TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/c... 306 2e-082
gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorgh... 248 3e-065
gb|BM325000.1|BM325000 PIC1_38_E07.b1_A002 Pathogen-infecte... 221 4e-057
gb|CW256112.1|CW256112 104_721_11226607_148_35144_032 Sorgh... 217 7e-056
gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) So... 200 9e-051
gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) So... 200 9e-051
gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation... 193 1e-048
gb|CD428230.1|CD428230 ETH1_28_F10.g1_A002 Ethylene-treated... 182 4e-045
gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sor... 171 6e-042
gb|CW173113.1|CW173113 104_584_11156668_148_36547_006 Sorgh... 155 4e-037
gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bi... 128 1e-032
gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorgh... 125 4e-028
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 123 2e-027
gb|CN147848.1|CN147848 WOUND1_52_D08.g1_A002 Wounded leaves... 113 2e-024
>gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A07_A007 5', mRNA sequence
Length = 669
Score = 306 bits (662), Expect = 2e-082
Identities = 122/156 (78%), Positives = 134/156 (85%)
Frame = -3 / +3
Query: 475 ARXGTVXNQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKS 296
A G V NQQF+IQLG FTALPMIIENSLE GFL A WDF MQ+ F+SVFYTFSMGTK+
Sbjct: 162 AALGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASVFYTFSMGTKT 341
Query: 295 HYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIA 116
HYYGRTILHGGAKYRATGRGFVV+HK FAENYRLYAR HFIKAIELG+ILT+YA++ +
Sbjct: 342 HYYGRTILHGGAKYRATGRGFVVEHKKFAENYRLYARSHFIKAIELGVILTLYASYGSAS 521
Query: 115 KNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLK 8
NTLVYI +SSWFLV SWI+APF FNPSGFDWLK
Sbjct: 522 GNTLVYILLTLSSWFLVSSWILAPFIFNPSGFDWLK 629
Score = 171 bits (367), Expect(2) = 3e-051
Identities = 79/114 (69%), Positives = 82/114 (71%)
Frame = +3 / -3
Query: 135 AYTVNIIPSSIAFMKWPLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPME 314
AY VNI PSSIA MKW A SL*FSA LC TTKP PVARYFAPP*RIV P** + VPME
Sbjct: 502 AYRVNITPSSIALMKWLRA*SL*FSANFLCSTTKPLPVARYFAPP*RIVLP**CVFVPME 323
Query: 315 NV*NTDEKFICIVKKSQIAGRKPCSREFSIIIGNAVKKPSCMMNC*LXTVPXRA 476
NV* TD CI KS A R PCS EFSII+G AV +PSCM NC*L T P A
Sbjct: 322 NV*KTDANCSCIFMKSHAAVRNPCSSEFSIIMGKAVNRPSCMTNC*LRTAPRAA 161
Score = 146 bits (314), Expect = 2e-034
Identities = 68/152 (44%), Positives = 98/152 (64%)
Frame = +2 / -2
Query: 11 QPIKTRRIKSKWSHNP*YHQKPARYXXXYVNKCILGNNTVCSIHSQYYSKLYCLYEVAPS 190
QP+KTR IK++ S NP* H+KP +++CI + I S Y++K Y E+A S
Sbjct: 626 QPVKTRGIKNEGSKNP*RHKKPT*KCQQNIHQCIPRCAAIRCIQS*YHTKFYSFDEMAAS 447
Query: 191 IQPVIFSKTLVLHNKTTASSTVFCTTMKDCPAIVMALSSHGKCVEHR*KIHLHCEEIPDS 370
