TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adap... 163 2e-071
gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Me... 147 3e-050
gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Me... 147 3e-050
gb|CX606752.1|CX606752 ANR1_4_F09.g1_A002 Anaerobic roots S... 124 6e-039
gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infecte... 138 7e-032
gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infecte... 138 7e-032
gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Me... 137 1e-031
gb|BZ629794.1|BZ629794 ih68e02.g1 WGS-SbicolorF (DH5a methy... 129 4e-029
gb|CW167616.1|CW167616 104_576_11153698_116_36487_033 Sorgh... 129 4e-029
gb|CW246390.1|CW246390 104_707_11221324_116_35085_012 Sorgh... 129 4e-029
gb|CW433408.1|CW433408 fsbb001f148j18k0 Sorghum methylation... 129 4e-029
gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Me... 92 3e-028
gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Me... 92 3e-028
gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2... 125 5e-028
gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/c... 88 6e-027
gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infecte... 92 7e-026
gb|CL188284.1|CL188284 104_404_10901484_116_32447_038 Sorgh... 83 2e-023
gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sor... 110 2e-023
gb|AW287591.2|AW287591 LG1_244_A08.b1_A002 Light Grown 1 (L... 108 7e-023
gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected... 106 3e-022
gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sor... 105 6e-022
gb|CL164957.1|CL164957 104_359_10808265_114_31816_249 Sorgh... 52 2e-021
gb|CL164958.1|CL164958 104_359_10808265_116_31817_249 Sorgh... 52 2e-021
>gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho53a08 5', DNA sequence
Length = 604
Score = 163 bits (351), Expect(2) = 4e-070
Identities = 66/71 (92%), Positives = 68/71 (95%)
Frame = -1 / -2
Query: 533 FYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLR 354
+ + RA PSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLR
Sbjct: 594 YSSDRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLR 415
Query: 353 WKNSHWRNLQV 321
WKNSHWRNLQV
Sbjct: 414 WKNSHWRNLQV 382
Score = 159 bits (341), Expect(2) = 2e-071
Identities = 65/68 (95%), Positives = 65/68 (95%)
Frame = +3 / +1
Query: 318 TNLKVSPMRILPSQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RD 497
T LKVSPMRILP QWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RD
Sbjct: 379 TYLKVSPMRILPPQWI*VANACDRAHVSSYP*ILCLKEHSESHSKGHLCIQSLIVFC*RD 558
Query: 498 DKF*WACP 521
DKF WACP
Sbjct: 559 DKFRWACP 582
Score = 158 bits (339), Expect(2) = 3e-067
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = -3 / -1
Query: 519 GXPIRICHPFSKIQ*GSVYTSVPWNAIQNAL*DRGFRGKKIHGHDHRHWRLRSTAMEEFS 340
G PI ICHPFSKIQ*GSVYTSVPWNAIQNAL*DRGFRGKKIHGHDHRHWRLRSTA+EEFS
Sbjct: 580 GKPIGICHPFSKIQ*GSVYTSVPWNAIQNAL*DRGFRGKKIHGHDHRHWRLRSTAVEEFS 401
Query: 339 LAKPSG 322
LAKPSG
Sbjct: 400 LAKPSG 383
Score = 154 bits (331), Expect(2) = 9e-063
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = +1 / +2
Query: 322 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 501
T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT
Sbjct: 383 T*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSKSILNRIPRDTCVYRALLYFAKGMT 562
Query: 502 NSDGXAL 522
NSDG AL
Sbjct: 563 NSDGLAL 583
Score = 154 bits (330), Expect = 2e-036
Identities = 65/75 (86%), Positives = 67/75 (89%)
Frame = -2 / -3
Query: 520 GXAHQNLSSL*QNTIRLCIHKCPLECDSECSLRQRIQG*EDTWARSQALAT*IHCDGRIL 341
G AH+NLSSL*QNTIRLCIHKCPLECDSECSLRQRIQG*EDTWARSQALAT*IHC GRIL
