSKVEQLDLSRNRFTGDVPSG 399
Query: 191 ICALPRLKNLTISYNFFTGEPPSCA 265
+C LP L NL++SYNFFT E C+
Sbjct: 398 VCKLPALANLSVSYNFFTSEAAECS 324
Score = 22.6 bits (43), Expect(2) = 6e-027
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2 / -3
Query: 308 NRPTQRTPQQCAAFYSQP 361
+RP QR +C SQP
Sbjct: 269 SRPMQRGADECTQVVSQP 216
>gb|BG102547.1|BG102547 RHIZ2_34_D08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 513
Score = 94.1 bits (199), Expect(2) = 2e-026
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +2 / +2
Query: 77 DVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPP 256
D+SFN L G LP+ +AG+ +++QLDVAHN L G +PE +CALP L+N T SYN+F EP
Sbjct: 2 DLSFNELQGMLPESMAGLHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPR 181
Query: 257 SC 262
C
Sbjct: 182 RC 187
Score = 46.4 bits (95), Expect(2) = 2e-026
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 209 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 295
>gb|CD228019.1|CD228019 CCC1_5_G06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_G06_A007 3', mRNA sequence
Length = 594
Score = 92.7 bits (196), Expect(2) = 4e-026
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 80 VSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPS 259
+SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP
Sbjct: 1 LSFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRR 180
Query: 260 C 262
C
Sbjct: 181 C 183
Score = 46.4 bits (95), Expect(2) = 4e-026
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 205 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 291
>gb|CW216099.1|CW216099 104_648_11194932_148_37119_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194932, DNA
sequence
Length = 682
Score = 119 bits (254), Expect = 5e-026
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
INN + C+P E GLL TVFDVS N+L G +P +AG+ KVEQLD++ NR +G VP
Sbjct: 361 INNSITGCLPVETGLLTNATVFDVSDNALTGSIPPTLAGLSKVEQLDLSRNRFTGDVPSG 540
Query: 191 ICALPRLKNLTISYNFFTGEPPSCA 265
+C LP L NL++SYNFFT E C+
Sbjct: 541 VCKLPALANLSVSYNFFTSEAAECS 615
>gb|BE358170.1|BE358170 DG1_24_B06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 651
Score = 92.3 bits (195), Expect(2) = 5e-026
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +2 / +3
Query: 83 SFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 SFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 182
Score = 46.4 bits (95), Expect(2) = 5e-026
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 204 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 290
>gb|CD224280.1|CD224280 CCC1_33_B12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_33_B12_A007 3', mRNA sequence
Length = 615
Score = 92.3 bits (195), Expect(2) = 5e-026
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +2 / +1
Query: 83 SFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 1 SFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 180
Score = 46.4 bits (95), Expect(2) = 5e-026
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 202 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 288
>gb|CD221984.1|CD221984 CCC1_1_H04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_H04_A007 3', mRNA sequence
Length = 561
Score = 92.3 bits (195), Expect(2) = 5e-026
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +2 / +2
Query: 83 SFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
SFN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 2 SFNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 181
Score = 46.4 bits (95), Expect(2) = 5e-026
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 203 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 289
>gb|AW282498.1|AW282498 LG1_312_H11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 480
Score = 93.6 bits (198), Expect(2) = 7e-026
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2 / +1
Query: 101 GPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSCARV 271
G LP + MR +EQLDVAHNRL+G +PE+IC LP LKN T SYNFF GEP C V
Sbjct: 1 GTLPDTIGNMRALEQLDVAHNRLAGEIPESICELPHLKNFTYSYNFFCGEPHRCLEV 171
Score = 44.6 bits (91), Expect(2) = 7e-026
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +1
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 169 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 270
>gb|CN127635.1|CN127635 RHOH1_24_D09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D09_A002 3', mRNA sequence
Length = 746
Score = 92.3 bits (195), Expect(2) = 2e-025
Identities = 36/71 (50%), Positives = 46/71 (64%)
Frame = +2 / +3
Query: 59 REVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNF 238
+++ ++ N LP + MR +EQLDVAHNRL+G +PE+IC LP LKN T SYNF
Sbjct: 129 KKIDALFINNNHFEFSLPDTIGNMRALEQLDVAHNRLAGEIPESICELPHLKNFTYSYNF 308
Query: 239 FTGEPPSCARV 271
F GEP C V
Sbjct: 309 FCGEPHRCLEV 341
Score = 44.6 bits (91), Expect(2) = 2e-025
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
VP DR+NC+ RP QR ++C +F QP V C
Sbjct: 339 VPRIDDRQNCIAGRPDQRPGEECISFLHQPRVHC 440
>gb|BE358464.1|BE358464 DG1_29_B03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 645
Score = 90.4 bits (191), Expect(2) = 2e-025
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +2 / +1
Query: 86 FNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
FN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 1 FNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 177
Score = 46.4 bits (95), Expect(2) = 2e-025
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 199 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 285
>gb|BE357975.1|BE357975 DG1_23_H01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 90.4 bits (191), Expect(2) = 2e-025
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +2 / +3
Query: 86 FNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
FN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 FNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 179
Score = 46.4 bits (95), Expect(2) = 2e-025
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 201 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 287
>gb|BE360023.1|BE360023 DG1_60_D11.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 90.4 bits (191), Expect(2) = 2e-025
