TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) So... 119 4e-027
gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum b... 109 4e-024
gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated... 100 2e-021
gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2... 100 3e-021
gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2... 100 3e-021
gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infecte... 100 3e-021
>gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 119 bits (255), Expect = 4e-027
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSP+NSPCTE+FPLTPNNPYGKTKLVVEDICRDIYRSDPEWK ILLRY
Sbjct: 239 GSPRNSPCTEEFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKSILLRY 382
>gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 5', mRNA sequence
Length = 639
Score = 109 bits (233), Expect = 4e-024
Identities = 40/48 (83%), Positives = 44/48 (91%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE FPLTP+NPYG+TKL+ E+ICRDIY SDPEW IILLRY
Sbjct: 455 GSPKNSPCTEDFPLTPHNPYGRTKLMAEEICRDIYHSDPEWNIILLRY 598
>gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_G11_A002 5', mRNA sequence
Length = 788
Score = 100 bits (214), Expect = 2e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL NPYG+TKLV+EDICRD++RSDP+WKIILLRY
Sbjct: 604 GCPKEVPCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRY 747
>gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 99.7 bits (212), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL NPYG+TKLV+EDICRD++RSDP+WKIILLRY
Sbjct: 396 GWPKEVPCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRY 539
>gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 566
Score = 99.7 bits (212), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL NPYG+TKLV+EDICRD++RSDP+WKIILLRY
Sbjct: 396 GWPKEVPCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRY 539
>gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 560
Score = 99.7 bits (212), Expect = 3e-021
Identities = 36/48 (75%), Positives = 42/48 (87%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
G PK PCTE+FPL NPYG+TKLV+EDICRD++RSDP+WKIILLRY
Sbjct: 405 GWPKEVPCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRY 548
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.317 0.142 0.459
Matrix: BLOSUM62
Number of Hits to DB: 205,595,631
Number of Sequences: 832831
Number of extensions: 1921273
Number of successful extensions: 260646
Number of sequences better than 1.0e-020: 6
length of database: 163,786,556
effective HSP length: 41
effective length of database: 129,640,485
effective search space used: 1685326305
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)