Sbjct: 581 GQAHRNLSSL*QNTIRLCIHKCPLECDSECSLRQRIQG*EDTWARSQALAT*IHCGGRIL 402
Query: 340 IGETFRLVGMNRLHL 296
IGETFR V H+
Sbjct: 401 IGETFRYVVQLPFHV 357
Score = 149 bits (319), Expect(2) = 7e-054
Identities = 63/66 (95%), Positives = 63/66 (95%)
Frame = +2 / +3
Query: 323 PEGFANENSSIAVDLSRQCL*SCPCIFLPLNPLSQRAF*IAFQGTLVYTEPYCILLKG*Q 502
PEGFANENSS AVDLSRQCL*SCPCIFLPLNPLSQRAF*IAFQGTLVYTEPYCILLKG*Q
Sbjct: 384 PEGFANENSSTAVDLSRQCL*SCPCIFLPLNPLSQRAF*IAFQGTLVYTEPYCILLKG*Q 563
Query: 503 ILMGXP 520
I MG P
Sbjct: 564 IPMGLP 581
Score = 133 bits (284), Expect(2) = 2e-071
Identities = 46/52 (88%), Positives = 47/52 (90%)
Frame = +3 / +3
Query: 174 VFIIWHSCLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCSRFIPTNLK 329
+ WHS LLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCS FIPTNLK
Sbjct: 6 IICTWHSWLLRKLWPEKWWWAYIKWCSNWFNLPYRNTGAPLRCS*FIPTNLK 161
Score = 124 bits (265), Expect(2) = 4e-070
Identities = 48/52 (92%), Positives = 48/52 (92%)
Frame = -1 / -3
Query: 329 LQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMPDDEN 174
LQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQ GMP N
Sbjct: 161 LQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQPGMPGTNN 6
Score = 120 bits (256), Expect(2) = 3e-067
Identities = 46/49 (93%), Positives = 48/49 (97%)
Frame = -2 / -1
Query: 328 FRLVGMNRLHLRGAPVFRYGRLNQLLHHFIYAHHHFSGQSFLSKQECQM 182
FRLVGMN+LHLRGAPVFRYGRLNQLLHHFIYAHHHFSGQSFLS QECQ+
Sbjct: 160 FRLVGMNQLHLRGAPVFRYGRLNQLLHHFIYAHHHFSGQSFLSSQECQV 14
Score = 108 bits (231), Expect(2) = 9e-063
Identities = 46/47 (97%), Positives = 46/47 (97%)
Frame = +1 / +1
Query: 187 GIPACLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT* 327
GIP CLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT*
Sbjct: 19 GIPGCLGSFGLKNGGGHI*NGVATGSISHIETRVRLSDAVDSSQPT* 159
Score = 84.5 bits (178), Expect(2) = 7e-054
Identities = 35/36 (97%), Positives = 35/36 (97%)
Frame = +2 / +2
Query: 221 KMVVGIYKMV*QLVQSPISKHGCASQMQSIHPNQPE 328
KMVVGIYKMV*QLVQSPISKHGCASQMQ IHPNQPE
Sbjct: 53 KMVVGIYKMV*QLVQSPISKHGCASQMQLIHPNQPE 160
>gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 512
Score = 147 bits (316), Expect(2) = 3e-050
Identities = 54/73 (73%), Positives = 67/73 (91%)
Frame = -1 / +3
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTITGI DLDP+RW NSHWR+++VGWDESTA E++
Sbjct: 258 HTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEKQ 437
Query: 287 TRVSIWEIEPVAT 249
RVS+WEIEP+ T
Sbjct: 438 PRVSLWEIEPLTT 476
Score = 77.6 bits (163), Expect(2) = 2e-021
Identities = 42/79 (53%), Positives = 50/79 (63%)
Frame = +1 / -2
Query: 250 VATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSK 429
V GSIS +T S AVDSS PT RQ EF R+GS+S +PVIVPM LT +SSVSK
Sbjct: 475 VVNGSISQRDTLGCFSPAVDSSHPTFTERQCEFGQRTGSRSLIPVIVPM*RLTLDSSVSK 296
Query: 430 SILNRIPRDTCVYRALLYF 486
SI R+P D V+ L +
Sbjct: 295 SIRKRMPTDIRVWYTALTY 239
Score = 72.1 bits (151), Expect(2) = 3e-050
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAA+ + FTIFYNPRA P EFVIP+AKY KA+Y
Sbjct: 96 MPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPCEFVIPMAKYVKAVY 257
Score = 46.0 bits (94), Expect(2) = 2e-021
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +1 / -2
Query: 466 YRALLYFAKGMTNSDGXALGL*KIVNGL 549
Y AL Y A GMTNS G ALGL*KIVN L
Sbjct: 256 YTALTYLAMGMTNSQGLALGL*KIVNRL 173
>gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 147 bits (316), Expect(2) = 3e-050
Identities = 54/73 (73%), Positives = 67/73 (91%)
Frame = -1 / +3
Query: 467 YTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERR 288
+T++S+GMRFRMLFETE+S VRRYMGTITGI DLDP+RW NSHWR+++VGWDESTA E++
Sbjct: 258 HTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEKQ 437
