TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Me... 178 2e-044
gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Me... 178 2e-044
gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassino... 177 6e-044
gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2... 171 2e-042
gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stress... 170 6e-042
gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorgh... 147 5e-035
gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorgh... 147 5e-035
gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation... 139 1e-032
gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sor... 79 1e-032
gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots ... 79 2e-032
gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2... 79 3e-032
gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkal... 79 4e-032
gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkal... 79 4e-032
gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorgh... 81 1e-031
gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient se... 81 1e-031
gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-tre... 81 1e-031
gb|AW744882.1|AW744882 LG1_384_E04.b1_A002 Light Grown 1 (L... 78 1e-031
gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorgh... 78 1e-031
gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorgh... 78 2e-031
gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation... 78 2e-031
gb|CN129247.1|CN129247 RHOH1_34_G09.b3_A002 Acid- and alkal... 76 5e-028
gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Me... 122 1e-027
gb|CN128754.1|CN128754 RHOH1_31_H09.b1_A002 Acid- and alkal... 78 3e-026
gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorg... 77 6e-025
gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorg... 77 7e-025
gb|CW430835.1|CW430835 fsbb001f144l18k0 Sorghum methylation... 111 4e-024
gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle... 110 6e-024
gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorgh... 109 1e-023
>gb|BF480979.1|BF480979 FM1_15_G12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 721
Score = 178 bits (384), Expect = 2e-044
Identities = 71/93 (76%), Positives = 75/93 (80%)
Frame = +2 / +2
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR VFTSLCCVP T Q SWCRHELHCDIQG RRRGVLRA+HIQMD+PSDTSD+P
Sbjct: 125 AVLGHWRCVFTSLCCVPRTPQGHSWCRHELHCDIQGWRRRGVLRAVHIQMDNPSDTSDHP 304
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALLC 286
A TE HWS SW C+ I*IMG PVREALLC
Sbjct: 305 ASTEFHWSSSWRFQCNQQWI*IMGAPVREALLC 403
Score = 177 bits (380), Expect = 6e-044
Identities = 73/92 (79%), Positives = 74/92 (80%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVSSHLFAVFQGLLK IAGVDTSFTVTSKGGDDEEFSELYTFKW
Sbjct: 126 QFWVIGGVSSHLFAVFQGLLKVIAGVDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTL 305
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 306 LLLNFIGVVAGVSNAINNGYESWGPLFGKLFF 401
Score = 163 bits (350), Expect = 8e-040
Identities = 73/92 (79%), Positives = 76/92 (82%)
Frame = +1 / +1
Query: 10 SFGXLEACLHISLLCSRDYSXX*LV*TRASL*HPRAETTRSSQSSTHSNGRPF*YLRQPC 189
SFG LE CLHISLLCS+D S *LV*TRASL*HPR ETTRSSQS THSNG+PF*YLR PC
Sbjct: 127 SFGSLEVCLHISLLCSKDSSRS*LV*TRASL*HPRVETTRSSQSCTHSNGQPF*YLRPPC 306
