TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation... 355 3e-097
gb|BM325000.1|BM325000 PIC1_38_E07.b1_A002 Pathogen-infecte... 341 5e-093
gb|CW256112.1|CW256112 104_721_11226607_148_35144_032 Sorgh... 315 5e-085
gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) So... 245 9e-066
gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) So... 245 9e-066
gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/c... 246 3e-064
gb|CW173113.1|CW173113 104_584_11156668_148_36547_006 Sorgh... 243 2e-063
gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorgh... 187 1e-046
gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bi... 172 2e-045
gb|CN147848.1|CN147848 WOUND1_52_D08.g1_A002 Wounded leaves... 170 2e-044
gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sor... 168 7e-041
gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorgh... 157 2e-037
gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkal... 132 7e-030
gb|CW265211.1|CW265211 104_734_11231740_148_35264_010 Sorgh... 130 3e-029
gb|CD428230.1|CD428230 ETH1_28_F10.g1_A002 Ethylene-treated... 129 5e-029
>gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 636
Score = 355 bits (770), Expect = 3e-097
Identities = 144/164 (87%), Positives = 149/164 (90%)
Frame = -2 / +2
Query: 506 SDFILMQLQLASVFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSR 327
SDF+LMQLQLASVFFTFSLGTKTHYYG TLLHGGAEYRATGRGFVVFHAKFAENYRLYSR
Sbjct: 2 SDFVLMQLQLASVFFTFSLGTKTHYYGTTLLHGGAEYRATGRGFVVFHAKFAENYRLYSR 181
Query: 326 SHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKI 147
SHFVKG+ELMILL+VYEIFGQSYRGAI YIFIT+SMWFMV TWLFAPFLFNPSGFEWQKI
Sbjct: 182 SHFVKGIELMILLIVYEIFGQSYRGAIAYIFITISMWFMVVTWLFAPFLFNPSGFEWQKI 361
Query: 146 VDDWTDWHKWISNRGGIGVAPXXXXXXXXXXEQEPLRCSGKRGT 15
VDDWTDW+KWISNRGGIGV P EQEPLR SGKRGT
Sbjct: 362 VDDWTDWNKWISNRGGIGVPPEKSWESWWEKEQEPLRHSGKRGT 493
Score = 288 bits (624), Expect = 5e-077
Identities = 126/167 (75%), Positives = 134/167 (80%)
Frame = +1 / -1
Query: 7 AREVPRFPEQRRGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRN 186
+R VPRFPE RGSCSFSHHDSQLFSG TPIPPRLLIHL QSVQSSTIFCHSNPEGLNRN
Sbjct: 501 SRTVPRFPECLRGSCSFSHHDSQLFSGGTPIPPRLLIHLFQSVQSSTIFCHSNPEGLNRN 322
Query: 187 GAKSQVPTMNHMDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANLAW 366
GAKSQV T+NHM+ VMKM IAP YD PN P TK LRE +R*FSANLAW
Sbjct: 321 GAKSQVTTINHMEIVMKMYAIAPRYDCPNISYTMSKIISSMPFTK*LREYNR*FSANLAW 142
Query: 367 NTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCISIKSL 507
TTNPRPVALYSAPP ++V+P***V VP ENVK T+AN SCIS KSL
Sbjct: 141 KTTNPRPVALYSAPPCNSVVP***VLVPRENVKNTDANWSCISTKSL 1
Score = 237 bits (512), Expect = 1e-061
Identities = 101/162 (62%), Positives = 116/162 (71%)
Frame = -1 / +1
Query: 507 E*FYTDAASVGLCFLHILVGNKNSLLRKDVTPWRSGIQSHWTWVCGVPCQIC*ELSTLFP 328
E* T AA V +C LHIL ++NSLLR WRS I S+ W+CG+PCQIC*ELS +F
Sbjct: 1 E*LCTYAAPVSICVLHILSWDQNSLLRNHTVTWRS*I*SYRAWICGLPCQIC*ELSIVFT 180
Query: 327 QPFCQGP*ADDSTSCV*NIWSVI*RGYNLHLHHRIHVVHGGHLALCTIPVQSFWI*VAED 148
