TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfil... 191 2e-048
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 167 2e-041
gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2... 167 2e-041
gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_... 166 6e-041
gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_... 166 6e-041
gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg... 127 4e-029
gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation... 110 4e-024
gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorgh... 107 3e-023
gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorgh... 105 1e-022
gb|BZ341519.1|BZ341519 ic45h08.g1 WGS-SbicolorF (JM107 adap... 88 3e-017
gb|CW047637.1|CW047637 104_285_10512819_115_30217 Sorghum m... 88 3e-017
gb|CW378881.1|CW378881 fsbb001f057n17f0 Sorghum methylation... 88 3e-017
gb|CW378882.1|CW378882 fsbb001f057n17k0 Sorghum methylation... 88 3e-017
gb|CW884310.1|CW884310 Sorghum CISP Intron:I00_X00_F_PRSC1_... 59 1e-008
gb|CW883673.1|CW883673 Sorghum CISP Intron:I00_X00_F_PRSC1_... 59 2e-008
gb|CW440700.1|CW440700 fsbb001f159h14k0 Sorghum methylation... 50 7e-006
gb|CW884582.1|CW884582 Sorghum CISP Intron:I00_X00_F_PRSC1_... 44 6e-004
gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/c... 35 0.17
gb|CL185102.1|CL185102 104_398_10899295_116_32372_018 Sorgh... 32 0.49
gb|CB927932.1|CB927932 ABA1_35_F01.b1_A012 Abscisic acid-tr... 34 0.60
gb|CW192569.1|CW192569 104_615_11179099_116_36773_080 Sorgh... 33 1.1
gb|CW192570.1|CW192570 104_615_11179099_148_36774_080 Sorgh... 33 1.1
gb|CW389757.1|CW389757 fsbb001f075b17k0 Sorghum methylation... 25 1.5
gb|CW299479.1|CW299479 104_782_11463144_116_36235_088 Sorgh... 32 1.6
gb|CW299480.1|CW299480 104_782_11463144_148_36236_088 Sorgh... 32 1.6
gb|CX609983.1|CX609983 ANR1_16_A03.b1_A002 Anaerobic roots ... 25 1.6
gb|CX610173.1|CX610173 ANR1_17_C04.b1_A002 Anaerobic roots ... 25 1.6
gb|CL185101.1|CL185101 104_398_10899295_114_32368_018 Sorgh... 32 2.2
gb|CW267436.1|CW267436 104_737_11400737_116_35289_067 Sorgh... 32 2.2
gb|CW393112.1|CW393112 fsbb001f080a14f0 Sorghum methylation... 32 2.2
gb|BE362452.1|BE362452 DG1_86_F07.g1_A002 Dark Grown 1 (DG1... 32 2.2
gb|CB924836.1|CB924836 ABA1_28_E07.b1_A012 Abscisic acid-tr... 32 2.2
gb|CB926888.1|CB926888 ABA1_11_C01.b1_A012 Abscisic acid-tr... 32 2.2
gb|CW448815.1|CW448815 fsbb001f182j23f0 Sorghum methylation... 25 2.3
gb|CW212286.1|CW212286 104_643_11190943_116_37022_026 Sorgh... 31 3.0
gb|CW263279.1|CW263279 104_731_11230597_148_35217_057 Sorgh... 31 3.0
gb|CW481226.1|CW481226 fsbb001f240k24k0 Sorghum methylation... 31 3.0
gb|CW453700.1|CW453700 fsbb001f197n01f0 Sorghum methylation... 25 5.0
gb|CW315949.1|CW315949 104_807_11472633_148_35844_043 Sorgh... 25 5.1
gb|CW276827.1|CW276827 104_750_11405699_148_35400_038 Sorgh... 25 5.4
gb|CW174736.1|CW174736 104_587_11157566_148_36568_063 Sorgh... 21 5.5
gb|BZ693526.1|BZ693526 SP__Ba0035L15.r SP__Ba Sorghum propi... 30 5.6
gb|CW271589.1|CW271589 104_743_11403078_116_35339_017 Sorgh... 30 5.6
gb|CW432896.1|CW432896 fsbb001f147n18f0 Sorghum methylation... 26 7.2
gb|CW163328.1|CW163328 104_570_11151404_148_36451_066 Sorgh... 30 7.7
gb|BE358492.1|BE358492 DG1_30_E09.b1_A002 Dark Grown 1 (DG1... 30 7.7
gb|BE367061.1|BE367061 PI1_42_H12.g2_A002 Pathogen induced ... 30 7.7
gb|CW162409.1|CW162409 104_569_11150927_148_36439_086 Sorgh... 21 9.9
>gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10512125, DNA sequence
Length = 639
Score = 191 bits (411), Expect = 2e-048
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = -2 / +2
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF
Sbjct: 59 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 238
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLSCYYTTIGFYFST
Sbjct: 239 FRMLSCYYTTIGFYFST 289
Score = 177 bits (380), Expect = 4e-044
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +1 / -3
Query: 19 TEVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHV 198
TEVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAI+ICYLCLKQRYLIET+IPS ANLHV
Sbjct: 286 TEVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAISICYLCLKQRYLIETHIPSLANLHV 107
Query: 199 FMVSNIAFAQCGIESC 246
FMVSNIAF QCGIESC
Sbjct: 106 FMVSNIAFTQCGIESC 59
Score = 176 bits (379), Expect = 6e-044
Identities = 72/77 (93%), Positives = 74/77 (96%)
Frame = -1 / +1
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CRIQFHIA RQCYSP*IHASWQ KGC SQSNISV*GKDSKW+WRT+AEP*HLPARSSL*F
Sbjct: 58 CRIQFHIA*RQCYSP*IHASWQGKGCGSQSNISV*GKDSKWKWRTDAEP*HLPARSSL*F 237
Query: 67 LQDAVLLLHNNWFLLQY 17
LQDAVLLLHNNWFLLQY
Sbjct: 238 LQDAVLLLHNNWFLLQY 288
Score = 169 bits (364), Expect = 7e-042
Identities = 71/76 (93%), Positives = 71/76 (93%)
Frame = +3 / -2
Query: 18 Y*SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLAC 197
Y*SRNQLLCSNKTAS*RNQSDDLAGRCHGSA VRH HLLSLPQTEIFD*D HPF CQLAC
Sbjct: 287 Y*SRNQLLCSNKTAS*RNQSDDLAGRCHGSASVRHFHLLSLPQTEIFD*DPHPFPCQLAC 108
Query: 198 IHGE*HCLRAMWN*IL 245
