TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG16f05.yg.2.1
(585 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG101757.1|BG101757 EM1_5_H11.b1_A002 Embryo 1 (EM1) Sor... 332 2e-090
gb|BG465749.1|BG465749 RHIZ2_48_B08.b1_A003 Rhizome2 (RHIZ2... 330 8e-090
gb|BE594523.1|BE594523 PI1_34_C11.b1_A002 Pathogen induced ... 310 1e-083
gb|CD429489.1|CD429489 ETH1_4_B03.g1_A002 Ethylene-treated ... 307 1e-082
gb|CW316498.1|CW316498 104_808_11472925_116_35851_063 Sorgh... 98 1e-033
gb|CW316499.1|CW316499 104_808_11472925_148_35855_063 Sorgh... 98 1e-031
gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (L... 118 8e-026
>gb|BG101757.1|BG101757 EM1_5_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 516
Score = 332 bits (720), Expect = 2e-090
Identities = 141/169 (83%), Positives = 146/169 (86%)
Frame = +3 / -1
Query: 21 LLERPNFPEDTTWFF*N*MQKGNEKQRQNHQLSRFPMEILYLGHYIQHRPPILPAGFSTS 200
LLERPNFPE TTWFF*N*M+ NE+QRQNHQL R PMEILYLG YIQH PPILPAGFSTS
Sbjct: 516 LLERPNFPEHTTWFF*N*MRTENEQQRQNHQLPRSPMEILYLGRYIQHHPPILPAGFSTS 337
Query: 201 SQAISWDLFH*CEQPLQIAFH*HLHYGTES*SLLQYRLDD*GSSGT*RME*YILKQ*LLD 380
SQAISWDLFH*CEQP QIAFH*HLHYGTES*SLLQ+RLDD*GSSGT ME*YILKQ*LLD
Sbjct: 336 SQAISWDLFH*CEQPFQIAFH*HLHYGTES*SLLQHRLDD*GSSGTYGME*YILKQ*LLD 157
Query: 381 CKKCEKHFCSSRNQLQPSKNAALCCHY*NLQKGXHFXAE*XXAHPXXXH 527
CKKCEKHFC+SRNQLQP+ AAL CHY*NLQKG HF AE H H
Sbjct: 156 CKKCEKHFCASRNQLQPTMYAALYCHY*NLQKGPHF*AEWLSVHQALVH 10
Score = 331 bits (717), Expect = 6e-090
Identities = 135/168 (80%), Positives = 142/168 (84%)
Frame = -1 / +3
Query: 528 GXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKNRSVFHISYNPRATASEYII 349
G LG AIQ KN LFEDF+SDSTKRH+L+AVADSLK+RSVFHISYNPRATASEYII
Sbjct: 9 GELRLGVRRAIQLKNEALFEDFSSDSTKRHTLSAVADSLKHRSVFHISYNPRATASEYII 188
Query: 348 PYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISEIDPMKWPGSKWRSLLVRWE 169
PY KFLKSLNHPVC+GARINFQCHNEDVSERRSG+VVRISEIDPMKWPGSKWRSLLVRWE
Sbjct: 189 PYHKFLKSLNHPVCVGARINFQCHNEDVSERRSGMVVRISEIDPMKWPGSKWRSLLVRWE 368
Query: 168 DGAECNGQDRVSPWEIEIXXXXXXXXXXXXXXXSKRTKLCPQGNLDVP 25
DGAECNGQDRVSPWEIE+ SKRTKLC QGNLDVP
Sbjct: 369 DGAECNGQDRVSPWEIEVAGGSVSVAHSLSASSSKRTKLCAQGNLDVP 512
Score = 314 bits (680), Expect = 7e-085
Identities = 144/159 (90%), Positives = 147/159 (92%)
Frame = -2 / +1
Query: 497 FSXKMXPFLKISIVTAQSGIL*RL*LIP*RTEVFFTFLTIQELLLQNILFHTLSS*RASI 318
FS KM PFLKIS+VT QSGI RL*LIP* TEVFFTFLTIQELLLQNILFHT+SS*RASI
Sbjct: 40 FSLKMRPFLKISVVTVQSGIHCRL*LIP*STEVFFTFLTIQELLLQNILFHTISS*RASI 219
Query: 317 IQSVLEQGSTFSAIMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRTVLNVMAKIE 138
IQSVLEQGSTFSAIMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGR VLNV AKIE
Sbjct: 220 IQSVLEQGSTFSAIMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRMVLNVTAKIE 399
Query: 137 YLHGKSR*LVVLSLFLIPFLHLVLKEPSCVLREIWTFQQ 21
YLHG+SR*LVVLSL LI HLVLKEPSCVLREIWTFQQ
Sbjct: 400 YLHGRSR*LVVLSLLLILCPHLVLKEPSCVLREIWTFQQ 516
Score = 308 bits (668), Expect = 3e-083
Identities = 137/159 (86%), Positives = 143/159 (89%)
Frame = -3 / +2
Query: 499 YSAXKXXPF*RFQ**QHKAAFFDGCS*FLEEQKCFSHFLQSKSYCFRIYYSIR*VPEEPQ 320
+SA K PF*RFQ**Q+KAA+ GCS*FLE QKCFSHFLQSKSYCFRIYYSI *VPEEPQ