+ FC+G DD CV*NIW+VI R Y +H HH HVV+G HLALC IPV SFW+ VAE+
Sbjct: 181 KSFCEGHRTDDFAHCV*NIWAVIPRSYCVHFHHNFHVVYGCHLALCPIPV*SFWVRVAEN 360
Query: 147 CG*LD*LAQVDQQSWRYWCGTREKLGVMVGKRAGAPSLLWEA 22
CG*LD*L VDQ WRYW TREKLGVMVGKRAGA W+A
Sbjct: 361 CG*LD*LE*VDQ*PWRYWGATREKLGVMVGKRAGAS*AFWKA 486
Score = 206 bits (445), Expect = 2e-052
Identities = 89/141 (63%), Positives = 106/141 (75%)
Frame = +3 / -3
Query: 84 WCHTNTSTIADPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI* 263
W H NTST+ DPL+P+SPVIHN LPL+ RRI+QEW KEP +H+PHG DE+V S S+*
Sbjct: 424 WWHPNTSTVTDPLIPVSPVIHNFLPLEPRRIKQEWGKEPGDNHKPHGNCDENVRNSSSV* 245
Query: 264 LTKYFIHN**NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSF 443
L KYFIHN NHQ AL KM + I+SIVLSKFGME HK T S+F SSM SVVVSF
Sbjct: 244 LPKYFIHNEQNHQFDALHKMTS*IQSIVLSKFGMEDHKSTPCSSIFSSSM*QCGSVVVSF 65
Query: 444 CSQRECEENRGQLKLHQYKIT 506
+RECEE+R L+LH+YK+T
Sbjct: 64 GPKRECEEHRC*LELHKYKVT 2
Score = 201 bits (434), Expect = 8e-051
Identities = 100/154 (64%), Positives = 104/154 (67%)
Frame = -3 / +3
Query: 505 VILY*CSFSWPLFSSHSRWEQKLTTTEGRYSMEERNTEPLDVGLWCSMPNLLRTIDFIPA 326
V LY CS S L SSHS KLTTTE MEE N E V LW SMPNLLRTID I
Sbjct: 3 VTLYLCSSS*HLCSSHSLLGPKLTTTEPHCYMEELNIELQGVDLWSSMPNLLRTIDCIHE 182
Query: 325 AILSRALS**FY*LCMKYLVSHIEGL*LTSSSPYPCGSWWALGSLHHSCSILLDLSGRRL 146
IL RA +**F LCMKYL SH E L T SS +PCG W + GSL HSC ILL SGR+L
Sbjct: 183 VIL*RASN**FCSLCMKYLGSHTEELLRTFSSQFPCGLWLSPGSLPHSCLILLGSSGRKL 362
Query: 145 WMTGLIGTSGSAIVEVLVWHQRKAGSHGGKKSRS 44
WMTGL G SGS VEVL HQRK GSHGGKKSRS
Sbjct: 363 WMTGLTGISGSVTVEVLGCHQRKVGSHGGKKSRS 464
Score = 193 bits (415), Expect = 3e-048
Identities = 97/154 (62%), Positives = 107/154 (69%)
Frame = +2 / -2
Query: 44 APALFPTMTPSFSLVPHQYLHDC*STCANQSSHPQSSATQIQKD*TGMVQRAKCPP*TTW 223
APALFPTMTP+FSLV QYLH *ST ++QSSHPQ SAT+ QKD*TGM QRA+ P*TTW
Sbjct: 464 APALFPTMTPNFSLVAPQYLHGY*STYSSQSSHPQFSATRTQKD*TGMGQRAR*QP*TTW 285
Query: 224 IR**RCKL*PLYMTDQIFHTQLVESSAQGP*QNGCGNKVDSSQQIWHGTPQTHVQWLCIP 403
**+C * L MT QIFHTQ +SS + P QN N +DSSQQIWHG PQ H L I
Sbjct: 284 KL**KCTQ*LLGMTAQIFHTQ*AKSSVRCPSQNDFVNTIDSSQQIWHGRPQIHAL*LYIQ 105
Query: 404 LLHGVTSFRSSEFLFPTRM*RKQRPTEAASV*NH 505
LLH FRSSEF RM*R Q T AA V +H
Sbjct: 104 LLHVTVWFRSSEFWSQERM*RTQMLTGAA*VQSH 3
>gb|BM325000.1|BM325000 PIC1_38_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 341 bits (740), Expect = 5e-093
Identities = 137/169 (81%), Positives = 148/169 (87%)
Frame = -2 / +3
Query: 632 RFVXNXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFS 453
R + N LQ A AS S V GFLMALPMMMEIGLERGF ALSD I+M LQLA+VFFTFS
Sbjct: 33 RLIHNHPLQVALASQSLVQLGFLMALPMMMEIGLERGFGQALSDLIMMNLQLATVFFTFS 212
Query: 452 LGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEI 273
LGTKTHYYGR LLHGGA+YR TGRGFVVFHAKFAENYRLYSRSHFVKG+ELMILL+VY++
Sbjct: 213 LGTKTHYYGRMLLHGGAQYRGTGRGFVVFHAKFAENYRLYSRSHFVKGIELMILLIVYQL 392
Query: 272 FGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDW 126
FGQSYR I YIFIT+SMWF+V TWLFAPFLFNPSGFEW KIVDDW+DW
Sbjct: 393 FGQSYRSTIAYIFITISMWFLVLTWLFAPFLFNPSGFEWAKIVDDWSDW 539