I+P++FSK LVL+NK +AS + +++KD P I++ L HG+CVE+R K+ LH EIP S
Sbjct: 446 IEPIVFSKLLVLYNKASASGPILRSSVKDRPPIIVCLCPHGECVENRCKL*LHFHEIPRS 267
Query: 371 R*ETLFKRVLYNHWQCSEEAKLYDELLIXNST 466
E + K V NH E+A LYD+LLI +S+
Sbjct: 266 SEEPMLK*VFNNHG*SCEQA*LYDKLLIEDSS 171
Score = 110 bits (235), Expect(2) = 2e-026
Identities = 48/106 (45%), Positives = 63/106 (59%)
Frame = -2 / +2
Query: 461 CS*SAVHHTAWLLHCIANDYRELS*TRFPTCYLGFLHNANEFFICVLHIFHGN*EPLLWP 282
C SAV HTA +H +DY +L+* P C +GF NA IC LHI HG+ + LLW
Sbjct: 176 CPQSAVCHTARPVHSFTHDY*KLT*AWVPHCCVGFHENAATVCICFLHILHGDKDTLLWE 355
Query: 281 DNPSWWCKIPCYWPWFCCAAQEFC*KLQAVC*GPLHKGNRAWNNID 144
D+PS ++ +W CC AQE C*KL A+C P H+ R W +I+
Sbjct: 356 DDPSRRSEVSGHWQRLCCRAQEVC*KL*ALCSQPFHQSYRTWCDIN 493
Score = 51.9 bits (107), Expect(2) = 3e-051
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +3 / -3
Query: 9 FNQSKPDGLKANGAIIHDTTRNQLDIXXXM*TSVF 113
F+QSKP+GLK GA IHD TRNQL+ + TSVF
Sbjct: 628 FSQSKPEGLKMKGARIHDDTRNQLESVSRIYTSVF 524
Score = 29.0 bits (57), Expect(2) = 2e-026
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -2 / +2
Query: 77 LVSGGIMDYGSICF*SVWF*LVE 9
LVS +MD S+ F*S+WF*L E
Sbjct: 560 LVSCVVMDSCSLHF*SLWF*LAE 628
>gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 656
Score = 248 bits (537), Expect = 3e-065
Identities = 101/132 (76%), Positives = 112/132 (84%)
Frame = -3 / -2
Query: 475 ARXGTVXNQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKS 296
A G V NQQF+IQLG FTALPMIIENSLE GFL A WDF MQ+ F+SVFYTFSMGTK+
Sbjct: 397 AALGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASVFYTFSMGTKT 218
Query: 295 HYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIA 116
HYYGRTILHGGAKYRATGRGFVV+HK FAENYRLYAR HFIKAIELG+ILT+YA++ +
Sbjct: 217 HYYGRTILHGGAKYRATGRGFVVEHKKFAENYRLYARSHFIKAIELGVILTLYASYGSAS 38
Query: 115 KNTLVYIXXXIS 80
NTLVYI +S
Sbjct: 37 GNTLVYILLTLS 2
Score = 171 bits (367), Expect = 8e-042
Identities = 79/114 (69%), Positives = 82/114 (71%)
Frame = +3 / +3
Query: 135 AYTVNIIPSSIAFMKWPLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPME 314
AY VNI PSSIA MKW A SL*FSA LC TTKP PVARYFAPP*RIV P** + VPME
Sbjct: 57 AYRVNITPSSIALMKWLRA*SL*FSANFLCSTTKPLPVARYFAPP*RIVLP**CVFVPME 236
Query: 315 NV*NTDEKFICIVKKSQIAGRKPCSREFSIIIGNAVKKPSCMMNC*LXTVPXRA 476
NV* TD CI KS A R PCS EFSII+G AV +PSCM NC*L T P A
Sbjct: 237 NV*KTDANCSCIFMKSHAAVRNPCSSEFSIIMGKAVNRPSCMTNC*LRTAPRAA 398
Score = 118 bits (253), Expect = 4e-026
Identities = 54/123 (43%), Positives = 80/123 (65%)
Frame = +2 / +2
Query: 98 VNKCILGNNTVCSIHSQYYSKLYCLYEVAPSIQPVIFSKTLVLHNKTTASSTVFCTTMKD 277
+++CI + I S Y++K Y E+A SI+P++FSK LVL+NK +AS + +++KD
Sbjct: 20 IHQCIPRCAAIRCIQS*YHTKFYSFDEMAASIEPIVFSKLLVLYNKASASGPILRSSVKD 199
Query: 278 CPAIVMALSSHGKCVEHR*KIHLHCEEIPDSR*ETLFKRVLYNHWQCSEEAKLYDELLIX 457