Sbjct: 38 HSA*K*GPF*RFQ**QYKAAYIVGCS*FLEAQKCFSHFLQSKSYCFRIYYSIP*VPEEPQ 217
Query: 319 SSSLYWSKDQLSVP**RC**KAIWSGCSH**NRSHEMAWLEVEKPAGKMGGRC*M*WPR* 140
SSSL WSKDQLSVP**RC**KAIW+GCSH**NRSHEMAWLEVEKPAGKMGG C*M* PR*
Sbjct: 218 SSSLCWSKDQLSVP**RC**KAIWNGCSH**NRSHEMAWLEVEKPAGKMGGWC*M*RPR* 397
Query: 139 SISMGNRDSWWFCLCFSFPFCI*F*KNQVVSSGKFGRSS 23
SISMG+R SWWFCLC SF I*F*KNQVV SGKFGRS+
Sbjct: 398 SISMGDRGSWWFCLCCSFSVRI*F*KNQVVCSGKFGRSN 514
Score = 256 bits (553), Expect(2) = 1e-068
Identities = 114/141 (80%), Positives = 115/141 (81%)
Frame = +2 / -3
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PPA SISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTT PDRLSLTSSLWH*
Sbjct: 430 PPATSISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTIPDRLSLTSSLWH* 251
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALGL*EM*KTLLFFKESATAVKECRFVXXXXX 466
KLILAP QTG*LRLFRNL YGIIYSEAVALGL*EM*KTLL FKESATA CRFV
Sbjct: 250 KLILAPTQTG*LRLFRNLWYGIIYSEAVALGL*EM*KTLLCFKESATADNVCRFVLSLLK 71
Query: 467 XXXRXXFXX*IALXXPXXXXP 529
R F *+AL P P
Sbjct: 70 SSKRASFLS*MALRTPSLSSP 8
Score = 247 bits (533), Expect(2) = 7e-082
Identities = 98/106 (92%), Positives = 101/106 (95%)
Frame = +1 / -2
Query: 22 CWNVQISLRTQLGSFRTRCRKGMRNRDRTTSYLDFPWRYSILAITFSTVLPSYQQASPLR 201
CWNVQISL TQLGSFRTRC + M NRDRTTSYLD PWRYSILA+TFST+LPSYQQASPLR
Sbjct: 515 CWNVQISLSTQLGSFRTRCGQRMSNRDRTTSYLDLPWRYSILAVTFSTILPSYQQASPLR 336
Query: 202 ARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 339
ARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL
Sbjct: 335 ARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 198
Score = 78.5 bits (165), Expect(2) = 7e-082
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = +1 / -2
Query: 385 RNVKNTSVLQGISYSRQRMPLCAVTIEIFKKGXIFXLNSXXXTQ 516
RNVKNTSVLQGISYSRQ MPLC VT EIFKKG IF LN T+
Sbjct: 152 RNVKNTSVLQGISYSRQCMPLCTVTTEIFKKGLIFKLNGSPYTK 21
Score = 24.9 bits (48), Expect(2) = 1e-068
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / -3
Query: 26 GTSKFP*GHN 55
GTSKFP* HN
Sbjct: 511 GTSKFP*AHN 482
>gb|BG465749.1|BG465749 RHIZ2_48_B08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 330 bits (716), Expect = 8e-090
Identities = 136/171 (79%), Positives = 143/171 (83%)
Frame = -1 / +3
Query: 528 GXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKNRSVFHISYNPRATASEYII 349
G LG AIQ KN LFEDF+SDSTKRH+L+AVADSLK+RSVFHISYNPRATASEYII
Sbjct: 9 GELRLGVRRAIQLKNEALFEDFSSDSTKRHTLSAVADSLKHRSVFHISYNPRATASEYII 188
Query: 348 PYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISEIDPMKWPGSKWRSLLVRWE 169
PY KFLKSLNHPVCIGARINFQCHNEDVSERRSG+VVRISEI+PMKWPGSKWRSLLVRWE
Sbjct: 189 PYHKFLKSLNHPVCIGARINFQCHNEDVSERRSGMVVRISEIEPMKWPGSKWRSLLVRWE 368
Query: 168 DGAECNGQDRVSPWEIEIXXXXXXXXXXXXXXXSKRTKLCPQGNLDVPAMW 16
DGAECN QDRVSPWEIEI SKRTKLC QGNLDVP M+
Sbjct: 369 DGAECNSQDRVSPWEIEIAGGSVSVAHSLSASSSKRTKLCAQGNLDVPTMY 521
Score = 328 bits (710), Expect = 5e-089
Identities = 140/170 (82%), Positives = 146/170 (85%)
Frame = +3 / -2
Query: 18 TLLERPNFPEDTTWFF*N*MQKGNEKQRQNHQLSRFPMEILYLGHYIQHRPPILPAGFST 197
TLLE PNFPE TTWFF*N*M+ NE+Q+QNHQLSR PMEILYLG YI+HRPPILPAGFST