Score = 201 bits (433), Expect = 1e-050
Identities = 98/161 (60%), Positives = 111/161 (68%)
Frame = +1 / -3
Query: 121 LCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNHMDTVMKM*VIAPLYD*PNXXXXXXXXX 300
L QS QSSTIF HSNPEGLNR GA S V T NH++ V+K+* + D*PN
Sbjct: 544 LIQSDQSSTIFAHSNPEGLNRKGANSHVNTRNHIEIVIKI*AMVER*D*PNSWYTMSRII 365
Query: 301 XXXPLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN 480
PLTKWLRE*S *FSAN A TTNP PV LY APP SN+LP***V VP ENVK T AN
Sbjct: 364 SSIPLTKWLRE*SL*FSANFA*KTTNPLPVPLY*APP*SNILP***VLVPRENVKNTVAN 185
Query: 481 *SCISIKSLNAVLNPLSKPISIIMGSAIKNPXXTKDXDAXA 603
I I+SL+A NPLS+PISII+G AI+ P T+D +A A
Sbjct: 184 CKFIMIRSLSA*PNPLSRPISIIIGRAIRKPS*TRDCEARA 62
Score = 138 bits (296), Expect = 8e-032
Identities = 64/161 (39%), Positives = 101/161 (62%)
Frame = +3 / -2
Query: 126 PISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*LTKYFIHN**NHQL 305
PI P+I+N PLKS +E + CK P + EPH ++++ +I LT+ ++N NHQL
Sbjct: 539 PIRPIINNFCPLKSGGVE*KGCK*PCQYQEPHRDCNKNIGNG*AIRLTE*LVYNEQNHQL 360
Query: 306 KALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFCSQRECEENRGQLK 485
+K+AA ++SI+L K M+ K +S SV +SM+ +VVS ++ +CE++ QL+
Sbjct: 359 NPFNKVAARVESIILCKLCMKDDKSPTSTSVLSTSMKQHSPIVVSLSAKGKCEKHSSQLQ 180
Query: 486 LHQYKITQCSSESSLQTDFHHHGQRHQKSXXHKRX*RXSXL 608
+H IT C ++SS +T+FHHH + HQK+ +KR * S L
Sbjct: 179 VHHD*IT*CLTKSSFKTNFHHHWKSHQKTKLNKRL*GQSNL 57
Score = 131 bits (280), Expect = 1e-029
Identities = 59/158 (37%), Positives = 95/158 (60%)
Frame = -1 / +2
Query: 600 SCVXVFCAXWIFDGAAHDDGNRFGERIQNCIE*FYTDAASVGLCFLHILVGNKNSLLRKD 421
S + + C+ W DG+++DDGN +RI + +* D ++G C HI + +SLL ++
Sbjct: 65 SGLTISCSAWFSDGSSNDDGNWS*KRIWSGTK*SNHDELAIGYCVFHIFPWH*DSLLWEN 244
Query: 420 VTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQGP*ADDSTSCV*NIWSVI*RGYNL 241
V WR +Q +W +C + C++C EL TL QP C *ADDS C+ I S++ + L
Sbjct: 245 VASWRCSVQRYW*GICRLSCKVCREL*TLLSQPLC*RD*ADDSAHCIPTIRSILSLNHCL 424
Query: 240 HLHHRIHVVHGGHLALCTIPVQSFWI*VAEDCG*LD*L 127
+ ++ ++VV G +A+CT+ +Q I*V ++C *L *L
Sbjct: 425 YFYYNLYVVPGIDMAICTLSIQPLRI*VGKNC**LV*L 538
>gb|CW256112.1|CW256112 104_721_11226607_148_35144_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226607, DNA
sequence
Length = 678
Score = 315 bits (682), Expect = 5e-085
Identities = 120/163 (73%), Positives = 141/163 (86%)
Frame = -2 / +1
Query: 572 GFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTKTHYYGRTLLHGGAEYR 393
G L+ LPMMME+GLE+GF AL++F++MQLQLA VFFTF LGTKTHYYGRT+LHGGA+YR
Sbjct: 13 GMLLVLPMMMEVGLEKGFGRALAEFVIMQLQLAPVFFTFHLGTKTHYYGRTILHGGAKYR 192
Query: 392 ATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWF 213
ATGRGFVV HAKFAENYR+YSRSHFVK LEL+ILLVVY +G SYR + Y+++TVS+WF
Sbjct: 193 ATGRGFVVRHAKFAENYRMYSRSHFVKALELLILLVVYLAYGSSYRSSSLYLYVTVSIWF 372
Query: 212 MVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGVAP 84
+V WLFAPF+FNPS FEW K VDDW DW KW+ NRGGIG+AP
Sbjct: 373 LVFCWLFAPFIFNPSCFEWHKTVDDWIDWWKWMGNRGGIGLAP 501
Score = 188 bits (406), Expect = 6e-047