IHGE*HCL AMWN*IL
Sbjct: 107 IHGE*HCLHAMWN*IL 60
Score = 160 bits (345), Expect = 3e-039
Identities = 71/76 (93%), Positives = 73/76 (96%)
Frame = -3 / +3
Query: 245 QDSIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALIS 66
QDSIPHC KAMLLTMNTCKLA+EGM VSIKYLCLRQR*QM MAN+R*AVTSTG*VIALIS
Sbjct: 60 QDSIPHCVKAMLLTMNTCKLAREGMWVSIKYLCLRQR*QMEMANRR*AVTSTG*VIALIS 239
Query: 65 SGCCLVTTQQLVSTSV 18
SGCCLVTTQQLVSTSV
Sbjct: 240 SGCCLVTTQQLVSTSV 287
Score = 114 bits (243), Expect(2) = 2e-029
Identities = 47/48 (97%), Positives = 47/48 (97%)
Frame = +2 / -1
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
LSVCSP PFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA
Sbjct: 201 LSVCSPFPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 58
Score = 31.8 bits (63), Expect(2) = 2e-029
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2 / -1
Query: 17 VLK*KPIVV**QDSIL 64
VLK*KPIVV**QDSIL
Sbjct: 288 VLK*KPIVV**QDSIL 241
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 167 bits (360), Expect = 2e-041
Identities = 64/77 (83%), Positives = 73/77 (94%)
Frame = -2 / +1
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFN TLR GNVTHHEY+QVGKGRDVGLNQ+S+FEAK+A+GNGEQTLSRD+YRLGHR DF
Sbjct: 217 AGFNCTLRGGNVTHHEYIQVGKGRDVGLNQVSMFEAKVASGNGEQTLSRDVYRLGHRLDF 396
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLS +YTT+GFYF+T
Sbjct: 397 FRMLSFFYTTVGFYFNT 447
Score = 75.3 bits (158), Expect(2) = 4e-014
Identities = 32/48 (66%), Positives = 35/48 (72%)
Frame = +2 / -1
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
L VCSPLP A ASN + L PTSLPLPT +YSW VTLP R V+L PA
Sbjct: 359 LKVCSPLPLATLASNIETWLSPTSLPLPTWIYSWCVTLPPRRVQLKPA 216
Score = 74.8 bits (157), Expect = 2e-013
Identities = 31/74 (41%), Positives = 48/74 (64%)
Frame = +1 / -3
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
E+E+N C+ R+HPEEI+++ PV+++AQ LF IA L K L+E +I +F NL +
Sbjct: 441 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATSNLGFKH*DLVEPHISTFTNLDIL 262
Query: 202 MVSNIAFAQCGIES 243
MV NI + +E+
Sbjct: 261 MVCNITATEGTVET 220
Score = 74.8 bits (157), Expect = 2e-013
Identities = 34/80 (42%), Positives = 45/80 (56%)
Frame = -1 / +3
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
C Q + R CY+P*++ W R C +Q ++V* + WQW TN EP L A + F
Sbjct: 216 CWFQLYPPWR*CYTP*VYPGW*R*RCGAQPGLNV*SQGC*WQW*TNFEPRCLQAGPPIGF 395
Query: 67 LQDAVLLLHNNWFLLQYLPG 8
L DA+ LL+N W L QY G
Sbjct: 396 LPDALFLLYNCWILFQYNDG 455
Score = 47.3 bits (97), Expect = 4e-005
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = -3 / +2
Query: 215 MLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSGCCLVTTQQ 36
ML TM+ +L K M S + CL+ R +AM NK *A TG ISSGC L + Q
Sbjct: 248 MLHTMSISRLVKVEMWGSTRSQCLKPRLLVAMVNKL*AEMFTGWATDWISSGCSLSSIQL 427
Query: 35 LVSTSV 18
L S S+
Sbjct: 428 LDSISI 445
Score = 19.4 bits (36), Expect(2) = 4e-014
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / -1
Query: 17 VLK*KPIVV**QDSI 61
VLK* P VV* ++SI
Sbjct: 446 VLK*NPTVV*KKESI 402
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 167 bits (360), Expect = 2e-041
Identities = 64/77 (83%), Positives = 73/77 (94%)
Frame = -2 / +3
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFN TLR GNVTHHEY+QVGKGRDVGLNQ+S+FEAK+A+GNGEQTLSRD+YRLGHR DF
Sbjct: 117 AGFNCTLRGGNVTHHEYIQVGKGRDVGLNQVSMFEAKVASGNGEQTLSRDVYRLGHRLDF 296
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLS +YTT+GFYF+T
Sbjct: 297 FRMLSFFYTTVGFYFNT 347
Score = 79.0 bits (166), Expect = 1e-014
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = +1 / -2
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
E+E+N C+ R+HPEEI+++ PV+++AQ LF IA L K R L+E +I +F NL +
Sbjct: 341 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATSNLGFKHRDLVEPHISTFTNLDIL 162
Query: 202 MVSNIAFAQCGIES 243
MV NI + +E+
Sbjct: 161 MVCNITATEGTVET 120
Score = 75.3 bits (158), Expect(2) = 3e-014
Identities = 32/48 (66%), Positives = 35/48 (72%)
Frame = +2 / -3
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
L VCSPLP A ASN + L PTSLPLPT +YSW VTLP R V+L PA
Sbjct: 259 LKVCSPLPLATLASNIETWLSPTSLPLPTWIYSWCVTLPPRRVQLKPA 116
Score = 73.5 bits (154), Expect = 6e-013
Identities = 34/80 (42%), Positives = 44/80 (55%)
Frame = -1 / +2
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
C Q + R CY+P*++ W R C +Q + V* + WQW TN EP L A + F
Sbjct: 116 CWFQLYPPWR*CYTP*VYPGW*R*RCGAQPGLYV*SQGC*WQW*TNFEPRCLQAGPPIGF 295
Query: 67 LQDAVLLLHNNWFLLQYLPG 8
L DA+ LL+N W L QY G
Sbjct: 296 LPDALFLLYNCWILFQYNDG 355
Score = 50.1 bits (103), Expect = 7e-006
Identities = 30/66 (45%), Positives = 37/66 (56%)
Frame = -3 / +1
Query: 215 MLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSGCCLVTTQQ 36
ML TM+ +L K M S + LCL+ R +AM NK *A TG ISSGC L + Q
Sbjct: 148 MLHTMSISRLVKVEMWGSTRSLCLKPRLLVAMVNKL*AEMFTGWATDWISSGCSLSSIQL 327
Query: 35 LVSTSV 18
L S S+
Sbjct: 328 LDSISI 345
Score = 19.4 bits (36), Expect(2) = 3e-014
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / -3
Query: 17 VLK*KPIVV**QDSI 61
VLK* P VV* ++SI
Sbjct: 346 VLK*NPTVV*KKESI 302