Query: 190 SY*TSLEW*LAXXMRSXTDMNHGAPCSGSSSL 285
Y* SLE *LA M+S DMNHG PCSGSSSL
Sbjct: 307 FY*ISLE**LAFPMQSTMDMNHGGPCSGSSSL 402
Score = 149 bits (319), Expect = 4e-035
Identities = 63/93 (67%), Positives = 63/93 (67%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP IA PATTPMKF VHLNV SPPLD
Sbjct: 403 AKKSFPNRGPHDSYPLLIALETPATTPMKFSRSRVVGGIRRVVHLNVYSSENSSSSPPLD 224
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTAKRCEDTPP QNC
Sbjct: 223 VTVKLVSTPAMTLRSPWNTAKRCEDTPPMTQNC 125
Score = 146 bits (314), Expect = 7e-035
Identities = 67/92 (72%), Positives = 71/92 (77%)
Frame = -3 / -3
Query: 284 KEELPEQGAP*FISVXDRIXNASYHSNEVQ*EQGCRRYQKGRPFXXXXXXXXXXVSALGC 105
KEELPEQG P*FIS+ D I NASY+SNE+Q*+QG RRYQKG PF VS LGC
Sbjct: 401 KEELPEQGPP*FISIVDCIGNASYYSNEIQ*KQGGRRYQKGCPFECVQL*ELLVVSTLGC 222
Query: 104 HSEARVYTSYXLE*SLEHSKEM*RHASNXPKL 9
HSEARVYTSY LE SLEHSKEM*RH SN PKL
Sbjct: 221 HSEARVYTSYDLEESLEHSKEM*RHTSNDPKL 126
Score = 145 bits (311), Expect = 2e-034
Identities = 72/93 (77%), Positives = 73/93 (78%)
Frame = -2 / -2
Query: 285 QRRASRTGGPMIHIRX*SHXXCQLPLQ*SSVGAGLSEVSEGSSI*MCRALRTPRRLRPWM 106
QRRASRTG PMIHI * H QL LQ*+SV AG SEVSEG SI*MC ALRTPRRL PWM
Sbjct: 402 QRRASRTGAPMIHIHC*LHWKRQLLLQ*NSVEAGWSEVSEGLSI*MCTALRTPRRLHPWM 223
Query: 105 SQ*SSCLHQLXX*VVPGTQQRDVKTRLQXXKTA 7
SQ*SSCLHQL * V GTQQRDVKT LQ KTA
Sbjct: 222 SQ*SSCLHQL*P*GVLGTQQRDVKTHLQ*PKTA 124
>gb|BG050984.1|BG050984 FM1_55_A02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 362
Score = 178 bits (384), Expect = 2e-044
Identities = 71/93 (76%), Positives = 75/93 (80%)
Frame = +2 / +1
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR VFTSLCCVP T Q SWCRHELHCDIQG RRRGVLRA+HIQMD+PSDTSD+P
Sbjct: 43 AVLGHWRCVFTSLCCVPRTPQGHSWCRHELHCDIQGWRRRGVLRAVHIQMDNPSDTSDHP 222
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALLC 286
A TE HWS SW C+ I*IMG PVREALLC
Sbjct: 223 ASTEFHWSSSWRFQCNQQWI*IMGAPVREALLC 321
Score = 177 bits (380), Expect = 6e-044
Identities = 73/92 (79%), Positives = 74/92 (80%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVSSHLFAVFQGLLK IAGVDTSFTVTSKGGDDEEFSELYTFKW
Sbjct: 44 QFWVIGGVSSHLFAVFQGLLKVIAGVDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTL 223
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 224 LLLNFIGVVAGVSNAINNGYESWGPLFGKLFF 319
Score = 163 bits (350), Expect = 8e-040
Identities = 73/92 (79%), Positives = 76/92 (82%)
Frame = +1 / +3
Query: 10 SFGXLEACLHISLLCSRDYSXX*LV*TRASL*HPRAETTRSSQSSTHSNGRPF*YLRQPC 189
SFG LE CLHISLLCS+D S *LV*TRASL*HPR ETTRSSQS THSNG+PF*YLR PC
Sbjct: 45 SFGSLEVCLHISLLCSKDSSRS*LV*TRASL*HPRVETTRSSQSCTHSNGQPF*YLRPPC 224
Query: 190 SY*TSLEW*LAXXMRSXTDMNHGAPCSGSSSL 285
Y* SLE *LA M+S DMNHG PCSGSSSL
Sbjct: 225 FY*ISLE**LAFPMQSTMDMNHGGPCSGSSSL 320
Score = 149 bits (319), Expect = 4e-035
Identities = 63/93 (67%), Positives = 63/93 (67%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFPNRGPHDSYP IA PATTPMKF VHLNV SPPLD
Sbjct: 321 AKKSFPNRGPHDSYPLLIALETPATTPMKFSRSRVVGGIRRVVHLNVYSSENSSSSPPLD 142
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTAKRCEDTPP QNC
Sbjct: 141 VTVKLVSTPAMTLRSPWNTAKRCEDTPPMTQNC 43
Score = 146 bits (314), Expect = 7e-035
Identities = 67/92 (72%), Positives = 71/92 (77%)
Frame = -3 / -2
Query: 284 KEELPEQGAP*FISVXDRIXNASYHSNEVQ*EQGCRRYQKGRPFXXXXXXXXXXVSALGC 105