P I++ L HG+CVE+R K+ LH EIP S E + K V NH E+A LYD+LLI
Sbjct: 200 RPPIIVCLCPHGECVENRCKL*LHFHEIPRSSEEPMLK*VFNNHG*SCEQA*LYDKLLIE 379
Query: 458 NST 466
+S+
Sbjct: 380 DSS 388
Score = 110 bits (235), Expect = 1e-023
Identities = 48/106 (45%), Positives = 63/106 (59%)
Frame = -2 / -1
Query: 461 CS*SAVHHTAWLLHCIANDYRELS*TRFPTCYLGFLHNANEFFICVLHIFHGN*EPLLWP 282
C SAV HTA +H +DY +L+* P C +GF NA IC LHI HG+ + LLW
Sbjct: 383 CPQSAVCHTARPVHSFTHDY*KLT*AWVPHCCVGFHENAATVCICFLHILHGDKDTLLWE 204
Query: 281 DNPSWWCKIPCYWPWFCCAAQEFC*KLQAVC*GPLHKGNRAWNNID 144
D+PS ++ +W CC AQE C*KL A+C P H+ R W +I+
Sbjct: 203 DDPSRRSEVSGHWQRLCCRAQEVC*KL*ALCSQPFHQSYRTWCDIN 66
>gb|BM325000.1|BM325000 PIC1_38_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 221 bits (478), Expect = 4e-057
Identities = 86/149 (57%), Positives = 110/149 (73%)
Frame = -3 / +3
Query: 448 QFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILH 269
Q ++QLGF ALPM++E LE+GF A+ D M + ++VF+TFS+GTK+HYYGR +LH
Sbjct: 75 QSLVQLGFLMALPMMMEIGLERGFGQALSDLIMMNLQLATVFFTFSLGTKTHYYGRMLLH 254
Query: 268 GGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXX 89
GGA+YR TGRGFVV H FAENYRLY+R HF+K IEL I+L VY ++T+ YI
Sbjct: 255 GGAQYRGTGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVYQLFGQSYRSTIAYIFI 434
Query: 88 XISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
IS WFLV++W+ APF FNPSGF+W K V
Sbjct: 435 TISMWFLVLTWLFAPFLFNPSGFEWAKIV 521
Score = 86.8 bits (183), Expect(2) = 4e-021
Identities = 51/104 (49%), Positives = 60/104 (57%)
Frame = +3 / -3
Query: 138 YTVNIIPSSIAFMKWPLAYSL*FSAKLLCCTTKPRPVARYFAPP*RIVRP**WLLVPMEN 317
YT++ I SSI KW SL*FSA TT P PV Y APP* + P** +LVP EN
Sbjct: 385 YTMSRIISSIPLTKWLRE*SL*FSANFA*KTTNPLPVPLY*APP*SNILP***VLVPREN 206
Query: 318 V*NTDEKFICIVKKSQIAGRKPCSREFSIIIGNAVKKPSCMMNC 449
V NT I+ +S A P SR SIIIG A++KPS +C
Sbjct: 205 VKNTVANCKFIMIRSLSA*PNPLSRPISIIIGRAIRKPS*TRDC 74
Score = 35.0 bits (70), Expect(2) = 4e-021
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3 / -3
Query: 3 TVFNQSKPDGLKANGAIIHDTTRNQLDIXXXM*TSV 110
T+F S P+GL GA H TRN ++I +* V
Sbjct: 520 TIFAHSNPEGLNRKGANSHVNTRNHIEIVIKI*AMV 413
>gb|CW256112.1|CW256112 104_721_11226607_148_35144_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226607, DNA
sequence
Length = 678
Score = 217 bits (469), Expect = 7e-056
Identities = 84/147 (57%), Positives = 110/147 (74%)
Frame = -3 / +1
Query: 442 IIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTILHGG 263
+ QLG LPM++E LE+GF A+ +F MQ+ + VF+TF +GTK+HYYGRTILHGG
Sbjct: 1 VFQLGMLLVLPMMMEVGLEKGFGRALAEFVIMQLQLAPVFFTFHLGTKTHYYGRTILHGG 180
Query: 262 AKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXI 83
AKYRATGRGFVV+H FAENYR+Y+R HF+KA+EL I+L VY A+ +++ +Y+ +
Sbjct: 181 AKYRATGRGFVVRHAKFAENYRMYSRSHFVKALELLILLVVYLAYGSSYRSSSLYLYVTV 360