>gb|CW883674.1|CW883674 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_BTXX BTXX Sorghum
bicolor genomic, DNA sequence
Length = 509
Score = 166 bits (357), Expect = 6e-041
Identities = 63/76 (82%), Positives = 73/76 (96%)
Frame = -2 / +1
Query: 243 GFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFF 64
GFNSTLR+GNVTHHEY+Q+GKGRDVG+NQIS FEAK+ANGNGEQTL RDIYRLGHRFDF+
Sbjct: 64 GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDIYRLGHRFDFY 243
Query: 63 RMLSCYYTTIGFYFST 16
RMLS Y+TT+GFYF++
Sbjct: 244 RMLSLYFTTVGFYFNS 291
Score = 80.8 bits (170), Expect = 4e-015
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +1 / -3
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
EVE NC + RQHP EIK+++* +++T LF I++C+L LK YL+ + I FA L+VF
Sbjct: 285 EVEANCGKIQRQHPVEIKSVS*SINITT*CLFTISVCHLGLKVGYLVHSNITPFAQLYVF 106
Query: 202 MVSNIAFAQCGIE 240
M+ NI+ Q IE
Sbjct: 105 MMRNISLTQG*IE 67
Score = 80.8 bits (170), Expect = 4e-015
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = -1 / +3
Query: 244 RIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*FL 65
R+QF+ A R+CY+ *IH QR C ++ NI +*G+ K +W TN *+L R+ +*FL
Sbjct: 63 RVQFNPASRKCYAS*IHTIGQRA*CWNEPNIQL*GQGGKRKW*TNIMS*YLSTRTQI*FL 242
Query: 64 QDAVLLLHNNWFLLQ 20
QDAV + +++W LLQ
Sbjct: 243 QDAVSVFYHSWLLLQ 287
Score = 68.0 bits (142), Expect(2) = 9e-013
Identities = 30/46 (65%), Positives = 31/46 (67%)
Frame = +2 / -1
Query: 107 SVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNP 244
+VCSP PFA AS DI PTS PLP CMYS VT P R VELNP
Sbjct: 200 NVCSPFPFATLASKLDIWFIPTSRPLPNCMYS*CVTFP*RRVELNP 63
Score = 60.6 bits (126), Expect = 4e-009
Identities = 35/76 (46%), Positives = 41/76 (53%)
Frame = +3 / -2
Query: 18 Y*SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLAC 197
Y*SR+QL + +TAS RNQ L + H FV H L PQ+ IF H LC + C
Sbjct: 289 Y*SRSQLW*NTETASCRNQICVLVDKYHDIMFVHHFRLPPWPQSWIFGSFQHHALCPIVC 110
Query: 198 IHGE*HCLRAMWN*IL 245
IH *H L A N* L
Sbjct: 109 IHDA*HFLDAGLN*TL 62
Score = 58.8 bits (122), Expect = 2e-008
Identities = 35/74 (47%), Positives = 37/74 (50%)
Frame = -3 / +2
Query: 239 SIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSG 60
SI C K ML MNT AK M KY LR R Q M NK V * LIS+G
Sbjct: 68 SIQPCVKEMLRIMNTYNWAKGVMLE*TKYPTLRPRWQTEMVNKHYVVIFID*DTDLISTG 247
Query: 59 CCLVTTQQLVSTSV 18
CCL QL STS+
Sbjct: 248 CCLCILPQLASTSI 289
Score = 21.7 bits (41), Expect(2) = 9e-013
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / -1
Query: 17 VLK*KPIVV**QDSIL 64
+LK*KP VV +DSIL
Sbjct: 290 LLK*KPTVVKYRDSIL 243
>gb|CW884311.1|CW884311 Sorghum CISP Intron:I00_X00_F_PRSC1_002_SORG_IS18 IS18 Sorghum
bicolor genomic, DNA sequence
Length = 501
Score = 166 bits (357), Expect = 6e-041
Identities = 63/76 (82%), Positives = 73/76 (96%)
Frame = -2 / +2
Query: 243 GFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFF 64
GFNSTLR+GNVTHHEY+Q+GKGRDVG+NQIS FEAK+ANGNGEQTL RDIYRLGHRFDF+
Sbjct: 56 GFNSTLRQGNVTHHEYIQLGKGRDVGMNQISNFEAKVANGNGEQTLCRDIYRLGHRFDFY 235
Query: 63 RMLSCYYTTIGFYFST 16
RMLS Y+TT+GFYF++
Sbjct: 236 RMLSLYFTTVGFYFNS 283
Score = 80.8 bits (170), Expect = 4e-015
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = -1 / +1
Query: 244 RIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*FL 65
R+QF+ A R+CY+ *IH QR C ++ NI +*G+ K +W TN *+L R+ +*FL
Sbjct: 55 RVQFNPASRKCYAS*IHTIGQRA*CWNEPNIKL*GQGGKRKW*TNIMS*YLSTRTQI*FL 234
Query: 64 QDAVLLLHNNWFLLQ 20
QDAV + +++W LLQ
Sbjct: 235 QDAVSVFYHSWLLLQ 279
Score = 79.9 bits (168), Expect = 7e-015
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +1 / -3
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
EVE NC + RQHP EIK+++* +++T LF I++C+L LK YL+ + I FA L+VF
Sbjct: 277 EVEANCGKIQRQHPVEIKSVS*SINITT*CLFTISVCHLGLKV*YLVHSNITPFAQLYVF 98
Query: 202 MVSNIAFAQCGIE 240
M+ NI+ Q IE
Sbjct: 97 MMRNISLTQG*IE 59
Score = 67.5 bits (141), Expect(2) = 1e-012
Identities = 30/46 (65%), Positives = 31/46 (67%)
Frame = +2 / -1
Query: 107 SVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNP 244
+VCSP PFA AS DI PTS PLP CMYS VT P R VELNP
Sbjct: 192 NVCSPFPFATLASKFDIWFIPTSRPLPNCMYS*CVTFP*RRVELNP 55
Score = 60.6 bits (126), Expect = 4e-009
Identities = 35/76 (46%), Positives = 41/76 (53%)
Frame = +3 / -2
Query: 18 Y*SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLAC 197
Y*SR+QL + +TAS RNQ L + H FV H L PQ+ IF H LC + C
Sbjct: 281 Y*SRSQLW*NTETASCRNQICVLVDKYHDIMFVHHFRLPPWPQSLIFGSFQHHALCPIVC 102
Query: 198 IHGE*HCLRAMWN*IL 245
IH *H L A N* L
Sbjct: 101 IHDA*HFLDAGLN*TL 54
Score = 59.3 bits (123), Expect = 1e-008
Identities = 35/74 (47%), Positives = 37/74 (50%)
Frame = -3 / +3
Query: 239 SIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSG 60
SI C K ML MNT AK M KY LR R Q M NK V * LIS+G
Sbjct: 60 SIQPCVKEMLRIMNTYNWAKGVMLE*TKYQTLRPRWQTEMVNKHYVVIFID*DTDLISTG 239
Query: 59 CCLVTTQQLVSTSV 18
CCL QL STS+
Sbjct: 240 CCLCILPQLASTSI 281
Score = 21.7 bits (41), Expect(2) = 1e-012
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / -1
Query: 17 VLK*KPIVV**QDSIL 64
+LK*KP VV +DSIL
Sbjct: 282 LLK*KPTVVKYRDSIL 235