KEELPEQG P*FIS+ D I NASY+SNE+Q*+QG RRYQKG PF VS LGC
Sbjct: 319 KEELPEQGPP*FISIVDCIGNASYYSNEIQ*KQGGRRYQKGCPFECVQL*ELLVVSTLGC 140
Query: 104 HSEARVYTSYXLE*SLEHSKEM*RHASNXPKL 9
HSEARVYTSY LE SLEHSKEM*RH SN PKL
Sbjct: 139 HSEARVYTSYDLEESLEHSKEM*RHTSNDPKL 44
Score = 145 bits (311), Expect = 2e-034
Identities = 72/93 (77%), Positives = 73/93 (78%)
Frame = -2 / -1
Query: 285 QRRASRTGGPMIHIRX*SHXXCQLPLQ*SSVGAGLSEVSEGSSI*MCRALRTPRRLRPWM 106
QRRASRTG PMIHI * H QL LQ*+SV AG SEVSEG SI*MC ALRTPRRL PWM
Sbjct: 320 QRRASRTGAPMIHIHC*LHWKRQLLLQ*NSVEAGWSEVSEGLSI*MCTALRTPRRLHPWM 141
Query: 105 SQ*SSCLHQLXX*VVPGTQQRDVKTRLQXXKTA 7
SQ*SSCLHQL * V GTQQRDVKT LQ KTA
Sbjct: 140 SQ*SSCLHQL*P*GVLGTQQRDVKTHLQ*PKTA 42
>gb|CX618063.1|CX618063 GABR1_37_B05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_B05_A002 5', mRNA sequence
Length = 728
Score = 177 bits (380), Expect = 6e-044
Identities = 73/92 (79%), Positives = 74/92 (80%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVSSHLFAVFQGLLK IAGVDTSFTVTSKGGDDEEFSELYTFKW
Sbjct: 373 QFWVIGGVSSHLFAVFQGLLKVIAGVDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTL 552
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 553 LLLNFIGVVAGVSNAINNGYESWGPLFGKLFF 648
Score = 144 bits (308), Expect = 1e-033
Identities = 61/93 (65%), Positives = 61/93 (65%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA PATTPMKF VHLNV SPP D
Sbjct: 650 AKKSFPKRGPHDSYPLLIALETPATTPMKFNRSKVVGGINKVVHLNVYSSENSSSSPPFD 471
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVSTPA L SPWNTAKRCEDTPP QNC
Sbjct: 470 VTVKLVSTPAMTLRSPWNTAKRCEDTPPMTQNC 372
Score = 127 bits (271), Expect = 6e-029
Identities = 55/93 (59%), Positives = 65/93 (69%)
Frame = +2 / +3
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR V LCCVPGT+Q SWC ++LHCDI+G R GVLRA++IQMD DTS +
Sbjct: 372 AVLGHWRCVLAPLCCVPGTSQGHSWC*YKLHCDIKGWR**GVLRAVYIQMDYLIDTSYHF 551
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALLC 286
AP ELHW G W + RI*+MG P+ EALLC
Sbjct: 552 APIELHWCGCWCFQRNQ*RI*VMGSPLWEALLC 650
Score = 119 bits (255), Expect = 1e-026
Identities = 57/92 (61%), Positives = 62/92 (67%)
Frame = +1 / +2
Query: 10 SFGXLEACLHISLLCSRDYSXX*LV*TRASL*HPRAETTRSSQSSTHSNGRPF*YLRQPC 189
S G LE C SLLCSRD+S *LV +ASL*H R E RSSQS HSNG P+*YL C
Sbjct: 374 SSGSLEVCPRTSLLCSRDFSRS*LVLIQASL*HQRVEMMRSSQSCIHSNGLPY*YLLPLC 553
Query: 190 SY*TSLEW*LAXXMRSXTDMNHGAPCSGSSSL 285
SY*TSL W L +S TDM+HG P GSSSL
Sbjct: 554 SY*TSLVWLLVFPTQSITDMSHGVPSLGSSSL 649
Score = 111 bits (236), Expect = 4e-024
Identities = 53/92 (57%), Positives = 61/92 (66%)
Frame = -3 / -3
Query: 284 KEELPEQGAP*FISVXDRIXNASYHSNEVQ*EQGCRRYQKGRPFXXXXXXXXXXVSALGC 105
KEELP++G P* ISV D + N S H+NEVQ*EQ RRYQ G PF +S L C
Sbjct: 648 KEELPKEGTP*LISVIDCVGNTSNHTNEVQ*EQSGRRYQ*GSPFECIQL*ELLIISTL*C 469
Query: 104 HSEARVYTSYXLE*SLEHSKEM*RHASNXPKL 9
HSEA + TSY LE SLEHSKE+ H SN P+L
Sbjct: 468 HSEACINTSYDLEKSLEHSKEVRGHTSNDPEL 373
>gb|BG101839.1|BG101839 RHIZ2_23_A10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 171 bits (369), Expect = 2e-042
Identities = 70/92 (76%), Positives = 73/92 (79%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQGLLK +AG+DTSFTVTSK GDDEEFSELYTFKW
Sbjct: 82 QFWVIGGVSAHLFAVFQGLLKVLAGIDTSFTVTSKAGDDEEFSELYTFKWTTLLIPPTTL 261
