TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Me... 210 2e-078
gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient se... 120 2e-067
gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-tr... 177 1e-049
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 186 3e-046
gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation... 75 2e-044
gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorgh... 85 3e-043
gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorgh... 80 1e-028
gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation... 88 6e-025
gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2... 113 3e-024
gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation... 66 2e-023
gb|CW408903.1|CW408903 fsbb001f102p21f0 Sorghum methylation... 90 4e-022
gb|BZ626646.1|BZ626646 ih47e08.b1 WGS-SbicolorF (DH5a methy... 85 5e-022
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 413
Score = 210 bits (454), Expect(2) = 2e-078
Identities = 87/89 (97%), Positives = 89/89 (100%)
Frame = -2 / +2
Query: 580 KKIEKVYYSVLVKASVTKPDEPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGEC 401
KKIEKVYYSVLVKASVTKP+EPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGEC
Sbjct: 14 KKIEKVYYSVLVKASVTKPNEPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGEC 193
Query: 400 LQTIDMNQEHYMEEALKMRNLLQEFEKKH 314
LQTIDMNQEHYMEEALKMRNLLQEF+KKH
Sbjct: 194 LQTIDMNQEHYMEEALKMRNLLQEFQKKH 280
Score = 195 bits (420), Expect(2) = 9e-075
Identities = 83/93 (89%), Positives = 87/93 (93%)
Frame = +2 / -2
Query: 314 MFLLKLLQQISHFQSLLHIVLLIHIYSLEAFASGEYYCMVLIFWLSFT*NGITW*LYLVD 493
MFLLKLLQQISHFQSLLHIVLLIH+YSLE FA+GEYYCMVLIFWLSFT*NGITW* YLVD
Sbjct: 280 MFLLKLLQQISHFQSLLHIVLLIHVYSLETFAAGEYYCMVLIFWLSFT*NGITW*FYLVD 101
Query: 494 DLIKALTRLIRFCNRSLHQH*VVNLFNLLXSIL 592
DLIKALTRLIRFCNRSL H VVNLFNLL S++
Sbjct: 100 DLIKALTRLIRFCNRSLD*HGVVNLFNLLVSLV 2
Score = 190 bits (410), Expect(2) = 5e-072
Identities = 80/88 (90%), Positives = 82/88 (93%)
Frame = -1 / +1
Query: 578 ED*KGLLLSVGEGFCYKT**AWSEP*SGHLQDKATR*CHFR*RKARKSEPCNNIHQRRMP 399
ED*KGLLL V +GFCYKT**AWSEP*SGHLQDK TR*CHFR*RKARKSEPCNNIH RRM
Sbjct: 16 ED*KGLLLRVSQGFCYKT**AWSEP*SGHLQDKTTR*CHFR*RKARKSEPCNNIHPRRMS 195
Query: 398 PNYRYESGALYGGGFENEKSAARV*EET 315
PNYR+ESGALYGGGFENEKSAARV EET
Sbjct: 196 PNYRHESGALYGGGFENEKSAARVSEET 279
Score = 179 bits (385), Expect(2) = 1e-068
Identities = 79/89 (88%), Positives = 80/89 (89%)
Frame = +1 / -1
Query: 313 HVSSQTLAADFSFSKPPPYSAPDSYL*FGGIRLW*ILLHGSDFLAFLHLKWHYLVALSCR 492
HVSS+TLAADFSFSKPPPYSAPDS L*FG IR *ILLHGSDFLAFLHLKWHYLV LSCR
Sbjct: 281 HVSSETLAADFSFSKPPPYSAPDSCL*FGDIRRG*ILLHGSDFLAFLHLKWHYLVVLSCR 102
Query: 493 *PDQGSDQAHQVL*QKPSPTLSSKPFQSS 579
*PDQGSDQAH VL*QKP T SSKPFQSS
Sbjct: 101 *PDQGSDQAH*VL*QKP*LTRSSKPFQSS 15
Score = 172 bits (371), Expect = 4e-042
Identities = 81/89 (91%), Positives = 82/89 (92%)
Frame = -3 / +3