Sbjct: 519 TLLEHPNFPEHTTWFF*N*MRTENEQQKQNHQLSRSPMEILYLGCYIRHRPPILPAGFST 340
Query: 198 SSQAISWDLFH*CEQPLQIAFH*HLHYGTES*SLLQYRLDD*GSSGT*RME*YILKQ*LL 377
SSQAISW LFH*CEQP QIAFH*HLHYG ES*SLLQYRLDD*GSSGT ME*YILKQ*LL
Sbjct: 339 SSQAISWVLFH*CEQPFQIAFH*HLHYGIES*SLLQYRLDD*GSSGTYGME*YILKQ*LL 160
Query: 378 DCKKCEKHFCSSRNQLQPSKNAALCCHY*NLQKGXHFXAE*XXAHPXXXH 527
DCKKCEKHFC+SRNQLQP+ AAL CHY*NLQKG HF AE H H
Sbjct: 159 DCKKCEKHFCASRNQLQPTMYAALYCHY*NLQKGPHF*AEWLSVHQALVH 10
Score = 314 bits (680), Expect = 7e-085
Identities = 137/161 (85%), Positives = 145/161 (90%)
Frame = -3 / +2
Query: 499 YSAXKXXPF*RFQ**QHKAAFFDGCS*FLEEQKCFSHFLQSKSYCFRIYYSIR*VPEEPQ 320
+SA K PF*RFQ**Q+KAA+ GCS*FLE QKCFSHFLQSKSYCFRIYYSI *VPEEPQ
Sbjct: 38 HSA*K*GPF*RFQ**QYKAAYIVGCS*FLEAQKCFSHFLQSKSYCFRIYYSIP*VPEEPQ 217
Query: 319 SSSLYWSKDQLSVP**RC**KAIWSGCSH**NRSHEMAWLEVEKPAGKMGGRC*M*WPR* 140
SSSLYWSKDQLS+P**RC**KAIW+GCSH**NR+HEMAWLEVEKPAGKMGGRC M* PR*
Sbjct: 218 SSSLYWSKDQLSMP**RC**KAIWNGCSH**NRTHEMAWLEVEKPAGKMGGRCRM*QPR* 397
Query: 139 SISMGNRDSWWFCLCFSFPFCI*F*KNQVVSSGKFGRSSNV 17
SISMG+RDSWWFC C SF I*F*KNQVV SGKFG S+NV
Sbjct: 398 SISMGDRDSWWFCFCCSFSVRI*F*KNQVVCSGKFGCSNNV 520
Score = 308 bits (666), Expect = 6e-083
Identities = 141/160 (88%), Positives = 145/160 (90%)
Frame = -2 / +1
Query: 497 FSXKMXPFLKISIVTAQSGIL*RL*LIP*RTEVFFTFLTIQELLLQNILFHTLSS*RASI 318
FS KM PFLKIS+VT QSGI RL*LIP* TEVFFTFLTIQELLLQNILFHT+SS*RASI
Sbjct: 40 FSLKMRPFLKISVVTVQSGIHCRL*LIP*STEVFFTFLTIQELLLQNILFHTISS*RASI 219
Query: 317 IQSVLEQGSTFSAIMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRTVLNVMAKIE 138
IQSVLEQGSTF+AIMKMLVKGDLEWLFALVK* P*NGLARSGEACW*DGRTV NV AKIE
Sbjct: 220 IQSVLEQGSTFNAIMKMLVKGDLEWLFALVK*NP*NGLARSGEACW*DGRTVPNVTAKIE 399
Query: 137 YLHGKSR*LVVLSLFLIPFLHLVLKEPSCVLREIWTFQQC 18
YLHG+SR*LVVL L LI HLVLKEPSCVLREIW FQQC
Sbjct: 400 YLHGRSR*LVVLFLLLILCPHLVLKEPSCVLREIWMFQQC 519
Score = 256 bits (553), Expect(2) = 2e-069
Identities = 115/141 (81%), Positives = 116/141 (82%)
Frame = +2 / -1
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PPAISISHGDTLSW LHSAPSSHLTSRLLHFEPGHFMGSISLMRTT PDRLSLTSSLWH*
Sbjct: 430 PPAISISHGDTLSWLLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTIPDRLSLTSSLWH* 251
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALGL*EM*KTLLFFKESATAVKECRFVXXXXX 466
KLILAPIQTG*LRLFRNL YGIIYSEAVALGL*EM*KTLL FKESATA CRFV
Sbjct: 250 KLILAPIQTG*LRLFRNLWYGIIYSEAVALGL*EM*KTLLCFKESATADNVCRFVLSLLK 71
Query: 467 XXXRXXFXX*IALXXPXXXXP 529
R F *+AL P P
Sbjct: 70 SSKRASFLS*MALRTPSLSSP 8
Score = 244 bits (528), Expect(2) = 3e-081
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / -3
Query: 19 HCWNVQISLRTQLGSFRTRCRKGMRNRDRTTSYLDFPWRYSILAITFSTVLPSYQQASPL 198
HCWN+QISL TQLGSFRTRC + M NR+RTTSYLD PWRYSILA+TF TVLPSYQQASPL
Sbjct: 518 HCWNIQISLSTQLGSFRTRCGQRMSNRNRTTSYLDLPWRYSILAVTFGTVLPSYQQASPL 339
Query: 199 RARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 339
RARPFHG YFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL
Sbjct: 338 RARPFHGFYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 198
Score = 78.5 bits (165), Expect(2) = 3e-081
Identities = 34/44 (77%), Positives = 35/44 (79%)
Frame = +1 / -3
