TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH10g11.yg.2.1
         (632 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF074169.1|CF074169  FE1_21_G07.g1_A002 Iron-deficient se...   124   6e-068
gb|CL170430.1|CL170430  104_371_10813804_116_31791_124 Sorgh...   185   6e-046
gb|CD425534.1|CD425534  SA1_12_E03.g1_A002 Salicylic acid-tr...   155   8e-045
gb|BF656184.1|BF656184  FM1_44_A08.b1_A003 Floral-Induced Me...   111   8e-045
gb|CW408904.1|CW408904  fsbb001f102p21k0 Sorghum methylation...    73   3e-040
gb|CW318957.1|CW318957  104_811_11474232_148_35883_090 Sorgh...    89   1e-039
gb|CW133264.1|CW133264  104_517_11116666_148_34813_047 Sorgh...    82   1e-027
gb|CW397990.1|CW397990  fsbb001f087d20f0 Sorghum methylation...    66   1e-023
gb|BG559259.1|BG559259  RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2...   103   3e-021
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
           clone FE1_21_G07_A002 5', mRNA sequence
          Length = 580

 Score =  124 bits (266), Expect(4) = 6e-068
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = -3 / +3

                                                                       
Query: 453 REVEIYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEF 274
           ++ EIY +KLPG  K+GEGKPENQN+A+IFTRGDAVQTIDMNQDNY EEA+KMRNLLEEF
Sbjct: 135 KDQEIYCIKLPGNPKLGEGKPENQNYAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLLEEF 314

                
Query: 273 NRYYG 259
              +G
Sbjct: 315 RNVHG 329

 Score = 88.1 bits (186), Expect(4) = 6e-068
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = -3 / +3

                                                      
Query: 264 YGIRKPKILGVREHVFTGSVSSLAWFMSAQETSFVTLGQRVLA 136
           +GIRKP ILGVREHVFTGSVSSLA FMS QETSFVTLGQRVLA
Sbjct: 333 HGIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 461

 Score = 80.8 bits (170), Expect(4) = 6e-068
 Identities = 31/38 (81%), Positives = 36/38 (94%)
 Frame = -3 / +3

                                                 
Query: 129 LKVRMHYGHPDVFDRLWFLGRGGISKASRIINISEDIF 16
           LKVRMHYGHPDVFDR++ + RGGISKASR+INISEDI+
Sbjct: 465 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 578

 Score = 61.1 bits (127), Expect(3) = 2e-030
 Identities = 25/57 (43%), Positives = 38/57 (66%)
 Frame = +1 / -3

                                                                    
Query: 274 ELF**VSHL*SFFKVVVLVHINSLNCIAPCEDECMILIFWLSFANLQLSRQLNPIDF 444
           +LF *+SH   F +VV+L+HI+ LNCI+  ED  ++L+   +FA L + RQ N + F
Sbjct: 314 KLFK*ISHFHCFLQVVILIHIDRLNCISSSEDYSIVLVLRFAFAKLGVPRQFNAVYF 144

 Score = 59.7 bits (124), Expect(3) = 2e-030
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +2 / -1

                                            
Query: 137 ARTRCPRVTKLVSWADMNQAREETEPVKTCSRT 235
           ARTRCP+VTKLVS  D+N A EET PVKTCS T
Sbjct: 460 ARTRCPKVTKLVSCFDINDASEETLPVKTCSLT 362

 Score = 50.6 bits (104), Expect(3) = 2e-030
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +2 / -1

                                                 
Query: 14  AKMSSLMLIILDALLIPPRPKNQRRSKTSGWP*CILTL 127
           A +SSL+LI  DALL+PPR     RSKTSG P*CI TL
Sbjct: 580 AYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTL 467

 Score = 22.6 bits (43), Expect(4) = 6e-068
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3 / +3

                            
Query: 564 LMKNYEALRVAYVDERQ 514
           L++  EALRVA++ E +
Sbjct: 12  LLQRNEALRVAFIHEEE 62
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
           sequence
          Length = 746

