TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD212848.1|CD212848 HS1_16_B05.g1_A012 Heat-shocked seed... 343 1e-093
gb|BG411201.1|BG411201 EM1_26_H05.b1_A002 Embryo 1 (EM1) So... 338 4e-092
gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassino... 264 5e-084
gb|AW671713.1|AW671713 LG1_351_F01.b1_A002 Light Grown 1 (L... 278 5e-074
gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle... 173 1e-071
gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle... 171 4e-071
gb|CW057647.1|CW057647 104_299_10518335_114_30169 Sorghum m... 144 7e-056
gb|BE596273.1|BE596273 PI1_51_F11.b1_A002 Pathogen induced ... 162 4e-055
gb|CW227901.1|CW227901 104_667_11206064_148_37245_024 Sorgh... 114 5e-047
gb|CW394820.1|CW394820 fsbb001f082j14f0 Sorghum methylation... 139 7e-043
gb|CN131044.1|CN131044 RHOH1_45_B03.g1_A002 Acid- and alkal... 133 2e-042
gb|CW237473.1|CW237473 104_693_11216188_148_37516_002 Sorgh... 142 6e-033
gb|CW065564.1|CW065564 104_312_10523221_114_30128 Sorghum m... 95 2e-030
>gb|CD212848.1|CD212848 HS1_16_B05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_16_B05_A012 5', mRNA sequence
Length = 632
Score = 343 bits (744), Expect = 1e-093
Identities = 149/171 (87%), Positives = 155/171 (90%)
Frame = -3 / -3
Query: 657 NSIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRL 478
NSIIKNPMYV RPTISG HG*TI LNQGESKWFN+CTIDKNSFCS S*TINIRNF +
Sbjct: 513 NSIIKNPMYVHRPTISGGNHG*TISSSLNQGESKWFNECTIDKNSFCSCS*TINIRNFNM 334
Query: 477 LMVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD 298
L+VLGVCHLSI*I+FIN*LE *SQNSCICA*HFINDITI HDQCKIC*ISQFTMFTKCFD
Sbjct: 333 LVVLGVCHLSI*IVFIN*LEY*SQNSCICA*HFINDITIAHDQCKIC*ISQFTMFTKCFD 154
Query: 297 *SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWIW*T*AISISFLTVEVN 145
*SSDILLR+RTSKSKNH L GV*EE HYISPNRWI *T*AI ISFLTV +N
Sbjct: 153 *SSDILLRVRTSKSKNHGLTGV*EEPHYISPNRWIR*T*AIFISFLTVLIN 1
Score = 341 bits (738), Expect = 9e-093
Identities = 142/152 (93%), Positives = 143/152 (94%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE
Sbjct: 58 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 237
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
MSSTNAAVLTS LKLIDKYDLYGQVAYPKHHK EVPDIYRLAARTKGVFINCA +EPFG
Sbjct: 238 MSSTNAAVLTSVLKLIDKYDLYGQVAYPKHHKHVEVPDIYRLAARTKGVFINCAFIEPFG 417
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
LTLIE AYGLPM TRNGGPV IHRVLDNGI
Sbjct: 418 LTLIEAAAYGLPMVATRNGGPVDIHRVLDNGI 513
Score = 307 bits (665), Expect = 1e-082
Identities = 133/168 (79%), Positives = 138/168 (82%)
Frame = +3 / +3
Query: 156 Q*GRKWRWLRFTRSTYLG*YNALLLKPPEANDXXXXXXXXXXXXXXXXXXIW*TS*TEKF 335
Q*GRK RWLRFT STYLG*YNA+LLKPP A+D IW*TS*TEKF
Sbjct: 12 Q*GRK*RWLRFTGSTYLG*YNAVLLKPP*AHDSCSCSSGPEEEYHYSSQSIW*TS*TEKF 191
Query: 336 SKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI*SS*YLSFSCE 515
SKSYTDHG+S*CH**NVKHKCSCFDFSTQVN**I SIWTSGIPQAP A *SS*YLSFSC+
Sbjct: 192 SKSYTDHGQS*CH**NVKHKCSCFDFSTQVN**IRSIWTSGIPQAPQAC*SS*YLSFSCK 371
Query: 516 NKRSFYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWACXHTSGS**WNS 659
NKRSFYQLCI *TIWTHLD*G +WSTH HPKWWAC HTSGS**WNS
Sbjct: 372 NKRSFYQLCIH*TIWTHLD*GCCLWSTHGCHPKWWACGHTSGS**WNS 515
Score = 283 bits (613), Expect = 2e-075
Identities = 126/152 (82%), Positives = 126/152 (82%)
Frame = -1 / -1
Query: 656 IPLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDC 477
IPLSRTRCM TGPPFRV MGRP A SIKVSPNGS NAQLIKTPFVLAAKR*ISGTS C
Sbjct: 512 IPLSRTRCMSTGPPFRVATMGRP*AAASIKVSPNGSMNAQLIKTPFVLAAKR*ISGTSTC 333
Query: 476 LWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALT 297
LWCLGYATCPYRSYLSINLS EVKTAAFVLDISSMTSR PMISVRFAKFLSSRCSPNALT
Sbjct: 332 LWCLGYATCPYRSYLSINLSTEVKTAAFVLDISSMTSRLPMISVRFAKFLSSRCSPNALT 153