Query: 287 TRVSIWEIEPVAT 249
RVS+WEIEP+ T
Sbjct: 438 PRVSLWEIEPLTT 476
Score = 77.6 bits (163), Expect(2) = 2e-021
Identities = 42/79 (53%), Positives = 50/79 (63%)
Frame = +1 / -2
Query: 250 VATGSISHIETRVRLSDAVDSSQPT*RFRQ*EFFHRSGSKSPMPVIVPMYLLTPESSVSK 429
V GSIS +T S AVDSS PT RQ EF R+GS+S +PVIVPM LT +SSVSK
Sbjct: 475 VVNGSISQRDTLGCFSPAVDSSHPTFTERQCEFGQRTGSRSLIPVIVPM*RLTLDSSVSK 296
Query: 430 SILNRIPRDTCVYRALLYF 486
SI R+P D V+ L +
Sbjct: 295 SIRKRMPTDIRVWYTALTY 239
Score = 72.1 bits (151), Expect(2) = 3e-050
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALY 465
+ SS S M + AA HAA+ + FTIFYNPRA P EFVIP+AKY KA+Y
Sbjct: 96 MPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPCEFVIPMAKYVKAVY 257
Score = 46.0 bits (94), Expect(2) = 2e-021
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +1 / -2
Query: 466 YRALLYFAKGMTNSDGXALGL*KIVNGL 549
Y AL Y A GMTNS G ALGL*KIVN L
Sbjct: 256 YTALTYLAMGMTNSQGLALGL*KIVNRL 173
>gb|CX606752.1|CX606752 ANR1_4_F09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_4_F09_A002 5', mRNA sequence
Length = 801
Score = 124 bits (265), Expect(3) = 6e-039
Identities = 43/70 (61%), Positives = 55/70 (78%)
Frame = -1 / +3
Query: 383 TGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLP 204
TGI D+DP+RWKNS WRN+QV WDE+ +ERRTRVS+WE+EPV PF+I P P F K P
Sbjct: 3 TGISDMDPVRWKNSQWRNIQVAWDEAAPTERRTRVSLWEVEPVIAPFFIYPSPLFTAKRP 182
Query: 203 KQAGMPDDEN 174
+Q G+ DD++
Sbjct: 183 RQPGITDDDS 212
Score = 39.1 bits (79), Expect(3) = 6e-039
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -1 / +3
Query: 107 QNALFPGLSLVQWMAMQQNPQM 42
QN+L PGLSLVQWM MQQ +
Sbjct: 288 QNSLVPGLSLVQWMNMQQTSSL 353
Score = 36.8 bits (74), Expect(3) = 6e-039
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1 / +3
Query: 185 DDENEVESAFKRAMPWLADDFALKDV 108
DD +E+++ FKR MPW ++ KD+
Sbjct: 204 DDSSEMDTLFKRTMPWFGEEIGKKDL 281
>gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 138 bits (296), Expect = 7e-032
Identities = 56/134 (41%), Positives = 80/134 (59%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
+ SS S M + A HA FT++Y PR P+EFV+ +Y ++L S+G
Sbjct: 18 IPSSVISSHSMHLGVLATAWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIG 197
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRF+M FE E++ +R+ GTI GIG DP W +S WR+L+V WDE+++ R RVS W+
Sbjct: 198 MRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLKVRWDEASSVPRPERVSPWQ 377
Query: 266 IEPVATPFYICPPP 225
IEP +P + P P
Sbjct: 378 IEPAISPSPVNPLP 419
>gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 432
Score = 138 bits (296), Expect = 7e-032
Identities = 56/134 (41%), Positives = 80/134 (59%)
Frame = -1 / +3
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
+ SS S M + A HA FT++Y PR P+EFV+ +Y ++L S+G
Sbjct: 18 IPSSVISSHSMHLGVLATAWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIG 197
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWE 267
MRF+M FE E++ +R+ GTI GIG DP W +S WR+L+V WDE+++ R RVS W+
Sbjct: 198 MRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLKVRWDEASSVPRPERVSPWQ 377
Query: 266 IEPVATPFYICPPP 225
IEP +P + P P
Sbjct: 378 IEPAISPSPVNPLP 419
>gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 521
Score = 137 bits (294), Expect = 1e-031
Identities = 57/140 (40%), Positives = 80/140 (57%)
Frame = -1 / +2
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR P+EFV+P +Y ++L +GMR
Sbjct: 41 SSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMR 220
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI G D + W S WR L+V WDE+++ R RVS W+IE
Sbjct: 221 FKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIE 400