Query: 385 RNVKNTSVLQGISYSRQRMPLCAVTIEIFKKGXIFXLNSXXXTQ 516
RNVKNTSVLQGISYSRQ MPLC VT EIFKKG IF LN T+
Sbjct: 152 RNVKNTSVLQGISYSRQCMPLCTVTTEIFKKGLIFKLNGSPYTK 21
Score = 27.6 bits (54), Expect(2) = 2e-069
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 17 HIAGTSKFP*GHN 55
+I GTSKFP* HN
Sbjct: 520 YIVGTSKFP*AHN 482
>gb|BE594523.1|BE594523 PI1_34_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 310 bits (671), Expect = 1e-083
Identities = 123/147 (83%), Positives = 129/147 (87%)
Frame = -1 / +1
Query: 450 TKRHSLTAVADSLKNRSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNE 271
TKRH+L+AVADSLK+RSVFHISYNPRATASEYIIPY KFLKSLNHPVC+GARINFQCHNE
Sbjct: 10 TKRHTLSAVADSLKHRSVFHISYNPRATASEYIIPYHKFLKSLNHPVCVGARINFQCHNE 189
Query: 270 DVSERRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIEIXXXXXXXX 91
DVSERRSG+VVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE+
Sbjct: 190 DVSERRSGMVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIEVAGGSVSVA 369
Query: 90 XXXXXXXSKRTKLCPQGNLDVPAMWNG 10
SKRTKLC QGNLDVP MWNG
Sbjct: 370 HSLSASSSKRTKLCAQGNLDVPTMWNG 450
Score = 308 bits (666), Expect = 6e-083
Identities = 129/148 (87%), Positives = 136/148 (91%)
Frame = +3 / -1
Query: 6 HSHSTLLERPNFPEDTTWFF*N*MQKGNEKQRQNHQLSRFPMEILYLGHYIQHRPPILPA 185
++HSTLLERPNFPE TTWFF*N*M+ NE+QRQNHQL R PMEILYLG YIQH PPILPA
Sbjct: 454 YNHSTLLERPNFPEHTTWFF*N*MRTENEQQRQNHQLPRSPMEILYLGRYIQHHPPILPA 275
Query: 186 GFSTSSQAISWDLFH*CEQPLQIAFH*HLHYGTES*SLLQYRLDD*GSSGT*RME*YILK 365
GFSTSSQAISWDLFH*CEQP QIAFH*HLHYGTES*SLLQ+RLDD*GSSGT ME*YILK
Sbjct: 274 GFSTSSQAISWDLFH*CEQPFQIAFH*HLHYGTES*SLLQHRLDD*GSSGTYGME*YILK 95
Query: 366 Q*LLDCKKCEKHFCSSRNQLQPSKNAAL 449
Q*LLDCKKCEKHFC+SRNQLQP+ AAL
Sbjct: 94 Q*LLDCKKCEKHFCASRNQLQPTMYAAL 11
Score = 301 bits (652), Expect = 5e-081
Identities = 129/148 (87%), Positives = 135/148 (91%)
Frame = -3 / +3
Query: 454 QHKAAFFDGCS*FLEEQKCFSHFLQSKSYCFRIYYSIR*VPEEPQSSSLYWSKDQLSVP* 275
++KAA+ GCS*FLE QKCFSHFLQSKSYCFRIYYSI *VPEEPQSSSL WSKDQLSVP*
Sbjct: 6 RYKAAYIVGCS*FLEAQKCFSHFLQSKSYCFRIYYSIP*VPEEPQSSSLCWSKDQLSVP* 185
Query: 274 *RC**KAIWSGCSH**NRSHEMAWLEVEKPAGKMGGRC*M*WPR*SISMGNRDSWWFCLC 95
*RC**KAIW+GCSH**NRSHEMAWLEVEKPAGKMGG C*M* PR*SISMG+R SWWFCLC
Sbjct: 186 *RC**KAIWNGCSH**NRSHEMAWLEVEKPAGKMGGWC*M*RPR*SISMGDRGSWWFCLC 365
Query: 94 FSFPFCI*F*KNQVVSSGKFGRSSNVEW 11
SF I*F*KNQVV SGKFGRS+NVEW
Sbjct: 366 CSFSVRI*F*KNQVVCSGKFGRSNNVEW 449
Score = 296 bits (640), Expect = 2e-079
Identities = 135/146 (92%), Positives = 137/146 (93%)
Frame = -2 / +2
Query: 449 QSGIL*RL*LIP*RTEVFFTFLTIQELLLQNILFHTLSS*RASIIQSVLEQGSTFSAIMK 270
QSGI RL*LIP* TEVFFTFLTIQELLLQNILFHT+SS*RASIIQSVLEQGSTFSAIMK
Sbjct: 11 QSGIHCRL*LIP*STEVFFTFLTIQELLLQNILFHTISS*RASIIQSVLEQGSTFSAIMK 190
Query: 269 MLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRTVLNVMAKIEYLHGKSR*LVVLSLFL 90
MLVKGDLEWLFALVK*IP*NGLARSGEACW*DGR VLNV AKIEYLHG+SR*LVVLSL L
Sbjct: 191 MLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRMVLNVTAKIEYLHGRSR*LVVLSLLL 370
Query: 89 IPFLHLVLKEPSCVLREIWTFQQCGM 12
I HLVLKEPSCVLREIWTFQQCGM
Sbjct: 371 ILCPHLVLKEPSCVLREIWTFQQCGM 448
Score = 255 bits (552), Expect(2) = 3e-076
Identities = 101/109 (92%), Positives = 104/109 (95%)