Query: 296 RVVIFFXXXXXXXXXXXXXXXFEKKRIISAQI 201
RVVIFF FEK RIISAQI
Sbjct: 152 RVVIFFFGSGRARARIMGLRGFEKNRIISAQI 57
Score = 250 bits (541), Expect(2) = 7e-080
Identities = 108/121 (89%), Positives = 108/121 (89%)
Frame = -2 / -2
Query: 658 EFHYQEPDVCXQAHHFGXXXWVDHMXXPQSR*VQMVQPMHN**KLLLFSQLNDKYQELQI 479
EFHYQEPDVC QAHHFG WVDH PQSR*VQMVQ MHN**KLLLF QLNDKYQELQ
Sbjct: 514 EFHYQEPDVCPQAHHFGWQPWVDHKQQPQSR*VQMVQ*MHN**KLLLFLQLNDKYQELQH 335
Query: 478 AYGAWGMPLVHIDHIYQLT*VLKSKQLHLCLTFHQ*HHDSP*SV*DLLNFSVHDVHQML* 299
A GAWGMPLVHID IYQLT*VLKSKQLHLCLTFHQ*HHD P*SV*DLLNFSVHDVHQML*
Sbjct: 334 ACGAWGMPLVHIDRIYQLT*VLKSKQLHLCLTFHQ*HHDCP*SV*DLLNFSVHDVHQML* 155
Query: 298 L 296
L
Sbjct: 154 L 152
Score = 231 bits (498), Expect(2) = 4e-073
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = +2 / +2
Query: 302 KHLVNIVN*EI*QILH*SWGIVMSLMKCQAQMQLF*LQHSS*LINMIYMDKWHTPSTISN 481
KHLVNIVN*EI*QILH*SW IVMSLMKCQAQMQLF*LQ+SS*LIN IYMDKWHTPST S
Sbjct: 158 KHLVNIVN*EI*QILH*SWAIVMSLMKCQAQMQLF*LQYSS*LINTIYMDKWHTPSTTSM 337
Query: 482 LKFLIFIV*LREQKEFLSIVHWLNHLDSP*LRXXHMVYPXXXPEMVGLXTYIGFLIMEF 658
LKFLIFIV*L+EQKEFLSIVH LNHLDSP*LR MVYP PEMVGL TYIGFLIMEF
Sbjct: 338 LKFLIFIV*LQEQKEFLSIVHSLNHLDSP*LRLLLMVYPWLPPEMVGLWTYIGFLIMEF 514
Score = 68.4 bits (143), Expect(2) = 7e-080
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -2 / -2
Query: 244 ASGGLRRSALYQPK*VDLVNLSHLHFLPHCRGQ 146
A GGLRR+ALYQPK*VD VNLSHLHFLPHC Q
Sbjct: 100 AYGGLRRTALYQPK*VDPVNLSHLHFLPHCPDQ 2
Score = 65.7 bits (137), Expect(2) = 4e-073
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = +2 / +2
Query: 146 LTSTVRKEMEMAQVHQIHLFGLI*CASSQTPGSQ*F 253
L TVRKEM+MAQVH+IHLFGLI*C SSQTP S *F
Sbjct: 2 LIRTVRKEMKMAQVHRIHLFGLI*CGSSQTPVSP*F 109
>gb|BG411201.1|BG411201 EM1_26_H05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 338 bits (733), Expect = 4e-092
Identities = 146/166 (87%), Positives = 151/166 (90%)
Frame = -3 / -1
Query: 504 TINIRNFRLLMVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQ 325
TINIRNF+LL+VLGVCHLSI*I+FIN*LE *SQNSCICA*HFINDITI HDQCKIC*ISQ
Sbjct: 512 TINIRNFKLLVVLGVCHLSI*IVFIN*LEY*SQNSCICA*HFINDITIAHDQCKIC*ISQ 333
Query: 324 FTMFTKCFD*SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWIW*T*AISISFLTVEVN 145
FTMFTKCFD*SSDILLR+RTSKSKNH L GV*EE HYISPNRWI *T*AI ISFLTV +N
Sbjct: 332 FTMFTKCFD*SSDILLRVRTSKSKNHGLTGV*EEPHYISPNRWIR*T*AIFISFLTVLIN 153
Query: 144 IMWCYMTKLHARRDCNHXXXXTTKAAHTTPYSCSEFPGHS*IKTII 7
IMWCYMTKLHARR CNH TTKAAHTT YSCSEFP HS*IKTII
Sbjct: 152 IMWCYMTKLHARRYCNHTGHVTTKAAHTTFYSCSEFPSHS*IKTII 15
Score = 292 bits (633), Expect = 3e-078
Identities = 130/165 (78%), Positives = 133/165 (80%)
Frame = +3 / +2
Query: 9 *WF*SNYGPETQSKNKAWCELLWSXXXXYDCNPSWHGV*SYSTT*C*PRQ*GRKWRWLRF 188
*WF*SNYG ETQSKNK WCELLWS YDCN SWHGV*SYSTT*C* Q*GRK RWLRF
Sbjct: 17 *WF*SNYGSETQSKNKTWCELLWSLHAPYDCNTSWHGV*SYSTT*C*SGQ*GRK*RWLRF 196
Query: 189 TRSTYLG*YNALLLKPPEANDXXXXXXXXXXXXXXXXXXIW*TS*TEKFSKSYTDHGES* 368
T STYLG*YNA+LLKPP A+D IW*TS*TEKFSKSYTDHG+S*
Sbjct: 197 TGSTYLG*YNAVLLKPP*AHDSCSCSSGPEEEYHYSSQSIW*TS*TEKFSKSYTDHGQS* 376
Query: 369 CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI*SS*YLS 503
CH**NVKHKCSCFDFSTQVN**I SIWTSGIPQAP AI*SS*YLS
Sbjct: 377 CH**NVKHKCSCFDFSTQVN**IRSIWTSGIPQAPQAI*SS*YLS 511
Score = 237 bits (511), Expect(2) = 2e-086
Identities = 99/101 (98%), Positives = 99/101 (98%)
Frame = +1 / +3
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE
Sbjct: 210 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 389
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYR 504
MSSTNAAVLTS LKLIDKYDLYGQVAYPKHHKQ EVPDIYR
Sbjct: 390 MSSTNAAVLTSVLKLIDKYDLYGQVAYPKHHKQFEVPDIYR 512
Score = 183 bits (394), Expect(2) = 4e-065
