TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH10g11.yg.2.1
(632 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient se... 124 6e-068
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 185 6e-046
gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-tr... 155 8e-045
gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Me... 111 8e-045
gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation... 73 3e-040
gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorgh... 89 1e-039
gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorgh... 82 1e-027
gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation... 66 1e-023
gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2... 103 3e-021
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 5', mRNA sequence
Length = 580
Score = 124 bits (266), Expect(4) = 6e-068
Identities = 49/65 (75%), Positives = 57/65 (87%)
Frame = -3 / +3
Query: 453 REVEIYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEF 274
++ EIY +KLPG K+GEGKPENQN+A+IFTRGDAVQTIDMNQDNY EEA+KMRNLLEEF
Sbjct: 135 KDQEIYCIKLPGNPKLGEGKPENQNYAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLLEEF 314
Query: 273 NRYYG 259
+G
Sbjct: 315 RNVHG 329
Score = 88.1 bits (186), Expect(4) = 6e-068
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -3 / +3
Query: 264 YGIRKPKILGVREHVFTGSVSSLAWFMSAQETSFVTLGQRVLA 136
+GIRKP ILGVREHVFTGSVSSLA FMS QETSFVTLGQRVLA
Sbjct: 333 HGIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 461
Score = 80.8 bits (170), Expect(4) = 6e-068
Identities = 31/38 (81%), Positives = 36/38 (94%)
Frame = -3 / +3
Query: 129 LKVRMHYGHPDVFDRLWFLGRGGISKASRIINISEDIF 16
LKVRMHYGHPDVFDR++ + RGGISKASR+INISEDI+
Sbjct: 465 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 578
Score = 61.1 bits (127), Expect(3) = 2e-030
Identities = 25/57 (43%), Positives = 38/57 (66%)
Frame = +1 / -3
Query: 274 ELF**VSHL*SFFKVVVLVHINSLNCIAPCEDECMILIFWLSFANLQLSRQLNPIDF 444
+LF *+SH F +VV+L+HI+ LNCI+ ED ++L+ +FA L + RQ N + F
Sbjct: 314 KLFK*ISHFHCFLQVVILIHIDRLNCISSSEDYSIVLVLRFAFAKLGVPRQFNAVYF 144
Score = 59.7 bits (124), Expect(3) = 2e-030
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +2 / -1
Query: 137 ARTRCPRVTKLVSWADMNQAREETEPVKTCSRT 235
ARTRCP+VTKLVS D+N A EET PVKTCS T
Sbjct: 460 ARTRCPKVTKLVSCFDINDASEETLPVKTCSLT 362
Score = 50.6 bits (104), Expect(3) = 2e-030
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = +2 / -1
Query: 14 AKMSSLMLIILDALLIPPRPKNQRRSKTSGWP*CILTL 127
A +SSL+LI DALL+PPR RSKTSG P*CI TL
Sbjct: 580 AYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTL 467
Score = 22.6 bits (43), Expect(4) = 6e-068
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 564 LMKNYEALRVAYVDERQ 514
L++ EALRVA++ E +
Sbjct: 12 LLQRNEALRVAFIHEEE 62
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 185 bits (398), Expect = 6e-046
Identities = 75/77 (97%), Positives = 76/77 (98%)
Frame = -3 / +1
Query: 231 REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 52
REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK
Sbjct: 1 REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 180
Query: 51 ASRIINISEDIFAGFNC 1
AS+ INISEDIFAGFNC
Sbjct: 181 ASKTINISEDIFAGFNC 231
Score = 175 bits (377), Expect = 5e-043
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +2 / -1
Query: 2 QLKPAKMSSLMLIILDALLIPPRPKNQRRSKTSGWP*CILTLSGSARTRCPRVTKLVSWA 181
QLKPA +SSLMLI+ DALLIPPRPKNQRRSKTSGWP*CILTLSGSARTRCPRVTKLVSWA
Sbjct: 230 QLKPANISSLMLIVFDALLIPPRPKNQRRSKTSGWP*CILTLSGSARTRCPRVTKLVSWA 51