Frame = +1 / -2
Query: 13 IPHCWNVQISLRTQLGSFRTRCRKGMRNRDRTTSYLDFPWRYSILAITFSTVLPSYQQAS 192
IPHCWNVQISL TQLGSFRTRC + M NRDRTTSYLD PWRYSILA+TFST+LPSYQQAS
Sbjct: 447 IPHCWNVQISLSTQLGSFRTRCGQRMSNRDRTTSYLDLPWRYSILAVTFSTILPSYQQAS 268
Query: 193 PLRARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 339
PLRARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL
Sbjct: 267 PLRARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 121
Score = 243 bits (526), Expect(2) = 3e-068
Identities = 107/115 (93%), Positives = 107/115 (93%)
Frame = +2 / -3
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PPA SISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTT PDRLSLTSSLWH*
Sbjct: 353 PPATSISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTIPDRLSLTSSLWH* 174
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALGL*EM*KTLLFFKESATAVKECRFV 451
KLILAP QTG*LRLFRNL YGIIYSEAVALGL*EM*KTLL FKESATA CRFV
Sbjct: 173 KLILAPTQTG*LRLFRNLWYGIIYSEAVALGL*EM*KTLLCFKESATADNVCRFV 9
Score = 51.0 bits (105), Expect(2) = 3e-076
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +1 / -2
Query: 385 RNVKNTSVLQGISYSRQRMPLC 450
RNVKNTSVLQGISYSRQ MPLC
Sbjct: 75 RNVKNTSVLQGISYSRQCMPLC 10
Score = 36.3 bits (73), Expect(2) = 3e-068
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2 / -3
Query: 11 PFHIAGTSKFP*GHN 55
PFHI GTSKFP* HN
Sbjct: 449 PFHIVGTSKFP*AHN 405
>gb|CD429489.1|CD429489 ETH1_4_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_B03_A002 5', mRNA sequence
Length = 506
Score = 307 bits (664), Expect = 1e-082
Identities = 123/148 (83%), Positives = 130/148 (87%)
Frame = -1 / +1
Query: 459 SDSTKRHSLTAVADSLKNRSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQC 280
SDSTKRH+L+AVADSLK+RSVFHISYNPRATASEYIIPY KFLKSLNHPVC+GARINFQC
Sbjct: 1 SDSTKRHTLSAVADSLKHRSVFHISYNPRATASEYIIPYHKFLKSLNHPVCVGARINFQC 180
Query: 279 HNEDVSERRSGVVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIEIXXXXX 100
HNEDVSERRSG+VVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIE+
Sbjct: 181 HNEDVSERRSGMVVRISEIDPMKWPGSKWRSLLVRWEDGAECNGQDRVSPWEIEVAGGSV 360
Query: 99 XXXXXXXXXXSKRTKLCPQGNLDVPAMW 16
SKRTKLC QGNLDVP M+
Sbjct: 361 SVAHSLSASSSKRTKLCAQGNLDVPTMY 444
Score = 304 bits (659), Expect = 6e-082
Identities = 128/147 (87%), Positives = 133/147 (90%)
Frame = +3 / -2
Query: 18 TLLERPNFPEDTTWFF*N*MQKGNEKQRQNHQLSRFPMEILYLGHYIQHRPPILPAGFST 197
TLLERPNFPE TTWFF*N*M+ NE+QRQNHQL R PMEILYLG YIQH PPILPAGFST
Sbjct: 442 TLLERPNFPEHTTWFF*N*MRTENEQQRQNHQLPRSPMEILYLGRYIQHHPPILPAGFST 263
Query: 198 SSQAISWDLFH*CEQPLQIAFH*HLHYGTES*SLLQYRLDD*GSSGT*RME*YILKQ*LL 377
SSQAISWDLFH*CEQP QIAFH*HLHYGTES*SLL +RLDD*GSSGT ME*YILKQ*LL
Sbjct: 262 SSQAISWDLFH*CEQPFQIAFH*HLHYGTES*SLLLHRLDD*GSSGTYGME*YILKQ*LL 83
Query: 378 DCKKCEKHFCSSRNQLQPSKNAALCCH 458
DCKKCEKHFC+SRNQLQP+ AAL CH
Sbjct: 82 DCKKCEKHFCASRNQLQPTMYAALYCH 2
Score = 291 bits (630), Expect = 6e-078
Identities = 134/147 (91%), Positives = 136/147 (92%)
Frame = -2 / +2
Query: 458 VTAQSGIL*RL*LIP*RTEVFFTFLTIQELLLQNILFHTLSS*RASIIQSVLEQGSTFSA 279
VT QSGI RL*LIP* TEVFFTFLTIQELLLQNILFHT+SS*RASIIQSV EQGSTFSA
Sbjct: 2 VTVQSGIHCRL*LIP*STEVFFTFLTIQELLLQNILFHTISS*RASIIQSV*EQGSTFSA 181