Identities = 95/178 (53%), Positives = 108/178 (60%)
Frame = +1 / -2
Query: 40 RGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNH 219
R SCS +H SQL SGA PIPP L IH QS+QSST+ CHS +GL GA SQ T NH
Sbjct: 545 RWSCSLTHQASQLCSGANPIPPLLPIHFHQSIQSSTVLCHSKQDGLKIKGANSQQKTRNH 366
Query: 220 MDTVMKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANLAWNTTNPRPVALY 399
++TV + LY+ P TK LRE R*FSAN A TTNP PVALY
Sbjct: 365 IETVTYRYKLELLYELPYAR*TTKRISSSSAFTK*LREYIR*FSANFACRTTNPLPVALY 186
Query: 400 SAPPWSNVLP***VFVPNENVKKTEAN*SCISIKSLNAVLNPLSKPISIIMGSAIKNP 573
APP S VLP***VFVP VK T A+*SCI S +A+ NP S+P SII+G P
Sbjct: 185 FAPP*SIVLP***VFVPR*KVKNTGAS*SCIITNSASALPNPFSRPTSIIIGRTSNIP 12
Score = 152 bits (326), Expect = 6e-036
Identities = 64/160 (40%), Positives = 104/160 (65%)
Frame = +3 / -1
Query: 87 CHTNTSTIADPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEPHGYGDEDVSYSPSI*L 266
C +NT++IA PL P++PVI++L+PLK+ +E + CK+P+ + EP+ D + S+*
Sbjct: 498 C*SNTTSIAHPLPPVNPVINSLVPLKAGWVENKRCKQPTENKEPYRNSDVQIQT*ASV*T 319
Query: 267 TKYFIHN**NHQLKALDKMAAGIKSIVLSKFGMEHHKPTSSGSVFRSSME*RPSVVVSFC 446
++N N QL+ K+ G+ I+LS+ M H+KP+ S S+ S+++ P++VVS C
Sbjct: 318 PIC*VNNQKNKQLQCFHKVTPGVHPIILSELRMPHNKPSPSSSILCSTVKYCPAIVVSLC 139
Query: 447 SQRECEENRGQLKLHQYKITQCSSESSLQTDFHHHGQRHQ 566
S+ + EE R LKLH +K+ QCS++S LQ + HHH + Q
Sbjct: 138 SKMKSEEYRS*LKLHNHKLCQCSAKSFLQANLHHHWENEQ 19
Score = 107 bits (228), Expect = 2e-022
Identities = 58/145 (40%), Positives = 79/145 (54%)
Frame = -1 / +3
Query: 489 AASVGLCFLHILVGNKNSLLRKDVTPWRSGIQSHWTWVCGVPCQIC*ELSTLFPQPFCQG 310
A S C LH NK+SLL +D T S + S+W VC C++ *ELS + P+ C+
Sbjct: 96 ATSASSCILHFSSWNKDSLLWQDNTSRWSKV*SYWERVCCAACEVR*ELSDVLPESLCES 275
Query: 309 P*ADDSTSCV*NIWSVI*RGYNLHLHHRIHVVHGGHLALCTIPVQSFWI*VAEDCG*LD* 130
A S C+ +IW I + + + H +V LA+CT Q +*VA+DC *LD*
Sbjct: 276 TGAAYSFGCLPSIWEFIQKLKFVSVRHCFDMVPCFLLAVCTFYFQPILL*VAQDC**LD* 455
Query: 129 LAQVDQQSWRYWCGTREKLGVMVGK 55
L +VD Q YW T KLG +VG+
Sbjct: 456 LVEVDGQ*RWYWIST*AKLGGLVGE 530
>gb|BI643696.1|BI643696 EM1_19_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 245 bits (530), Expect(2) = 9e-066
Identities = 92/137 (67%), Positives = 115/137 (83%)
Frame = -2 / +2
Query: 500 FILMQLQLASVFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSH 321
FI MQLQ SVFFTFSLGT+THY+GRT+LHGGA+Y+ATGRGFVV H KFAENYRLYSRSH
Sbjct: 8 FITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSRSH 187
Query: 320 FVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVD 141
FVK LE+ +LL+VY +G + G+ ++I IT+S WF+V +WLFAP++FNPSGFEWQK V+
Sbjct: 188 FVKALEVALLLIVYISYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVE 367
Query: 140 DWTDWHKWISNRGGIGV 90
D+ DW W+ +GG+GV
Sbjct: 368 DFDDWTNWLLYKGGVGV 418
Score = 79.4 bits (167), Expect(2) = 1e-031
Identities = 42/63 (66%), Positives = 43/63 (68%)
Frame = +1 / -2
Query: 313 LTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCI 492
LTK LRE*S *FSAN TT P PVALY APP VLP * V VP+E VK TE N SCI
Sbjct: 195 LTK*LRE*SL*FSANFMCRTTKPLPVALYFAPP*RIVLPK*CVLVPSEKVKNTEQNWSCI 16