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 262 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 357
Score = 129 bits (276), Expect = 3e-029
Identities = 55/93 (59%), Positives = 57/93 (61%)
Frame = -1 / -1
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA +PATTPMK VHLNV SP D
Sbjct: 359 AKKSFPKRGPHDSYPLLIAFEIPATTPMKLSRRSVVGGINRVVHLNVYSSENSSSSPAFD 180
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVS PA L PWNTAKRC +TPP QNC
Sbjct: 179 VTVKLVSIPARTLRRPWNTAKRCAETPPMTQNC 81
Score = 102 bits (217), Expect = 2e-021
Identities = 47/92 (51%), Positives = 58/92 (63%)
Frame = +2 / +3
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR TSL VP +Q RHELH I+GR RRGVLRA+H+QMD P DTS +
Sbjct: 81 AVLGHWRCFRTSLRGVPRPSQGPRRYRHELHRHIKGRGRRGVLRAVHVQMDHPVDTSHHA 260
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
+P +LH W+ D R+ +MG +REALL
Sbjct: 261 SPAQLHRGRGWNLERDQQRVRVMGSSLREALL 356
>gb|CN132882.1|CN132882 OX1_8_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_F12_A002 5', mRNA sequence
Length = 704
Score = 170 bits (365), Expect = 6e-042
Identities = 69/92 (75%), Positives = 72/92 (78%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLF VFQGLLK +AG+DTSFTVTSK GDDEEFSELYTFKW
Sbjct: 365 QFWVIGGVSAHLFTVFQGLLKVLAGIDTSFTVTSKAGDDEEFSELYTFKWTTLLIPPTTL 544
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
NFIGVVAGI NAI GYESWGPLFGKLFF
Sbjct: 545 LLLNFIGVVAGISNAINNGYESWGPLFGKLFF 640
Score = 130 bits (278), Expect = 2e-029
Identities = 55/93 (59%), Positives = 57/93 (61%)
Frame = -1 / -3
Query: 286 AKKSFPNRGPHDSYPXXIAXXMPATTPMKFXXXXXXXXXXXXVHLNVXXXXXXXXSPPLD 107
AKKSFP RGPHDSYP IA +PATTPMKF VHLNV SP D
Sbjct: 642 AKKSFPKRGPHDSYPLLIAFEIPATTPMKFSRRSVVGGINRVVHLNVYSSENSSSSPAFD 463
Query: 106 VTVKLVSTPAXXLSSPWNTAKRCEDTPPXXQNC 8
VTVKLVS PA L PWNT KRC +TPP QNC
Sbjct: 462 VTVKLVSIPARTLRRPWNTVKRCAETPPMTQNC 364
Score = 101 bits (216), Expect = 2e-021
Identities = 47/92 (51%), Positives = 58/92 (63%)
Frame = +2 / +1
Query: 8 AVLXXWRRVFTSLCCVPGTTQXXSWCRHELHCDIQGRRRRGVLRALHIQMDDPSDTSDNP 187
AVL WR TSL VP +Q RHELH I+GR RRGVLRA+H+QMD P D S++
Sbjct: 364 AVLGHWRCFRTSLHGVPRPSQGPRRYRHELHRHIKGRGRRGVLRAVHVQMDHPVDPSNHA 543
Query: 188 APTELHWSGSWHXXCDXXRI*IMGPPVREALL 283
+P ELH W+ D R+ +MG +REALL
Sbjct: 544 SPAELHRGRGWNLERDQQRVRVMGSSLREALL 639
>gb|CW164547.1|CW164547 104_572_11152044_148_36463_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152044, DNA
sequence
Length = 606
Score = 147 bits (315), Expect = 5e-035
Identities = 58/92 (63%), Positives = 66/92 (71%)
Frame = +3 / -3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQG+LK IAG+DT+FTVT+K DD EF ELY FKW
Sbjct: 409 QFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDAEFGELYVFKWTTVLIPPTSI 230
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVVAG A+ GYESWGPLFGK+FF
Sbjct: 229 LVLNMVGVVAGFSAALNSGYESWGPLFGKVFF 134
>gb|CW224629.1|CW224629 104_662_11203928_148_37201_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203928, DNA
sequence
Length = 714
Score = 147 bits (315), Expect = 5e-035
Identities = 58/92 (63%), Positives = 66/92 (71%)
Frame = +3 / -3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQG+LK IAG+DT+FTVT+K DD EF ELY FKW
Sbjct: 406 QFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDAEFGELYVFKWTTVLIPPTSI 227