Query: 278 IMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRTVLNVMAKIEYLHGKSR*LVVLS 99
IMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGR VLNV AKIEYLHG+SR*LVVLS
Sbjct: 182 IMKMLVKGDLEWLFALVK*IP*NGLARSGEACW*DGRMVLNVTAKIEYLHGRSR*LVVLS 361
Query: 98 LFLIPFLHLVLKEPSCVLREIWTFQQC 18
L LI HLVLKEPSCVLREIWTFQQC
Sbjct: 362 LLLILCPHLVLKEPSCVLREIWTFQQC 442
Score = 290 bits (627), Expect = 1e-077
Identities = 128/147 (87%), Positives = 133/147 (90%)
Frame = -3 / +3
Query: 457 *QHKAAFFDGCS*FLEEQKCFSHFLQSKSYCFRIYYSIR*VPEEPQSSSLYWSKDQLSVP 278
*Q+KAA+ GCS*FLE QKCFSHFLQSKSYCFRIYYSI *VPEEPQSSSL SKDQLSVP
Sbjct: 3 *QYKAAYIVGCS*FLEAQKCFSHFLQSKSYCFRIYYSIP*VPEEPQSSSLCRSKDQLSVP 182
Query: 277 **RC**KAIWSGCSH**NRSHEMAWLEVEKPAGKMGGRC*M*WPR*SISMGNRDSWWFCL 98
**RC**KAIW+GCSH**NRSHEMAWLEVEKPAGKMGG C*M* PR*SISMG+R SWWFCL
Sbjct: 183 **RC**KAIWNGCSH**NRSHEMAWLEVEKPAGKMGGWC*M*RPR*SISMGDRGSWWFCL 362
Query: 97 CFSFPFCI*F*KNQVVSSGKFGRSSNV 17
C SF I*F*KNQVV SGKFGRS+NV
Sbjct: 363 CCSFSVRI*F*KNQVVCSGKFGRSNNV 443
Score = 247 bits (533), Expect(2) = 7e-075
Identities = 98/107 (91%), Positives = 101/107 (94%)
Frame = +1 / -3
Query: 19 HCWNVQISLRTQLGSFRTRCRKGMRNRDRTTSYLDFPWRYSILAITFSTVLPSYQQASPL 198
HCWNVQISL TQLGSFRTRC + M NRDRTTSYLD PWRYSILA+TFST+LPSYQQASPL
Sbjct: 441 HCWNVQISLSTQLGSFRTRCGQRMSNRDRTTSYLDLPWRYSILAVTFSTILPSYQQASPL 262
Query: 199 RARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSNTDWMIEALQEL 339
RARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCS TDWMIEALQEL
Sbjct: 261 RARPFHGIYFTNANNHSRSPFTNIFIMALKVDPCSYTDWMIEALQEL 121
Score = 243 bits (526), Expect(2) = 1e-065
Identities = 107/115 (93%), Positives = 107/115 (93%)
Frame = +2 / -1
Query: 107 PPAISISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTTPDRLSLTSSLWH* 286
PPA SISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTT PDRLSLTSSLWH*
Sbjct: 353 PPATSISHGDTLSWPLHSAPSSHLTSRLLHFEPGHFMGSISLMRTTIPDRLSLTSSLWH* 174
Query: 287 KLILAPIQTG*LRLFRNLAYGIIYSEAVALGL*EM*KTLLFFKESATAVKECRFV 451
KLILAP QTG*LRLFRNL YGIIYSEAVALGL*EM*KTLL FKESATA CRFV
Sbjct: 173 KLILAPTQTG*LRLFRNLWYGIIYSEAVALGL*EM*KTLLCFKESATADNVCRFV 9
Score = 55.1 bits (114), Expect(2) = 7e-075
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1 / -3
Query: 385 RNVKNTSVLQGISYSRQRMPLCAVT 459
RNVKNTSVLQGISYSRQ MPLC VT
Sbjct: 75 RNVKNTSVLQGISYSRQCMPLCTVT 1
Score = 27.6 bits (54), Expect(2) = 1e-065
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 17 HIAGTSKFP*GHN 55
+I GTSKFP* HN
Sbjct: 443 YIVGTSKFP*AHN 405
>gb|CW316498.1|CW316498 104_808_11472925_116_35851_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472925, DNA
sequence
Length = 649
Score = 97.7 bits (207), Expect(2) = 1e-033
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = -1 / -1
Query: 375 RATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSER 256
RATASEYIIPY KFLKSLNHPVC+GARINFQCHNEDVSER
Sbjct: 631 RATASEYIIPYHKFLKSLNHPVCVGARINFQCHNEDVSER 512
Score = 85.8 bits (181), Expect(2) = 7e-030
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = -2 / -2
Query: 374 ELLLQNILFHTLSS*RASIIQSVLEQGSTFSAIMKMLVKG 255
ELLLQNILFHT+SS*RASIIQSVLEQGSTFSAIMKMLVKG