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +2 / +2
Query: 86 FNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
FN L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 2 FNELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 178
Score = 46.4 bits (95), Expect(2) = 2e-025
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 200 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 286
>gb|CD229249.1|CD229249 CCC1_14_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_14_A06_A007 3', mRNA sequence
Length = 664
Score = 87.7 bits (185), Expect(2) = 1e-024
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2 / +3
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
N L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 NELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 176
Score = 46.4 bits (95), Expect(2) = 1e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 198 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 284
>gb|CD221002.1|CD221002 CCC1_73_D05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_D05_A007 3', mRNA sequence
Length = 647
Score = 87.7 bits (185), Expect(2) = 1e-024
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2 / +1
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
N L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 1 NELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 174
Score = 46.4 bits (95), Expect(2) = 1e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 196 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 282
>gb|CD225385.1|CD225385 CCC1_3_E05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_3_E05_A007 3', mRNA sequence
Length = 612
Score = 87.7 bits (185), Expect(2) = 1e-024
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2 / +3
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
N L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 NELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 176
Score = 46.4 bits (95), Expect(2) = 1e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 198 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 284
>gb|CD228496.1|CD228496 CCC1_8_G05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_G05_A007 3', mRNA sequence
Length = 612
Score = 87.7 bits (185), Expect(2) = 1e-024
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2 / +3
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
N L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 NELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 176
Score = 46.4 bits (95), Expect(2) = 1e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 198 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 284
>gb|CD206826.1|CD206826 HS1_25_E08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_25_E08_A012 3', mRNA sequence
Length = 599
Score = 87.7 bits (185), Expect(2) = 1e-024
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2 / +3
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
N L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 NELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 176
Score = 46.4 bits (95), Expect(2) = 1e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 198 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 284
>gb|CD226206.1|CD226206 CCC1_44_F01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_F01_A007 3', mRNA sequence
Length = 590
Score = 87.7 bits (185), Expect(2) = 1e-024
Identities = 33/58 (56%), Positives = 42/58 (72%)
Frame = +2 / +3
Query: 89 NSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
N L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 3 NELQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 176
Score = 46.4 bits (95), Expect(2) = 1e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +3
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 198 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 284
>gb|CW265811.1|CW265811 104_735_11232087_148_35267_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232087, DNA
sequence
Length = 515
Score = 96.8 bits (205), Expect(2) = 3e-024
Identities = 42/64 (65%), Positives = 49/64 (76%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
I++ L CVPP+VGLLR+VTVFDVS N L GPLP VAGM V+QL+VA N L G VP A
Sbjct: 76 IDDDLTGCVPPQVGLLRKVTVFDVSGNHLQGPLPPTVAGMAAVQQLNVAGNLLRGPVPPA 255
Query: 191 ICAL 202
+CAL
Sbjct: 256 VCAL 267
Score = 35.9 bits (72), Expect(2) = 3e-024
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2 / +1
Query: 290 RRNCLPNRPTQRTPQQCAAFYSQPPVDCAIIPRPVATGIP 409
R NC+P P QR P QCAA + A P +G P
Sbjct: 349 RWNCIPGAPAQRPPPQCAAAAAPFDCRTAQCQAPPTSGTP 468
>gb|CD222306.1|CD222306 CCC1_21_A12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_A12_A007 3', mRNA sequence
Length = 627
Score = 84.9 bits (179), Expect(2) = 8e-024
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2 / +2
Query: 95 LVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 2 LQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 169
Score = 46.4 bits (95), Expect(2) = 8e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 191 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 277
>gb|CD223152.1|CD223152 CCC1_26_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_26_B11_A007 3', mRNA sequence
Length = 475
Score = 84.9 bits (179), Expect(2) = 8e-024
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2 / +2
Query: 95 LVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAICALPRLKNLTISYNFFTGEPPSC 262
L G LP+ +AGM +++QLDVAHN L G +PE +CALP L+N T SYN+F EP C
Sbjct: 2 LQGMLPESMAGMHELQQLDVAHNELWGHIPEGVCALPSLRNFTYSYNYFCTEPRRC 169
Score = 46.4 bits (95), Expect(2) = 8e-024
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 287 DRRNCLPNRPTQRTPQQCAAFYSQPPVDC 373
DR+NC+ RP QR QC AF +PPV C
Sbjct: 191 DRQNCIAGRPDQRPTDQCLAFLHRPPVHC 277
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 523,505,619
Number of Sequences: 832831
Number of extensions: 6956615
Number of successful extensions: 104886
Number of sequences better than 1.0e-020: 62
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 19263088593
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)