Query: 260 PVATPFYICPPPFFRPKLPK 201
P +P + P P RPK P+
Sbjct: 401 PAVSPPPVNPLPVHRPKRPR 460
>gb|BZ629794.1|BZ629794 ih68e02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih68e02 5', DNA sequence
Length = 487
Score = 129 bits (276), Expect = 4e-029
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +3 / -3
Query: 18 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQ +VISKPWHRSFESTLNL FII
Sbjct: 326 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQGKVISKPWHRSFESTLNLAFII 159
Score = 125 bits (268), Expect = 5e-028
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = -3 / +2
Query: 180 *KRG*ECFQKSDAMAC**LRSERCPKCIISRPEPSSMDGYAAKSSDASNCFPCCT 16
*KRG*ECFQKSDAMAC**L ERCPKCIISRPEPSSMDGYAAKSSDASNC PCCT
Sbjct: 164 *KRG*ECFQKSDAMAC**LCPERCPKCIISRPEPSSMDGYAAKSSDASNCCPCCT 328
Score = 125 bits (267), Expect = 7e-028
Identities = 53/56 (94%), Positives = 55/56 (98%)
Frame = +2 / -2
Query: 17 VQQGKQLLASEDFAA*PSIELGSGLEIMHFGHLSERSHQQAMASLF*KHSQPRFHH 184
VQQG+QLLASEDFAA*PSIELGSGLEIMHFGHLS +SHQQAMASLF*KHSQPRFHH
Sbjct: 327 VQQGQQLLASEDFAA*PSIELGSGLEIMHFGHLSGQSHQQAMASLF*KHSQPRFHH 160
Score = 119 bits (255), Expect = 3e-026
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -1 / +3
Query: 200 QAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 39
+ + DDE+EVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML
Sbjct: 144 KTNLADDESEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 305
Score = 111 bits (238), Expect = 7e-024
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1 / -1
Query: 40 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTS SSS
Sbjct: 304 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSLSSS 158
>gb|CW167616.1|CW167616 104_576_11153698_116_36487_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153698, DNA
sequence
Length = 658
Score = 129 bits (276), Expect = 4e-029
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +3 / -2
Query: 18 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQ +VISKPWHRSFESTLNL FII
Sbjct: 477 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQGKVISKPWHRSFESTLNLAFII 310
Score = 125 bits (268), Expect = 5e-028
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = -3 / +3
Query: 180 *KRG*ECFQKSDAMAC**LRSERCPKCIISRPEPSSMDGYAAKSSDASNCFPCCT 16
*KRG*ECFQKSDAMAC**L ERCPKCIISRPEPSSMDGYAAKSSDASNC PCCT
Sbjct: 315 *KRG*ECFQKSDAMAC**LCPERCPKCIISRPEPSSMDGYAAKSSDASNCCPCCT 479
Score = 125 bits (267), Expect = 7e-028
Identities = 53/56 (94%), Positives = 55/56 (98%)
Frame = +2 / -1
Query: 17 VQQGKQLLASEDFAA*PSIELGSGLEIMHFGHLSERSHQQAMASLF*KHSQPRFHH 184
VQQG+QLLASEDFAA*PSIELGSGLEIMHFGHLS +SHQQAMASLF*KHSQPRFHH
Sbjct: 478 VQQGQQLLASEDFAA*PSIELGSGLEIMHFGHLSGQSHQQAMASLF*KHSQPRFHH 311
Score = 119 bits (255), Expect = 3e-026
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -1 / +1
Query: 200 QAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 39
+ + DDE+EVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML
Sbjct: 295 KTNLADDESEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 456
Score = 111 bits (238), Expect = 7e-024
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1 / -3
Query: 40 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTS SSS
Sbjct: 455 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSLSSS 309
>gb|CW246390.1|CW246390 104_707_11221324_116_35085_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221324, DNA
sequence
Length = 703
Score = 129 bits (276), Expect = 4e-029
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +3 / -3
Query: 18 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQ +VISKPWHRSFESTLNL FII