Query: 182 DMNQAREETEPVKTCS 229
DMNQAREETEPVKTCS
Sbjct: 50 DMNQAREETEPVKTCS 3
Score = 171 bits (368), Expect = 9e-042
Identities = 70/76 (92%), Positives = 73/76 (96%)
Frame = +1 / -3
Query: 1 TVETSKNVLTNVDYS*CFTDTTSAQKPKTIKNIWVAIMHSDFKWISQNTLPQSDKTCLLG 180
TVETSK +LTNVD *CFTDTTS+QKPKTIKNIWVAIMHSDFKWISQNTLPQSDKTCLLG
Sbjct: 231 TVETSKYILTNVDCF*CFTDTTSSQKPKTIKNIWVAIMHSDFKWISQNTLPQSDKTCLLG 52
Query: 181 RHEPSKRRN*TREDVF 228
RHEPSKRRN*TRED+F
Sbjct: 51 RHEPSKRRN*TREDMF 4
Score = 162 bits (349), Expect = 4e-039
Identities = 69/75 (92%), Positives = 71/75 (94%)
Frame = -1 / +2
Query: 227 NTSSRVQFLLLLGSCLPRRQVLSLWGSVFWLIHLKSECIMATQMFLIVFGFWAEVVSVKH 48
N SSRVQFLLLLGSCLPRRQVLSLWGSVFWLIHLKSECIMATQMFLIVFGFW EVVSVKH
Sbjct: 5 NMSSRVQFLLLLGSCLPRRQVLSLWGSVFWLIHLKSECIMATQMFLIVFGFWDEVVSVKH 184
Query: 47 QE*STLVRTFLLVST 3
Q+ STLVR +LLVST
Sbjct: 185 QKQSTLVRIYLLVST 229
Score = 160 bits (343), Expect = 2e-038
Identities = 71/75 (94%), Positives = 71/75 (94%)
Frame = +3 / -2
Query: 3 S*NQQKCPH*C*LFLMLY*YHLGPKTKDDQKHLGGHNAF*L*VDQPEHAAPE*QNLSPGQ 182
S*NQQ PH*C*LFLMLY*YHL PKTKDDQKHLGGHNAF*L*VDQPEHAAPE*QNLSPGQ
Sbjct: 229 S*NQQIYPH*C*LFLMLY*YHLVPKTKDDQKHLGGHNAF*L*VDQPEHAAPE*QNLSPGQ 50
Query: 183 T*TKQEKKLNP*RRV 227
T*TKQEKKLNP*R V
Sbjct: 49 T*TKQEKKLNP*RHV 5
Score = 150 bits (323), Expect = 1e-035
Identities = 60/75 (80%), Positives = 61/75 (81%)
Frame = -2 / +3
Query: 226 TRLHGFSFFSCLVHVCPGDKFCHXXXXXXXXXXXSQNALWPPRCF*SSLVFGPRWYQ*SI 47
T LHGFSFFSCLVHVCPGDKFCH SQNALWPPRCF*SSLVFG RWYQ*SI
Sbjct: 6 TCLHGFSFFSCLVHVCPGDKFCHSGAACSG*ST*SQNALWPPRCF*SSLVFGTRWYQ*SI 185
Query: 46 KNNQH**GHFCWFQL 2
KNNQH**G+ CWFQL
Sbjct: 186 KNNQH**GYICWFQL 230
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 5', mRNA sequence
Length = 546
Score = 155 bits (332), Expect(2) = 8e-045
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = -3 / +1
Query: 441 IYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNRYY 262
IYR+KLPG +GEGKPENQNHA+IFTRG+ +QTID NQDNY EEALKMRNLL+EF +
Sbjct: 304 IYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDTNQDNYLEEALKMRNLLQEFLTEH 483
Query: 261 GIRKPKILGVREHVFTGSVSS 199
G+R+P ILGVREH+FTGSVSS
Sbjct: 484 GVRRPSILGVREHIFTGSVSS 546
Score = 46.9 bits (96), Expect(2) = 8e-045
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -3 / +1
Query: 627 ACQVYXQQKAKNDPNAXXILELMKNYEALRVAYVDE 520
+CQ Y K NA IL+LM+NY +LRVAY+DE
Sbjct: 79 SCQQYGNDKRAALANAQDILQLMRNYSSLRVAYIDE 186
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 413
Score = 111 bits (238), Expect(2) = 8e-045
Identities = 42/58 (72%), Positives = 52/58 (89%)
Frame = -3 / +2
Query: 441 IYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNR 268
IY++KLPG +GEGKPENQNHA+IFTRG+ +QTIDMNQ++Y EEALKMRNLL+EF +
Sbjct: 101 IYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRNLLQEFQK 274
Score = 90.0 bits (190), Expect(2) = 8e-045
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = -3 / +2
Query: 288 LLEEFNRYYGIRKPKILGVREHVFTGSVSSLAWFMSAQETSFVTLGQRVLAD 133
L E ++ G+R P ILGVREH+FTGSVSSLAWFMS QETSFVT+GQRVLA+
Sbjct: 257 LQEFQKKHDGVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN 412
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 785
Score = 73.5 bits (154), Expect(4) = 3e-040
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -3 / -1
Query: 324 DNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTG 211
DNY EEALKMRNLL+EF +G+R+P ILGVREH+FTG
Sbjct: 548 DNYLEEALKMRNLLQEFLTEHGVRRPSILGVREHIFTG 435
Score = 63.4 bits (132), Expect(4) = 3e-040
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = -3 / -1