 Score =  185 bits (398), Expect = 6e-046
 Identities = 75/77 (97%), Positives = 76/77 (98%)
 Frame = -3 / +1

                                                                       
Query: 231 REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 52
           REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK
Sbjct: 1   REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 180

                            
Query: 51  ASRIINISEDIFAGFNC 1
           AS+ INISEDIFAGFNC
Sbjct: 181 ASKTINISEDIFAGFNC 231

 Score =  175 bits (377), Expect = 5e-043
 Identities = 72/76 (94%), Positives = 74/76 (97%)
 Frame = +2 / -1

                                                                       
Query: 2   QLKPAKMSSLMLIILDALLIPPRPKNQRRSKTSGWP*CILTLSGSARTRCPRVTKLVSWA 181
           QLKPA +SSLMLI+ DALLIPPRPKNQRRSKTSGWP*CILTLSGSARTRCPRVTKLVSWA
Sbjct: 230 QLKPANISSLMLIVFDALLIPPRPKNQRRSKTSGWP*CILTLSGSARTRCPRVTKLVSWA 51

                           
Query: 182 DMNQAREETEPVKTCS 229
           DMNQAREETEPVKTCS
Sbjct: 50  DMNQAREETEPVKTCS 3

 Score =  171 bits (368), Expect = 9e-042
 Identities = 70/76 (92%), Positives = 73/76 (96%)
 Frame = +1 / -3

                                                                       
Query: 1   TVETSKNVLTNVDYS*CFTDTTSAQKPKTIKNIWVAIMHSDFKWISQNTLPQSDKTCLLG 180
           TVETSK +LTNVD  *CFTDTTS+QKPKTIKNIWVAIMHSDFKWISQNTLPQSDKTCLLG
Sbjct: 231 TVETSKYILTNVDCF*CFTDTTSSQKPKTIKNIWVAIMHSDFKWISQNTLPQSDKTCLLG 52

                           
Query: 181 RHEPSKRRN*TREDVF 228
           RHEPSKRRN*TRED+F
Sbjct: 51  RHEPSKRRN*TREDMF 4

 Score =  162 bits (349), Expect = 4e-039
 Identities = 69/75 (92%), Positives = 71/75 (94%)
 Frame = -1 / +2

                                                                       
Query: 227 NTSSRVQFLLLLGSCLPRRQVLSLWGSVFWLIHLKSECIMATQMFLIVFGFWAEVVSVKH 48
           N SSRVQFLLLLGSCLPRRQVLSLWGSVFWLIHLKSECIMATQMFLIVFGFW EVVSVKH
Sbjct: 5   NMSSRVQFLLLLGSCLPRRQVLSLWGSVFWLIHLKSECIMATQMFLIVFGFWDEVVSVKH 184

                          
Query: 47  QE*STLVRTFLLVST 3
           Q+ STLVR +LLVST
Sbjct: 185 QKQSTLVRIYLLVST 229

 Score =  160 bits (343), Expect = 2e-038
 Identities = 71/75 (94%), Positives = 71/75 (94%)
 Frame = +3 / -2

                                                                       
Query: 3   S*NQQKCPH*C*LFLMLY*YHLGPKTKDDQKHLGGHNAF*L*VDQPEHAAPE*QNLSPGQ 182
           S*NQQ  PH*C*LFLMLY*YHL PKTKDDQKHLGGHNAF*L*VDQPEHAAPE*QNLSPGQ
Sbjct: 229 S*NQQIYPH*C*LFLMLY*YHLVPKTKDDQKHLGGHNAF*L*VDQPEHAAPE*QNLSPGQ 50

                          
Query: 183 T*TKQEKKLNP*RRV 227
           T*TKQEKKLNP*R V
Sbjct: 49  T*TKQEKKLNP*RHV 5

 Score =  150 bits (323), Expect = 1e-035
 Identities = 60/75 (80%), Positives = 61/75 (81%)
 Frame = -2 / +3