Query: 82 SSWFLVVSWIMAPFAFNPSGFDWLKTV 2
S WFLV W+ APF FNPS F+W KTV
Sbjct: 361 SIWFLVFCWLFAPFIFNPSCFEWHKTV 441
>gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 502
Score = 200 bits (432), Expect = 9e-051
Identities = 74/121 (61%), Positives = 97/121 (80%)
Frame = -3 / +2
Query: 364 WDFFTMQMNFSSVFYTFSMGTKSHYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYAR 185
+ F TMQ+ F SVF+TFS+GT++HY+GRTILHGGAKY+ATGRGFVV+H FAENYRLY+R
Sbjct: 2 FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSR 181
Query: 184 GHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKT 5
HF+KA+E+ ++L VY ++ + +I ISSWFLV+SW+ AP+ FNPSGF+W KT
Sbjct: 182 SHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT 361
Query: 4 V 2
V
Sbjct: 362 V 364
>gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 200 bits (432), Expect = 9e-051
Identities = 74/121 (61%), Positives = 97/121 (80%)
Frame = -3 / +2
Query: 364 WDFFTMQMNFSSVFYTFSMGTKSHYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYAR 185
+ F TMQ+ F SVF+TFS+GT++HY+GRTILHGGAKY+ATGRGFVV+H FAENYRLY+R
Sbjct: 2 FSFITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSR 181
Query: 184 GHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKT 5
HF+KA+E+ ++L VY ++ + +I ISSWFLV+SW+ AP+ FNPSGF+W KT
Sbjct: 182 SHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKT 361
Query: 4 V 2
V
Sbjct: 362 V 364
>gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 636
Score = 193 bits (417), Expect = 1e-048
Identities = 74/120 (61%), Positives = 90/120 (75%)
Frame = -3 / +2
Query: 361 DFFTMQMNFSSVFYTFSMGTKSHYYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARG 182
DF MQ+ +SVF+TFS+GTK+HYYG T+LHGGA+YRATGRGFVV H FAENYRLY+R
Sbjct: 5 DFVLMQLQLASVFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRS 184
Query: 181 HFIKAIELGIILTVYAAHSVIAKNTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
HF+K IEL I+L VY + + YI IS WF+VV+W+ APF FNPSGF+W K V
Sbjct: 185 HFVKGIELMILLIVYEIFGQSYRGAIAYIFITISMWFMVVTWLFAPFLFNPSGFEWQKIV 364
>gb|CD428230.1|CD428230 ETH1_28_F10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 5', mRNA sequence
Length = 533
Score = 182 bits (391), Expect = 4e-045
Identities = 71/78 (91%), Positives = 72/78 (92%)
Frame = +2 / -1
Query: 2 HCFQPIKTRRIKSKWSHNP*YHQKPARYXXXYVNKCILGNNTVCSIHSQYYSKLYCLYEV 181
HCFQP KTR IKSKWSHNP*YHQKPARY YVNKCILGNNTVCSIHSQYYSK YCLYEV
Sbjct: 242 HCFQPTKTRWIKSKWSHNP*YHQKPARYIHDYVNKCILGNNTVCSIHSQYYSKFYCLYEV 63
Query: 182 APSIQPVIFSKTLVLHNK 235
APSIQPVIFSK+LVLHNK
Sbjct: 62 APSIQPVIFSKSLVLHNK 9
Score = 172 bits (371), Expect = 2e-042
Identities = 72/78 (92%), Positives = 72/78 (92%)
Frame = -3 / +3
Query: 235 FVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXISSWFLVVSW 56