Query: 493 SIK 501
IK
Sbjct: 15 VIK 7
Score = 78.0 bits (164), Expect(2) = 1e-031
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = +1 / -2
Query: 46 SCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNHMD 225
SCS SH DSQL S TP PP QS +SST+FCHS PEGLN GAKSQ T N +
Sbjct: 462 SCSSSHQDSQLLSPFTPTPPL*SNQFVQSSKSSTVFCHSKPEGLNM*GAKSQDITRNQLL 283
Query: 226 TVMKM 240
V+ +
Sbjct: 282 IVISI 268
Score = 26.3 bits (51), Expect(2) = 9e-066
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 96 WCGTREKLGVMVGKRAGA 43
WC R +LG++VG AGA
Sbjct: 412 WCKGR*QLGILVG*GAGA 465
>gb|BG355549.1|BG355549 EM1_17_G07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 502
Score = 245 bits (530), Expect(2) = 9e-066
Identities = 92/137 (67%), Positives = 115/137 (83%)
Frame = -2 / +2
Query: 500 FILMQLQLASVFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSH 321
FI MQLQ SVFFTFSLGT+THY+GRT+LHGGA+Y+ATGRGFVV H KFAENYRLYSRSH
Sbjct: 8 FITMQLQFCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSRSH 187
Query: 320 FVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVD 141
FVK LE+ +LL+VY +G + G+ ++I IT+S WF+V +WLFAP++FNPSGFEWQK V+
Sbjct: 188 FVKALEVALLLIVYISYGYTKGGSSSFILITISSWFLVMSWLFAPYIFNPSGFEWQKTVE 367
Query: 140 DWTDWHKWISNRGGIGV 90
D+ DW W+ +GG+GV
Sbjct: 368 DFDDWTNWLLYKGGVGV 418
Score = 79.4 bits (167), Expect(2) = 1e-031
Identities = 42/63 (66%), Positives = 43/63 (68%)
Frame = +1 / -2
Query: 313 LTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCI 492
LTK LRE*S *FSAN TT P PVALY APP VLP * V VP+E VK TE N SCI
Sbjct: 195 LTK*LRE*SL*FSANFMCRTTKPLPVALYFAPP*RIVLPK*CVLVPSEKVKNTEQNWSCI 16
Query: 493 SIK 501
IK
Sbjct: 15 VIK 7
Score = 78.0 bits (164), Expect(2) = 1e-031
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = +1 / -2
Query: 46 SCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNHMD 225
SCS SH DSQL S TP PP QS +SST+FCHS PEGLN GAKSQ T N +
Sbjct: 462 SCSSSHQDSQLLSPFTPTPPL*SNQFVQSSKSSTVFCHSKPEGLNM*GAKSQDITRNQLL 283
Query: 226 TVMKM 240
V+ +
Sbjct: 282 IVISI 268
Score = 26.3 bits (51), Expect(2) = 9e-066
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 96 WCGTREKLGVMVGKRAGA 43
WC R +LG++VG AGA
Sbjct: 412 WCKGR*QLGILVG*GAGA 465
>gb|CD219775.1|CD219775 CCC1_58_A07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A07_A007 5', mRNA sequence
Length = 669
Score = 246 bits (531), Expect = 3e-064
Identities = 95/169 (56%), Positives = 122/169 (72%)
Frame = -2 / +3
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N L + G ALPM++E LE GF TA DF+ MQLQ ASVF+TFS+GTK
Sbjct: 159 NAALGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASVFYTFSMGTK 338
Query: 440 THYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQS 261
THYYGRT+LHGGA+YRATGRGFVV H KFAENYRLY+RSHF+K +EL ++L +Y +G +
Sbjct: 339 THYYGRTILHGGAKYRATGRGFVVEHKKFAENYRLYARSHFIKAIELGVILTLYASYGSA 518
Query: 260 YRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWI 114
+ YI +T+S WF+V +W+ APF+FNPSGF+W K +D+ D+ WI
Sbjct: 519 SGNTLVYILLTLSSWFLVSSWILAPFIFNPSGFDWLKNFNDFEDFLNWI 665