Sbjct: 344 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQGKVISKPWHRSFESTLNLAFII 177
Score = 125 bits (268), Expect = 5e-028
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = -3 / +2
Query: 180 *KRG*ECFQKSDAMAC**LRSERCPKCIISRPEPSSMDGYAAKSSDASNCFPCCT 16
*KRG*ECFQKSDAMAC**L ERCPKCIISRPEPSSMDGYAAKSSDASNC PCCT
Sbjct: 182 *KRG*ECFQKSDAMAC**LCPERCPKCIISRPEPSSMDGYAAKSSDASNCCPCCT 346
Score = 125 bits (267), Expect = 7e-028
Identities = 53/56 (94%), Positives = 55/56 (98%)
Frame = +2 / -2
Query: 17 VQQGKQLLASEDFAA*PSIELGSGLEIMHFGHLSERSHQQAMASLF*KHSQPRFHH 184
VQQG+QLLASEDFAA*PSIELGSGLEIMHFGHLS +SHQQAMASLF*KHSQPRFHH
Sbjct: 345 VQQGQQLLASEDFAA*PSIELGSGLEIMHFGHLSGQSHQQAMASLF*KHSQPRFHH 178
Score = 119 bits (255), Expect = 3e-026
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -1 / +3
Query: 200 QAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 39
+ + DDE+EVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML
Sbjct: 162 KTNLADDESEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 323
Score = 111 bits (238), Expect = 7e-024
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1 / -1
Query: 40 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTS SSS
Sbjct: 322 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSLSSS 176
>gb|CW433408.1|CW433408 fsbb001f148j18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j18, DNA
sequence
Length = 748
Score = 129 bits (276), Expect = 4e-029
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +3 / -2
Query: 18 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQSEVISKPWHRSFESTLNLVFII 185
YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQ +VISKPWHRSFESTLNL FII
Sbjct: 216 YSRGSSC*HLRILLHSHPLN*AQAWK*CILDIFQGKVISKPWHRSFESTLNLAFII 49
Score = 125 bits (268), Expect = 5e-028
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = -3 / +3
Query: 180 *KRG*ECFQKSDAMAC**LRSERCPKCIISRPEPSSMDGYAAKSSDASNCFPCCT 16
*KRG*ECFQKSDAMAC**L ERCPKCIISRPEPSSMDGYAAKSSDASNC PCCT
Sbjct: 54 *KRG*ECFQKSDAMAC**LCPERCPKCIISRPEPSSMDGYAAKSSDASNCCPCCT 218
Score = 125 bits (267), Expect = 7e-028
Identities = 53/56 (94%), Positives = 55/56 (98%)
Frame = +2 / -1
Query: 17 VQQGKQLLASEDFAA*PSIELGSGLEIMHFGHLSERSHQQAMASLF*KHSQPRFHH 184
VQQG+QLLASEDFAA*PSIELGSGLEIMHFGHLS +SHQQAMASLF*KHSQPRFHH
Sbjct: 217 VQQGQQLLASEDFAA*PSIELGSGLEIMHFGHLSGQSHQQAMASLF*KHSQPRFHH 50
Score = 119 bits (255), Expect = 3e-026
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -1 / +1
Query: 200 QAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 39
+ + DDE+EVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML
Sbjct: 34 KTNLADDESEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQWMAMQQNPQML 195
Score = 111 bits (238), Expect = 7e-024
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1 / -3
Query: 40 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSFSSS 186
SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTS SSS
Sbjct: 194 SI*GFCCIAIH*TRLRPGNNAFWTSFRAKSSASHGIALLKALSTSLSSS 48
>gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 583
Score = 91.8 bits (194), Expect(2) = 3e-028
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 40 SSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 219
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LDPL
Sbjct: 220 FRMRFEGEEAPEQRFTGTIVGCENLDPL 303
Score = 54.2 bits (112), Expect(2) = 3e-028
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
W +S WR L+V WDE + R RVS W+IEP ++P P R K P+Q P
Sbjct: 304 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSSRVKRPRQNAPP 471
>gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 555
Score = 91.8 bits (194), Expect(2) = 3e-028