FVVQHK FAENYRLYAR HFIKAIELGIILTVYAAHSVIAKNTLVYI ISSWFLVVSW
Sbjct: 9 FVVQHKRFAENYRLYARSHFIKAIELGIILTVYAAHSVIAKNTLVYIIMNISSWFLVVSW 188
Query: 55 IMAPFAFNPSGFDWLKTV 2
IMAPFAFNPSGF WLKTV
Sbjct: 189 IMAPFAFNPSGFGWLKTV 242
Score = 166 bits (357), Expect = 2e-040
Identities = 72/78 (92%), Positives = 72/78 (92%)
Frame = +1 / -3
Query: 1 TLFSTNQNQTD*KQMEP*SMIPPETS*IYXXLCKQVYSWQ*HCVQHTQSILFQALLPL*S 180
TLFSTNQNQ D*KQMEP*SMIPPETS*IY LCKQVYSWQ*HCVQHTQSILFQ LLPL*S
Sbjct: 243 TLFSTNQNQMD*KQMEP*SMIPPETS*IYS*LCKQVYSWQ*HCVQHTQSILFQVLLPL*S 64
Query: 181 GP*HTACNFQQNSCAAQQ 234
G *HTACNFQQ SCAAQQ
Sbjct: 63 GS*HTACNFQQISCAAQQ 10
Score = 163 bits (351), Expect = 1e-039
Identities = 71/77 (92%), Positives = 71/77 (92%)
Frame = +3 / -2
Query: 3 TVFNQSKPDGLKANGAIIHDTTRNQLDIXXXM*TSVFLAITLCAAYTVNIIPSSIAFMKW 182
TVFNQ KPDGLKANGAIIHDTTRNQLDI M*TSVFLAITLCAAYTVNIIPSSIAFMKW
Sbjct: 241 TVFNQPKPDGLKANGAIIHDTTRNQLDIFMIM*TSVFLAITLCAAYTVNIIPSSIAFMKW 62
Query: 183 PLAYSL*FSAKLLCCTT 233
LAYSL*FSA LLCCTT
Sbjct: 61 LLAYSL*FSANLLCCTT 11
Score = 138 bits (297), Expect = 4e-032
Identities = 62/78 (79%), Positives = 64/78 (82%)
Frame = -1 / +1
Query: 234 LLCSTRVLLKITGCMLGATS*RQ*SLE*Y*LCMLHTVLLPRIHLFT*XXIYLAGFWWYHG 55
LLCSTR LLKITGCMLGATS*RQ*+LE*Y*LCMLHTVLLPRIHLFT* IYLAGFWWYHG
Sbjct: 10 LLCSTRDLLKITGCMLGATS*RQ*NLE*Y*LCMLHTVLLPRIHLFT*S*IYLAGFWWYHG 189
Query: 54 XXXXXXXXXXXLIG*KQC 1
L+G*KQC
Sbjct: 190 LWLHLLLIHLVLVG*KQC 243
Score = 71.6 bits (150), Expect(2) = 4e-026
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -2 / +2
Query: 233 CCAAQEFC*KLQAVC*GPLHKGNRAWNNID 144
CCAAQE C*KLQAVC* PLHKGNR WNNID
Sbjct: 11 CCAAQEIC*KLQAVC*EPLHKGNRTWNNID 100
Score = 67.0 bits (140), Expect(2) = 4e-026
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -2 / +2
Query: 101 LHXXXYI*LVSGGIMDYGSICF*SVWF*LVENS 3
LH YI*LVSGGIMDYGSICF*S+WF LVENS
Sbjct: 143 LHNHEYI*LVSGGIMDYGSICF*SIWFWLVENS 241
>gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 171 bits (368), Expect = 6e-042
Identities = 65/98 (66%), Positives = 83/98 (84%)
Frame = -3 / +2
Query: 454 NQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYGRTI 275
N QF++Q+G FTA+PMI+ LE G + AI+ F TMQ+ F SVF+TFS+GT++HY+GRTI
Sbjct: 161 NAQFLVQIGIFTAVPMIMGFILELGLMKAIFSFITMQLQFCSVFFTFSLGTRTHYFGRTI 340
Query: 274 LHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIE 161
LHGGAKY+ATGRGFVV+H FAENYRLY+R HF+KA+E
Sbjct: 341 LHGGAKYKATGRGFVVRHIKFAENYRLYSRSHFVKALE 454
>gb|CW173113.1|CW173113 104_584_11156668_148_36547_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156668, DNA
sequence
Length = 628
Score = 155 bits (333), Expect = 4e-037
Identities = 59/97 (60%), Positives = 72/97 (74%)
Frame = -3 / +3
Query: 292 YYGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAK 113
YYGRTILHGGAKYR TGRGFVV H FAENYR+Y+R HF+K +EL I+L VY + +