                                                                       
Query: 226 TRLHGFSFFSCLVHVCPGDKFCHXXXXXXXXXXXSQNALWPPRCF*SSLVFGPRWYQ*SI 47
           T LHGFSFFSCLVHVCPGDKFCH           SQNALWPPRCF*SSLVFG RWYQ*SI
Sbjct: 6   TCLHGFSFFSCLVHVCPGDKFCHSGAACSG*ST*SQNALWPPRCF*SSLVFGTRWYQ*SI 185

                          
Query: 46  KNNQH**GHFCWFQL 2
           KNNQH**G+ CWFQL
Sbjct: 186 KNNQH**GYICWFQL 230
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
           cDNA clone SA1_12_E03_A002 5', mRNA sequence
          Length = 546

 Score =  155 bits (332), Expect(2) = 8e-045
 Identities = 61/81 (75%), Positives = 71/81 (87%)
 Frame = -3 / +1

                                                                       
Query: 441 IYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNRYY 262
           IYR+KLPG   +GEGKPENQNHA+IFTRG+ +QTID NQDNY EEALKMRNLL+EF   +
Sbjct: 304 IYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDTNQDNYLEEALKMRNLLQEFLTEH 483

                                
Query: 261 GIRKPKILGVREHVFTGSVSS 199
           G+R+P ILGVREH+FTGSVSS
Sbjct: 484 GVRRPSILGVREHIFTGSVSS 546

 Score = 46.9 bits (96), Expect(2) = 8e-045
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = -3 / +1

                                               
Query: 627 ACQVYXQQKAKNDPNAXXILELMKNYEALRVAYVDE 520
           +CQ Y   K     NA  IL+LM+NY +LRVAY+DE
Sbjct: 79  SCQQYGNDKRAALANAQDILQLMRNYSSLRVAYIDE 186
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 413

 Score =  111 bits (238), Expect(2) = 8e-045
 Identities = 42/58 (72%), Positives = 52/58 (89%)
 Frame = -3 / +2

                                                                     
Query: 441 IYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLEEFNR 268
           IY++KLPG   +GEGKPENQNHA+IFTRG+ +QTIDMNQ++Y EEALKMRNLL+EF +
Sbjct: 101 IYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRNLLQEFQK 274

 Score = 90.0 bits (190), Expect(2) = 8e-045
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = -3 / +2

                                                               
Query: 288 LLEEFNRYYGIRKPKILGVREHVFTGSVSSLAWFMSAQETSFVTLGQRVLAD 133
           L E   ++ G+R P ILGVREH+FTGSVSSLAWFMS QETSFVT+GQRVLA+
Sbjct: 257 LQEFQKKHDGVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN 412
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102p21, DNA
           sequence
          Length = 785

 Score = 73.5 bits (154), Expect(4) = 3e-040
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = -3 / -1

                                                 
Query: 324 DNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTG 211
           DNY EEALKMRNLL+EF   +G+R+P ILGVREH+FTG
Sbjct: 548 DNYLEEALKMRNLLQEFLTEHGVRRPSILGVREHIFTG 435

 Score = 63.4 bits (132), Expect(4) = 3e-040
 Identities = 23/28 (82%), Positives = 27/28 (96%)
 Frame = -3 / -1

                                       
Query: 408 IGEGKPENQNHALIFTRGDAVQTIDMNQ 325
           +GEGKPENQNHA+IFTRG+ +QTIDMNQ
Sbjct: 716 LGEGKPENQNHAIIFTRGEGLQTIDMNQ 633

 Score = 60.6 bits (126), Expect(4) = 3e-040
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -3 / -3

                                            
Query: 222 VFTGSVSSLAWFMSAQETSFVTLGQRVLADPLK 124
           VF  SVSSLAWFMS QE SFVT+GQR+LA+PLK
Sbjct: 369 VFNCSVSSLAWFMSNQEHSFVTIGQRLLANPLK 271

 Score = 24.9 bits (48), Expect(4) = 3e-040
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3 / -3