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 528
Score = 127 bits (271), Expect = 4e-029
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = -2 / +3
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLR+G +THHEY+QVGKGRDVGLNQI+LFE K+A GNGEQ LSRDIYRLG FDF
Sbjct: 345 AGFNSTLRQGCITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDF 524
Query: 66 F 64
F
Sbjct: 525 F 527
Score = 62.5 bits (130), Expect = 1e-009
Identities = 31/48 (64%), Positives = 33/48 (68%)
Frame = +2 / -3
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
L CSP P A F S I*L PTSLPLPT +YS *V P R+VELNPA
Sbjct: 487 LRTCSPFPPATFPSKSAI*LSPTSLPLPT*IYS**VMHP*RSVELNPA 344
Score = 51.9 bits (107), Expect = 2e-006
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = -1 / +2
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL* 71
CRIQ + A R S *+++ WQR GC + S+ ++* K W+W T++ P H+ R++ *
Sbjct: 344 CRIQLNAASRMHNSS*VYSGWQR*GCWT*SDCTL*RKSCWWKW*TSS*PRHI*TRTTF* 520
Score = 50.6 bits (104), Expect = 5e-006
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +1 / -2
Query: 64 EEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVFMVSNIAFAQCGIES 243
E++K ++ + V+A+ LF I+ K+ LI++ IP+FANL++ M+S + Q +ES
Sbjct: 527 EKVKKLSESIYVSAKNLFTISTSNFSFKECNLIKSNIPTFANLNILMMSYASLTQR*VES 348
Query: 244 C 246
C
Sbjct: 347 C 345
Score = 31.3 bits (62), Expect = 3.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3 / +1
Query: 245 QDSIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANK 111
QDS C K L M+ +LAK GM I+ L+++ + M NK
Sbjct: 346 QDSTQRCVKDA*LIMSIFRLAKVGMLDLIRLHSLKEKLLVEMVNK 480
Score = 30.9 bits (61), Expect = 4.1
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = +3 / -1
Query: 96 CHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLACIHGE*HCLRAMWN*IL 245
C G V H H Q D* HP+LCQ H E L A +*IL
Sbjct: 495 CLG*ELVHHFHQQLFLQRVQSD*VQHPYLCQPEYTHDELCILDAALS*IL 346
>gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229a03, DNA
sequence
Length = 646
Score = 110 bits (235), Expect = 4e-024
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = -2 / +3
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDI 94
+GFNSTLR GNVTHHEY+QVGKGRDVGLNQISLFEAK+A GNGEQ LSRDI
Sbjct: 492 SGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQILSRDI 644
Score = 66.1 bits (138), Expect = 1e-010
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +2 / -1
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNP 244
LS+CSP P A AS R+I*LRPTS P PT MYS VT P VEL P
Sbjct: 634 LSICSPFPQATLASKREI*LRPTSRPFPTWMYS*WVTFPLLRVELKP 494
Score = 46.0 bits (94), Expect = 1e-004
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = -1 / +2
Query: 244 RIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HL 92
R+Q +R+C+ *+H S +R CRSQSN S+*G+ +W + + +L
Sbjct: 494 RLQLDSKKRKCHPS*VHPSGERA*CRSQSNFSL*GQSCLRKWGADTQQRYL 646
Score = 40.5 bits (82), Expect = 0.005
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1 / -3
Query: 94 DVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVFMVSNIAFAQCGIES 243
D++A+ L I+ LK+R LIETYI F +L V M+ +I+ + +E+
Sbjct: 644 DISAEYLLPISASNFGLKERNLIETYITPFPHLDVLMMGDISSS*SRVEA 495
Score = 35.0 bits (70), Expect = 0.23
Identities = 16/27 (59%), Positives = 16/27 (59%)
Frame = +3 / -2
Query: 141 PQTEIFD*DLHPFLCQLACIHGE*HCL 221
PQ E FD*DLH L L C H *H L
Sbjct: 597 PQREKFD*DLHHALSPLGCTHDG*HFL 517
>gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 656
Score = 107 bits (229), Expect = 3e-023
Identities = 39/51 (76%), Positives = 48/51 (94%)
Frame = -2 / -2
Query: 168 GLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
G+NQ+S+FEAK+ +GNGEQTLSRD+YRLGHR DFFRMLS +YTT+GFYF+T
Sbjct: 655 GVNQVSMFEAKVGSGNGEQTLSRDVYRLGHRLDFFRMLSFFYTTVGFYFNT 503
Score = 52.8 bits (109), Expect = 1e-006
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +1 / +2
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIE 165
E+E+N C+ R+HPEEI+++ PV+++AQ LF IA L K L++
Sbjct: 509 EIESNSCIEEREHPEEIQSVAQPVNISAQSLFTIATTNLGFKH*DLVD 652
Score = 51.0 bits (105), Expect = 3e-006
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = -1 / -1
Query: 163 QSNISV*GKDSKWQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFLLQYLPG 8
Q ++V* + WQW TN EP L A + FL DA+ LL+N W L QY G
Sbjct: 650 QPGLNV*SQGW*WQW*TNFEPRCLQAGPPIGFLPDALFLLYNCWILFQYNDG 495
Score = 38.2 bits (77), Expect = 0.025
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = -3 / -3
Query: 164 SIKYLCLRQR*QMAMANKR*AVTSTG*VIALISSGCCLVTTQQLVSTSV 18
S + CL+ R +AM NK *A TG ISSGC L + Q L S S+
Sbjct: 651 STRSQCLKPRLVVAMVNKL*AEMFTGWATDWISSGCSLSSIQLLDSISI 505
Score = 28.1 bits (55), Expect(2) = 2.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2 / +3
Query: 104 LSVCSPLPFAIFASNRDI*LRP 169
L VCSPLP ASN + L P
Sbjct: 591 LKVCSPLPLPTLASNIETWLTP 656
Score = 19.4 bits (36), Expect(2) = 2.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 17 VLK*KPIVV**QDSI 61
VLK* P VV* ++SI
Sbjct: 504 VLK*NPTVV*KKESI 548
>gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220201, DNA
sequence
Length = 699
Score = 105 bits (225), Expect = 1e-022