Query: 408 IGEGKPENQNHALIFTRGDAVQTIDMNQ 325
+GEGKPENQNHA+IFTRG+ +QTIDMNQ
Sbjct: 716 LGEGKPENQNHAIIFTRGEGLQTIDMNQ 633
Score = 60.6 bits (126), Expect(4) = 3e-040
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -3 / -3
Query: 222 VFTGSVSSLAWFMSAQETSFVTLGQRVLADPLK 124
VF SVSSLAWFMS QE SFVT+GQR+LA+PLK
Sbjct: 369 VFNCSVSSLAWFMSNQEHSFVTIGQRLLANPLK 271
Score = 24.9 bits (48), Expect(4) = 3e-040
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3 / -3
Query: 441 IYRVKLPGELKIGEGK 394
IYR+KLPG G K
Sbjct: 750 IYRIKLPGPCNFGRRK 703
>gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474232, DNA
sequence
Length = 750
Score = 89.0 bits (188), Expect(4) = 1e-039
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = -3 / +3
Query: 444 EIYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDN 319
EIYR+KLPG K+GEGKPENQNHA+IFTRG+A+QTIDMNQ N
Sbjct: 309 EIYRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQVN 434
Score = 82.2 bits (173), Expect(4) = 1e-039
Identities = 32/46 (69%), Positives = 36/46 (78%)
Frame = -3 / +3
Query: 327 QDNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTGSVSSLAW 190
QDNY EEALKMRNLLEEFN +G+R+P ILGVREH+FTG W
Sbjct: 498 QDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTGG*VETLW 635
Score = 27.6 bits (54), Expect(4) = 1e-039
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -3 / +3
Query: 210 SVSSLAWFMSAQE 172
SVSSLAWFMS Q+
Sbjct: 702 SVSSLAWFMSNQK 740
Score = 24.0 bits (46), Expect(4) = 1e-039
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3 / +1
Query: 555 NYEALRVAYVDERQINGNEK 496
+Y LRVAY+DE + +K
Sbjct: 106 SYPGLRVAYIDEVEEREGDK 165
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
sequence
Length = 644
Score = 82.2 bits (173), Expect(2) = 1e-027
Identities = 32/46 (69%), Positives = 36/46 (78%)
Frame = -3 / +1
Query: 327 QDNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTGSVSSLAW 190
QDNY EEALKMRNLLEEFN +G+R+P ILGVREH+FTG W
Sbjct: 46 QDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTGG*VETLW 183
Score = 62.0 bits (129), Expect(2) = 1e-027
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = -3 / +1
Query: 210 SVSSLAWFMSAQETSFVTLGQRVLADPLK 124
SVSSLAWFMS QETSFVT+GQRVLA+PLK
Sbjct: 250 SVSSLAWFMSNQETSFVTIGQRVLANPLK 336
>gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087d20, DNA
sequence
Length = 852
Score = 66.1 bits (138), Expect(2) = 1e-023
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -3 / +2
Query: 324 DNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTG 211
DNY EEA KMRNLLEEF +G +P ILGVREH+FTG
Sbjct: 35 DNYLEEAFKMRNLLEEFLLTHGKSEPTILGVREHIFTG 148
Score = 64.3 bits (134), Expect(2) = 1e-023
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -3 / +3
Query: 216 TGSVSSLAWFMSAQETSFVTLGQRVLADPLK 124
T SVSSLAWFMS+QETSFVT+GQRVLA+PLK
Sbjct: 270 TCSVSSLAWFMSSQETSFVTIGQRVLANPLK 362
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 103 bits (219), Expect = 3e-021
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = -3 / +3
Query: 126 KVRMHYGHPDVFDRLWFLGRGGISKASRIINISEDIFAGFNC 1
+VRMHYGHPDVFDRLWFLGRGGISKAS+ INISEDIFAGFNC
Sbjct: 6 RVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNC 131
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 716,913,906
Number of Sequences: 832831
Number of extensions: 9612144
Number of successful extensions: 66983
Number of sequences better than 1.0e-020: 9
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18784502541
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)