Sbjct: 630 ELLLQNILFHTISS*RASIIQSVLEQGSTFSAIMKMLVKG 511
Score = 84.9 bits (179), Expect(2) = 2e-029
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = -3 / -3
Query: 385 LQSKSYCFRIYYSIR*VPEEPQSSSLYWSKDQLSVP**RC**K 257
L +SYCFRIYYSI *VPEEPQSSSL WSKDQLSVP**RC**K
Sbjct: 641 LSLQSYCFRIYYSIP*VPEEPQSSSLCWSKDQLSVP**RC**K 513
Score = 84.0 bits (177), Expect(2) = 4e-031
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = +2 / +3
Query: 257 LSLTSSLWH*KLILAPIQTG*LRLFRNLAYGIIYSEAVAL 376
LSLTSSLWH*KLILAP QTG*LRLFRNL YGIIYSEAVAL
Sbjct: 513 LSLTSSLWH*KLILAPTQTG*LRLFRNLWYGIIYSEAVAL 632
Score = 78.0 bits (164), Expect(2) = 1e-027
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = +3 / +1
Query: 258 FH*HLHYGTES*SLLQYRLDD*GSSGT*RME*YILKQ*L 374
FH*HLHYGTES*SLLQ+RLDD*GSSGT ME*YILKQ*L
Sbjct: 514 FH*HLHYGTES*SLLQHRLDD*GSSGTYGME*YILKQ*L 630
Score = 71.6 bits (150), Expect(2) = 2e-025
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1 / +2
Query: 256 PFTNIFIMALKVDPCSNTDWMIEALQEL 339
PFTNIFIMALKVDPCSNTDWMIEALQEL
Sbjct: 512 PFTNIFIMALKVDPCSNTDWMIEALQEL 595
Score = 71.6 bits (150), Expect(2) = 4e-031
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +1 / +1
Query: 175 SYQQASPLRARPFHGIYFTNANNHSRSP 258
+YQQASPLRARPFHGIYFTNANNHSRSP
Sbjct: 355 AYQQASPLRARPFHGIYFTNANNHSRSP 438
Score = 66.6 bits (139), Expect(2) = 1e-033
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = -1 / -2
Query: 258 RRSGVVVRISEIDPMKWPGSKWRSLLV 178
RRSG+VVRISEIDPMKWPGSKWRSLLV
Sbjct: 438 RRSGMVVRISEIDPMKWPGSKWRSLLV 358
Score = 65.7 bits (137), Expect(2) = 1e-027
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +3 / +3
Query: 159 QHRPPILPAGFSTSSQAISWDLFH*CEQPLQIA 257
Q++ +PAGFSTSSQAISWDLFH*CEQP QIA
Sbjct: 339 QNKLKCIPAGFSTSSQAISWDLFH*CEQPFQIA 437
Score = 65.7 bits (137), Expect(2) = 7e-030
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3 / -1
Query: 256 AIWSGCSH**NRSHEMAWLEVEKPAG 179
AIW+GCSH**NRSHEMAWLEVEKPAG
Sbjct: 436 AIWNGCSH**NRSHEMAWLEVEKPAG 359
Score = 65.2 bits (136), Expect(2) = 2e-025
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +2 / +2
Query: 179 TSRLLHFEPGHFMGSISLMRTTTPDRL 259
TSRLLHFEPGHFMGSISLMRTT PDRL
Sbjct: 359 TSRLLHFEPGHFMGSISLMRTTIPDRL 439
Score = 65.2 bits (136), Expect(2) = 2e-029
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -2 / -3
Query: 257 GDLEWLFALVK*IP*NGLARSGEACW 180
GDLEWLFALVK*IP*NGLARSGEACW
Sbjct: 437 GDLEWLFALVK*IP*NGLARSGEACW 360
>gb|CW316499.1|CW316499 104_808_11472925_148_35855_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472925, DNA
sequence
Length = 754
Score = 97.7 bits (207), Expect(2) = 3e-027
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +3 / -1
Query: 375 LDCKKCEKHFCSSRNQLQPSKNAALCCHY*NLQKGXHFXAE*XXAHPXXXHXHH 536
LDCKKCEKHFC+SRNQLQP+ AAL CHY*NLQKG HF AE H H HH
Sbjct: 202 LDCKKCEKHFCASRNQLQPTMYAALYCHY*NLQKGPHF*AEWLSVHQALVHHHH 41
Score = 97.3 bits (206), Expect(3) = 1e-031
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = -1 / +1
Query: 537 GDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKNRSVFHISYNPR 373
GD G LG AIQ KN LFEDF+SDSTKRH+L+AVADSLK+RSVFHISYNPR
Sbjct: 40 GDDGELRLGVRRAIQLKNEALFEDFSSDSTKRHTLSAVADSLKHRSVFHISYNPR 204