Identities = 40/51 (78%), Positives = 47/51 (92%)
Frame = -2 / -1
Query: 168 GLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
GL QIS FEAK+ANGN EQT+SRDI+RLG RFDFFRMLSCY+TT+GFYF++
Sbjct: 687 GLTQISKFEAKVANGNSEQTISRDIHRLGRRFDFFRMLSCYFTTVGFYFNS 535
Score = 56.5 bits (117), Expect = 8e-008
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +1 / +1
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIET 168
+V+++CC + +HPEEIK+ T*PV++T L IAIC+ K YL +T
Sbjct: 541 KVKSHCCKIA*KHPEEIKSPT*PVNITTDCLLTIAICHFSFKF*YLGKT 687
Score = 46.4 bits (95), Expect = 8e-005
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = -1 / -3
Query: 166 SQSNISV*GKDSKWQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFLL 23
S +I +* KWQ N + *+ PARS++*FLQDA +L +N+ LL
Sbjct: 685 SYPDIKI*S*SGKWQ**ANNQS*YSPARSAI*FLQDAFMLFYNSGILL 542
Score = 43.7 bits (89), Expect = 6e-004
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +2 / +2
Query: 14 QVLK*KPIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRP 169
++LK* P VV * +SIL L VCS LPFA ASN DI +RP
Sbjct: 533 RLLK*NPTVVK*HESILKKSNRRPSR*ISRLIVCSLLPFATLASNFDIWVRP 688
Score = 41.4 bits (84), Expect = 0.003
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3 / +3
Query: 18 Y*SRNQLLCSNKTAS*RNQSDDLAGRCHGSAFVRHCHL 131
Y*S+ LL ++ AS*RNQ DLAG H F +CHL
Sbjct: 537 Y*SKIPLL*NSMKAS*RNQIADLAGEYHD*LFAHYCHL 650
Score = 34.5 bits (69), Expect = 0.32
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -3 / -2
Query: 158 KYLCLRQR*QMAMANKR*AVTSTG*VIALISSGCCLVTTQQ 36
+Y L+ + QMA+ +K+ V TG*V LISSGC QQ
Sbjct: 677 RYQNLKLKWQMAIVSKQSVVIFTG*VGDLISSGCFHAILQQ 555
>gb|BZ341519.1|BZ341519 ic45h08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic45h08 5', DNA sequence
Length = 728
Score = 87.7 bits (185), Expect = 3e-017
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = -2 / +2
Query: 132 ANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
A GNGEQ LSRDIYRLGHRFDFFRMLSCY+TT+GFY S+
Sbjct: 188 ACGNGEQVLSRDIYRLGHRFDFFRMLSCYFTTVGFYISS 304
Score = 45.1 bits (92), Expect = 2e-004
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1 / -2
Query: 25 VETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIA 126
++ N C + R+H EE+KAMT PVD++A+ L I+
Sbjct: 295 IKPNSCKIARKHSEEVKAMTEPVDISAEYLLPIS 194
Score = 38.2 bits (77), Expect = 0.025
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1 / +1
Query: 127 WQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFL 26
W+W + + +L ARSSL* L +A +L +N W L
Sbjct: 193 WKWGASTQQRYLQARSSL*LLPNAFVLFYNCWVL 294
>gb|CW047637.1|CW047637 104_285_10512819_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512819, DNA
sequence
Length = 504
Score = 87.7 bits (185), Expect = 3e-017
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = -2 / +2
Query: 132 ANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
A GNGEQ LSRDIYRLGHRFDFFRMLSCY+TT+GFY S+
Sbjct: 197 ACGNGEQVLSRDIYRLGHRFDFFRMLSCYFTTVGFYISS 313
Score = 45.1 bits (92), Expect = 2e-004
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1 / -3
Query: 25 VETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIA 126
++ N C + R+H EE+KAMT PVD++A+ L I+
Sbjct: 304 IKPNSCKIARKHSEEVKAMTEPVDISAEYLLPIS 203
Score = 38.2 bits (77), Expect = 0.025
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1 / +1
Query: 127 WQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFL 26
W+W + + +L ARSSL* L +A +L +N W L
Sbjct: 202 WKWGASTQQRYLQARSSL*LLPNAFVLFYNCWVL 303
>gb|CW378881.1|CW378881 fsbb001f057n17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057n17, DNA
sequence
Length = 812
Score = 87.7 bits (185), Expect = 3e-017
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = -2 / +2
Query: 132 ANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
A GNGEQ LSRDIYRLGHRFDFFRMLSCY+TT+GFY S+
Sbjct: 626 ACGNGEQVLSRDIYRLGHRFDFFRMLSCYFTTVGFYISS 742
Score = 45.1 bits (92), Expect = 2e-004
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1 / -2
Query: 25 VETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIA 126
++ N C + R+H EE+KAMT PVD++A+ L I+
Sbjct: 733 IKPNSCKIARKHSEEVKAMTEPVDISAEYLLPIS 632
Score = 38.2 bits (77), Expect = 0.025
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1 / +1
Query: 127 WQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFL 26
W+W + + +L ARSSL* L +A +L +N W L
Sbjct: 631 WKWGASTQQRYLQARSSL*LLPNAFVLFYNCWVL 732
>gb|CW378882.1|CW378882 fsbb001f057n17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057n17, DNA
sequence
Length = 793
Score = 87.7 bits (185), Expect = 3e-017
Identities = 33/39 (84%), Positives = 36/39 (92%)
Frame = -2 / -1
Query: 132 ANGNGEQTLSRDIYRLGHRFDFFRMLSCYYTTIGFYFST 16
A GNGEQ LSRDIYRLGHRFDFFRMLSCY+TT+GFY S+
Sbjct: 334 ACGNGEQVLSRDIYRLGHRFDFFRMLSCYFTTVGFYISS 218
Score = 45.1 bits (92), Expect = 2e-004
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1 / +2
Query: 25 VETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIA 126
++ N C + R+H EE+KAMT PVD++A+ L I+
Sbjct: 227 IKPNSCKIARKHSEEVKAMTEPVDISAEYLLPIS 328
Score = 38.2 bits (77), Expect = 0.025