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GVVAG A+ GYESWGPLFGK+FF
Sbjct: 226 LVLNMVGVVAGFSAALNSGYESWGPLFGKVFF 131
>gb|CW481819.1|CW481819 fsbb001f241j14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241j14, DNA
sequence
Length = 573
Score = 139 bits (298), Expect = 1e-032
Identities = 56/92 (60%), Positives = 64/92 (69%)
Frame = +3 / -2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVSSHLFA+ QGLLK + GV+T F VT KGGD +EFSELY FKW
Sbjct: 392 QFWVIGGVSSHLFALCQGLLKVLGGVNTKFRVTLKGGDTDEFSELYEFKWTWLLVPPMTL 213
Query: 189 XXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
N +GV+AG+ AI GYE+WGPL GKLFF
Sbjct: 212 LLLNVVGVLAGVSKAITDGYEAWGPLIGKLFF 117
>gb|BG240580.1|BG240580 OV1_31_F08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 79.0 bits (166), Expect(2) = 1e-032
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
DD +F+ELY FKW N +G+VAG+ AI GY+SWGPLFGKLFF
Sbjct: 254 DDGDFAELYVFKWTSLLIPPTTVLVINLVGIVAGVSYAINSGYQSWGPLFGKLFF 418
Score = 78.5 bits (165), Expect(2) = 1e-032
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK DD+
Sbjct: 140 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDDD 259
>gb|CX607839.1|CX607839 ANR1_31_C06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_C06_A002 3', mRNA sequence
Length = 841
Score = 79.0 bits (166), Expect(2) = 2e-032
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
DD +F+ELY FKW N +G+VAG+ AI GY+SWGPLFGKLFF
Sbjct: 118 DDGDFAELYVFKWTSLLIPPTTVLVINLVGIVAGVSYAINSGYQSWGPLFGKLFF 282
Score = 78.5 bits (165), Expect(2) = 2e-032
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK DD+
Sbjct: 4 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDDD 123
>gb|BG103131.1|BG103131 RHIZ2_18_E07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 669
Score = 79.0 bits (166), Expect(2) = 3e-032
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 100 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 219
Score = 77.6 bits (163), Expect(2) = 3e-032
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAGI AI GY+SWGPLFGKLFF
Sbjct: 214 EDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFF 378
>gb|CN128917.1|CN128917 RHOH1_32_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_H10_A002 3', mRNA sequence
Length = 785
Score = 79.0 bits (166), Expect(2) = 4e-032
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 47 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 166
Score = 77.6 bits (163), Expect(2) = 4e-032
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAGI AI GY+SWGPLFGKLFF
Sbjct: 161 EDGDFAELYMFKWTTFLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFF 325
>gb|CN127278.1|CN127278 RHOH1_22_C03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_C03_A002 3', mRNA sequence
Length = 857
Score = 79.0 bits (166), Expect(2) = 4e-032
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 51 QFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 170
Score = 77.6 bits (163), Expect(2) = 4e-032
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAGI AI GY+SWGPLFGKLFF
Sbjct: 165 EDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFF 329
>gb|CW148395.1|CW148395 104_547_11141932_148_35011_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11141932, DNA
sequence
Length = 621
Score = 80.8 bits (170), Expect(2) = 1e-031