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 40 SSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 219
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LDPL
Sbjct: 220 FRMRFEGEEAPEQRFTGTIVGCENLDPL 303
Score = 54.2 bits (112), Expect(2) = 3e-028
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
W +S WR L+V WDE + R RVS W+IEP ++P P R K P+Q P
Sbjct: 304 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSSRVKRPRQNAPP 471
>gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 125 bits (268), Expect = 5e-028
Identities = 51/125 (40%), Positives = 72/125 (57%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR P+EFV+P +Y ++L +GMR
Sbjct: 168 SSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMR 347
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIE 261
F+M FE E++ +R+ GTI G D + W S WR L+V WDE+++ R RVS W+IE
Sbjct: 348 FKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIE 527
Query: 260 PVATP 246
P +P
Sbjct: 528 PAVSP 542
>gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_B07_A007 5', mRNA sequence
Length = 658
Score = 87.7 bits (185), Expect(2) = 6e-027
Identities = 35/80 (43%), Positives = 49/80 (61%)
Frame = -1 / +2
Query: 596 MXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETE 417
M + A HA FT++Y PR PSEF+IP +Y +++ S+GMRFRM FE E
Sbjct: 17 MHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGE 196
Query: 416 DSGVRRYMGTITGIGDLDPL 357
++ +R+ GTI G +LDPL
Sbjct: 197 EAPEQRFTGTIVGCENLDPL 256
Score = 54.2 bits (112), Expect(2) = 6e-027
Identities = 24/56 (42%), Positives = 31/56 (55%)
Frame = -1 / +2
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQAGMP 186
W +S WR L+V WDE + R RVS W+IEP ++P P R K P+Q P
Sbjct: 257 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSSRVKRPRQNAPP 424
>gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 91.8 bits (194), Expect(2) = 7e-026
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR PSEF+IP +Y +++ S+GMR
Sbjct: 175 SSVISSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMR 354
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPL 357
FRM FE E++ +R+ GTI G +LDPL
Sbjct: 355 FRMRFEGEEAPEQRFTGTIVGCENLDPL 438
Score = 46.4 bits (95), Expect(2) = 7e-026
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = -1 / +1
Query: 353 WKNSHWRNLQVGWDESTASERRTRVSIWEIEPVA 252
W +S WR L+V WDE + R RVS W+IEP +
Sbjct: 439 WPDSSWRYLKVRWDEPSTIPRPDRVSPWKIEPAS 540
>gb|CL188284.1|CL188284 104_404_10901484_116_32447_038 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901484, DNA
sequence
Length = 710
Score = 83.1 bits (175), Expect(2) = 2e-023
Identities = 36/70 (51%), Positives = 40/70 (57%)
Frame = -1 / -3
Query: 401 RYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPF 222
R GTI GI D DP+RW NS WRNLQV WDE ER RVS+W+IE + P
Sbjct: 285 RCTGTIVGISDYDPMRWPNSKWRNLQVEWDEHGYGERPERVSLWDIETPENMVFPSPLNS 106
Query: 221 FRPKLPKQAG 192
R LP AG
Sbjct: 105 KRQCLPSYAG 76
Score = 48.7 bits (100), Expect(2) = 2e-023
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -1 / -2
Query: 485 KYNKALYTQVSLGMRFRMLFETEDSGVRRYM 393
+YNKA Y Q S+GMRF M+FETE+S RR++
Sbjct: 709 RYNKATYLQPSVGMRFAMMFETEESIKRRFV 617
>gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 110 bits (235), Expect = 2e-023
Identities = 44/107 (41%), Positives = 63/107 (58%)
Frame = -1 / +1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLG 447
+ SS S M + A HA FT++Y PR P+EFV+ +Y ++L S+G
Sbjct: 178 IPSSVISSHSMHIGVLATAWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIG 357
Query: 446 MRFRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDES 306
M F+M FE E++ +R+ GTI GIG DP W +S WR+L+V WDE+