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1 / -3
Query: 127 WQWRTNAEP*HLPARSSL*FLQDAVLLLHNNWFL 26
W+W + + +L ARSSL* L +A +L +N W L
Sbjct: 329 WKWGASTQQRYLQARSSL*LLPNAFVLFYNCWVL 228
>gb|CW884310.1|CW884310 Sorghum CISP Intron:I00_X00_F_PRSC1_001_SORG_IS18 IS18 Sorghum
bicolor genomic, DNA sequence
Length = 141
Score = 59.3 bits (123), Expect = 1e-008
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = -2 / +3
Query: 243 GFNSTLREGNVTHHEYMQVGKGRDVG 166
GFNSTLR+GNVTHHEY+Q+GKGR VG
Sbjct: 63 GFNSTLRQGNVTHHEYIQLGKGRVVG 140
Score = 43.7 bits (89), Expect = 6e-004
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +2 / -3
Query: 167 PTSLPLPTCMYSW*VTLPSRNVELNP 244
PT+ PLP CMYS VT P R VELNP
Sbjct: 139 PTTRPLPNCMYS*CVTFP*RRVELNP 62
Score = 30.9 bits (61), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / +2
Query: 244 RIQFHIARRQCYSP*IHASWQR 179
R+QF+ A R+CY+ *IH QR
Sbjct: 62 RVQFNPASRKCYAS*IHTIGQR 127
>gb|CW883673.1|CW883673 Sorghum CISP Intron:I00_X00_F_PRSC1_001_SORG_BTXX BTXX Sorghum
bicolor genomic, DNA sequence
Length = 142
Score = 58.8 bits (122), Expect = 2e-008
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = -2 / +2
Query: 243 GFNSTLREGNVTHHEYMQVGKGRD 172
GFNSTLR+GNVTHHEY+Q+GKGRD
Sbjct: 65 GFNSTLRQGNVTHHEYIQLGKGRD 136
Score = 39.6 bits (80), Expect = 0.010
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = +2 / -2
Query: 173 SLPLPTCMYSW*VTLPSRNVELNP 244
S PLP CMYS VT P R VELNP
Sbjct: 135 SRPLPNCMYS*CVTFP*RRVELNP 64
Score = 30.9 bits (61), Expect = 4.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / +1
Query: 244 RIQFHIARRQCYSP*IHASWQR 179
R+QF+ A R+CY+ *IH QR
Sbjct: 64 RVQFNPASRKCYAS*IHTIGQR 129
>gb|CW440700.1|CW440700 fsbb001f159h14k0 Sorghum methylation filtered library (LibID:
104) Sorghum bicolor genomic clone fsbb001f159h14, DNA
sequence
Length = 753
Score = 50.1 bits (103), Expect = 7e-006
Identities = 17/21 (80%), Positives = 20/21 (95%)
Frame = -2 / +3
Query: 78 RFDFFRMLSCYYTTIGFYFST 16
RFDFFRMLSCY+TT+GFY S+
Sbjct: 3 RFDFFRMLSCYFTTVGFYISS 65
>gb|CW884582.1|CW884582 Sorghum CISP Intron:I00_X00_F_PRSC1_001_SORG_SPQM SPQM Sorghum
propinquum genomic, DNA sequence
Length = 151
Score = 43.7 bits (89), Expect = 6e-004
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -2 / +1
Query: 243 GFNSTLREGNVTHHEYMQVG 184
GFNSTLR+G+VTHHEY+ +G
Sbjct: 91 GFNSTLRQGSVTHHEYIPLG 150
Score = 29.9 bits (59), Expect = 7.7
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2 / -3
Query: 185 PTCMYSW*VTLPSRNVELNP 244
P MYS VTLP R VELNP
Sbjct: 149 PNGMYS*CVTLP*RRVELNP 90
>gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/cell suspension Sorghum
bicolor cDNA clone CCC1_58_A07_A007 5', mRNA sequence
Length = 669
Score = 35.4 bits (71), Expect = 0.17
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -2 / +1
Query: 69 FFRMLSCYYTTIGFYF 22
+FRMLS +YTT+GFYF
Sbjct: 4 WFRMLSFFYTTVGFYF 51
>gb|CL185102.1|CL185102 104_398_10899295_116_32372_018 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899295, DNA
sequence
Length = 703
Score = 31.8 bits (63), Expect(2) = 0.49
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / -2
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 690 SSWRR*GCTARSR*SGGGRGARWSW 616
Score = 18.0 bits (33), Expect(2) = 0.49
Identities = 5/13 (38%), Positives = 8/13 (61%)
Frame = -3 / -1
Query: 80 IALISSGCCLVTT 42
I ++ CC +TT
Sbjct: 169 INTLAQSCCKITT 131
>gb|CB927932.1|CB927932 ABA1_35_F01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_35_F01_A012 3', mRNA sequence
Length = 529
Score = 33.6 bits (67), Expect = 0.60
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1 / +1
Query: 214 CYSP*IHASWQRKGCRSQSNISV*GKDSKWQW 119
C S * +SW+R GC ++S S G+ ++W W
Sbjct: 10 CSS**TCSSWRR*GCTARSR*SGGGRGARWSW 105
>gb|CW192569.1|CW192569 104_615_11179099_116_36773_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179099, DNA
sequence
Length = 706
Score = 32.7 bits (65), Expect = 1.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2 / +3
Query: 141 AKIANGNGEQTLSRDIYRLGHRFDFFRML 55
AK NG+ +Q LS I LG R DFF ++
Sbjct: 582 AKKTNGHNKQNLSTTIINLGGRNDFFALI 668
>gb|CW192570.1|CW192570 104_615_11179099_148_36774_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179099, DNA
sequence
Length = 676
Score = 32.7 bits (65), Expect = 1.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2 / -1
Query: 141 AKIANGNGEQTLSRDIYRLGHRFDFFRML 55
AK NG+ +Q LS I LG R DFF ++
Sbjct: 454 AKKTNGHNKQNLSTTIINLGGRNDFFALI 368
>gb|CW389757.1|CW389757 fsbb001f075b17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f075b17, DNA
sequence
Length = 625
Score = 25.4 bits (49), Expect(2) = 1.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2 / -1
Query: 90 RLGHRFDFFRMLSCYYTTIGFYFSTCPGGR 1
RLG R +LS + + GF+F C G+
Sbjct: 292 RLGSRIV*SDLLSAQFGSAGFWFWGCENGK 203
Score = 22.6 bits (43), Expect(2) = 1.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1 / -3
Query: 247 CRIQFHIARR 218
CR+Q HI RR
Sbjct: 590 CRLQLHIGRR 561