                           
Query: 441 IYRVKLPGELKIGEGK 394
           IYR+KLPG    G  K
Sbjct: 750 IYRIKLPGPCNFGRRK 703
>gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11474232, DNA
           sequence
          Length = 750

 Score = 89.0 bits (188), Expect(4) = 1e-039
 Identities = 34/42 (80%), Positives = 39/42 (92%)
 Frame = -3 / +3

                                                     
Query: 444 EIYRVKLPGELKIGEGKPENQNHALIFTRGDAVQTIDMNQDN 319
           EIYR+KLPG  K+GEGKPENQNHA+IFTRG+A+QTIDMNQ N
Sbjct: 309 EIYRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQVN 434

 Score = 82.2 bits (173), Expect(4) = 1e-039
 Identities = 32/46 (69%), Positives = 36/46 (78%)
 Frame = -3 / +3

                                                         
Query: 327 QDNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTGSVSSLAW 190
           QDNY EEALKMRNLLEEFN  +G+R+P ILGVREH+FTG      W
Sbjct: 498 QDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTGG*VETLW 635

 Score = 27.6 bits (54), Expect(4) = 1e-039
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -3 / +3

                        
Query: 210 SVSSLAWFMSAQE 172
           SVSSLAWFMS Q+
Sbjct: 702 SVSSLAWFMSNQK 740

 Score = 24.0 bits (46), Expect(4) = 1e-039
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3 / +1

                               
Query: 555 NYEALRVAYVDERQINGNEK 496
           +Y  LRVAY+DE +    +K
Sbjct: 106 SYPGLRVAYIDEVEEREGDK 165
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
           sequence
          Length = 644

 Score = 82.2 bits (173), Expect(2) = 1e-027
 Identities = 32/46 (69%), Positives = 36/46 (78%)
 Frame = -3 / +1

                                                         
Query: 327 QDNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTGSVSSLAW 190
           QDNY EEALKMRNLLEEFN  +G+R+P ILGVREH+FTG      W
Sbjct: 46  QDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTGG*VETLW 183

 Score = 62.0 bits (129), Expect(2) = 1e-027
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = -3 / +1

                                        
Query: 210 SVSSLAWFMSAQETSFVTLGQRVLADPLK 124
           SVSSLAWFMS QETSFVT+GQRVLA+PLK
Sbjct: 250 SVSSLAWFMSNQETSFVTIGQRVLANPLK 336
>gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f087d20, DNA
           sequence
          Length = 852

 Score = 66.1 bits (138), Expect(2) = 1e-023
 Identities = 27/38 (71%), Positives = 30/38 (78%)
 Frame = -3 / +2

                                                 
Query: 324 DNYFEEALKMRNLLEEFNRYYGIRKPKILGVREHVFTG 211
           DNY EEA KMRNLLEEF   +G  +P ILGVREH+FTG
Sbjct: 35  DNYLEEAFKMRNLLEEFLLTHGKSEPTILGVREHIFTG 148

 Score = 64.3 bits (134), Expect(2) = 1e-023
 Identities = 27/31 (87%), Positives = 30/31 (96%)
 Frame = -3 / +3

                                          
Query: 216 TGSVSSLAWFMSAQETSFVTLGQRVLADPLK 124
           T SVSSLAWFMS+QETSFVT+GQRVLA+PLK
Sbjct: 270 TCSVSSLAWFMSSQETSFVTIGQRVLANPLK 362
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
           sequence
          Length = 456

 Score =  103 bits (219), Expect = 3e-021
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = -3 / +3

                                                     
Query: 126 KVRMHYGHPDVFDRLWFLGRGGISKASRIINISEDIFAGFNC 1
           +VRMHYGHPDVFDRLWFLGRGGISKAS+ INISEDIFAGFNC
Sbjct: 6   RVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNC 131
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 716,913,906
Number of Sequences: 832831
Number of extensions: 9612144
Number of successful extensions: 66983
Number of sequences better than 1.0e-020: 9
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18784502541
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)