Identities = 82/101 (81%), Positives = 83/101 (82%)
Frame = -1 / -2
Query: 503 R*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLS 324
R*ISGTS+CLWCLGYATCPYRSYLSINLS EVKTAAFVLDISSMTSR PMISVRFAKFLS
Sbjct: 511 R*ISGTSNCLWCLGYATCPYRSYLSINLSTEVKTAAFVLDISSMTSRLPMISVRFAKFLS 332
Query: 323 SRCSPNALTRVVIFFXXXXXXXXXXXXXXXFEKKRIISAQI 201
SRCSPNALTRVVIFF FEK RIISAQI
Sbjct: 331 SRCSPNALTRVVIFFFGSGRARARIMGLRGFEKNRIISAQI 209
Score = 155 bits (332), Expect(2) = 7e-077
Identities = 66/69 (95%), Positives = 66/69 (95%)
Frame = -2 / -3
Query: 502 DKYQELQIAYGAWGMPLVHIDHIYQLT*VLKSKQLHLCLTFHQ*HHDSP*SV*DLLNFSV 323
DKYQELQIA GAWGMPLVHID IYQLT*VLKSKQLHLCLTFHQ*HHD P*SV*DLLNFSV
Sbjct: 510 DKYQELQIACGAWGMPLVHIDRIYQLT*VLKSKQLHLCLTFHQ*HHDCP*SV*DLLNFSV 331
Query: 322 HDVHQML*L 296
HDVHQML*L
Sbjct: 330 HDVHQML*L 304
Score = 154 bits (330), Expect(2) = 7e-077
Identities = 66/79 (83%), Positives = 67/79 (84%)
Frame = -2 / -3
Query: 244 ASGGLRRSALYQPK*VDLVNLSHLHFLPHCRGQHHVVLYD*TPCQEGLQSXXXXXDQSSS 65
A GGLRR+ALYQPK*VD VNLSHLHFLPHC QHHVVLYD*TPCQE LQS DQSSS
Sbjct: 252 AYGGLRRTALYQPK*VDPVNLSHLHFLPHCPDQHHVVLYD*TPCQEVLQSYGACNDQSSS 73
Query: 64 HHALFLL*VSGP*LDQNHH 8
HH LFLL*VS P*LDQNHH
Sbjct: 72 HHVLFLL*VSEP*LDQNHH 16
Score = 143 bits (306), Expect(2) = 2e-069
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2 / +1
Query: 302 KHLVNIVN*EI*QILH*SWGIVMSLMKCQAQMQLF*LQHSS*LINMIYMDKWHTPSTISN 481
KHLVNIVN*EI*QILH*SW IVMSLMKCQAQMQLF*LQ+SS*LIN IYMDKWHTPST SN
Sbjct: 310 KHLVNIVN*EI*QILH*SWAIVMSLMKCQAQMQLF*LQYSS*LINTIYMDKWHTPSTTSN 489
Query: 482 LKFLIFI 502
LKFLIFI
Sbjct: 490 LKFLIFI 510
Score = 141 bits (302), Expect(2) = 2e-069
Identities = 68/82 (82%), Positives = 70/82 (85%)
Frame = +2 / +1
Query: 8 MMVLI*LWPGNSEQE*GVV*AALVVXXXX*LQSLLAWSLVI*HHMMLTSTVRKEMEMAQV 187
MMVLI*LW GNSEQE* VV*AALVV *LQ LLAWSLVI*HHMML TVRKEM+MAQV
Sbjct: 16 MMVLI*LWLGNSEQE*NVV*AALVVTCPV*LQYLLAWSLVI*HHMMLIRTVRKEMKMAQV 195
Query: 188 HQIHLFGLI*CASSQTPGSQ*F 253
H+IHLFGLI*C SSQTP S *F
Sbjct: 196 HRIHLFGLI*CGSSQTPVSP*F 261
Score = 103 bits (220), Expect(2) = 2e-086
Identities = 42/47 (89%), Positives = 43/47 (91%)
Frame = +1 / +3
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHIAPHDVD 150
DGFDLTMARKLRARI+RGVSCFGR MIAIPPGMEFSHIAPHDVD
Sbjct: 18 DGFDLTMARKLRARIKRGVSCFGRYMPRMIAIPPGMEFSHIAPHDVD 158
Score = 86.3 bits (182), Expect(2) = 4e-065
Identities = 39/44 (88%), Positives = 39/44 (88%)
Frame = -1 / -2
Query: 140 CGAI*LNSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
CGAI*LNSMPGGIAII RPKQLTPR ILALSFRAIVRSKPS
Sbjct: 148 CGAI*LNSMPGGIAIIRGM*RPKQLTPRFILALSFRAIVRSKPS 17
>gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_F12_A002 5', mRNA sequence
Length = 775
Score = 264 bits (570), Expect(2) = 5e-084
Identities = 110/152 (72%), Positives = 127/152 (83%)
Frame = +1 / +3
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW+ IMRFF+NPRKPMILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 258 IWSQIMRFFTNPRKPMILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 437
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
M + +AAVLTS L LID+YDLYGQVAYPKHHK SEVPDIYRLAARTKG F+N A E FG
Sbjct: 438 MHNMSAAVLTSVLTLIDEYDLYGQVAYPKHHKHSEVPDIYRLAARTKGAFVNVAYFEQFG 617
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
+TLIE GLP+ T+NG PV I++VL+NG+
Sbjct: 618 VTLIEAAMNGLPIIATKNGAPVEINQVLNNGL 713
Score = 168 bits (362), Expect(2) = 7e-049
Identities = 76/125 (60%), Positives = 91/125 (72%)
Frame = -1 / -1
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PL RT + TG PF V +G+P+ SI+V+PN S A K PFVLAAKR*+SGTS+CL
Sbjct: 709 PLFRT*LISTGAPFFVAIIGKPFIAASIRVTPNCSK*ATFTKAPFVLAAKR*MSGTSECL 530
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTR 294
