TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCL35a05.yg.2.1
         (567 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CW784439.1|CW784439  SP__Bb0020B10.f SP__Bb Sorghum propi...   131   2e-034
gb|CW116836.1|CW116836  104_492_11107335_116_34608_054 Sorgh...   124   1e-027

>gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propinquum genomic clone
           SP__Bb0020B10 5', DNA sequence
          Length = 850

 Score =  131 bits (280), Expect(2) = 2e-034
 Identities = 54/113 (47%), Positives = 72/113 (63%)
 Frame = -3 / -3

                                                                       
Query: 409 LSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDPVIVFGEDTKARMATEAVFTIAT 230
           L V K++  +H         V+L KFTTLLNTS +++PV  FG+D KAR+ATE +FTIA 
Sbjct: 848 LGVQKISAFHHLEDVLDDLVVSLCKFTTLLNTS*VEEPVTAFGDDLKARLATETLFTIAN 669

                                                                
Query: 229 AYGDHIRSGWRNIIDCILXXHKIGLLPGRLXXXXXXXXXXXXXSLPGKHTSSA 71
            YGD+IR+GWRN++DCIL  HK+GLLP R+             ++ GK   SA
Sbjct: 668 RYGDYIRTGWRNVLDCILRLHKLGLLPARVASDAADDSELSAEAVQGKAAPSA 510




 Score = 35.4 bits (71), Expect(2) = 2e-034
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3 / -3

                             
Query: 55  ISTPRKTYGLMGRFSQLL 2
           + TPRK+ GLMGRFSQLL
Sbjct: 485 MGTPRKSSGLMGRFSQLL 432



>gb|CW116836.1|CW116836 104_492_11107335_116_34608_054 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11107335, DNA
           sequence
          Length = 573

 Score =  124 bits (265), Expect = 1e-027
 Identities = 52/68 (76%), Positives = 56/68 (82%)
 Frame = -2 / -3

                                                                       
Query: 476 CRVCGXXXC*AXXGXYRMH*WXXIGGETGXXLSS**CSE*SCCGTI*IHYFVEHFLH**S 297
           C  CG   C*A  G YRMH*W  +GG+TG  LSS**CS+*SCCGTI*IH+FVEHFLH**S
Sbjct: 205 CCFCGF*QC*A*RGSYRMH*WLPVGGKTGCILSS**CSQ*SCCGTI*IHHFVEHFLH**S 26

                   
Query: 296 CNSFRGGY 273
           CNSFRGGY
Sbjct: 25  CNSFRGGY 2




 Score =  101 bits (216), Expect = 7e-021
 Identities = 48/68 (70%), Positives = 48/68 (70%)
 Frame = -3 / -1

                                                                       
Query: 475 AVSVVXXXVEXXXVLTGCIDGXLSVAKLAXXYHXXXXXXXXXVALSKFTTLLNTSYIDDP 296
           AVSVV   VE   VLTGCIDG LSVAKLA  YH         VALSKFTTLLNTSYIDDP
Sbjct: 204 AVSVVFDNVEHEEVLTGCIDGFLSVAKLAAFYHLDDVLNDLVVALSKFTTLLNTSYIDDP 25

                   
Query: 295 VIVFGEDT 272
           V  FGEDT
Sbjct: 24  VTAFGEDT 1



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 491,572,148
Number of Sequences: 832831
Number of extensions: 5431041
Number of successful extensions: 38804
Number of sequences better than 1.0e-020: 2
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16152279255
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)