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +3 / -3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D+E
Sbjct: 502 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKATDEE 383
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / -3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N IGVVAG AI GY+SWGPLFGKLFF
Sbjct: 388 EEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFF 224
>gb|CF072057.1|CF072057 FE1_20_C10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_C10_A002 3', mRNA sequence
Length = 666
Score = 80.8 bits (170), Expect(2) = 1e-031
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D+E
Sbjct: 22 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKATDEE 141
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N IGVVAG AI GY+SWGPLFGKLFF
Sbjct: 136 EEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFF 300
>gb|CD423905.1|CD423905 SA1_2_G12.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_2_G12_A002 3', mRNA sequence
Length = 743
Score = 80.8 bits (170), Expect(2) = 1e-031
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG+S+HLFAVFQGLLK +AG+DTSFTVTSK D+E
Sbjct: 96 QFWVIGGISAHLFAVFQGLLKVLAGIDTSFTVTSKATDEE 215
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
++ +F+ELY FKW N IGVVAG AI GY+SWGPLFGKLFF
Sbjct: 210 EEGDFAELYMFKWTTLLIPPTTILIINLIGVVAGTSYAINSGYQSWGPLFGKLFF 374
>gb|AW744882.1|AW744882 LG1_384_E04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 77.6 bits (163), Expect(2) = 1e-031
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 305 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 424
Score = 76.7 bits (161), Expect(2) = 1e-031
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 419 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 583
>gb|CL148485.1|CL148485 104_328_10593130_116_31783_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 591
Score = 77.6 bits (163), Expect(2) = 1e-031
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +3
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 165 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 284
Score = 76.7 bits (161), Expect(2) = 1e-031
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 279 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 443
>gb|CL148486.1|CL148486 104_328_10593130_148_31782_254 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593130, DNA
sequence
Length = 638
Score = 77.6 bits (163), Expect(2) = 2e-031
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / -2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 580 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 461
Score = 76.7 bits (161), Expect(2) = 2e-031
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / -2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 466 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 302
>gb|CW385345.1|CW385345 fsbb001f068m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068m13, DNA
sequence
Length = 659
Score = 77.6 bits (163), Expect(2) = 2e-031
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 131 QFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDED 250
Score = 76.7 bits (161), Expect(2) = 2e-031
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +2