>gb|CW299479.1|CW299479 104_782_11463144_116_36235_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463144, DNA
sequence
Length = 750
Score = 32.2 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3 / +3
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*DLH 173
+G C GSAF HC ++S P+T * H
Sbjct: 531 SGECIGSAFGPHCSVMSKPRTSYLR*ARH 617
>gb|CW299480.1|CW299480 104_782_11463144_148_36236_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463144, DNA
sequence
Length = 741
Score = 32.2 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3 / -2
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*DLH 173
+G C GSAF HC ++S P+T * H
Sbjct: 455 SGECIGSAFGPHCSVMSKPRTSYLR*ARH 369
>gb|CX609983.1|CX609983 ANR1_16_A03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_A03_A002 3', mRNA sequence
Length = 687
Score = 24.9 bits (48), Expect(2) = 1.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 216 NVTHHEYMQVGK 181
N THH+YM +GK
Sbjct: 677 NHTHHKYMIIGK 642
Score = 23.1 bits (44), Expect(2) = 1.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1 / -1
Query: 133 SKWQWRTNAEP 101
S W+WRT++ P
Sbjct: 108 SPWRWRTSSPP 76
>gb|CX610173.1|CX610173 ANR1_17_C04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_C04_A002 3', mRNA sequence
Length = 699
Score = 24.9 bits (48), Expect(2) = 1.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / -3
Query: 216 NVTHHEYMQVGK 181
N THH+YM +GK
Sbjct: 673 NHTHHKYMIIGK 638
Score = 23.1 bits (44), Expect(2) = 1.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1 / -2
Query: 133 SKWQWRTNAEP 101
S W+WRT++ P
Sbjct: 104 SPWRWRTSSPP 72
>gb|CL185101.1|CL185101 104_398_10899295_114_32368_018 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899295, DNA
sequence
Length = 430
Score = 31.8 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / +2
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 341 SSWRR*GCTARSR*SGGGRGARWSW 415
>gb|CW267436.1|CW267436 104_737_11400737_116_35289_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400737, DNA
sequence
Length = 620
Score = 31.8 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / -2
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 541 SSWRR*GCTARSR*SGGGRGARWSW 467
>gb|CW393112.1|CW393112 fsbb001f080a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080a14, DNA
sequence
Length = 631
Score = 31.8 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / +2
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 548 SSWRR*GCTARSR*SGGGRGARWSW 622
>gb|BE362452.1|BE362452 DG1_86_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 358
Score = 31.8 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 49 SSWRR*GCTARSR*SGGGRGARWSW 123
>gb|CB924836.1|CB924836 ABA1_28_E07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_28_E07_A012 3', mRNA sequence
Length = 545
Score = 31.8 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / +2
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 5 SSWRR*GCTARSR*SGGGRGARWSW 79
>gb|CB926888.1|CB926888 ABA1_11_C01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_C01_A012 3', mRNA sequence
Length = 580
Score = 31.8 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 193 ASWQRKGCRSQSNISV*GKDSKWQW 119
+SW+R GC ++S S G+ ++W W
Sbjct: 34 SSWRR*GCTARSR*SGGGRGARWSW 108
>gb|CW448815.1|CW448815 fsbb001f182j23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182j23, DNA
sequence
Length = 552
Score = 24.9 bits (48), Expect(2) = 2.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2 / +2
Query: 173 SLPLPTCMYSW*VTLPSR 226
SLPLP C W T SR
Sbjct: 380 SLPLPVCPALWCTTCSSR 433
Score = 22.1 bits (42), Expect(2) = 2.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1 / +1
Query: 100 TAQRLFAIAICYLCL 144
T Q+L IC+LCL
Sbjct: 79 TTQKLDRSTICHLCL 123
>gb|CW212286.1|CW212286 104_643_11190943_116_37022_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190943, DNA
sequence
Length = 704
Score = 31.3 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1 / -2
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGC 170
C+IQ ++R QC+SP WQ GC
Sbjct: 499 CQIQVWMSRFQCHSPQRMQRWQYWGC 422
>gb|CW263279.1|CW263279 104_731_11230597_148_35217_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230597, DNA
sequence
Length = 714
Score = 31.3 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1 / +2
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGC 170
C+IQ ++R QC+SP WQ GC
Sbjct: 200 CQIQVWMSRFQCHSPQRMQRWQYWGC 277
>gb|CW481226.1|CW481226 fsbb001f240k24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240k24, DNA
sequence
Length = 346
Score = 31.3 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1 / +3
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGC 170
C+IQ ++R QC+SP WQ GC
Sbjct: 123 CQIQVWMSRFQCHSPQRMQRWQYWGC 200
>gb|CW453700.1|CW453700 fsbb001f197n01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f197n01, DNA
sequence
Length = 650
Score = 24.9 bits (48), Expect(2) = 5.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3 / -3
Query: 81 DLAGRCHGSAFVRHCHLLSLPQTEIFD 161
+L CH SA + CH LS E+ +