Query: 579 RRLKRFTTQCW*RLLLQNLMSLVRALIRSSTR*SYQVMPF*VKESQKIRTMQ*YSPEANA 400
RRLKRFTT C RLLLQNLMSLVRALIRSSTR*+YQVMPF*VKESQKIRTMQ*YSP AN
Sbjct: 15 RRLKRFTTPC*SRLLLQNLMSLVRALIRSSTR*NYQVMPF*VKESQKIRTMQ*YSPAANV 194
Query: 399 SKL*I*IRSTIWRRL*K*EICCKSLRRNM 313
SKL* *IRSTIWRRL*K*EICCKS RRNM
Sbjct: 195 SKL*T*IRSTIWRRL*K*EICCKSFRRNM 281
Score = 133 bits (284), Expect = 4e-030
Identities = 62/88 (70%), Positives = 62/88 (70%)
Frame = +3 / -3
Query: 315 CFFSNSCSRFLIFKAXXXXXXXXXXXVWRHSPLVNIIAWF*FSGFPSPKMALPGSFIL*M 494
CFF NSCSRFLIFKA VWRHSP VNIIAWF*FSGFPSPKMALPGSFIL*M
Sbjct: 279 CFF*NSCSRFLIFKASSI*CS*FMSIVWRHSPRVNIIAWF*FSGFPSPKMALPGSFIL*M 100
Query: 495 T*SRL*PGSSGFVXXXXXXXXXXXXSIF 578
T*SRL*PGS GFV SIF
Sbjct: 99 T*SRL*PGSLGFVTEALTNTE**TFSIF 16
Score = 106 bits (227), Expect(2) = 9e-075
Identities = 44/46 (95%), Positives = 44/46 (95%)
Frame = +3 / -3
Query: 186 LASTRCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTPCFF 323
LASTRCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTP F
Sbjct: 411 LASTRCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTPSCF 274
Score = 105 bits (224), Expect = 8e-022
Identities = 43/60 (71%), Positives = 47/60 (78%)
Frame = -1 / +1
Query: 365 GGGFENEKSAARV*EETWSEISIDAWSQRTHIYGQCVIPCMVHVKSGN*FRNNWTTSACQ 186
GG + +A E WSEISI+ WSQRTHIYGQCVIPCMVHVKSGN*F +NWTTSACQ
Sbjct: 232 GGFENEKSAARVSEET*WSEISINTWSQRTHIYGQCVIPCMVHVKSGN*FCDNWTTSACQ 411
Score = 103 bits (219), Expect(2) = 2e-078
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = -2 / +2
Query: 325 EKKHGVRYPSMLGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN 185
+K GVRYPS+LGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN
Sbjct: 272 KKHDGVRYPSILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLAN 412
Score = 102 bits (218), Expect(2) = 1e-068
Identities = 42/52 (80%), Positives = 46/52 (88%)
Frame = +2 / -2
Query: 185 IGKHSLSNCYETSFLI*HEPCKG*HTARKYVFSDSKHRWISHSMFLLKLLQQ 340
IGKHSLSNC++TSFLI*HEPCKG*HTARKYVFSDSK+ WISHS+ L L Q
Sbjct: 412 IGKHSLSNCHKTSFLI*HEPCKG*HTARKYVFSDSKY*WISHSIMFLLKLLQ 257
Score = 102 bits (217), Expect(2) = 5e-072
Identities = 43/52 (82%), Positives = 44/52 (84%)
Frame = -3 / +3
Query: 339 CCKSLRRNME*DIHRCLESENTYLRAVCHPLHGSCQIRKLVS*QLDNECLPI 184
C R ME*DIH+ LESENTYLRAVCHPLHGSCQIRKLV *QLDNECLPI
Sbjct: 258 CKSFRRNMME*DIHQYLESENTYLRAVCHPLHGSCQIRKLVL*QLDNECLPI 413
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 5', mRNA sequence
Length = 580
Score = 120 bits (257), Expect(4) = 2e-067
Identities = 48/64 (75%), Positives = 56/64 (87%)
Frame = -2 / +3
Query: 502 DQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRNLLQEFE 323
DQ IY IKLPGN LGEGKPENQN+AIIFTRG+ +QTIDMNQ++Y+EEA+KMRNLL+EF
Sbjct: 138 DQEIYCIKLPGNPKLGEGKPENQNYAIIFTRGDAVQTIDMNQDNYLEEAMKMRNLLEEFR 317
Query: 322 KKHG 311
HG
Sbjct: 318 NVHG 329
Score = 85.8 bits (181), Expect(4) = 2e-067
Identities = 35/43 (81%), Positives = 40/43 (93%)