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 245 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 409
>gb|CN129247.1|CN129247 RHOH1_34_G09.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G09_A002 3', mRNA sequence
Length = 774
Score = 75.8 bits (159), Expect(2) = 5e-028
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = +3 / +1
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
QFW IGG S+HLF VFQGLLK +AG+DT+FTVTSK D++
Sbjct: 70 QFWVIGGTSAHLFTVFQGLLKVLAGIDTNFTVTSKASDED 189
Score = 67.0 bits (140), Expect(2) = 5e-028
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFG 272
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFG
Sbjct: 184 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFG 336
>gb|BF481250.1|BF481250 FM1_17_E01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 412
Score = 122 bits (262), Expect = 1e-027
Identities = 49/64 (76%), Positives = 53/64 (82%)
Frame = +2 / +3
Query: 95 LHCDIQGRRRRGVLRALHIQMDDPSDTSDNPAPTELHWSGSWHXXCDXXRI*IMGPPVRE 274
LHCDIQG RRRGVLRA+HIQMD+PSDTSD+PA TE HWS SW C+ I*IMG PVRE
Sbjct: 9 LHCDIQGWRRRGVLRAVHIQMDNPSDTSDHPASTEFHWSSSWRFQCNQQWI*IMGAPVRE 188
Query: 275 ALLC 286
ALLC
Sbjct: 189 ALLC 200
Score = 115 bits (246), Expect = 2e-025
Identities = 51/64 (79%), Positives = 53/64 (82%)
Frame = +1 / +2
Query: 94 ASL*HPRAETTRSSQSSTHSNGRPF*YLRQPCSY*TSLEW*LAXXMRSXTDMNHGAPCSG 273
ASL*HPR ETTRSSQS THSNG+PF*YLR PC Y* SLE *LA M+S DMNHG PCSG
Sbjct: 8 ASL*HPRVETTRSSQSCTHSNGQPF*YLRPPCFY*ISLE**LAFPMQSTMDMNHGGPCSG 187
Query: 274 SSSL 285
SSSL
Sbjct: 188 SSSL 199
Score = 114 bits (243), Expect = 4e-025
Identities = 46/63 (73%), Positives = 47/63 (74%)
Frame = +3 / +1
Query: 96 FTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGK 275
FTVTSKGGDDEEFSELYTFKW NFIGVVAG+ NAI GYESWGPLFGK
Sbjct: 10 FTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGK 189
Query: 276 LFF 284
LFF
Sbjct: 190 LFF 198
Score = 104 bits (221), Expect = 5e-022
Identities = 50/64 (78%), Positives = 51/64 (79%)
Frame = -2 / -1
Query: 285 QRRASRTGGPMIHIRX*SHXXCQLPLQ*SSVGAGLSEVSEGSSI*MCRALRTPRRLRPWM 106
QRRASRTG PMIHI * H QL LQ*+SV AG SEVSEG SI*MC ALRTPRRL PWM
Sbjct: 199 QRRASRTGAPMIHIHC*LHWKRQLLLQ*NSVEAGWSEVSEGLSI*MCTALRTPRRLHPWM 20
Query: 105 SQ*S 94
SQ*S
Sbjct: 19 SQ*S 8
>gb|CN128754.1|CN128754 RHOH1_31_H09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_31_H09_A002 3', mRNA sequence
Length = 705
Score = 77.6 bits (163), Expect(2) = 3e-026
Identities = 30/55 (54%), Positives = 35/55 (63%)
Frame = +3 / +1
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +GVVAGI AI GY+SWGPLFGKLFF
Sbjct: 88 EDGDFAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFF 252
Score = 58.8 bits (122), Expect(2) = 3e-026
Identities = 22/31 (70%), Positives = 28/31 (90%)
Frame = +3 / +1
Query: 36 SHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
+HLFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 1 AHLFAVFQGLLKVLAGIDTNFTVTSKASDED 93
>gb|BF317903.1|BF317903 OV1_9_B10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 511
Score = 76.7 bits (161), Expect(2) = 6e-025
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 90 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 254
Score = 55.1 bits (114), Expect(2) = 6e-025
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +3 / +3