Score = 81.3 bits (171), Expect(2) = 7e-022
Identities = 37/51 (72%), Positives = 38/51 (74%)
Frame = +1 / -2
Query: 385 RNVKNTSVLQGISYSRQRMPLCAVTIEIFKKGXIFXLNSXXXTQXXXTXIT 537
RNVKNTSVLQGISYSRQ MPLC VT EIFKKG IF LN T+ T IT
Sbjct: 192 RNVKNTSVLQGISYSRQCMPLCTVTTEIFKKGLIFKLNGSPYTKP*FTIIT 40
Score = 73.5 bits (154), Expect(2) = 4e-023
Identities = 38/54 (70%), Positives = 39/54 (72%)
Frame = -2 / +2
Query: 536 VMXVXXXWVXXXLFSXKMXPFLKISIVTAQSGIL*RL*LIP*RTEVFFTFLTIQ 375
VM V V FS KM PFLKIS+VT QSGI RL*LIP* TEVFFTFLTIQ
Sbjct: 41 VMMVN*GLVYGEPFSLKMRPFLKISVVTVQSGIHCRL*LIP*STEVFFTFLTIQ 202
Score = 73.0 bits (153), Expect(2) = 1e-021
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = -3 / +3
Query: 499 YSAXKXXPF*RFQ**QHKAAFFDGCS*FLEEQKCFSHFLQSK 374
+SA K PF*RFQ**Q+KAA+ GCS*FLE QKCFSHFLQSK
Sbjct: 78 HSA*K*GPF*RFQ**QYKAAYIVGCS*FLEAQKCFSHFLQSK 203
Score = 57.4 bits (119), Expect(3) = 1e-031
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -1 / +1
Query: 375 RATASEYIIPYAKFLKSLNHPVCIGARINF 286
RATASEYIIPY KFLKS +HPVC+GA F
Sbjct: 655 RATASEYIIPYHKFLKSPHHPVCVGAGSTF 744
Score = 57.0 bits (118), Expect(2) = 4e-023
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -3 / +3
Query: 385 LQSKSYCFRIYYSIR*VPEEPQSSSLYWSK 296
L +SYCFRIYYSI *VPEEP SSSL WS+
Sbjct: 645 LSLQSYCFRIYYSIP*VPEEPSSSSLCWSR 734
Score = 52.4 bits (108), Expect(2) = 1e-021
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -2 / +2
Query: 374 ELLLQNILFHTLSS*RASIIQSVLEQ 297
ELLLQNILFHT+SS*RA IIQSVLEQ
Sbjct: 656 ELLLQNILFHTISS*RALIIQSVLEQ 733
Score = 46.9 bits (96), Expect(2) = 3e-027
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = +2 / -3
Query: 299 APIQTG*LRLFRNLAYGIIYSEAVAL 376
AP QTG* LFRNL YGIIYSEAVAL
Sbjct: 731 APTQTG**GLFRNLWYGIIYSEAVAL 654
Score = 45.1 bits (92), Expect(2) = 7e-022
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3 / -1
Query: 297 LLQYRLDD*GSSGT*RME*YILKQ*L 374
LLQ+RLDD GSSGT ME*YILKQ*L
Sbjct: 733 LLQHRLDDEGSSGTYGME*YILKQ*L 656
Score = 23.1 bits (44), Expect(3) = 1e-031
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1 / +3
Query: 300 ARINFQCH 277
+RINFQCH
Sbjct: 729 SRINFQCH 752
>gb|AW563919.1|AW563919 LG1_275_E08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 455
Score = 118 bits (252), Expect = 8e-026
Identities = 53/140 (37%), Positives = 76/140 (54%)
Frame = -1 / +3
Query: 585 VNKXXXXXXXXVLXXXGDXGXXXLGXXXAIQXKNXXLFEDFNSDSTKRHSLTAVADSLKN 406
VNK VL G+ G LG A Q K ++ + + +L VA ++
Sbjct: 36 VNKKKLVSGDAVLFLRGEDGVLRLGVRRAAQLKIVTPIPALHNQCSSQTTLGNVAQAVAT 215
Query: 405 RSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERRSGVVVRISE 226
R+VFHI YNPR + SE+I+PY KF +SLN P+ +G R + ++D SERR ++ S
Sbjct: 216 RTVFHIYYNPRLSQSEFIVPYWKFTRSLNQPISVGMRCRMRYESDDASERRCTGIIIGSR 395
Query: 225 IDPMKWPGSKWRSLLVRWED 166
W GSKW+ L+VRW+D
Sbjct: 396 EAEPIWYGSKWKCLVVRWDD 455
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 609,316,198
Number of Sequences: 832831
Number of extensions: 7986434
Number of successful extensions: 72414
Number of sequences better than 1.0e-020: 7
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16870158333
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)