Frame = -2 / +3
Query: 316 HGVRYPSMLGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLA 188
HG+R P++LGVREH+FTGSVSSLA FMS QETSFVT+GQRVLA
Sbjct: 333 HGIRKPTILGVREHVFTGSVSSLASFMSKQETSFVTLGQRVLA 461
Score = 84.5 bits (178), Expect(4) = 2e-067
Identities = 29/38 (76%), Positives = 37/38 (97%)
Frame = -2 / +3
Query: 181 LRVRFHYGHPDIFDRLFHITRGGVSKASKIINLSEDIF 68
L+VR HYGHPD+FDR+FHITRGG+SKAS++IN+SEDI+
Sbjct: 465 LKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIY 578
Score = 64.8 bits (135), Expect(4) = 2e-027
Identities = 27/44 (61%), Positives = 32/44 (72%)
Frame = +3 / -1
Query: 189 ASTRCPIVTKLVS*FDMNHARDDTLPVNMCSLTPSIDGYLTPCF 320
A TRCP VTKLVS FD+N A ++TLPV CSLTP + G+ P F
Sbjct: 460 ARTRCPKVTKLVSCFDINDASEETLPVKTCSLTPRMVGFRMPWF 329
Score = 40.5 bits (82), Expect(4) = 2e-027
Identities = 24/38 (63%), Positives = 25/38 (65%)
Frame = +3 / -1
Query: 66 ANMSSLRLIILDALLTPPLVMWKRRSKISG*P**KRTL 179
A +SSL LI DALL PP VM RSK SG P* RTL
Sbjct: 580 AYISSLILITRDALLMPPRVM*NIRSKTSGCP*CIRTL 467
Score = 38.6 bits (78), Expect(4) = 2e-027
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +3 / -1
Query: 405 SPLVNIIAWF*FSGFPSPKMALPGSFIL*MT*S 503
SP V IIA F FSG PSP + PGS + ++*S
Sbjct: 235 SPRVKIIA*FWFSGLPSPSLGFPGSLMQYIS*S 137
Score = 35.0 bits (70), Expect(4) = 2e-027
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1 / -2
Query: 292 ASMDISLHVSSQTLAADFSFSKPPPYSAPDSY 387
AS+ H +TL +FSFS PP S PDSY
Sbjct: 348 ASVCHGFHEHYETLQVNFSFSLLPPSSYPDSY 253
Score = 23.5 bits (45), Expect(4) = 2e-067
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2 / +3
Query: 580 KKIEKVYYSVLVKASVTKPDE 518
K K YYS LVKA V D+
Sbjct: 81 KATTKEYYSKLVKADVHGKDQ 143
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 5', mRNA sequence
Length = 546
Score = 177 bits (382), Expect(2) = 1e-049
Identities = 75/90 (83%), Positives = 83/90 (92%)
Frame = -2 / +1
Query: 520 EPGQSLDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQEHYMEEALKMRN 341
+P Q+LDQVIY+IKLPG AILGEGKPENQNHAIIFTRGE LQTID NQ++Y+EEALKMRN
Sbjct: 277 DPIQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDTNQDNYLEEALKMRN 456
Query: 340 LLQEFEKKHGVRYPSMLGVREHIFTGSVSS 251
LLQEF +HGVR PS+LGVREHIFTGSVSS
Sbjct: 457 LLQEFLTEHGVRRPSILGVREHIFTGSVSS 546
Score = 117 bits (250), Expect = 2e-025
Identities = 49/93 (52%), Positives = 65/93 (69%)
Frame = +2 / -1
Query: 251 G*HTARKYVFSDSKHRWISHSMFLLKLLQQISHFQSLLHIVLLIHIYSLEAFASGEYYCM 430
G +TA K V S+SK+RW HSM +LL+QISHF+S IV+L+ IY L+AF +GE YCM
Sbjct: 546 GRYTASKNVLSNSKYRWTPHSMLRKELLEQISHFKSFFQIVVLVRIYGLQAFTTGENYCM 367
Query: 431 VLIFWLSFT*NGITW*LYLVDDLIKALTRLIRF 529
+L+F LSF+ N W Y +D+LIK L + RF
Sbjct: 366 ILVFGLSFSQNCRAWKFYPIDNLIKILNGVCRF 268
Score = 114 bits (244), Expect = 1e-024
Identities = 56/91 (61%), Positives = 62/91 (68%)
Frame = +3 / -2
Query: 252 DDTLPVNMCSLTPSIDGYLTPCFFSNSCSRFLIFKAXXXXXXXXXXXVWRHSPLVNIIAW 431
+DTLPV MCSLTPSIDG TPC NS SRFLI +A V + SP V IIA