CLGYAT PY+SY SIN+S +VKTAA +L I + SR P+I+VRFA LS R SPNA T
Sbjct: 529 *CLGYAT*PYKSYSSINVSTDVKTAALILCILDIASRLPIINVRFASSLSGRHSPNAFTS 350
Query: 293 VVIFF 279
VVIFF
Sbjct: 349 VVIFF 335
Score = 146 bits (313), Expect(2) = 2e-039
Identities = 73/154 (47%), Positives = 95/154 (61%)
Frame = -3 / -3
Query: 654 SIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLL 475
+II++ + R +I + TI L Q SK F I K+ CS S*TIN+RNFR+L
Sbjct: 710 TIIQDLINFNRGSILCRNYWQTIHSGLYQSNSKLFEVSYIYKSPLCSCS*TINVRNFRVL 531
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD* 295
M+LGVCHL+I +IFIN + * Q+S H T+ H QCK+C + + FTKCF
Sbjct: 530 MMLGVCHLTIQVIFINQCKH*CQDSSTHIVHLRYSFTVTHYQCKVCKLP*WPTFTKCFYK 351
Query: 294 SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWI 193
S+ILL IR S S NH LP + +EAHY+ PNRWI
Sbjct: 350 RSNILLGIRASNS*NHRLPRICKEAHYLRPNRWI 249
Score = 104 bits (222), Expect(3) = 3e-031
Identities = 51/117 (43%), Positives = 73/117 (62%)
Frame = +3 / +2
Query: 306 IW*TS*TEKFSKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI* 485
IW* S T+ K Y D+G * + *+ +++C C D S ++**I* +W+SGIPQA *A+
Sbjct: 362 IW*MSATKGACKPYIDNG*P*SYI*DAQYECCCLDISAYID**I*LVWSSGIPQAS*ALG 541
Query: 486 SS*YLSFSCENKRSFYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWACXHTSGS**WN 656
SS*+LSFSC+NK F + + TIW++ D G W + +W C + SG *W+
Sbjct: 542 SS*HLSFSCKNKGGFCKCSLLRTIWSYSDRGRYEWFANNCDKEWSPC*N*SGPE*WS 712
Score = 68.9 bits (144), Expect(2) = 5e-084
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +1 / +3
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
DGF++ +ARKLRAR++RG +C+GR M+ IPPG+EF HI
Sbjct: 72 DGFEVILARKLRARVKRGANCYGRFMPRMVIIPPGVEFGHI 194
Score = 48.7 bits (100), Expect(2) = 7e-049
Identities = 23/38 (60%), Positives = 24/38 (63%)
Frame = -1 / -1
Query: 122 NSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
NS PGGI I RP QL PRL LA SF A + SKPS
Sbjct: 184 NSTPGGIITIRGIKRP*QLAPRLTLARSFLASITSKPS 71
Score = 38.2 bits (77), Expect(3) = 3e-031
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3 / +2
Query: 9 *WF*SNYGPETQSKNKAWCELLWSXXXXYDCNPSW 113
*WF* E SK+ WC LLW Y N SW
Sbjct: 71 *WF*GYTCKEAPSKS*TWC*LLWPFYASYGYNSSW 175
Score = 37.7 bits (76), Expect(2) = 2e-039
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3 / -3
Query: 129 MTKLHARRDCNHXXXXTTKAAHTTPYSCSEFPGHS*IKTII 7
+TK ++RR+ NH T TT SCSE P +KTII
Sbjct: 191 VTKFNSRRNYNHTRHKTAITISTTFNSCSELPCKYNLKTII 69
Score = 31.3 bits (62), Expect(3) = 3e-031
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +1
Query: 191 QIHLFGLI*CASSQTPGSQ*F 253
+IHLFGL *CAS Q GS *F
Sbjct: 247 RIHLFGLR*CASLQILGSL*F 309
>gb|AW671713.1|AW671713 LG1_351_F01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 278 bits (602), Expect = 5e-074
Identities = 115/152 (75%), Positives = 132/152 (86%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IWA++MRF +NP KPMILAL+RPDPKKNITTLVKAFGE R LR LANLTLIMGNRD IDE
Sbjct: 76 IWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDE 255
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
MS+ NA+VLT+ LKLIDKYDLYG VA+PKHH Q++VP+IYRLAA+ KGVFIN ALVEPFG
Sbjct: 256 MSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINPALVEPFG 435
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
LTLIE A+GLP+ T+NGGPV I L+NG+
Sbjct: 436 LTLIEAAAHGLPIVATKNGGPVDITTALNNGL 531
Score = 177 bits (380), Expect = 2e-043
Identities = 82/125 (65%), Positives = 91/125 (72%)
Frame = -1 / -3
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PL M TGPPF V +G P A SI+V PNGST A L+KTPF+LAA+R*ISGTS L
Sbjct: 527 PLFSAVVMSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISGTSA*L 348
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTR 294
CLG AT PYRSYLSI+ V+T AF DISSM+S FPMI VRFA LS R SPNALTR