Sbjct: 358 MIFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLKVRWDEA 498
>gb|AW287591.2|AW287591 LG1_244_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 299
Score = 108 bits (231), Expect = 7e-023
Identities = 41/93 (44%), Positives = 59/93 (63%)
Frame = -1 / +1
Query: 584 IXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGV 405
+ A HA FT++Y PR P+EFV+ +Y ++L S+GMRF+M FE E++
Sbjct: 19 VLATAWHAVNTGSMFTVYYKPRTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAE 198
Query: 404 RRYMGTITGIGDLDPLRWKNSHWRNLQVGWDES 306
+R+ GTI GIG DP W +S WR+L+V WDE+
Sbjct: 199 QRFTGTIVGIGASDPSGWADSKWRSLKVRWDEA 297
>gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 388
Score = 106 bits (226), Expect = 3e-022
Identities = 43/110 (39%), Positives = 62/110 (56%)
Frame = -1 / +1
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR P+EFV+P +Y ++L +GMR
Sbjct: 58 SSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYTESLKRNYPIGMR 237
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASER 291
F+M FE E++ +R+ GTI G D + W S WR L+V WDE+++ R
Sbjct: 238 FKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASSIPR 387
>gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 105 bits (224), Expect = 6e-022
Identities = 42/107 (39%), Positives = 61/107 (57%)
Frame = -1 / +3
Query: 620 SSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPRAXPSEFVIPLAKYNKALYTQVSLGMR 441
SS S M + A HA FT++Y PR P+EFV+P +Y ++L +GMR
Sbjct: 144 SSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYTESLKRNYPIGMR 323
Query: 440 FRMLFETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTA 300
F+M FE E++ +R+ GTI G D + W S WR L+V WDE+++
Sbjct: 324 FKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLKVRWDEASS 464
>gb|CL164957.1|CL164957 104_359_10808265_114_31816_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808265, DNA
sequence
Length = 739
Score = 51.9 bits (107), Expect(3) = 2e-021
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = -1 / +2
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
+SSS S M + AA HAAAN+ PFTIFYNPR
Sbjct: 266 ISSSVLSSDSMHIGVLAAAAHAAANNSPFTIFYNPR 373
Score = 49.2 bits (101), Expect(3) = 2e-021
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -1 / +3
Query: 461 QVSLGMRFRMLFETEDSGVRRYMGT 387
Q+SLGMRFRM+FETE+ G+RRY G+
Sbjct: 540 QISLGMRFRMMFETEELGMRRYSGS 614
Score = 39.6 bits (80), Expect(3) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1 / +3
Query: 521 RAXPSEFVIPLAKYNKALYT 462
RA P+EFVIP AKY KALY+
Sbjct: 477 RASPTEFVIPFAKYQKALYS 536
>gb|CL164958.1|CL164958 104_359_10808265_116_31817_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808265, DNA
sequence
Length = 730
Score = 51.9 bits (107), Expect(3) = 2e-021
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = -1 / -1
Query: 626 LSSSXXSXXXMXXXIXAAXXHAAANSXPFTIFYNPR 519
+SSS S M + AA HAAAN+ PFTIFYNPR
Sbjct: 481 ISSSVLSSDSMHIGVLAAAAHAAANNSPFTIFYNPR 374
Score = 49.2 bits (101), Expect(3) = 2e-021
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -1 / -2
Query: 461 QVSLGMRFRMLFETEDSGVRRYMGT 387
Q+SLGMRFRM+FETE+ G+RRY G+
Sbjct: 207 QISLGMRFRMMFETEELGMRRYSGS 133
Score = 39.6 bits (80), Expect(3) = 2e-021
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1 / -2
Query: 521 RAXPSEFVIPLAKYNKALYT 462
RA P+EFVIP AKY KALY+
Sbjct: 270 RASPTEFVIPFAKYQKALYS 211
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 776,907,362
Number of Sequences: 832831
Number of extensions: 11548189
Number of successful extensions: 106359
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18545209515
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)