Sbjct: 171 ELPHECHTSATMSPCHQLSRVPRELLE 91
Score = 21.2 bits (40), Expect(2) = 5.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3 / -1
Query: 39 LCSNKTAS*RNQSDDLAG 92
+C+ +TAS ++S LAG
Sbjct: 572 ICNRRTASFAHKSTGLAG 519
>gb|CW315949.1|CW315949 104_807_11472633_148_35844_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472633, DNA
sequence
Length = 673
Score = 24.9 bits (48), Expect(2) = 5.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3 / -2
Query: 81 DLAGRCHGSAFVRHCHLLSLPQTEIFD 161
+L CH SA + CH LS E+ +
Sbjct: 228 ELPHECHTSATMSPCHQLSRVPRELLE 148
Score = 21.2 bits (40), Expect(2) = 5.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3 / -3
Query: 39 LCSNKTAS*RNQSDDLAG 92
+C+ +TAS ++S LAG
Sbjct: 629 ICNRRTASFAHKSTGLAG 576
>gb|CW276827.1|CW276827 104_750_11405699_148_35400_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405699, DNA
sequence
Length = 717
Score = 24.9 bits (48), Expect(2) = 5.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3 / +2
Query: 81 DLAGRCHGSAFVRHCHLLSLPQTEIFD 161
+L CH SA + CH LS E+ +
Sbjct: 554 ELPHECHTSATMSPCHQLSRVPRELLE 634
Score = 21.2 bits (40), Expect(2) = 5.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3 / +3
Query: 39 LCSNKTAS*RNQSDDLAG 92
+C+ +TAS ++S LAG
Sbjct: 153 ICNRRTASFAHKSTGLAG 206
>gb|CW174736.1|CW174736 104_587_11157566_148_36568_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157566, DNA
sequence
Length = 621
Score = 20.8 bits (39), Expect(3) = 5.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = -1 / +2
Query: 139 KDSKWQWRTNAEP 101
+ S WQW T P
Sbjct: 23 RPSSWQWLTPLSP 61
Score = 20.3 bits (38), Expect(3) = 5.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3 / +3
Query: 77 ALISSGCCLVT 45
AL S CCLVT
Sbjct: 156 ALFVSYCCLVT 188
Score = 18.5 bits (34), Expect(3) = 5.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2 / +2
Query: 90 RLGHRF 73
RLGHRF
Sbjct: 104 RLGHRF 121
>gb|BZ693526.1|BZ693526 SP__Ba0035L15.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0035L15 3', DNA sequence
Length = 953
Score = 30.4 bits (60), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1 / +3
Query: 136 LCLKQRYLIETYIPSFANLHVFMVSNIAFAQC 231
L L R L+ IP+ LHV+ ++++AF C
Sbjct: 30 LSLFMRALVSHIIPNALTLHVYHIAHVAF*SC 125
>gb|CW271589.1|CW271589 104_743_11403078_116_35339_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403078, DNA
sequence
Length = 634
Score = 30.4 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3 / +1
Query: 18 Y*SRNQLLCSNKTAS*RNQSDDLAGRCHG 104
+*S N +CS + +N + +AG+CHG
Sbjct: 286 F*SPNHCICSVRAGGNQNSTCAIAGQCHG 372
>gb|CW432896.1|CW432896 fsbb001f147n18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147n18, DNA
sequence
Length = 697
Score = 25.8 bits (50), Expect(2) = 7.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3 / +1
Query: 90 GRCHGSAFVRHCH 128
GRCHG R CH
Sbjct: 136 GRCHGGGENRRCH 174
Score = 19.9 bits (37), Expect(2) = 7.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1 / +3
Query: 115 FAIAICYLCL 144
F IC+LCL
Sbjct: 522 FRTCICFLCL 551
>gb|CW163328.1|CW163328 104_570_11151404_148_36451_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151404, DNA
sequence
Length = 696
Score = 29.9 bits (59), Expect = 7.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2 / +3
Query: 180 GRDVGLNQISLFEAKIANGNGEQ 112
GR+ GLN ISLFE ++ G+Q
Sbjct: 315 GRERGLNIISLFEMRLLTDEGKQ 383
>gb|BE358492.1|BE358492 DG1_30_E09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 29.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1 / -3
Query: 220 RQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWR 116
R C + SW+ CRS+ + S S WQWR
Sbjct: 383 RDCKTLTFSISWRGISCRSRGSTSSEFLASLWQWR 279
>gb|BE367061.1|BE367061 PI1_42_H12.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 635
Score = 29.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2 / -3
Query: 237 NSTLREGNVTHHEYMQVGKGRDVGLNQISLFE 142
NS + + T Y VG+GRD ISLFE
Sbjct: 603 NSLVLHDSYTTTFYTTVGQGRDTEFEHISLFE 508
>gb|CW162409.1|CW162409 104_569_11150927_148_36439_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150927, DNA
sequence
Length = 743
Score = 21.2 bits (40), Expect(3) = 9.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1 / -1
Query: 175 PSFANLHVFMVSNIAFAQCG 234
PSF + ++ +SN+A+ CG
Sbjct: 140 PSFLSDNLSFLSNMAWFICG 81
Score = 19.9 bits (37), Expect(3) = 9.9
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +1 / -2
Query: 142 LKQRYLIETYIPS 180
LKQR++ ++++PS
Sbjct: 229 LKQRWVQQSHLPS 191
Score = 18.0 bits (33), Expect(3) = 9.9
Identities = 5/15 (33%), Positives = 8/15 (53%)
Frame = +3 / -2
Query: 87 AGRCHGSAFVRHCHL 131
AG C+ +RH +
Sbjct: 679 AGHCNYCCMIRHSEI 635
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 323,036,756
Number of Sequences: 832831
Number of extensions: 3823487
Number of successful extensions: 384606
Number of sequences better than 10.0: 52
length of database: 163,786,556
effective HSP length: 49
effective length of database: 122,977,837
effective search space used: 3935290784
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)