Sbjct: 347 *CLGKATLPYRSYLSISFRTVVRTLAFPADISSMSSLFPMIRVRFASSLSGRHSPNALTR 168
Query: 293 VVIFF 279
VV+FF
Sbjct: 167 VVMFF 153
>gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 606
Score = 173 bits (372), Expect(3) = 1e-071
Identities = 72/92 (78%), Positives = 81/92 (88%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW+ IMRFF+NPRKPMILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 169 IWSQIMRFFTNPRKPMILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 348
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHK 477
M + +AAVLTS L LID+YDLYGQVAYPKHHK
Sbjct: 349 MHNMSAAVLTSVLTLIDEYDLYGQVAYPKHHK 444
Score = 107 bits (229), Expect(3) = 2e-043
Identities = 49/95 (51%), Positives = 62/95 (65%)
Frame = -3 / -1
Query: 477 LMVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD 298
LM+LGVCHL+I +IFIN + * Q+S H T+ H QCK+C + + FTKCF
Sbjct: 444 LMMLGVCHLTIQVIFINQCKH*CQDSSTHIVHLRYSFTVTHYQCKVCKLP*WPTFTKCFY 265
Query: 297 *SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWI 193
S+ILL IR S S NH LP + +EAHY+ PNRWI
Sbjct: 264 KRSNILLGIRASNS*NHRLPRICKEAHYLRPNRWI 160
Score = 96.4 bits (204), Expect(2) = 9e-023
Identities = 47/86 (54%), Positives = 54/86 (62%)
Frame = -1 / -2
Query: 536 LIKTPFVLAAKR*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFP 357
L K P L L CLGYAT PY+SY SIN+S +VKTAA +L I + SR P
Sbjct: 503 LQKPPLFLQLNDKCQELPSXL*CLGYAT*PYKSYSSINVSTDVKTAALILCILDIASRLP 324
Query: 356 MISVRFAKFLSSRCSPNALTRVVIFF 279
+I+VRFA LS R SPNA T VVIFF
Sbjct: 323 IINVRFASSLSGRHSPNAFTSVVIFF 246
Score = 82.6 bits (174), Expect(3) = 1e-071
Identities = 35/58 (60%), Positives = 40/58 (68%)
Frame = +1 / +2
Query: 463 PKHHKQSEVPDIYRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIH 636
P SEVPDIYRLAARTKG F+N A E FG+TLIE GLP+ T+NG PV I+
Sbjct: 431 PSIIXHSEVPDIYRLAARTKGAFVNVAYFEQFGVTLIEAAMNGLPIIATKNGAPVEIN 604
Score = 69.3 bits (145), Expect(3) = 2e-043
Identities = 31/57 (54%), Positives = 39/57 (68%)
Frame = -1 / -1
Query: 632 MXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCLWCLG 462
+ TG PF V +G+P+ SI+V+PN S A K PFVLAAKR*+SGTS+ L LG
Sbjct: 600 ISTGAPFFVAIIGKPFIAASIRVTPNCSK*ATFTKAPFVLAAKR*MSGTSEXLMMLG 430
Score = 57.0 bits (118), Expect(4) = 3e-024
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +3 / +3
Query: 306 IW*TS*TEKFSKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQA 470
IW* S T+ K Y D+G * + *+ +++C C D S ++**I* +W+SGIPQA
Sbjct: 273 IW*MSATKGACKPYIDNG*P*SYI*DAQYECCCLDISAYID**I*LVWSSGIPQA 437
Score = 54.7 bits (113), Expect(3) = 1e-071
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1 / +1
Query: 37 KLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
KLRAR++RG +C+GR M+ IPPG+EF HI
Sbjct: 10 KLRARVKRGANCYGRFMPRMVIIPPGVEFGHI 105
Score = 46.4 bits (95), Expect(4) = 3e-024
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3 / +1
Query: 486 SS*YLSFSCENKRSFYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWAC 626
SS*+LSFSC+NK F + + TIW++ D G W + KW C
Sbjct: 454 SS*HLSFSCKNKGGFCKCSLLRTIWSYSDRGCYEWFAYNCDKKWSPC 594
Score = 38.6 bits (78), Expect(3) = 2e-043
Identities = 18/29 (62%), Positives = 18/29 (62%)
Frame = -1 / -2
Query: 122 NSMPGGIAIIXXXXRPKQLTPRLILALSF 36
NS PGGI I RP QL PRL LA SF
Sbjct: 95 NSTPGGIITIRGIKRP*QLAPRLTLARSF 9
Score = 33.1 bits (66), Expect(2) = 9e-023
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3 / -1
Query: 129 MTKLHARRDCNHXXXXTTKAAHTTPYSCSEFP 34
+TK ++RR+ NH T TT SCSE P
Sbjct: 102 VTKFNSRRNYNHTRHKTAITISTTFNSCSELP 7
Score = 33.1 bits (66), Expect(4) = 3e-024
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3 / +3
Query: 36 ETQSKNKAWCELLWSXXXXYDCNPSW 113
E SK+ WC LLW Y N SW
Sbjct: 9 EAPSKS*TWC*LLWPFYASYGYNSSW 86