Score = 108 bits (231), Expect(2) = 2e-026
Identities = 55/87 (63%), Positives = 59/87 (67%)
Frame = +1 / -3
Query: 313 LTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCI 492
L KWLR *S *FSAN +TT P PVA Y APP VLP** VFVP ENV KT+AN SCI
Sbjct: 466 LMKWLRA*SL*FSANFLCSTTKPLPVARYFAPP*RIVLP**CVFVPMENV*KTDANCSCI 287
Query: 493 SIKSLNAVLNPLSKPISIIMGSAIKNP 573
+KS AV NP S SIIMG A+ P
Sbjct: 286 FMKSHAAVRNPCSSEFSIIMGKAVNRP 206
Score = 31.3 bits (62), Expect(2) = 2e-026
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3 / -2
Query: 114 DPLVPISPVIHNLLPLKSRRIEQEWCKEPSAHHEP 218
DP+ I VI L P+K+R I+ E K P H +P
Sbjct: 665 DPV*KILKVIKILQPVKTRGIKNEGSKNP*RHKKP 561
>gb|CW173113.1|CW173113 104_584_11156668_148_36547_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156668, DNA
sequence
Length = 628
Score = 243 bits (526), Expect = 2e-063
Identities = 92/133 (69%), Positives = 110/133 (82%)
Frame = -2 / +3
Query: 434 YYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYR 255
YYGRT+LHGGA+YR TGRGFVV+HAKFAENYR+YSRSHFVKGLEL+ILLVVY ++G+SYR
Sbjct: 3 YYGRTILHGGAKYRPTGRGFVVYHAKFAENYRMYSRSHFVKGLELLILLVVYLVYGRSYR 182
Query: 254 GAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGVAPXXX 75
+ Y+F+T SMWF+V +WLFAPF+FNPS FEWQK VDDWTDW KW+ NRGGIG++
Sbjct: 183 SSSLYLFVTCSMWFLVASWLFAPFIFNPSCFEWQKTVDDWTDWRKWMGNRGGIGMSVEQS 362
Query: 74 XXXXXXXEQEPLR 36
EQ+ LR
Sbjct: 363 WEAWWLSEQDHLR 401
Score = 92.3 bits (195), Expect(2) = 1e-036
Identities = 40/64 (62%), Positives = 44/64 (68%)
Frame = +1 / -1
Query: 40 RGSCSFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNH 219
R SCS +H SQL S PIPPRL IH QSVQSST+FCHS +GL NGAKS T NH
Sbjct: 397 R*SCSLNHQASQLCSTDMPIPPRLPIHFLQSVQSSTVFCHSKHDGLKINGAKSHEATRNH 218
Query: 220 MDTV 231
M+ V
Sbjct: 217 MEQV 206
Score = 82.6 bits (174), Expect(2) = 1e-036
Identities = 35/42 (83%), Positives = 35/42 (83%)
Frame = +1 / -1
Query: 310 PLTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP** 435
PLTKWLRE R*FSAN AW TTNPRPV LY APPWS VLP**
Sbjct: 127 PLTKWLREYIR*FSANFAWYTTNPRPVGLYFAPPWSIVLP** 2
>gb|CL170431.1|CL170431 104_371_10813804_148_31790_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 656
Score = 187 bits (403), Expect = 1e-046
Identities = 76/133 (57%), Positives = 95/133 (71%)
Frame = -2 / -2
Query: 620 NXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTK 441
N L + G ALPM++E LE GF TA DF+ MQLQ ASVF+TFS+GTK
Sbjct: 400 NAALGAVLNQQFVIQLGLFTALPMIIENSLEHGFLTAAWDFMKMQLQFASVFYTFSMGTK 221
Query: 440 THYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQS 261
THYYGRT+LHGGA+YRATGRGFVV H KFAENYRLY+RSHF+K +EL ++L +Y +G +
Sbjct: 220 THYYGRTILHGGAKYRATGRGFVVEHKKFAENYRLYARSHFIKAIELGVILTLYASYGSA 41
Query: 260 YRGAITYIFITVS 222
+ YI +T+S
Sbjct: 40 SGNTLVYILLTLS 2
Score = 108 bits (231), Expect = 8e-023
Identities = 55/87 (63%), Positives = 59/87 (67%)
Frame = +1 / +3
Query: 313 LTKWLRE*SR*FSANLAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCI 492
L KWLR *S *FSAN +TT P PVA Y APP VLP** VFVP ENV KT+AN SCI