Sbjct: 545 EDTLPVKMCSLTPSIDGRRTPCSVRNSWSRFLILRASSK*LSWFVSMVCKPSPRVKIIA* 366
Query: 432 F*FSGFPSPKMALPGSFIL*MT*SRL*PGSS 524
F FSGFPSPK+A PGSFI *+T*SR * GS+
Sbjct: 365 FWFSGFPSPKIAGPGSFIR*IT*SRF*MGSA 273
Score = 40.5 bits (82), Expect(2) = 1e-049
Identities = 20/50 (40%), Positives = 21/50 (42%)
Frame = -2 / +1
Query: 754 CXXXADMXXXYXXXXXXYGIQXXXXEXXAHDILRLXTXYPSXXXAYIDEV 605
C ADM Y YG A DIL+L Y S AYIDEV
Sbjct: 40 CEAVADMKFTYVVSCQQYGNDKRAALANAQDILQLMRNYSSLRVAYIDEV 189
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 186 bits (401), Expect = 3e-046
Identities = 73/90 (81%), Positives = 83/90 (92%)
Frame = -2 / +1
Query: 283 REHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHYGHPDIFDRLFHITRGGVSK 104
REH+FTGSVSSLAWFMS QETSFVT+GQRVLA+PL+VR HYGHPD+FDRL+ + RGG+SK
Sbjct: 1 REHVFTGSVSSLAWFMSAQETSFVTLGQRVLADPLKVRMHYGHPDVFDRLWFLGRGGISK 180
Query: 103 ASKIINLSEDIFAGFNSTLREGNVTHHEYL 14
ASK IN+SEDIFAGFN TLR GNVTHHEY+
Sbjct: 181 ASKTINISEDIFAGFNCTLRGGNVTHHEYI 270
Score = 118 bits (253), Expect = 8e-026
Identities = 56/88 (63%), Positives = 63/88 (71%)
Frame = +3 / -1
Query: 18 YSW*VTLPSRNVELNPANMSSLRLIILDALLTPPLVMWKRRSKISG*P**KRTLNGLAST 197
YSW VTLP R V+L PAN+SSL LI+ DALL PP +RRSK SG P* TL+G A T
Sbjct: 266 YSWCVTLPPRRVQLKPANISSLMLIVFDALLIPPRPKNQRRSKTSGWP*CILTLSGSART 87
Query: 198 RCPIVTKLVS*FDMNHARDDTLPVNMCS 281
RCP VTKLVS DMN AR++T PV CS
Sbjct: 86 RCPRVTKLVSWADMNQAREETEPVKTCS 3
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 785
Score = 75.3 bits (158), Expect(4) = 2e-044
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -2 / -1
Query: 376 EHYMEEALKMRNLLQEFEKKHGVRYPSMLGVREHIFTG 263
++Y+EEALKMRNLLQEF +HGVR PS+LGVREHIFTG
Sbjct: 548 DNYLEEALKMRNLLQEFLTEHGVRRPSILGVREHIFTG 435
Score = 70.3 bits (147), Expect(4) = 2e-044
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = -2 / -1
Query: 466 AILGEGKPENQNHAIIFTRGECLQTIDMNQ 377
AILGEGKPENQNHAIIFTRGE LQTIDMNQ
Sbjct: 722 AILGEGKPENQNHAIIFTRGEGLQTIDMNQ 633
Score = 65.7 bits (137), Expect(4) = 2e-044
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = -2 / -3
Query: 274 IFTGSVSSLAWFMSNQETSFVTIGQRVLANPLR 176
+F SVSSLAWFMSNQE SFVTIGQR+LANPL+
Sbjct: 369 VFNCSVSSLAWFMSNQEHSFVTIGQRLLANPLK 271
Score = 57.4 bits (119), Expect(3) = 1e-027
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = +3 / +1
Query: 261 LPVNMCSLTPSIDGYLTPCFFSNSCSRFLIFKA 359
LPV MCSLTPSIDG TPC NS SRFLI +A
Sbjct: 433 LPVKMCSLTPSIDGRRTPCSVRNSWSRFLILRA 531
Score = 54.2 bits (112), Expect(3) = 1e-027
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3 / +2
Query: 183 GLASTRCPIVTKLVS*FDMNHARDDTL 263
G A RCPIVTKL S*FDMNHAR+DTL
Sbjct: 278 GFARRRCPIVTKLCS*FDMNHAREDTL 358
Score = 50.6 bits (104), Expect(3) = 1e-027
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2 / +3
Query: 377 LIHIYSLEAFASGEYYCMVLIFWLSFT*N 463
L+HIY L+AF +GE YCM+L+F LSF+ N
Sbjct: 633 LVHIYGLQAFTTGENYCMILVFGLSFSQN 719