Score = 31.3 bits (62), Expect(4) = 3e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 191 QIHLFGLI*CASSQTPGSQ*F 253
+IHLFGL *CAS Q GS *F
Sbjct: 158 RIHLFGLR*CASLQILGSL*F 220
>gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 608
Score = 171 bits (367), Expect(3) = 4e-071
Identities = 71/91 (78%), Positives = 80/91 (87%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW+ IMRFF+NPRKPMILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 169 IWSQIMRFFTNPRKPMILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 348
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHH 474
M + +AAVLTS L LID+YDLYGQVAYPKHH
Sbjct: 349 MHNMSAAVLTSVLTLIDEYDLYGQVAYPKHH 441
Score = 105 bits (225), Expect(3) = 3e-042
Identities = 48/94 (51%), Positives = 61/94 (64%)
Frame = -3 / -3
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD* 295
M+LGVCHL+I +IFIN + * Q+S H T+ H QCK+C + + FTKCF
Sbjct: 441 MMLGVCHLTIQVIFINQCKH*CQDSSTHIVHLRYSFTVTHYQCKVCKLP*WPTFTKCFYK 262
Query: 294 SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWI 193
S+ILL IR S S NH LP + +EAHY+ PNRWI
Sbjct: 261 RSNILLGIRASNS*NHRLPRICKEAHYLRPNRWI 160
Score = 96.4 bits (204), Expect(3) = 2e-029
Identities = 42/64 (65%), Positives = 49/64 (76%)
Frame = -1 / -1
Query: 470 CLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTRV 291
CLGYAT PY+SY SIN+S +VKTAA +L I + SR P+I+VRFA LS R SPNA T V
Sbjct: 437 CLGYAT*PYKSYSSINVSTDVKTAALILCILDIASRLPIINVRFASSLSGRHSPNAFTSV 258
Query: 290 VIFF 279
VIFF
Sbjct: 257 VIFF 246
Score = 83.1 bits (175), Expect(3) = 4e-071
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = +1 / +2
Query: 481 SEVPDIYRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIHR 639
SEVPDIYRLAARTKG F+N A E FG+TLIE GLP+ T+NG PV I++
Sbjct: 449 SEVPDIYRLAARTKGAFVNVAYFEQFGVTLIEAAMNGLPIIATKNGAPVEINQ 607
Score = 67.0 bits (140), Expect(3) = 3e-042
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = -1 / -3
Query: 632 MXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCLWCLG 462
+ TG PF V +G+P+ SI+V+PN S A K PFVLAAKR*+SGTS+ LG
Sbjct: 600 ISTGAPFFVAIIGKPFIAASIRVTPNCSK*ATFTKAPFVLAAKR*MSGTSEWAMMLG 430
Score = 57.0 bits (118), Expect(4) = 3e-024
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +3 / +3
Query: 306 IW*TS*TEKFSKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQA 470
IW* S T+ K Y D+G * + *+ +++C C D S ++**I* +W+SGIPQA
Sbjct: 273 IW*MSATKGACKPYIDNG*P*SYI*DAQYECCCLDISAYID**I*LVWSSGIPQA 437
Score = 54.7 bits (113), Expect(3) = 4e-071
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +1 / +1
Query: 37 KLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
KLRAR++RG +C+GR M+ IPPG+EF HI
Sbjct: 10 KLRARVKRGANCYGRFMPRMVIIPPGVEFGHI 105
Score = 46.4 bits (95), Expect(4) = 3e-024
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3 / +1
Query: 486 SS*YLSFSCENKRSFYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWAC 626
SS*+LSFSC+NK F + + TIW++ D G W + KW C
Sbjct: 454 SS*HLSFSCKNKGGFCKCSLLRTIWSYSDRGCYEWFAYNCDKKWSPC 594
Score = 40.9 bits (83), Expect(3) = 2e-029
Identities = 20/38 (52%), Positives = 23/38 (60%)
Frame = -3 / -2
Query: 591 TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRL 478
TI L Q SK F I K+ CS S*TIN+RNFR+
Sbjct: 559 TIHSSLYQSNSKLFEVSYIYKSPLCSCS*TINVRNFRV 446
Score = 38.6 bits (78), Expect(3) = 3e-042
Identities = 18/29 (62%), Positives = 18/29 (62%)
Frame = -1 / -1
Query: 122 NSMPGGIAIIXXXXRPKQLTPRLILALSF 36
NS PGGI I RP QL PRL LA SF
Sbjct: 95 NSTPGGIITIRGIKRP*QLAPRLTLARSF 9
Score = 33.1 bits (66), Expect(3) = 2e-029
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3 / -3
Query: 129 MTKLHARRDCNHXXXXTTKAAHTTPYSCSEFP 34
+TK ++RR+ NH T TT SCSE P
Sbjct: 102 VTKFNSRRNYNHTRHKTAITISTTFNSCSELP 7
Score = 33.1 bits (66), Expect(4) = 3e-024