Sbjct: 93 LMKWLRA*SL*FSANFLCSTTKPLPVARYFAPP*RIVLP**CVFVPMENV*KTDANCSCI 272
Query: 493 SIKSLNAVLNPLSKPISIIMGSAIKNP 573
+KS AV NP S SIIMG A+ P
Sbjct: 273 FMKSHAAVRNPCSSEFSIIMGKAVNRP 353
>gb|CF482724.1|CF482724 POL1_8_F04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_F04_A002 5', mRNA sequence
Length = 773
Score = 172 bits (371), Expect(3) = 2e-045
Identities = 64/101 (63%), Positives = 82/101 (81%)
Frame = -2 / +2
Query: 392 ATGRGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWF 213
ATGRGFVV H KFAENYRLYSRSHFVK LE+ +LL+VY +G + G+ ++I IT+S WF
Sbjct: 41 ATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYISYGYTKGGSSSFILITISSWF 220
Query: 212 MVGTWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGV 90
+V +WLFAP++FNPSGFEWQK V+D+ DW W+ +GG+GV
Sbjct: 221 LVMSWLFAPYIFNPSGFEWQKTVEDFDDWTNWLLYKGGVGV 343
Score = 26.3 bits (51), Expect(3) = 2e-045
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 96 WCGTREKLGVMVGKRAGA 43
WC R +LG++VG AGA
Sbjct: 337 WCKGR*QLGILVG*GAGA 390
Score = 23.5 bits (45), Expect(3) = 2e-045
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = -2 / +3
Query: 422 TLLHGGAEYR 393
T+LHGGA+Y+
Sbjct: 12 TILHGGAKYK 41
>gb|CN147848.1|CN147848 WOUND1_52_D08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 5', mRNA sequence
Length = 731
Score = 170 bits (366), Expect(2) = 2e-044
Identities = 62/98 (63%), Positives = 81/98 (82%)
Frame = -2 / +2
Query: 383 RGFVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVG 204
RGFVV H KFAENYR+Y+RSHFVKG+E+ +LLV++ ++G + GA+ YI +++S WFM
Sbjct: 2 RGFVVRHIKFAENYRIYARSHFVKGMEVALLLVIFLVYGFNNGGAVGYILLSISSWFMAL 181
Query: 203 TWLFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGV 90
+WLFAP+LFNPSGFEWQKIV+D+ DW W+ RGGIGV
Sbjct: 182 SWLFAPYLFNPSGFEWQKIVEDFRDWTNWLFYRGGIGV 295
Score = 110 bits (234), Expect = 3e-023
Identities = 56/110 (50%), Positives = 63/110 (57%)
Frame = +1 / -3
Query: 52 SFSHHDSQLFSGATPIPPRLLIHLCQSVQSSTIFCHSNPEGLNRNGAKSQVPTMNHMDTV 231
S SH SQL S TPIPPR QS++SSTIFCHSNP+GLN+ GAKSQ +N +
Sbjct: 333 SSSHQASQLSSPLTPIPPR*NSQFVQSLKSSTIFCHSNPDGLNK*GAKSQDNAINQLLIE 154
Query: 232 MKM*VIAPLYD*PNXXXXXXXXXXXXPLTKWLRE*SR*FSANLAWNTTNP 381
K+* AP P P TKWLR * R*FSANL TT P
Sbjct: 153 SKI*PTAPPLLNPYTRKITNKSATSIPFTKWLRA*IR*FSANLICRTTKP 4
Score = 29.9 bits (59), Expect(2) = 2e-044
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / +1
Query: 99 YWCGTREKLGVMVGKR 52
YWC R KLG +VG+R
Sbjct: 286 YWC*RRRKLGSLVGRR 333
>gb|BF657000.1|BF657000 OV2_19_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 168 bits (362), Expect = 7e-041
Identities = 72/119 (60%), Positives = 82/119 (68%)
Frame = -2 / +2
Query: 659 LDXXXXXXXRFVXNXXLQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQ 480
LD RF+ N L A + V G A+PM+M LE G A+ FI MQLQ
Sbjct: 98 LDYSISRQARFLGNTALDAALNAQFLVQIGIFTAVPMIMGFILELGLMKAIFSFITMQLQ 277
Query: 479 LASVFFTFSLGTKTHYYGRTLLHGGAEYRATGRGFVVFHAKFAENYRLYSRSHFVKGLE 303
SVFFTFSLGT+THY+GRT+LHGGA+Y+ATGRGFVV H KFAENYRLYSRSHFVK LE