Query: 36 SHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
+ LFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 3 TRLFAVFQGLLKVLAGIDTNFTVTSKASDED 95
>gb|BE918570.1|BE918570 OV1_8_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 631
Score = 76.7 bits (161), Expect(2) = 7e-025
Identities = 29/55 (52%), Positives = 35/55 (63%)
Frame = +3 / +3
Query: 120 DDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
+D +F+ELY FKW N +G+VAGI AI GY+SWGPLFGKLFF
Sbjct: 90 EDGDFAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFF 254
Score = 55.1 bits (114), Expect(2) = 7e-025
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +3 / +3
Query: 36 SHLFAVFQGLLKXIAGVDTSFTVTSKGGDDE 128
+ LFAVFQGLLK +AG+DT+FTVTSK D++
Sbjct: 3 TRLFAVFQGLLKVLAGIDTNFTVTSKASDED 95
>gb|CW430835.1|CW430835 fsbb001f144l18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144l18, DNA
sequence
Length = 552
Score = 111 bits (236), Expect = 4e-024
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +3 / +2
Query: 9 QFWXIGGVSSHLFAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXX 188
QFW IGGVS+HLFAVFQG+LK IAG+DT+FTVT+K DD EF ELY FKW
Sbjct: 323 QFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDAEFGELYVFKWTTVLIPPTSI 502
Query: 189 XXXNFIGVVAGIXNAI 236
N +GVVAG A+
Sbjct: 503 LVLNMVGVVAGFSAAL 550
>gb|BI140990.1|BI140990 IP1_41_G10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 110 bits (235), Expect = 6e-024
Identities = 45/60 (75%), Positives = 49/60 (81%)
Frame = +2 / +3
Query: 107 IQGRRRRGVLRALHIQMDDPSDTSDNPAPTELHWSGSWHXXCDXXRI*IMGPPVREALLC 286
IQG RRRGVLRA+HIQMD+PSDTSD+PA TE HWS SW C+ I*IMG PVREALLC
Sbjct: 9 IQGWRRRGVLRAVHIQMDNPSDTSDHPASTEFHWSSSWRFQCNQQWI*IMGAPVREALLC 188
Score = 105 bits (225), Expect = 1e-022
Identities = 46/59 (77%), Positives = 48/59 (81%)
Frame = +1 / +2
Query: 109 PRAETTRSSQSSTHSNGRPF*YLRQPCSY*TSLEW*LAXXMRSXTDMNHGAPCSGSSSL 285
PR ETTRSSQS THSNG+PF*YLR PC Y* SLE *LA M+S DMNHG PCSGSSSL
Sbjct: 11 PRVETTRSSQSCTHSNGQPF*YLRPPCFY*ISLE**LAFPMQSTMDMNHGGPCSGSSSL 187
Score = 105 bits (223), Expect = 3e-022
Identities = 42/59 (71%), Positives = 43/59 (72%)
Frame = +3 / +1
Query: 108 SKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGIXNAIXXGYESWGPLFGKLFF 284
SKGGDDEEFSELYTFKW NFIGVVAG+ NAI GYESWGPLFGKLFF
Sbjct: 10 SKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFF 186
>gb|CL157592.1|CL157592 104_345_10783695_116_31478_255 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783695, DNA
sequence
Length = 738
Score = 109 bits (233), Expect = 1e-023
Identities = 44/80 (55%), Positives = 52/80 (65%)
Frame = +3 / +1
Query: 45 FAVFQGLLKXIAGVDTSFTVTSKGGDDEEFSELYTFKWXXXXXXXXXXXXXNFIGVVAGI 224
FA+ QG LK + GV+T F VT KGGD +EFSELY FKW N +GV+AG+
Sbjct: 1 FALCQGFLKVLGGVNTKFRVTLKGGDTDEFSELYEFKWTWLLVPPMTLLLLNVVGVLAGV 180
Query: 225 XNAIXXGYESWGPLFGKLFF 284
AI GYE+WGPL GKLFF
Sbjct: 181 SKAITDGYEAWGPLIGKLFF 240
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 324,301,868
Number of Sequences: 832831
Number of extensions: 3788835
Number of successful extensions: 347734
Number of sequences better than 1.0e-020: 29
length of database: 163,786,556
effective HSP length: 50
effective length of database: 122,145,006
effective search space used: 5374380264
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)