Score = 25.4 bits (49), Expect(4) = 2e-044
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / -3
Query: 505 LDQVIYKIKLPGNAILGEGK 446
+ +VIY+IKLPG G K
Sbjct: 762 VSKVIYRIKLPGPCNFGRRK 703
>gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474232, DNA
sequence
Length = 750
Score = 85.4 bits (180), Expect(5) = 3e-043
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = -2 / +3
Query: 493 IYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQ 377
IY+IKLPG A LGEGKPENQNHAIIFTRGE LQTIDMNQ
Sbjct: 312 IYRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQ 428
Score = 80.3 bits (169), Expect(5) = 3e-043
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = -2 / +3
Query: 403 CLQTIDMNQEHYMEEALKMRNLLQEFEKKHGVRYPSMLGVREHIFTGSVSSLAW 242
C+ ++ Q++Y+EEALKMRNLL+EF + HGVR P++LGVREHIFTG W
Sbjct: 474 CVVFMNYLQDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTGG*VETLW 635
Score = 31.3 bits (62), Expect(5) = 3e-043
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +3
Query: 262 SVSSLAWFMSNQE 224
SVSSLAWFMSNQ+
Sbjct: 702 SVSSLAWFMSNQK 740
Score = 27.6 bits (54), Expect(5) = 3e-043
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 577 KIEKVYYSVLVKA 539
K++KV+YSVLVKA
Sbjct: 163 KVQKVFYSVLVKA 201
Score = 25.8 bits (50), Expect(5) = 3e-043
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2 / +1
Query: 640 YPSXXXAYIDEVXAPXQDRXKKI 572
YP AYIDEV D+ +K+
Sbjct: 109 YPGLRVAYIDEVEEREGDKVQKV 177
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
sequence
Length = 644
Score = 80.3 bits (169), Expect(2) = 1e-028
Identities = 31/54 (57%), Positives = 41/54 (75%)
Frame = -2 / +1
Query: 403 CLQTIDMNQEHYMEEALKMRNLLQEFEKKHGVRYPSMLGVREHIFTGSVSSLAW 242
C+ ++ Q++Y+EEALKMRNLL+EF + HGVR P++LGVREHIFTG W
Sbjct: 22 CVVFMNYLQDNYLEEALKMRNLLEEFNENHGVRQPTILGVREHIFTGG*VETLW 183
Score = 67.5 bits (141), Expect(2) = 1e-028
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = -2 / +1
Query: 262 SVSSLAWFMSNQETSFVTIGQRVLANPLR 176
SVSSLAWFMSNQETSFVTIGQRVLANPL+
Sbjct: 250 SVSSLAWFMSNQETSFVTIGQRVLANPLK 336
>gb|CW473573.1|CW473573 fsbb001f229a03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229a03, DNA
sequence
Length = 646
Score = 88.1 bits (186), Expect(2) = 6e-025
Identities = 34/39 (87%), Positives = 37/39 (94%)
Frame = -2 / +2
Query: 178 RVRFHYGHPDIFDRLFHITRGGVSKASKIINLSEDIFAG 62
RVRFHYGHPD+FDR+FHITRGG+SKAS INLSEDIFAG
Sbjct: 263 RVRFHYGHPDVFDRIFHITRGGISKASCGINLSEDIFAG 379
Score = 47.3 bits (97), Expect(2) = 6e-025
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2 / +3
Query: 85 LSEDIFAGFNSTLREGNVTHHEYL 14
LS +F+GFNSTLR GNVTHHEY+
Sbjct: 474 LS*ILFSGFNSTLRRGNVTHHEYI 545
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 113 bits (242), Expect = 3e-024
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = -2 / +3
Query: 178 RVRFHYGHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYL 14