Sbjct: 278 FCSVFFTFSLGTRTHYFGRTILHGGAKYKATGRGFVVRHIKFAENYRLYSRSHFVKALE 454
>gb|CW243716.1|CW243716 104_704_11220201_116_37577_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220201, DNA
sequence
Length = 699
Score = 157 bits (337), Expect = 2e-037
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = -2 / -1
Query: 611 LQXAXASXSFVXXGFLMALPMMMEIGLERGFRTALSDFILMQLQLASVFFTFSLGTKTHY 432
L+ A AS SF+ G L LPM+ME+GLE+GFR ALSDFILMQLQLASVFFTFSLGTK HY
Sbjct: 255 LETALASQSFLQLGLLTGLPMVMELGLEKGFRAALSDFILMQLQLASVFFTFSLGTKAHY 76
Query: 431 YGRTLLHGGAEYRATGRGFVVFHA 360
YGRT+LHGGA+YR TGR FVVFHA
Sbjct: 75 YGRTILHGGAKYRPTGRKFVVFHA 4
Score = 108 bits (230), Expect = 1e-022
Identities = 48/82 (58%), Positives = 55/82 (67%)
Frame = +1 / +2
Query: 358 LAWNTTNPRPVALYSAPPWSNVLP***VFVPNENVKKTEAN*SCISIKSLNAVLNPLSKP 537
LAW TTN RPV Y APPW V P** FVP ENVKKT+AN +C+ IKSL A P SKP
Sbjct: 2 LAWKTTNLRPVGRYLAPPWRIVRP**CAFVPRENVKKTDANCNCMRIKSLRAARKPFSKP 181
Query: 538 ISIIMGSAIKNPXXTKDXDAXA 603
SI +G+ + +P KD DA A
Sbjct: 182 SSITIGNPVSSPSWRKD*DARA 247
>gb|CN127234.1|CN127234 RHOH1_21_G03.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G03_A002 5', mRNA sequence
Length = 809
Score = 132 bits (282), Expect = 7e-030
Identities = 46/79 (58%), Positives = 59/79 (74%)
Frame = -2 / +3
Query: 320 FVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVD 141
F +G EL+ LL+VY IF +S+ + ++ IT S WFM WLF PFLFNP+GF WQKIVD
Sbjct: 6 FRQGFELIFLLIVYHIFRRSHVSNVVHVMITYSTWFMAVAWLFTPFLFNPAGFAWQKIVD 185
Query: 140 DWTDWHKWISNRGGIGVAP 84
DW DW++W+ N+GGIGV P
Sbjct: 186 DWADWNRWMKNQGGIGVQP 242
>gb|CW265211.1|CW265211 104_734_11231740_148_35264_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231740, DNA
sequence
Length = 708
Score = 130 bits (278), Expect = 3e-029
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = -2 / +2
Query: 311 GLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWT 132
G EL+ LL+VY IF +S+ + ++ IT S WFM WLF PFLFNP+GF WQKIVDDW
Sbjct: 2 GFELIFLLIVYHIFRRSHVSNVVHVMITYSTWFMAVAWLFTPFLFNPAGFAWQKIVDDWA 181
Query: 131 DWHKWISNRGGIGVAP 84
DW++W+ N+GGIGV P
Sbjct: 182 DWNRWMKNQGGIGVQP 229
>gb|CD428230.1|CD428230 ETH1_28_F10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_F10_A002 5', mRNA sequence
Length = 533
Score = 129 bits (276), Expect = 5e-029
Identities = 54/117 (46%), Positives = 71/117 (60%)
Frame = -2 / +3
Query: 377 FVVFHAKFAENYRLYSRSHFVKGLELMILLVVYEIFGQSYRGAITYIFITVSMWFMVGTW 198
FVV H +FAENYRLY+RSHF+K +EL I+L VY + + YI + +S WF+V +W
Sbjct: 9 FVVQHKRFAENYRLYARSHFIKAIELGIILTVYAAHSVIAKNTLVYIIMNISSWFLVVSW 188
Query: 197 LFAPFLFNPSGFEWQKIVDDWTDWHKWISNRGGIGVAPXXXXXXXXXXEQEPLRCSG 27
+ APF FNPSGF W K V D+ D+ WI GG+ P EQ+ LR +G
Sbjct: 189 IMAPFAFNPSGFGWLKTVYDFDDFMNWIWYPGGLFSKPEQSWEVWWFEEQDHLRTTG 359
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 828,119,108
Number of Sequences: 832831
Number of extensions: 13005904
Number of successful extensions: 101864
Number of sequences better than 1.0e-020: 17
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)