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3 / +3
Query: 36 ETQSKNKAWCELLWSXXXXYDCNPSW 113
E SK+ WC LLW Y N SW
Sbjct: 9 EAPSKS*TWC*LLWPFYASYGYNSSW 86
Score = 31.3 bits (62), Expect(4) = 3e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2 / +2
Query: 191 QIHLFGLI*CASSQTPGSQ*F 253
+IHLFGL *CAS Q GS *F
Sbjct: 158 RIHLFGLR*CASLQILGSL*F 220
>gb|CW057647.1|CW057647 104_299_10518335_114_30169 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518335, DNA
sequence
Length = 652
Score = 144 bits (308), Expect(2) = 7e-056
Identities = 61/77 (79%), Positives = 68/77 (88%)
Frame = +1 / -2
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKG 525
TLI+GNRD I+EMS A VLT+ LKLID+YDLYG VAYPKHHKQ++VP IYRLAA+TKG
Sbjct: 336 TLILGNRDDIEEMSGGAATVLTAVLKLIDRYDLYGCVAYPKHHKQTDVPHIYRLAAKTKG 157
Query: 526 VFINCALVEPFGLTLIE 576
VFIN ALVEPFGLTLIE
Sbjct: 156 VFINPALVEPFGLTLIE 106
Score = 103 bits (220), Expect = 2e-021
Identities = 51/86 (59%), Positives = 61/86 (70%)
Frame = -1 / +2
Query: 575 SIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAA 396
SI+V PNGST+A L+ TP VLAA+R*+ GTS CLWCLG AT P RS S++LS V+T A
Sbjct: 107 SIRVRPNGSTSAGLMNTPLVLAARR*MCGTSVCLWCLG*ATQP*RS*RSMSLSTAVRTVA 286
Query: 395 FVLDISSMTSRFPMISVRFAKFLSSR 318
DISSM+S FP ISV +SR
Sbjct: 287 APPDISSMSSLFPSISVCSIAISASR 364
Score = 95.0 bits (201), Expect(2) = 7e-056
Identities = 35/48 (72%), Positives = 44/48 (91%)
Frame = +1 / -1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANL 345
IW++++RFF+NP KPMILAL+RPDPKKN+TTL+KA+GE R LR LANL
Sbjct: 565 IWSEVLRFFANPHKPMILALSRPDPKKNVTTLLKAYGESRHLRELANL 422
>gb|BE596273.1|BE596273 PI1_51_F11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 162 bits (349), Expect(2) = 4e-055
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IWA++MRF +NP KPMILAL+RPDPKKNITTLVKAFGE R LR LANLTLIMGNRD IDE
Sbjct: 235 IWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDE 414
Query: 382 MSSTNAAVLTSALKLIDKYDLYG 450
MS+ NA+VLT+ LKLIDKYDLYG
Sbjct: 415 MSAGNASVLTTVLKLIDKYDLYG 483
Score = 88.6 bits (187), Expect(2) = 4e-023
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = -1 / -1
Query: 449 PYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTRVVIFF 279
PYRSYLSI+ V+T AF DISSM+S FPMI VRFA LS R SPNALTRVV+FF
Sbjct: 482 PYRSYLSISFRTVVRTLAFPADISSMSSLFPMIRVRFASSLSGRHSPNALTRVVMFF 312
Score = 73.5 bits (154), Expect(2) = 4e-055
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHIAPHDVD 150
DGFD+ + + LRAR RRGVSC GR M+ IPPGM+FS++ P D+D
Sbjct: 28 DGFDVKLEKVLRARARRGVSCHGRFMPRMVVIPPGMDFSNVIPEDID 168
Score = 41.8 bits (85), Expect(2) = 4e-023
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = -1 / -1
Query: 125 LNSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
L S+PGGI I RP QLTPRL AL+ + + S PS
Sbjct: 143 LKSIPGGITTILGMKRPWQLTPRLARALNTFSSLTSNPS 27
>gb|CW227901.1|CW227901 104_667_11206064_148_37245_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206064, DNA
sequence
Length = 524
Score = 114 bits (243), Expect(2) = 5e-047
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = +1 / -2
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKG 525
TLI+GNRD I+EMS A VLT+ LKLID+YDLYG VAYPKHHKQ++VP IYRLAA+TKG
Sbjct: 187 TLILGNRDDIEEMSGGAATVLTAVLKLIDRYDLYGCVAYPKHHKQTDVPHIYRLAAKTKG 8
Query: 526 VF 531
VF
Sbjct: 7 VF 2
Score = 95.0 bits (201), Expect(2) = 5e-047
Identities = 35/48 (72%), Positives = 44/48 (91%)
Frame = +1 / -1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANL 345
IW++++RFF+NP KPMILAL+RPDPKKN+TTL+KA+GE R LR LANL
Sbjct: 416 IWSEVLRFFANPHKPMILALSRPDPKKNVTTLLKAYGESRHLRELANL 273
>gb|CW394820.1|CW394820 fsbb001f082j14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082j14, DNA
sequence