RVR HYGHPD+FDRL+ + RGG+SKASK IN+SEDIFAGFN TLR GNVTHHEY+
Sbjct: 6 RVRMHYGHPDVFDRLWFLGRGGISKASKTINISEDIFAGFNCTLRGGNVTHHEYI 170
>gb|CW397990.1|CW397990 fsbb001f087d20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087d20, DNA
sequence
Length = 852
Score = 66.1 bits (138), Expect(2) = 2e-023
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = -2 / +3
Query: 268 TGSVSSLAWFMSNQETSFVTIGQRVLANPLR 176
T SVSSLAWFMS+QETSFVTIGQRVLANPL+
Sbjct: 270 TCSVSSLAWFMSSQETSFVTIGQRVLANPLK 362
Score = 63.8 bits (133), Expect(2) = 2e-023
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = -2 / +2
Query: 376 EHYMEEALKMRNLLQEFEKKHGVRYPSMLGVREHIFTG 263
++Y+EEA KMRNLL+EF HG P++LGVREHIFTG
Sbjct: 35 DNYLEEAFKMRNLLEEFLLTHGKSEPTILGVREHIFTG 148
>gb|CW408903.1|CW408903 fsbb001f102p21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 704
Score = 90.0 bits (190), Expect(3) = 4e-022
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -2 / +2
Query: 505 LDQVIYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQ 377
+ +VIY+IKLPG AILGEGKPENQNHAIIFTRGE LQTIDMNQ
Sbjct: 545 VSKVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDMNQ 673
Score = 31.8 bits (63), Expect(3) = 4e-022
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2 / +3
Query: 580 KKIEKVYYSVLVKASVTKPDEPGQSLDQV 494
KK+E YYS LVK ++TK E + +
Sbjct: 312 KKMETAYYSTLVKVALTKDSESADPIQNL 398
Score = 24.9 bits (48), Expect(3) = 4e-022
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -2 / +2
Query: 754 CXXXADMXXXYXXXXXXYGIQXXXXEXXAHDILRL 650
C ADM Y YG A DIL+L
Sbjct: 2 CEAVADMKFTYVVSCQQYGNDKRAALANAQDILQL 106
>gb|BZ626646.1|BZ626646 ih47e08.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih47e08 5', DNA sequence
Length = 714
Score = 85.4 bits (180), Expect(4) = 5e-022
Identities = 35/39 (89%), Positives = 36/39 (92%)
Frame = -2 / -1
Query: 493 IYKIKLPGNAILGEGKPENQNHAIIFTRGECLQTIDMNQ 377
IY+IKLPG A LGEGKPENQNHAIIFTRGE LQTIDMNQ
Sbjct: 123 IYRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQ 7
Score = 27.6 bits (54), Expect(4) = 5e-022
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2 / -2
Query: 577 KIEKVYYSVLVKA 539
K++KV+YSVLVKA
Sbjct: 272 KVQKVFYSVLVKA 234
Score = 25.8 bits (50), Expect(4) = 5e-022
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 640 YPSXXXAYIDEVXAPXQDRXKKI 572
YP AYIDEV D+ +K+
Sbjct: 326 YPGLRVAYIDEVEEREGDKVQKV 258
Score = 24.4 bits (47), Expect(4) = 5e-022
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -2 / -2
Query: 742 ADMXXXYXXXXXXYGIQXXXXEXXAHDILRL 650
ADM Y YG Q + A DIL L
Sbjct: 623 ADMKFTYVATCQIYGNQKQSGDRRATDILNL 531
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 813,460,600
Number of Sequences: 832831
Number of extensions: 11219059
Number of successful extensions: 52762
Number of sequences better than 1.0e-020: 12
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 23406295354
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)