Sbjct: 3 YYGRTILHGGAKYRPTGRGFVVYHAKFAENYRMYSRSHFVKGLELLILLVVYLVYGRSYR 182
Query: 112 NTLVYIXXXISSWFLVVSWIMAPFAFNPSGFDWLKTV 2
++ +Y+ S WFLV SW+ APF FNPS F+W KTV
Sbjct: 183 SSSLYLFVTCSMWFLVASWLFAPFIFNPSCFEWQKTV 293
>gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_F04_A002 5', mRNA sequence
Length = 773
Score = 128 bits (275), Expect(2) = 1e-032
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = -3 / +2
Query: 250 ATGRGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXISSWF 71
ATGRGFVV+H FAENYRLY+R HF+KA+E+ ++L VY ++ + +I ISSWF
Sbjct: 41 ATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWF 220
Query: 70 LVVSWIMAPFAFNPSGFDWLKTV 2
LV+SW+ AP+ FNPSGF+W KTV
Sbjct: 221 LVMSWLFAPYIFNPSGFEWQKTV 289
Score = 31.3 bits (62), Expect(2) = 1e-032
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2 / +2
Query: 281 DNPSWWCKI 255
DNPSWWCK+
Sbjct: 11 DNPSWWCKV 37
>gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220201, DNA
sequence
Length = 699
Score = 125 bits (268), Expect = 4e-028
Identities = 51/83 (61%), Positives = 61/83 (73%)
Frame = -3 / -1
Query: 463 TVXNQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKSHYYG 284
T Q +QLG T LPM++E LE+GF A+ DF MQ+ +SVF+TFS+GTK+HYYG
Sbjct: 249 TALASQSFLQLGLLTGLPMVMELGLEKGFRAALSDFILMQLQLASVFFTFSLGTKAHYYG 70
Query: 283 RTILHGGAKYRATGRGFVVQHKS 215
RTILHGGAKYR TGR FVV H S
Sbjct: 69 RTILHGGAKYRPTGRKFVVFHAS 1
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 123 bits (263), Expect = 2e-027
Identities = 49/64 (76%), Positives = 53/64 (82%)
Frame = -3 / +1
Query: 475 ARXGTVXNQQFIIQLGFFTALPMIIENSLEQGFLPAIWDFFTMQMNFSSVFYTFSMGTKS 296
A G V NQQF+IQLG FTALPMIIENSLE GFL A WDF MQ+ F+SVFYTFSMGTK+
Sbjct: 553 AALGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASVFYTFSMGTKT 732
Query: 295 HYYG 284
HYYG
Sbjct: 733 HYYG 744
>gb|CN147848.1|CN147848 WOUND1_52_D08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 5', mRNA sequence
Length = 731
Score = 113 bits (241), Expect = 2e-024
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = -3 / +2
Query: 241 RGFVVQHKSFAENYRLYARGHFIKAIELGIILTVYAAHSVIAKNTLVYIXXXISSWFLVV 62
RGFVV+H FAENYR+YAR HF+K +E+ ++L ++ + + YI ISSWF+ +
Sbjct: 2 RGFVVRHIKFAENYRIYARSHFVKGMEVALLLVIFLVYGFNNGGAVGYILLSISSWFMAL 181
Query: 61 SWIMAPFAFNPSGFDWLKTV 2
SW+ AP+ FNPSGF+W K V
Sbjct: 182 SWLFAPYLFNPSGFEWQKIV 241
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 591,605,160
Number of Sequences: 832831
Number of extensions: 8465995
Number of successful extensions: 112239
Number of sequences better than 1.0e-020: 15
length of database: 163,786,556
effective HSP length: 52
effective length of database: 120,479,344
effective search space used: 12891289808
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)