Length = 571
Score = 139 bits (299), Expect(2) = 7e-043
Identities = 60/77 (77%), Positives = 67/77 (87%)
Frame = +1 / +2
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKG 525
TLI+GNRD I+EMS A VLT+ LKLID+Y LYG VAYPKHHKQ++VP IYRLAA+TKG
Sbjct: 179 TLILGNRDDIEEMSGGAATVLTAVLKLIDRYYLYGCVAYPKHHKQTDVPHIYRLAAKTKG 358
Query: 526 VFINCALVEPFGLTLIE 576
VFIN ALVEPFGLTLIE
Sbjct: 359 VFINPALVEPFGLTLIE 409
Score = 55.6 bits (115), Expect(2) = 7e-043
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 253 LALARPDPKKNITTLVKAFGEHRELRNLANL 345
LAL+RPDPKK +TTL+KA+GE R LR LA+L
Sbjct: 1 LALSRPDPKKTVTTLLKAYGESRHLRELADL 93
>gb|CN131044.1|CN131044 RHOH1_45_B03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_B03_A002 5', mRNA sequence
Length = 860
Score = 133 bits (286), Expect(2) = 2e-042
Identities = 57/80 (71%), Positives = 66/80 (82%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW +IMRFF+NPRKPMILA+ARP +KNI TLVKAFGE LR LANLTLIMGNR+ I +
Sbjct: 619 IWFEIMRFFTNPRKPMILAIARPYAEKNIATLVKAFGECHPLRELANLTLIMGNREAISK 798
Query: 382 MSSTNAAVLTSALKLIDKYD 441
M+ +AAVLTS L LID+YD
Sbjct: 799 MNKVSAAVLTSVLTLIDEYD 858
Score = 86.3 bits (182), Expect(2) = 4e-022
Identities = 38/83 (45%), Positives = 47/83 (56%)
Frame = -3 / -3
Query: 441 IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRIRTS 262
I+FIN + QNSC HF N +T+ H QCK+ Q FTKC +IL I T
Sbjct: 858 IVFINQCKHRCQNSCTDFVHFGNSLTVAHYQCKVSKFPQRMAFTKCLHKRCNILFSIWTG 679
Query: 261 KSKNHWLPGV*EEAHYISPNRWI 193
S+NH P + EE HY+ PNRWI
Sbjct: 678 NSQNHRFPRICEEPHYLKPNRWI 610
Score = 60.2 bits (125), Expect(2) = 2e-042
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
DGF++ +ARKLRA ++RG C+GR M+ IPPG+EF +
Sbjct: 433 DGFEVMLARKLRALVKRGAHCYGRYMPRMVIIPPGVEFGQL 555
Score = 39.6 bits (80), Expect(2) = 4e-022
Identities = 21/38 (55%), Positives = 22/38 (57%)
Frame = -1 / -1
Query: 122 NSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
NS PGGI I RP Q PRL A SF A + SKPS
Sbjct: 545 NSTPGGIITIRGI*RP*Q*APRLTNARSFLASMTSKPS 432
>gb|CW237473.1|CW237473 104_693_11216188_148_37516_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216188, DNA
sequence
Length = 434
Score = 142 bits (304), Expect = 6e-033
Identities = 60/77 (77%), Positives = 67/77 (87%)
Frame = +1 / +3
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKG 525
TLI+GNRD I+EMS A VLT+ LKLID+YDLYG VAYPKHHKQ++VP IYRLAA+TKG
Sbjct: 48 TLILGNRDDIEEMSGGAATVLTAVLKLIDRYDLYGCVAYPKHHKQTDVPHIYRLAAKTKG 227
Query: 526 VFINCALVEPFGLTLIE 576
VFIN AL EPFGLTLIE
Sbjct: 228 VFINPALAEPFGLTLIE 278
>gb|CW065564.1|CW065564 104_312_10523221_114_30128 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523221, DNA
sequence
Length = 447
Score = 95.0 bits (201), Expect(3) = 2e-030
Identities = 35/48 (72%), Positives = 44/48 (91%)
Frame = +1 / -2
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANL 345
IW++++RFF+NP KPMILAL+RPDPKKN+TTL+KA+GE R LR LANL
Sbjct: 266 IWSEVLRFFANPHKPMILALSRPDPKKNVTTLLKAYGESRHLRELANL 123
Score = 52.4 bits (108), Expect(3) = 2e-030
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1 / -2
Query: 40 LRARIRRGVSCFGRXXXXMIAIPPGMEFSHIAPHDV 147
LR R RRGVSC GR M+ IPPGM+FS++ D+
Sbjct: 446 LRVRRRRGVSCLGRYMPRMVVIPPGMDFSYVDTQDL 339
Score = 24.0 bits (46), Expect(3) = 2e-030
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1 / -3
Query: 346 TLIMGNRDVIDE 381
TLI+GNRD I+E
Sbjct: 37 TLILGNRDDIEE 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 720,173,750
Number of Sequences: 832831
Number of extensions: 8805189
Number of successful extensions: 46075
Number of sequences better than 1.0e-020: 14
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20554766986
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)